clustal-js 2.0.11 → 2.0.13
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +2 -2
- package/dist/index.js.map +1 -1
- package/dist/util.d.ts +2 -2
- package/dist/util.js.map +1 -1
- package/esm/index.d.ts +2 -2
- package/esm/index.js.map +1 -1
- package/esm/util.d.ts +2 -2
- package/esm/util.js.map +1 -1
- package/package.json +1 -1
- package/src/index.ts +2 -2
- package/src/util.ts +1 -1
package/dist/index.d.ts
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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export declare function parseClustalIter(arr: Iterator<string>): {
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2
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consensus: string;
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3
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alns: {
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-
id: string
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+
id: string;
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seq: string;
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}[];
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header: {
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@@ -16,7 +16,7 @@ export interface Row {
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export declare function parse(contents: string): {
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consensus: string;
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alns: {
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-
id: string
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+
id: string;
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seq: string;
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}[];
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header: {
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package/dist/index.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;AAGA,4CAqBC;AAOD,sBAGC;AAED,sCA+BC;AAnED,+CAAmD;AACnD,uCAA0E;AAE1E,SAAgB,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,IAAA,8BAAoB,EAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,IAAA,qBAAW,EAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,IAAA,qBAAW,EAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,
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1
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+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;AAGA,4CAqBC;AAOD,sBAGC;AAED,sCA+BC;AAnED,+CAAmD;AACnD,uCAA0E;AAE1E,SAAgB,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,IAAA,8BAAoB,EAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,IAAA,qBAAW,EAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,IAAA,qBAAW,EAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,IAAI,SAAS,CAAC,MAAM,IAAI,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC5C,MAAM,IAAI,KAAK,CACb,4CAA4C,SAAS,CAAC,MAAM,QAAQ,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAC1F,CAAA;IACH,CAAC;IAED,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,CAAA;AACpC,CAAC;AAOD,SAAgB,KAAK,CAAC,QAAgB;IACpC,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAA;IACpD,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAA;AAC/B,CAAC;AAED,SAAgB,aAAa,CAAC,QAAgB;IAC5C,MAAM,QAAQ,GAAG,QAAQ;SACtB,KAAK,CAAC,IAAI,CAAC;SACX,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;SAC/B,IAAI,CAAC,IAAI,CAAC,CAAA;IAEb,MAAM,GAAG,GAAG,IAAA,iCAAmB,EAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxE,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;IACxB,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,IAAI,SAAS,CAAC,MAAM,KAAK,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7C,MAAM,IAAI,KAAK,CACb,6CAA6C,SAAS,CAAC,MAAM,QAAQ,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAC3F,CAAA;IACH,CAAC;IACD,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CACb,2DAA2D,IAAI,CAAC,MAAM,EAAE,CACzE,CAAA;IACH,CAAC;IACD,OAAO;QACL,SAAS;QACT,IAAI,EAAE,IAAkB;KACzB,CAAA;AACH,CAAC"}
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package/dist/util.d.ts
CHANGED
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@@ -6,12 +6,12 @@ export declare function parseHeader(info: string): {
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export declare function getFirstNonEmptyLine(arr: Iterator<string>): string;
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export declare function getSeqBounds(line: string): readonly [number, number];
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export declare function parseBlock(arr: Iterator<string>): {
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-
ids:
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+
ids: string[];
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seqs: string[];
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consensus: string;
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} | undefined;
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export declare function parseBlocks(arr: Iterator<string>): {
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-
ids:
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+
ids: string[];
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seqs: string[];
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consensus: string;
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} | undefined;
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package/dist/util.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;AAAA,oCAGC;AACD,kCAYC;AAED,oDAOC;AAED,oCAMC;AAGD,gCAgCC;AAED,kCAYC;AAlFD,SAAgB,YAAY,CAAC,IAAY;IACvC,MAAM,GAAG,GAAG,qBAAqB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAC5C,OAAO,GAAG,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;AAC5C,CAAC;AACD,SAAgB,WAAW,CAAC,IAAY;IACtC,MAAM,YAAY,GAAG,CAAC,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAA;IAE5E,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAChD,OAAO,CAAC,IAAI,CACV,GAAG,IAAI,mCAAmC,YAAY,CAAC,IAAI,CACzD,GAAG,CACJ,0CAA0C,CAC5C,CAAA;IACH,CAAC;IACD,MAAM,OAAO,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IAClC,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,CAAA;AAC1B,CAAC;AAED,SAAgB,oBAAoB,CAAC,GAAqB;IACxD,wDAAwD;IACxD,IAAI,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACrB,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;QAC9C,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACnB,CAAC;IACD,OAAO,IAAI,CAAC,KAAK,CAAA;AACnB,CAAC;AAED,SAAgB,YAAY,CAAC,IAAY;IACvC,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;IAChC,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAC,CAAA;IAC1C,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,CAAA;IACtD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;IAC/B,OAAO,CAAC,CAAC,EAAE,CAAC,CAAU,CAAA;AACxB,CAAC;AAED,sDAAsD;AACtD,SAAgB,UAAU,CAAC,GAAqB;IAC9C,IAAI,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,IAAI,aAAa,GAAG,EAAE,CAAA;IACtB,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,OAAO,IAAI,EAAE,CAAC;QACZ,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;YACzB,aAAa,GAAG,IAAI,CAAA;QACtB,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClB,CAAC;QACD,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAC,KAAK,CAAA;IACzB,CAAC;IACD,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,CAAE,CAAC,CAAA;IAC5C,MAAM,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAA;IAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,
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{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;AAAA,oCAGC;AACD,kCAYC;AAED,oDAOC;AAED,oCAMC;AAGD,gCAgCC;AAED,kCAYC;AAlFD,SAAgB,YAAY,CAAC,IAAY;IACvC,MAAM,GAAG,GAAG,qBAAqB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAC5C,OAAO,GAAG,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;AAC5C,CAAC;AACD,SAAgB,WAAW,CAAC,IAAY;IACtC,MAAM,YAAY,GAAG,CAAC,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAA;IAE5E,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAChD,OAAO,CAAC,IAAI,CACV,GAAG,IAAI,mCAAmC,YAAY,CAAC,IAAI,CACzD,GAAG,CACJ,0CAA0C,CAC5C,CAAA;IACH,CAAC;IACD,MAAM,OAAO,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IAClC,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,CAAA;AAC1B,CAAC;AAED,SAAgB,oBAAoB,CAAC,GAAqB;IACxD,wDAAwD;IACxD,IAAI,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACrB,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;QAC9C,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACnB,CAAC;IACD,OAAO,IAAI,CAAC,KAAK,CAAA;AACnB,CAAC;AAED,SAAgB,YAAY,CAAC,IAAY;IACvC,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;IAChC,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAC,CAAA;IAC1C,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,CAAA;IACtD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;IAC/B,OAAO,CAAC,CAAC,EAAE,CAAC,CAAU,CAAA;AACxB,CAAC;AAED,sDAAsD;AACtD,SAAgB,UAAU,CAAC,GAAqB;IAC9C,IAAI,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,IAAI,aAAa,GAAG,EAAE,CAAA;IACtB,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,OAAO,IAAI,EAAE,CAAC;QACZ,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;YACzB,aAAa,GAAG,IAAI,CAAA;QACtB,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClB,CAAC;QACD,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAC,KAAK,CAAA;IACzB,CAAC;IACD,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,CAAE,CAAC,CAAA;IAC5C,MAAM,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAA;IAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAE,CAAC,CAAA;IAClC,MAAM,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC,CAAA;IAChD,IAAI,SAAS,GAAG,aAAa,CAAC,KAAK,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;IAE/C,0DAA0D;IAC1D,MAAM,SAAS,GAAG,IAAI,CAAC,CAAC,CAAE,CAAC,MAAM,GAAG,SAAS,CAAC,MAAM,CAAA;IACpD,IAAI,SAAS,EAAE,CAAC;QACd,SAAS,IAAI,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC,CAAA;IACpC,CAAC;IACD,OAAO;QACL,GAAG;QACH,IAAI;QACJ,SAAS;KACV,CAAA;AACH,CAAC;AAED,SAAgB,WAAW,CAAC,GAAqB;IAC/C,IAAI,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,UAAU,CAAC,GAAG,CAAC,CAAA;IAC3B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,OAAO,CAAC,KAAK,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC;YACjC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC3C,GAAG,CAAC,IAAI,CAAC,CAAC,CAAE,IAAI,KAAK,CAAC,IAAI,CAAC,CAAC,CAAE,CAAA;YAChC,CAAC;YACD,GAAG,CAAC,SAAS,IAAI,KAAK,CAAC,SAAS,CAAA;QAClC,CAAC;IACH,CAAC;IACD,OAAO,GAAG,CAAA;AACZ,CAAC"}
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package/esm/index.d.ts
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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export declare function parseClustalIter(arr: Iterator<string>): {
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2
2
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consensus: string;
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3
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alns: {
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id: string
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+
id: string;
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seq: string;
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}[];
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header: {
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@@ -16,7 +16,7 @@ export interface Row {
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export declare function parse(contents: string): {
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consensus: string;
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alns: {
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id: string
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+
id: string;
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seq: string;
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}[];
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header: {
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package/esm/index.js.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,oBAAoB,EAAE,MAAM,WAAW,CAAA;AAE1E,MAAM,UAAU,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,WAAW,CAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,
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1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,oBAAoB,EAAE,MAAM,WAAW,CAAA;AAE1E,MAAM,UAAU,gBAAgB,CAAC,GAAqB;IACpD,MAAM,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,MAAM,MAAM,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;IAEhC,MAAM,GAAG,GAAG,WAAW,CAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,IAAI,SAAS,CAAC,MAAM,IAAI,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC5C,MAAM,IAAI,KAAK,CACb,4CAA4C,SAAS,CAAC,MAAM,QAAQ,IAAI,CAAC,CAAC,CAAE,CAAC,GAAG,CAAC,MAAM,EAAE,CAC1F,CAAA;IACH,CAAC;IAED,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,CAAA;AACpC,CAAC;AAOD,MAAM,UAAU,KAAK,CAAC,QAAgB;IACpC,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAA;IACpD,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAA;AAC/B,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,QAAgB;IAC5C,MAAM,QAAQ,GAAG,QAAQ;SACtB,KAAK,CAAC,IAAI,CAAC;SACX,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;SAC/B,IAAI,CAAC,IAAI,CAAC,CAAA;IAEb,MAAM,GAAG,GAAG,mBAAmB,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxE,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;IACrC,CAAC;IAED,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,CAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1E,MAAM,EAAE,SAAS,EAAE,GAAG,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;IACxB,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;IACxC,CAAC;IACD,IAAI,SAAS,CAAC,MAAM,KAAK,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7C,MAAM,IAAI,KAAK,CACb,6CAA6C,SAAS,CAAC,MAAM,QAAQ,QAAQ,CAAC,GAAG,CAAC,MAAM,EAAE,CAC3F,CAAA;IACH,CAAC;IACD,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACtB,MAAM,IAAI,KAAK,CACb,2DAA2D,IAAI,CAAC,MAAM,EAAE,CACzE,CAAA;IACH,CAAC;IACD,OAAO;QACL,SAAS;QACT,IAAI,EAAE,IAAkB;KACzB,CAAA;AACH,CAAC"}
|
package/esm/util.d.ts
CHANGED
|
@@ -6,12 +6,12 @@ export declare function parseHeader(info: string): {
|
|
|
6
6
|
export declare function getFirstNonEmptyLine(arr: Iterator<string>): string;
|
|
7
7
|
export declare function getSeqBounds(line: string): readonly [number, number];
|
|
8
8
|
export declare function parseBlock(arr: Iterator<string>): {
|
|
9
|
-
ids:
|
|
9
|
+
ids: string[];
|
|
10
10
|
seqs: string[];
|
|
11
11
|
consensus: string;
|
|
12
12
|
} | undefined;
|
|
13
13
|
export declare function parseBlocks(arr: Iterator<string>): {
|
|
14
|
-
ids:
|
|
14
|
+
ids: string[];
|
|
15
15
|
seqs: string[];
|
|
16
16
|
consensus: string;
|
|
17
17
|
} | undefined;
|
package/esm/util.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,YAAY,CAAC,IAAY;IACvC,MAAM,GAAG,GAAG,qBAAqB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAC5C,OAAO,GAAG,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;AAC5C,CAAC;AACD,MAAM,UAAU,WAAW,CAAC,IAAY;IACtC,MAAM,YAAY,GAAG,CAAC,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAA;IAE5E,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAChD,OAAO,CAAC,IAAI,CACV,GAAG,IAAI,mCAAmC,YAAY,CAAC,IAAI,CACzD,GAAG,CACJ,0CAA0C,CAC5C,CAAA;IACH,CAAC;IACD,MAAM,OAAO,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IAClC,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,CAAA;AAC1B,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,GAAqB;IACxD,wDAAwD;IACxD,IAAI,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACrB,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;QAC9C,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACnB,CAAC;IACD,OAAO,IAAI,CAAC,KAAK,CAAA;AACnB,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,IAAY;IACvC,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;IAChC,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAC,CAAA;IAC1C,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,CAAA;IACtD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;IAC/B,OAAO,CAAC,CAAC,EAAE,CAAC,CAAU,CAAA;AACxB,CAAC;AAED,sDAAsD;AACtD,MAAM,UAAU,UAAU,CAAC,GAAqB;IAC9C,IAAI,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,IAAI,aAAa,GAAG,EAAE,CAAA;IACtB,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,OAAO,IAAI,EAAE,CAAC;QACZ,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;YACzB,aAAa,GAAG,IAAI,CAAA;QACtB,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClB,CAAC;QACD,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAC,KAAK,CAAA;IACzB,CAAC;IACD,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,CAAE,CAAC,CAAA;IAC5C,MAAM,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAA;IAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,
|
|
1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,YAAY,CAAC,IAAY;IACvC,MAAM,GAAG,GAAG,qBAAqB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAC5C,OAAO,GAAG,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;AAC5C,CAAC;AACD,MAAM,UAAU,WAAW,CAAC,IAAY;IACtC,MAAM,YAAY,GAAG,CAAC,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAA;IAE5E,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAChD,OAAO,CAAC,IAAI,CACV,GAAG,IAAI,mCAAmC,YAAY,CAAC,IAAI,CACzD,GAAG,CACJ,0CAA0C,CAC5C,CAAA;IACH,CAAC;IACD,MAAM,OAAO,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IAClC,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,CAAA;AAC1B,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,GAAqB;IACxD,wDAAwD;IACxD,IAAI,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACrB,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;QAC9C,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IACnB,CAAC;IACD,OAAO,IAAI,CAAC,KAAK,CAAA;AACnB,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,IAAY;IACvC,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;IAChC,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAC,CAAA;IAC1C,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAE,CAAC,CAAA;IACtD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;IAC/B,OAAO,CAAC,CAAC,EAAE,CAAC,CAAU,CAAA;AACxB,CAAC;AAED,sDAAsD;AACtD,MAAM,UAAU,UAAU,CAAC,GAAqB;IAC9C,IAAI,IAAI,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,IAAI,aAAa,GAAG,EAAE,CAAA;IACtB,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,OAAO,IAAI,EAAE,CAAC;QACZ,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;YACzB,aAAa,GAAG,IAAI,CAAA;QACtB,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClB,CAAC;QACD,IAAI,GAAG,GAAG,CAAC,IAAI,EAAE,CAAC,KAAK,CAAA;IACzB,CAAC;IACD,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,CAAE,CAAC,CAAA;IAC5C,MAAM,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAA;IAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAE,CAAC,CAAA;IAClC,MAAM,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC,CAAA;IAChD,IAAI,SAAS,GAAG,aAAa,CAAC,KAAK,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;IAE/C,0DAA0D;IAC1D,MAAM,SAAS,GAAG,IAAI,CAAC,CAAC,CAAE,CAAC,MAAM,GAAG,SAAS,CAAC,MAAM,CAAA;IACpD,IAAI,SAAS,EAAE,CAAC;QACd,SAAS,IAAI,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC,CAAA;IACpC,CAAC;IACD,OAAO;QACL,GAAG;QACH,IAAI;QACJ,SAAS;KACV,CAAA;AACH,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,GAAqB;IAC/C,IAAI,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,UAAU,CAAC,GAAG,CAAC,CAAA;IAC3B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,OAAO,CAAC,KAAK,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC;YACjC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC3C,GAAG,CAAC,IAAI,CAAC,CAAC,CAAE,IAAI,KAAK,CAAC,IAAI,CAAC,CAAC,CAAE,CAAA;YAChC,CAAC;YACD,GAAG,CAAC,SAAS,IAAI,KAAK,CAAC,SAAS,CAAA;QAClC,CAAC;IACH,CAAC;IACD,OAAO,GAAG,CAAA;AACZ,CAAC"}
|
package/package.json
CHANGED
package/src/index.ts
CHANGED
|
@@ -13,7 +13,7 @@ export function parseClustalIter(arr: Iterator<string>) {
|
|
|
13
13
|
throw new Error('No blocks parsed')
|
|
14
14
|
}
|
|
15
15
|
|
|
16
|
-
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]
|
|
16
|
+
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]!, seq: n }))
|
|
17
17
|
const { consensus } = res
|
|
18
18
|
if (consensus.length != alns[0]!.seq.length) {
|
|
19
19
|
throw new Error(
|
|
@@ -45,7 +45,7 @@ export function parsePairwise(contents: string) {
|
|
|
45
45
|
throw new Error('No blocks parsed')
|
|
46
46
|
}
|
|
47
47
|
|
|
48
|
-
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]
|
|
48
|
+
const alns = res.seqs.map((n, index) => ({ id: res.ids[index]!, seq: n }))
|
|
49
49
|
const { consensus } = res
|
|
50
50
|
const firstAln = alns[0]
|
|
51
51
|
if (!firstAln) {
|
package/src/util.ts
CHANGED
|
@@ -52,7 +52,7 @@ export function parseBlock(arr: Iterator<string>) {
|
|
|
52
52
|
}
|
|
53
53
|
const [start, end] = getSeqBounds(block[0]!)
|
|
54
54
|
const fields = block.map(s => s.split(/\s+/))
|
|
55
|
-
const ids = fields.map(s => s[0])
|
|
55
|
+
const ids = fields.map(s => s[0]!)
|
|
56
56
|
const seqs = block.map(s => s.slice(start, end))
|
|
57
57
|
let consensus = consensusLine.slice(start, end)
|
|
58
58
|
|