cod-dicomweb-server 1.2.3 → 1.3.0

package/dist/esm/dataRetrieval/requestManager.js

@@ -0,0 +1,65 @@
+import { CustomError } from '../classes/customClasses';
+class RequestManager {
+    loaderRegistry = {};
+    register(loaderName, loaderObject) {
+        try {
+            if (!loaderObject) {
+                throw new CustomError(`Loader object for ${loaderName} is not provided`);
+            }
+            this.loaderRegistry[loaderName] = {
+                loaderObject,
+                listeners: {}
+            };
+        }
+        catch (error) {
+            console.warn(error);
+            throw new CustomError('throws');
+        }
+    }
+    listenerCallback = (loaderName, taskName, args) => {
+        const listeners = this.loaderRegistry[loaderName]?.listeners[taskName];
+        if (listeners) {
+            listeners.forEach((listener) => listener({ data: args }));
+        }
+    };
+    async executeTask(loaderName, taskName, options) {
+        const loaderObject = this.loaderRegistry[loaderName]?.loaderObject;
+        if (!loaderObject) {
+            throw new CustomError(`Loader ${loaderName} not registered`);
+        }
+        try {
+            // eslint-disable-next-line @typescript-eslint/ban-ts-comment
+            // @ts-ignore
+            return await loaderObject[taskName](options, (args) => this.listenerCallback(loaderName, 'message', args));
+        }
+        catch (error) {
+            console.error(`Error executing task "${taskName}" on "${loaderName}":`, error);
+            throw new CustomError(`Task "${taskName}" failed: ${error.message}`);
+        }
+    }
+    addEventListener(workerName, eventType, listener) {
+        const loaderObject = this.loaderRegistry[workerName];
+        if (!loaderObject) {
+            console.error(`Loader '${workerName}' is not registered.`);
+            return;
+        }
+        if (!loaderObject.listeners[eventType]) {
+            loaderObject.listeners[eventType] = [listener];
+        }
+        else {
+            loaderObject.listeners[eventType].push(listener);
+        }
+    }
+    removeEventListener(workerName, eventType, listener) {
+        const loaderObject = this.loaderRegistry[workerName];
+        if (!loaderObject) {
+            console.error(`Loader '${workerName}' is not registered.`);
+            return;
+        }
+        loaderObject.listeners[eventType] = (loaderObject.listeners[eventType] || []).filter((existingListener) => existingListener !== listener);
+    }
+    reset() {
+        this.loaderRegistry = {};
+    }
+}
+export default RequestManager;

package/dist/esm/dataRetrieval/scripts/filePartial.d.ts

@@ -0,0 +1,18 @@
+declare const filePartial: {
+    partial(args: {
+        url: string;
+        offsets?: {
+            startByte: number;
+            endByte: number;
+        };
+        headers?: Record<string, string>;
+    }, callBack: (data: {
+        url: string;
+        fileArraybuffer: Uint8Array;
+        offsets: {
+            startByte: number;
+            endByte: number;
+        };
+    }) => void): Promise<void | Error>;
+};
+export default filePartial;

package/dist/esm/dataRetrieval/scripts/filePartial.js

@@ -0,0 +1,16 @@
+import { CustomError } from '../../classes/customClasses';
+const filePartial = {
+    async partial(args, callBack) {
+        const { url, offsets, headers } = args;
+        if (offsets?.startByte && offsets?.endByte) {
+            headers['Range'] = `bytes=${offsets.startByte}-${offsets.endByte - 1}`;
+        }
+        await fetch(url, { headers })
+            .then((response) => response.arrayBuffer())
+            .then((data) => callBack({ url, fileArraybuffer: new Uint8Array(data), offsets }))
+            .catch((error) => {
+            throw new CustomError('filePartial.ts: Error when fetching file: ' + error?.message);
+        });
+    }
+};
+export default filePartial;

package/dist/{types/webWorker → esm/dataRetrieval}/scripts/fileStreaming.d.ts

@@ -7,6 +7,12 @@ declare const fileStreaming: {
         url: string;
         headers?: Record<string, string>;
         useSharedArrayBuffer?: boolean;
-    }): Promise<void>;
+    }, callBack: (data: {
+        url: string;
+        position: number;
+        isAppending?: boolean;
+        fileArraybuffer?: Uint8Array;
+        chunk?: Uint8Array;
+    }) => void): Promise<Uint8Array | void>;
 };
 export default fileStreaming;

package/dist/esm/dataRetrieval/scripts/fileStreaming.js

@@ -0,0 +1,93 @@
+import { CustomError } from '../../classes/customClasses';
+const fileStreaming = {
+    maxFetchSize: 4 * 1024 * 1024 * 1024,
+    fetchedSize: 0,
+    setMaxFetchSize(size) {
+        if (size > 0) {
+            this.maxFetchSize = size;
+        }
+    },
+    decreaseFetchedSize(size) {
+        if (size > 0 && size <= this.fetchedSize) {
+            this.fetchedSize -= size;
+        }
+    },
+    async stream(args, callBack) {
+        const { url, headers, useSharedArrayBuffer } = args;
+        const controller = new AbortController();
+        let sharedArraybuffer = null;
+        let fileArraybuffer = null;
+        try {
+            const response = await fetch(url, {
+                headers: { ...headers },
+                signal: controller.signal
+            });
+            if (!response.ok) {
+                throw new CustomError(`HTTP error! status: ${response.status}`);
+            }
+            const reader = response.body?.getReader();
+            if (!reader) {
+                throw new CustomError('Failed to get reader from response body');
+            }
+            let result;
+            let completed = false;
+            const totalLength = parseInt(response.headers.get('Content-Length') || '0', 10);
+            const firstChunk = await reader.read();
+            completed = firstChunk.done;
+            if (!firstChunk.value) {
+                throw new CustomError('The fetched chunks does not have value');
+            }
+            if (!completed) {
+                let position = firstChunk.value.length;
+                if (this.fetchedSize + position > this.maxFetchSize) {
+                    controller.abort();
+                    throw new CustomError(`Maximum size(${this.maxFetchSize}) for fetching files reached`);
+                }
+                this.fetchedSize += position;
+                if (useSharedArrayBuffer) {
+                    sharedArraybuffer = new SharedArrayBuffer(totalLength);
+                    fileArraybuffer = new Uint8Array(sharedArraybuffer);
+                }
+                else {
+                    fileArraybuffer = new Uint8Array(totalLength);
+                }
+                fileArraybuffer.set(firstChunk.value);
+                callBack({ url, position, fileArraybuffer });
+                while (!completed) {
+                    result = await reader.read();
+                    if (result.done) {
+                        completed = true;
+                        continue;
+                    }
+                    const chunk = result.value;
+                    if (this.fetchedSize + chunk.length > this.maxFetchSize) {
+                        sharedArraybuffer = null;
+                        fileArraybuffer = null;
+                        controller.abort();
+                        throw new CustomError(`Maximum size(${this.maxFetchSize}) for fetching files reached`);
+                    }
+                    this.fetchedSize += chunk.length;
+                    fileArraybuffer.set(chunk, position);
+                    position += chunk.length;
+                    callBack({
+                        isAppending: true,
+                        url,
+                        position: position,
+                        chunk: !useSharedArrayBuffer ? chunk : undefined
+                    });
+                }
+            }
+        }
+        catch (error) {
+            const streamingError = new CustomError('fileStreaming.ts: ' + error.message || 'An error occured when streaming');
+            console.error(streamingError.message, error);
+            throw streamingError;
+        }
+        finally {
+            sharedArraybuffer = null;
+            fileArraybuffer = null;
+            controller.abort();
+        }
+    }
+};
+export default fileStreaming;

package/dist/esm/dataRetrieval/utils/environment.d.ts

@@ -0,0 +1 @@
+export declare function isNodeEnvironment(): boolean;

package/dist/esm/dataRetrieval/utils/environment.js

@@ -0,0 +1,3 @@
+export function isNodeEnvironment() {
+    return typeof process !== 'undefined' && process.versions != null && process.versions.node != null;
+}

package/dist/esm/dataRetrieval/workerManager.d.ts

@@ -0,0 +1,10 @@
+import { CustomErrorEvent, CustomMessageEvent } from '../classes/customClasses';
+declare class WebWorkerManager {
+    private workerRegistry;
+    register(name: string, workerFn: () => Worker): void;
+    executeTask(workerName: string, taskName: string, options: Record<string, unknown> | unknown): Promise<void>;
+    addEventListener(workerName: string, eventType: keyof WorkerEventMap, listener: (evt: CustomMessageEvent | CustomErrorEvent) => unknown): void;
+    removeEventListener(workerName: string, eventType: keyof WorkerEventMap, listener: (evt: CustomMessageEvent | CustomErrorEvent) => unknown): void;
+    reset(): void;
+}
+export default WebWorkerManager;

package/dist/esm/dataRetrieval/workerManager.js

@@ -0,0 +1,55 @@
+import { wrap } from 'comlink';
+import { CustomError } from '../classes/customClasses';
+class WebWorkerManager {
+    workerRegistry = {};
+    register(name, workerFn) {
+        try {
+            const worker = workerFn();
+            if (!worker) {
+                throw new CustomError(`WorkerFn of worker ${name} is not creating a worker`);
+            }
+            this.workerRegistry[name] = {
+                instance: wrap(worker),
+                nativeWorker: worker
+            };
+        }
+        catch (error) {
+            console.warn(error);
+        }
+    }
+    async executeTask(workerName, taskName, options) {
+        const worker = this.workerRegistry[workerName]?.instance;
+        if (!worker) {
+            throw new CustomError(`Worker ${workerName} not registered`);
+        }
+        try {
+            // eslint-disable-next-line @typescript-eslint/ban-ts-comment
+            // @ts-ignore
+            return await worker[taskName](options);
+        }
+        catch (error) {
+            console.error(`Error executing task "${taskName}" on worker "${workerName}":`, error);
+            throw new CustomError(`Task "${taskName}" failed: ${error.message}`);
+        }
+    }
+    addEventListener(workerName, eventType, listener) {
+        const worker = this.workerRegistry[workerName];
+        if (!worker) {
+            console.error(`Worker type '${workerName}' is not registered.`);
+            return;
+        }
+        worker.nativeWorker.addEventListener(eventType, listener);
+    }
+    removeEventListener(workerName, eventType, listener) {
+        const worker = this.workerRegistry[workerName];
+        if (!worker) {
+            console.error(`Worker type '${workerName}' is not registered.`);
+            return;
+        }
+        worker.nativeWorker.removeEventListener(eventType, listener);
+    }
+    reset() {
+        this.workerRegistry = {};
+    }
+}
+export default WebWorkerManager;

package/dist/esm/dataRetrieval/workers/filePartialWorker.js

@@ -0,0 +1,7 @@
+import { expose } from 'comlink';
+import filePartial from '../scripts/filePartial';
+const filePartialWorker = {
+    ...filePartial,
+    partial: (args) => filePartial.partial(args, postMessage)
+};
+expose(filePartialWorker);

package/dist/esm/dataRetrieval/workers/fileStreamingWorker.js

@@ -0,0 +1,7 @@
+import { expose } from 'comlink';
+import fileStreaming from '../scripts/fileStreaming';
+const fileStreamingWorker = {
+    ...fileStreaming,
+    stream: (args) => fileStreaming.stream(args, postMessage)
+};
+expose(fileStreamingWorker);

package/dist/{types → esm}/fileManager.d.ts

@@ -1,8 +1,8 @@
 import type { FileManagerOptions } from './types';
 declare class FileManager {
     private files;
-    private fileStreamingWorkerName;
-    constructor({ fileStreamingWorkerName }: FileManagerOptions);
+    private fileStreamingScriptName;
+    constructor({ fileStreamingScriptName }: FileManagerOptions);
     set(url: string, file: {
         data: Uint8Array;
         position: number;

package/dist/esm/fileManager.js

@@ -0,0 +1,52 @@
+import { getDataRetrievalManager } from './dataRetrieval/dataRetrievalManager';
+class FileManager {
+    files = {};
+    fileStreamingScriptName;
+    constructor({ fileStreamingScriptName }) {
+        this.fileStreamingScriptName = fileStreamingScriptName;
+    }
+    set(url, file) {
+        this.files[url] = file;
+    }
+    get(url, offsets) {
+        if (!this.files[url] || (offsets && this.files[url].position <= offsets.endByte)) {
+            return null;
+        }
+        return offsets ? this.files[url].data.slice(offsets.startByte, offsets.endByte) : this.files[url].data;
+    }
+    setPosition(url, position) {
+        if (this.files[url]) {
+            this.files[url].position = position;
+        }
+    }
+    getPosition(url) {
+        return this.files[url]?.position;
+    }
+    append(url, chunk, position) {
+        if (this.files[url] && position) {
+            this.files[url].data.set(chunk, position - chunk.length);
+            this.setPosition(url, position);
+        }
+    }
+    getTotalSize() {
+        return Object.entries(this.files).reduce((total, [url, { position }]) => {
+            return url.includes('?bytes=') ? total : total + position;
+        }, 0);
+    }
+    remove(url) {
+        const removedSize = this.getPosition(url);
+        delete this.files[url];
+        if (url.includes('?bytes=')) {
+            return;
+        }
+        const retrievalManager = getDataRetrievalManager();
+        retrievalManager.executeTask(this.fileStreamingScriptName, 'decreaseFetchedSize', removedSize);
+    }
+    purge() {
+        const totalSize = this.getTotalSize();
+        this.files = {};
+        const retrievalManager = getDataRetrievalManager();
+        retrievalManager.executeTask(this.fileStreamingScriptName, 'decreaseFetchedSize', totalSize);
+    }
+}
+export default FileManager;

package/dist/{types → esm}/index.d.ts

@@ -1,5 +1,5 @@
 import { FetchType } from './constants/enums';
-import CodDicomWebServer from './classes/CodDicomWebServer';
+import { CodDicomWebServer } from './classes';
 export { FetchType, CodDicomWebServer };
 declare const _default: {
     FetchType: typeof FetchType;

package/dist/esm/index.js

@@ -0,0 +1,4 @@
+import { FetchType } from './constants/enums';
+import { CodDicomWebServer } from './classes';
+export { FetchType, CodDicomWebServer };
+export default { FetchType, CodDicomWebServer };

package/dist/{types → esm}/metadataManager.d.ts

@@ -2,6 +2,7 @@ import type { JsonMetadata, MetadataUrlCreationParams } from './types';
 declare class MetadataManager {
     private metadata;
     constructor();
+    addDeidMetadata(jsonMetadata: JsonMetadata): void;
     getMetadataFromCache(url: string): JsonMetadata;
     getMetadata(params: MetadataUrlCreationParams, headers: Record<string, string>): Promise<JsonMetadata | null>;
 }

package/dist/esm/metadataManager.js

@@ -0,0 +1,47 @@
+import { CustomError } from './classes/customClasses';
+import { createMetadataJsonUrl } from './classes/utils';
+class MetadataManager {
+    metadata = {};
+    constructor() { }
+    addDeidMetadata(jsonMetadata) {
+        const { deid_study_uid, deid_series_uid, cod } = jsonMetadata;
+        if (!cod || !deid_study_uid || !deid_series_uid) {
+            console.warn('Missing required metadata properties: cod, deid_study_uid, or deid_series_uid');
+            return;
+        }
+        for (const deid_sop_uid in cod.instances) {
+            const instance = cod.instances[deid_sop_uid];
+            instance.metadata.DeidStudyInstanceUID = { Value: [deid_study_uid] };
+            instance.metadata.DeidSeriesInstanceUID = { Value: [deid_series_uid] };
+            instance.metadata.DeidSopInstanceUID = { Value: [deid_sop_uid] };
+        }
+    }
+    getMetadataFromCache(url) {
+        return this.metadata[url];
+    }
+    async getMetadata(params, headers) {
+        const url = createMetadataJsonUrl(params);
+        if (!url) {
+            throw new CustomError('Error creating metadata json url');
+        }
+        const cachedMetadata = this.getMetadataFromCache(url);
+        if (cachedMetadata) {
+            return cachedMetadata;
+        }
+        try {
+            const response = await fetch(url, { headers });
+            if (!response.ok) {
+                throw new CustomError(`Failed to fetch metadata: ${response.statusText}`);
+            }
+            const data = await response.json();
+            this.addDeidMetadata(data);
+            this.metadata[url] = data;
+            return data;
+        }
+        catch (error) {
+            console.error(error);
+            throw error;
+        }
+    }
+}
+export default MetadataManager;

package/dist/esm/types/codDicomWebServerOptions.js

@@ -0,0 +1 @@
+export {};

package/dist/{types → esm}/types/fileManagerOptions.d.ts

@@ -1,4 +1,4 @@
 type FileManagerOptions = {
-    fileStreamingWorkerName: string;
+    fileStreamingScriptName: string;
 };
 export type { FileManagerOptions };

package/dist/esm/types/fileManagerOptions.js

@@ -0,0 +1 @@
+export {};

package/dist/{types → esm}/types/index.d.ts

@@ -4,4 +4,4 @@ export * from './metadata';
 export * from './metadataUrlCreationParams';
 export * from './parsedWadoRsUrlDetails';
 export * from './requestOptions';
-export * from './workerCustomMessageEvents';
+export * from './scriptObject';

package/dist/esm/types/index.js

@@ -0,0 +1,7 @@
+export * from './codDicomWebServerOptions';
+export * from './fileManagerOptions';
+export * from './metadata';
+export * from './metadataUrlCreationParams';
+export * from './parsedWadoRsUrlDetails';
+export * from './requestOptions';
+export * from './scriptObject';

package/dist/{types → esm}/types/metadata.d.ts

@@ -52,7 +52,7 @@ type JsonMetadata = {
     };
 };
 type InstanceMetadata = Record<string, {
-    vr: string;
+    vr?: string;
     Value?: unknown[];
     BulkDataURI?: string;
     InlineBinary?: string;

package/dist/esm/types/metadata.js

@@ -0,0 +1 @@
+export {};

package/dist/esm/types/metadataUrlCreationParams.js

@@ -0,0 +1 @@
+export {};

package/dist/esm/types/parsedWadoRsUrlDetails.js

@@ -0,0 +1 @@
+export {};

package/dist/esm/types/requestOptions.js

@@ -0,0 +1 @@
+export {};

package/dist/esm/types/scriptObject.d.ts

@@ -0,0 +1,4 @@
+type ScriptObject = {
+    [variable: string]: unknown | ((...args: unknown[]) => unknown);
+};
+export type { ScriptObject };

package/dist/esm/types/scriptObject.js

@@ -0,0 +1 @@
+export {};

package/dist/umd/614.js

@@ -0,0 +1,19 @@
+/*!
+ * 
+ * cod-dicomweb-server v1.2.4
+ * git+https://github.com/gradienthealth/cod-dicomweb-server.git
+ *
+ *   Copyright (c) Adithyan Dinesh and project contributors.
+ *
+ *   This source code is licensed under the MIT license found in the
+ *   LICENSE file in the root directory of this source tree.
+ *
+ */
+!function(t,e){if("object"==typeof exports&&"object"==typeof module)module.exports=e();else if("function"==typeof define&&define.amd)define([],e);else{var r=e();for(var n in r)("object"==typeof exports?exports:t)[n]=r[n]}}(self,(()=>(()=>{"use strict";
+/**
+ * @license
+ * Copyright 2019 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+const t=Symbol("Comlink.proxy"),e=Symbol("Comlink.endpoint"),r=Symbol("Comlink.releaseProxy"),n=Symbol("Comlink.finalizer"),o=Symbol("Comlink.thrown"),i=t=>"object"==typeof t&&null!==t||"function"==typeof t,a={canHandle:e=>i(e)&&e[t],serialize(t){const{port1:e,port2:r}=new MessageChannel;return u(t,e),[r,[r]]},deserialize:t=>(t.start(),function(t,e){const r=new Map;return t.addEventListener("message",(function(t){const{data:e}=t;if(!e||!e.id)return;const n=r.get(e.id);if(n)try{n(e)}finally{r.delete(e.id)}})),h(t,r,[],e)}(t))},c=new Map([["proxy",a],["throw",{canHandle:t=>i(t)&&o in t,serialize({value:t}){let e;return e=t instanceof Error?{isError:!0,value:{message:t.message,name:t.name,stack:t.stack}}:{isError:!1,value:t},[e,[]]},deserialize(t){if(t.isError)throw Object.assign(new Error(t.value.message),t.value);throw t.value}}]]);function u(e,r=globalThis,i=["*"]){r.addEventListener("message",(function a(c){if(!c||!c.data)return;if(!function(t,e){for(const r of 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