clustal-js 2.0.12 → 2.0.13
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +2 -2
- package/dist/index.js.map +1 -1
- package/esm/index.d.ts +2 -2
- package/esm/index.js.map +1 -1
- package/package.json +1 -1
- package/src/index.ts +2 -2
package/dist/index.d.ts
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
export declare function parseClustalIter(arr: Iterator<string>): {
|
|
2
2
|
consensus: string;
|
|
3
3
|
alns: {
|
|
4
|
-
id: string
|
|
4
|
+
id: string;
|
|
5
5
|
seq: string;
|
|
6
6
|
}[];
|
|
7
7
|
header: {
|
|
@@ -16,7 +16,7 @@ export interface Row {
|
|
|
16
16
|
export declare function parse(contents: string): {
|
|
17
17
|
consensus: string;
|
|
18
18
|
alns: {
|
|
19
|
-
id: string
|
|
19
|
+
id: string;
|
|
20
20
|
seq: string;
|
|
21
21
|
}[];
|
|
22
22
|
header: {
|
package/dist/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;AAGA,4CAqBC;AAOD,sBAGC;AAED,sCA+BC;AAnED,+CAAmD;AACnD,uCAA0E;AAE1E,SAAgB,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,IAAA,8BAAoB,EAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,IAAA,qBAAW,EAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,IAAA,qBAAW,EAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;AAGA,4CAqBC;AAOD,sBAGC;AAED,sCA+BC;AAnED,+CAAmD;AACnD,uCAA0E;AAE1E,SAAgB,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,IAAA,8BAAoB,EAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,IAAA,qBAAW,EAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,IAAA,qBAAW,EAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,IAAI,SAAS,CAAC,MAAM,IAAI,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC5C,MAAM,IAAI,KAAK,CACb,4CAA4C,SAAS,CAAC,MAAM,QAAQ,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAC1F,CAAA;IACH,CAAC;IAED,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,CAAA;AACpC,CAAC;AAOD,SAAgB,KAAK,CAAC,QAAgB;IACpC,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAA;IACpD,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAA;AAC/B,CAAC;AAED,SAAgB,aAAa,CAAC,QAAgB;IAC5C,MAAM,QAAQ,GAAG,QAAQ;SACtB,KAAK,CAAC,IAAI,CAAC;SACX,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;SAC/B,IAAI,CAAC,IAAI,CAAC,CAAA;IAEb,MAAM,GAAG,GAAG,IAAA,iCAAmB,EAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxE,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;IACxB,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,IAAI,SAAS,CAAC,MAAM,KAAK,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7C,MAAM,IAAI,KAAK,CACb,6CAA6C,SAAS,CAAC,MAAM,QAAQ,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAC3F,CAAA;IACH,CAAC;IACD,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CACb,2DAA2D,IAAI,CAAC,MAAM,EAAE,CACzE,CAAA;IACH,CAAC;IACD,OAAO;QACL,SAAS;QACT,IAAI,EAAE,IAAkB;KACzB,CAAA;AACH,CAAC"}
|
package/esm/index.d.ts
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
export declare function parseClustalIter(arr: Iterator<string>): {
|
|
2
2
|
consensus: string;
|
|
3
3
|
alns: {
|
|
4
|
-
id: string
|
|
4
|
+
id: string;
|
|
5
5
|
seq: string;
|
|
6
6
|
}[];
|
|
7
7
|
header: {
|
|
@@ -16,7 +16,7 @@ export interface Row {
|
|
|
16
16
|
export declare function parse(contents: string): {
|
|
17
17
|
consensus: string;
|
|
18
18
|
alns: {
|
|
19
|
-
id: string
|
|
19
|
+
id: string;
|
|
20
20
|
seq: string;
|
|
21
21
|
}[];
|
|
22
22
|
header: {
|
package/esm/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,oBAAoB,EAAE,MAAM,WAAW,CAAA;AAE1E,MAAM,UAAU,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,WAAW,CAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,oBAAoB,EAAE,MAAM,WAAW,CAAA;AAE1E,MAAM,UAAU,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,WAAW,CAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,IAAI,SAAS,CAAC,MAAM,IAAI,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC5C,MAAM,IAAI,KAAK,CACb,4CAA4C,SAAS,CAAC,MAAM,QAAQ,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAC1F,CAAA;IACH,CAAC;IAED,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,CAAA;AACpC,CAAC;AAOD,MAAM,UAAU,KAAK,CAAC,QAAgB;IACpC,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAA;IACpD,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAA;AAC/B,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,QAAgB;IAC5C,MAAM,QAAQ,GAAG,QAAQ;SACtB,KAAK,CAAC,IAAI,CAAC;SACX,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;SAC/B,IAAI,CAAC,IAAI,CAAC,CAAA;IAEb,MAAM,GAAG,GAAG,mBAAmB,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxE,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;IACxB,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,IAAI,SAAS,CAAC,MAAM,KAAK,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7C,MAAM,IAAI,KAAK,CACb,6CAA6C,SAAS,CAAC,MAAM,QAAQ,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAC3F,CAAA;IACH,CAAC;IACD,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CACb,2DAA2D,IAAI,CAAC,MAAM,EAAE,CACzE,CAAA;IACH,CAAC;IACD,OAAO;QACL,SAAS;QACT,IAAI,EAAE,IAAkB;KACzB,CAAA;AACH,CAAC"}
|
package/package.json
CHANGED
package/src/index.ts
CHANGED
|
@@ -13,7 +13,7 @@ export function parseClustalIter(arr: Iterator<string>) {
|
|
|
13
13
|
throw new Error('No blocks parsed')
|
|
14
14
|
}
|
|
15
15
|
|
|
16
|
-
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]
|
|
16
|
+
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]!, seq: n }))
|
|
17
17
|
const { consensus } = res
|
|
18
18
|
if (consensus.length != alns[0]!.seq.length) {
|
|
19
19
|
throw new Error(
|
|
@@ -45,7 +45,7 @@ export function parsePairwise(contents: string) {
|
|
|
45
45
|
throw new Error('No blocks parsed')
|
|
46
46
|
}
|
|
47
47
|
|
|
48
|
-
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]
|
|
48
|
+
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]!, seq: n }))
|
|
49
49
|
const { consensus } = res
|
|
50
50
|
const firstAln = alns[0]
|
|
51
51
|
if (!firstAln) {
|