cloudmr-ux 2.0.7 → 3.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +24 -24
- package/dist/CmrComponents/CmrButton/CmrButton.css +0 -0
- package/dist/CmrComponents/CmrButton/CmrButton.d.ts +4 -0
- package/dist/CmrComponents/CmrButton/CmrButton.js +30 -0
- package/dist/CmrComponents/CmrButton/index.d.ts +1 -0
- package/dist/CmrComponents/CmrButton/index.js +1 -0
- package/dist/CmrComponents/CmrCheckbox/CmrCheckbox.css +29 -0
- package/dist/CmrComponents/CmrCheckbox/CmrCheckbox.d.ts +14 -0
- package/dist/CmrComponents/CmrCheckbox/CmrCheckbox.js +30 -0
- package/dist/CmrComponents/CmrCheckbox/index.d.ts +1 -0
- package/dist/CmrComponents/CmrCheckbox/index.js +1 -0
- package/dist/CmrComponents/CmrColorPicker/CmrColorPicker.d.ts +8 -0
- package/dist/CmrComponents/CmrColorPicker/CmrColorPicker.js +29 -0
- package/dist/CmrComponents/CmrColorPicker/CmrColorPicker.scss +27 -0
- package/dist/CmrComponents/CmrInput/CmrInput.css +27 -0
- package/dist/CmrComponents/CmrInput/CmrInput.d.ts +17 -0
- package/dist/CmrComponents/CmrInput/CmrInput.js +29 -0
- package/dist/CmrComponents/CmrInput/index.d.ts +1 -0
- package/dist/CmrComponents/CmrInput/index.js +1 -0
- package/dist/CmrComponents/CmrRadioGroup/CmrRadioGroup.css +25 -0
- package/dist/CmrComponents/CmrRadioGroup/CmrRadioGroup.d.ts +15 -0
- package/dist/CmrComponents/CmrRadioGroup/CmrRadioGroup.js +37 -0
- package/dist/CmrComponents/CmrRadioGroup/index.d.ts +1 -0
- package/dist/CmrComponents/CmrRadioGroup/index.js +1 -0
- package/dist/CmrComponents/CmrSelect/CmrSelect.css +1 -0
- package/dist/CmrComponents/CmrSelect/CmrSelect.d.ts +24 -0
- package/dist/CmrComponents/CmrSelect/CmrSelect.js +46 -0
- package/dist/CmrComponents/CmrSelect/index.d.ts +1 -0
- package/dist/CmrComponents/CmrSelect/index.js +1 -0
- package/dist/CmrComponents/checkbox/Checkbox.css +8 -0
- package/dist/CmrComponents/checkbox/Checkbox.d.ts +15 -0
- package/dist/CmrComponents/checkbox/Checkbox.js +25 -0
- package/dist/CmrComponents/collapse/Collapse.css +3 -0
- package/dist/CmrComponents/collapse/Collapse.d.ts +18 -0
- package/dist/CmrComponents/collapse/Collapse.js +87 -0
- package/dist/CmrComponents/dialogue/Confirmation.d.ts +20 -0
- package/dist/CmrComponents/dialogue/Confirmation.js +36 -0
- package/dist/CmrComponents/dialogue/DeletionDialog.d.ts +4 -0
- package/dist/CmrComponents/dialogue/DeletionDialog.js +39 -0
- package/dist/CmrComponents/dialogue/EditConfirmation.d.ts +13 -0
- package/dist/CmrComponents/dialogue/EditConfirmation.js +45 -0
- package/dist/CmrComponents/double-slider/DualSlider.d.ts +21 -0
- package/dist/CmrComponents/double-slider/DualSlider.js +152 -0
- package/dist/CmrComponents/double-slider/InvertibleDualSlider.d.ts +24 -0
- package/dist/CmrComponents/double-slider/InvertibleDualSlider.js +174 -0
- package/dist/CmrComponents/gui-slider/ControlledSlider.d.ts +9 -0
- package/dist/CmrComponents/gui-slider/ControlledSlider.js +96 -0
- package/dist/CmrComponents/gui-slider/Slider.d.ts +20 -0
- package/dist/CmrComponents/gui-slider/Slider.js +127 -0
- package/dist/CmrComponents/header/Header.d.ts +17 -0
- package/dist/CmrComponents/header/Header.js +90 -0
- package/dist/CmrComponents/header/Header.scss +32 -0
- package/dist/CmrComponents/input-number/InputNumber.css +0 -0
- package/dist/CmrComponents/input-number/InputNumber.d.ts +17 -0
- package/dist/CmrComponents/input-number/InputNumber.js +30 -0
- package/dist/CmrComponents/label/Label.css +13 -0
- package/dist/CmrComponents/label/Label.d.ts +9 -0
- package/dist/CmrComponents/label/Label.js +18 -0
- package/dist/CmrComponents/panel/Panel.css +5 -0
- package/dist/CmrComponents/panel/Panel.d.ts +12 -0
- package/dist/CmrComponents/panel/Panel.js +42 -0
- package/dist/CmrComponents/rename/edit.d.ts +7 -0
- package/dist/CmrComponents/rename/edit.js +117 -0
- package/dist/CmrComponents/select-upload/SelectUpload.css +26 -0
- package/dist/CmrComponents/select-upload/SelectUpload.d.ts +33 -0
- package/dist/CmrComponents/select-upload/SelectUpload.js +90 -0
- package/dist/CmrComponents/tk-dualrange/TKDualRange.d.ts +17 -0
- package/dist/CmrComponents/tk-dualrange/TKDualRange.js +65 -0
- package/dist/CmrComponents/tk-dualrange/tk-dual-range.css +140 -0
- package/dist/CmrComponents/tooltip/Tooltip.css +0 -0
- package/dist/CmrComponents/tooltip/Tooltip.d.ts +18 -0
- package/dist/CmrComponents/tooltip/Tooltip.js +30 -0
- package/dist/CmrComponents/upload/Upload.css +5 -0
- package/dist/CmrComponents/upload/Upload.d.ts +80 -0
- package/dist/CmrComponents/upload/Upload.js +185 -0
- package/dist/CmrComponents/upload/UploadWindow.d.ts +15 -0
- package/dist/CmrComponents/upload/UploadWindow.js +286 -0
- package/dist/CmrTable/CmrTable.css +26 -0
- package/dist/CmrTable/CmrTable.d.ts +13 -0
- package/dist/CmrTable/CmrTable.js +47 -0
- package/dist/CmrTabs/CmrTabs.d.ts +7 -0
- package/dist/CmrTabs/CmrTabs.js +64 -0
- package/dist/CmrTabs/tab.model.d.ts +12 -0
- package/dist/CmrTabs/tab.model.js +1 -0
- package/dist/core/app/main/Main.d.ts +6 -0
- package/dist/core/app/main/Main.js +18 -0
- package/dist/core/app/results/Logs.d.ts +1 -0
- package/dist/core/app/results/Logs.js +33 -0
- package/dist/core/app/results/PreprocessJob.d.ts +1 -0
- package/dist/core/app/results/PreprocessJob.js +100 -0
- package/dist/core/app/results/Results.d.ts +15 -0
- package/dist/core/app/results/Results.js +372 -0
- package/dist/core/app/results/Results.scss +92 -0
- package/dist/core/app/results/Rois.d.ts +11 -0
- package/dist/core/app/results/Rois.js +269 -0
- package/dist/core/app/settings/Settings.d.ts +1 -0
- package/dist/core/app/settings/Settings.js +109 -0
- package/dist/core/app/signin/ForgotPassword.d.ts +3 -0
- package/dist/core/app/signin/ForgotPassword.js +142 -0
- package/dist/core/app/signin/Register.d.ts +3 -0
- package/dist/core/app/signin/Register.js +126 -0
- package/dist/core/app/signin/Signin.d.ts +5 -0
- package/dist/core/app/signin/Signin.js +84 -0
- package/dist/core/app/signin/Signin.scss +86 -0
- package/dist/core/app/upload/Upload.d.ts +3 -0
- package/dist/core/app/upload/Upload.js +261 -0
- package/dist/core/app/upload/Upload.scss +0 -0
- package/dist/core/common/components/CmrColorPicker/CmrColorPicker.d.ts +8 -0
- package/dist/core/common/components/CmrColorPicker/CmrColorPicker.js +29 -0
- package/dist/core/common/components/CmrColorPicker/CmrColorPicker.scss +27 -0
- package/dist/core/common/components/NiivueTools/Niivue.css +8 -0
- package/dist/core/common/components/NiivueTools/Niivue.d.ts +14 -0
- package/dist/core/common/components/NiivueTools/Niivue.js +1270 -0
- package/dist/core/common/components/NiivueTools/NiivuePatcher.js +1875 -0
- package/dist/core/common/components/NiivueTools/components/ColorPicker.d.ts +5 -0
- package/dist/core/common/components/NiivueTools/components/ColorPicker.js +68 -0
- package/dist/core/common/components/NiivueTools/components/DrawPlatte.d.ts +10 -0
- package/dist/core/common/components/NiivueTools/components/DrawPlatte.js +88 -0
- package/dist/core/common/components/NiivueTools/components/DrawToolKit.d.ts +32 -0
- package/dist/core/common/components/NiivueTools/components/DrawToolKit.js +164 -0
- package/dist/core/common/components/NiivueTools/components/EraserPlatte.d.ts +10 -0
- package/dist/core/common/components/NiivueTools/components/EraserPlatte.js +43 -0
- package/dist/core/common/components/NiivueTools/components/Layer.d.ts +10 -0
- package/dist/core/common/components/NiivueTools/components/Layer.js +117 -0
- package/dist/core/common/components/NiivueTools/components/LayersPanel.d.ts +8 -0
- package/dist/core/common/components/NiivueTools/components/LayersPanel.js +108 -0
- package/dist/core/common/components/NiivueTools/components/LocationTable.d.ts +9 -0
- package/dist/core/common/components/NiivueTools/components/LocationTable.js +42 -0
- package/dist/core/common/components/NiivueTools/components/MaskPlatte.d.ts +10 -0
- package/dist/core/common/components/NiivueTools/components/MaskPlatte.js +123 -0
- package/dist/core/common/components/NiivueTools/components/NiivuePanel.d.ts +34 -0
- package/dist/core/common/components/NiivueTools/components/NiivuePanel.js +305 -0
- package/dist/core/common/components/NiivueTools/components/NumberPicker.d.ts +8 -0
- package/dist/core/common/components/NiivueTools/components/NumberPicker.js +40 -0
- package/dist/core/common/components/NiivueTools/components/SettingsPanel.d.ts +7 -0
- package/dist/core/common/components/NiivueTools/components/SettingsPanel.js +30 -0
- package/dist/core/common/components/NiivueTools/components/Switch.d.ts +5 -0
- package/dist/core/common/components/NiivueTools/components/Switch.js +26 -0
- package/dist/core/common/components/NiivueTools/components/Toolbar.d.ts +40 -0
- package/dist/core/common/components/NiivueTools/components/Toolbar.js +184 -0
- package/dist/core/common/components/NiivueTools/components/Toolbar.scss +39 -0
- package/dist/core/common/components/NiivueTools/components/stats.d.ts +2 -0
- package/dist/core/common/components/NiivueTools/components/stats.js +13 -0
- package/dist/core/common/components/NiivueTools/index.css +14 -0
- package/dist/core/common/components/NiivueTools/util.js +309 -0
- package/dist/core/common/components/footer/Footer.d.ts +3 -0
- package/dist/core/common/components/footer/Footer.js +20 -0
- package/dist/core/common/components/footer/Footer.scss +5 -0
- package/dist/core/common/utilities/AuthenticatedRequests.d.ts +16 -0
- package/dist/core/common/utilities/AuthenticatedRequests.js +158 -0
- package/dist/core/common/utilities/CalendarHelper.d.ts +5 -0
- package/dist/core/common/utilities/CalendarHelper.js +27 -0
- package/dist/core/common/utilities/DownloadFromText.d.ts +3 -0
- package/dist/core/common/utilities/DownloadFromText.js +20 -0
- package/dist/core/common/utilities/StoreToRequest.d.ts +1 -0
- package/dist/core/common/utilities/StoreToRequest.js +4 -0
- package/dist/core/common/utilities/SystemUtilities.d.ts +4 -0
- package/dist/core/common/utilities/SystemUtilities.js +79 -0
- package/dist/core/common/utilities/file-transformation/anonymize.d.ts +1 -0
- package/dist/core/common/utilities/file-transformation/anonymize.js +114 -0
- package/dist/core/common/utilities/file-transformation/utilities.d.ts +2 -0
- package/dist/core/common/utilities/file-transformation/utilities.js +23 -0
- package/dist/core/common/utilities/index.d.ts +25 -0
- package/dist/core/common/utilities/index.js +118 -0
- package/dist/core/common/utilities/parse-jwt.d.ts +1 -0
- package/dist/core/common/utilities/parse-jwt.js +14 -0
- package/dist/core/components/PasswordRequirements.d.ts +7 -0
- package/dist/core/components/PasswordRequirements.js +30 -0
- package/dist/core/config/AppConfig.d.ts +5 -0
- package/dist/core/config/AppConfig.js +42 -0
- package/dist/core/config/types.d.ts +40 -0
- package/dist/core/config/types.js +1 -0
- package/dist/core/features/authenticate/authenticateActionCreation.d.ts +46 -0
- package/dist/core/features/authenticate/authenticateActionCreation.js +326 -0
- package/dist/core/features/authenticate/authenticateSlice.d.ts +45 -0
- package/dist/core/features/authenticate/authenticateSlice.js +203 -0
- package/dist/core/features/data/dataActionCreation.d.ts +40 -0
- package/dist/core/features/data/dataActionCreation.js +340 -0
- package/dist/core/features/data/dataSlice.d.ts +37 -0
- package/dist/core/features/data/dataSlice.js +87 -0
- package/dist/core/features/jobs/jobActionCreation.d.ts +35 -0
- package/dist/core/features/jobs/jobActionCreation.js +242 -0
- package/dist/core/features/jobs/jobsSlice.d.ts +57 -0
- package/dist/core/features/jobs/jobsSlice.js +54 -0
- package/dist/core/features/rois/resultActionCreation.d.ts +21 -0
- package/dist/core/features/rois/resultActionCreation.js +114 -0
- package/dist/core/features/rois/resultSlice.d.ts +24 -0
- package/dist/core/features/rois/resultSlice.js +68 -0
- package/dist/core/features/rois/roiTypes.d.ts +44 -0
- package/dist/core/features/rois/roiTypes.js +1 -0
- package/dist/core/features/setup/setupActionCreation.d.ts +7 -0
- package/dist/core/features/setup/setupActionCreation.js +100 -0
- package/dist/core/index.d.ts +22 -0
- package/dist/core/index.js +27 -0
- package/dist/core/store/configureStore.d.ts +13 -0
- package/dist/core/store/configureStore.js +38 -0
- package/dist/core/store/hooks.d.ts +11 -0
- package/dist/core/store/hooks.js +5 -0
- package/dist/core/utils/passwordValidation.d.ts +25 -0
- package/dist/core/utils/passwordValidation.js +19 -0
- package/dist/index.d.ts +29 -329
- package/dist/index.js +26 -1402
- package/dist/style.css +47 -0
- package/package.json +309 -41
- package/dist/index.css +0 -170
- package/dist/index.mjs +0 -1354
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import { createAsyncThunk } from '@reduxjs/toolkit';
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import { getFileExtension } from "../../common/utilities/SystemUtilities";
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import { is_safe_twix } from "../../common/utilities/file-transformation/anonymize";
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import { AuthenticatedHttpClient } from '../../common/utilities/AuthenticatedRequests';
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import { getEndpoints } from '../../config/AppConfig';
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export var getUpstreamJobs = createAsyncThunk('GetJobs', function () { return __awaiter(void 0, void 0, void 0, function () {
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export var renameUpstreamJob = createAsyncThunk('RenameJob', function (arg) { return __awaiter(void 0, void 0, void 0, function () {
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return [4 /*yield*/, AuthenticatedHttpClient["delete"]("".concat(endpoints.JOBS_DELETE_API, "?id=").concat(arg.jobId))];
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export var uploadJob = createAsyncThunk('UploadJob', function (_a, thunkAPI) {
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var uploadToken = _a.uploadToken, file = _a.file, fileAlias = _a.fileAlias, onProgress = _a.onProgress, onUploaded = _a.onUploaded, uploadTarget = _a.uploadTarget;
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// thunkAPI.dispatch(setupSetters.setUploadProgress({target: uploadTarget, progress: 0}));
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function uploadPartWithRetries(partUrl, part, cancelTokenSource, index, retries) {
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+
_a.trys.push([0, 2, , 7]);
|
|
99
|
+
return [4 /*yield*/, AuthenticatedHttpClient.put(partUrl, part, {
|
|
100
|
+
headers: {
|
|
101
|
+
'Content-Type': ""
|
|
102
|
+
},
|
|
103
|
+
onUploadProgress: function (progressEvent) {
|
|
104
|
+
totalUploadedParts_1[index] = progressEvent.loaded;
|
|
105
|
+
var totalUploaded = totalUploadedParts_1.reduce(function (a, b) { return a + b; }, 0);
|
|
106
|
+
var totalProgress = totalUploaded / totalSize_1;
|
|
107
|
+
onProgress && onProgress(totalProgress);
|
|
108
|
+
// thunkAPI.dispatch(setupSetters.setUploadProgress({
|
|
109
|
+
// target: uploadTarget,
|
|
110
|
+
// progress: totalProgress
|
|
111
|
+
// }));
|
|
112
|
+
},
|
|
113
|
+
cancelToken: cancelTokenSource.token
|
|
114
|
+
})];
|
|
115
|
+
case 1:
|
|
116
|
+
response = _a.sent();
|
|
117
|
+
return [2 /*return*/, response];
|
|
118
|
+
case 2:
|
|
119
|
+
error_1 = _a.sent();
|
|
120
|
+
if (!axios.isCancel(error_1)) return [3 /*break*/, 3];
|
|
121
|
+
console.log('Upload cancelled:', partUrl);
|
|
122
|
+
return [3 /*break*/, 6];
|
|
123
|
+
case 3:
|
|
124
|
+
if (!(retries > 0)) return [3 /*break*/, 5];
|
|
125
|
+
console.log("Retrying upload for part: ".concat(partUrl, ", attempts remaining: ").concat(retries));
|
|
126
|
+
// Cancel the current request before retrying
|
|
127
|
+
cancelTokenSource.cancel('Cancelling the current request before retry.');
|
|
128
|
+
newCancelTokenSource = axios.CancelToken.source();
|
|
129
|
+
return [4 /*yield*/, uploadPartWithRetries(partUrl, part, newCancelTokenSource, index, retries - 1)];
|
|
130
|
+
case 4: return [2 /*return*/, _a.sent()];
|
|
131
|
+
case 5: throw error_1; // rethrow the error after exhausting retries
|
|
132
|
+
case 6: return [3 /*break*/, 7];
|
|
133
|
+
case 7: return [2 /*return*/];
|
|
134
|
+
}
|
|
135
|
+
});
|
|
136
|
+
});
|
|
137
|
+
}
|
|
138
|
+
var endpoints, FILE_CHUNK_SIZE, payload, initResponse, _b, uploadId, partUrls_1, Key, fileParts, i, part, totalSize_1, totalUploadedParts_1, uploadedParts, finalizeResponse, e_1;
|
|
139
|
+
return __generator(this, function (_c) {
|
|
140
|
+
switch (_c.label) {
|
|
141
|
+
case 0:
|
|
142
|
+
endpoints = getEndpoints();
|
|
143
|
+
_c.label = 1;
|
|
144
|
+
case 1:
|
|
145
|
+
_c.trys.push([1, 6, , 7]);
|
|
146
|
+
FILE_CHUNK_SIZE = 10 * 1024 * 1024;
|
|
147
|
+
return [4 /*yield*/, createPayload(uploadToken, file, fileAlias)];
|
|
148
|
+
case 2:
|
|
149
|
+
payload = _c.sent();
|
|
150
|
+
if (payload === undefined)
|
|
151
|
+
return [2 /*return*/, { code: 403, response: 'file not found', file: undefined, uploadTarget: uploadTarget }
|
|
152
|
+
// thunkAPI.dispatch(setupSetters.setUploadProgress({target: uploadTarget, progress: 0}));
|
|
153
|
+
// @ts-ignore
|
|
154
|
+
];
|
|
155
|
+
return [4 /*yield*/, AuthenticatedHttpClient.post(payload.destination, payload.lambdaFile, payload.config)];
|
|
156
|
+
case 3:
|
|
157
|
+
initResponse = _c.sent();
|
|
158
|
+
console.log(initResponse);
|
|
159
|
+
_b = initResponse.data, uploadId = _b.uploadId, partUrls_1 = _b.partUrls, Key = _b.Key;
|
|
160
|
+
fileParts = [];
|
|
161
|
+
for (i = 0; i < file.size; i += FILE_CHUNK_SIZE) {
|
|
162
|
+
part = file.slice(i, i + FILE_CHUNK_SIZE);
|
|
163
|
+
fileParts.push(part);
|
|
164
|
+
}
|
|
165
|
+
totalSize_1 = payload.file.size;
|
|
166
|
+
totalUploadedParts_1 = new Array(fileParts.length).fill(0);
|
|
167
|
+
return [4 /*yield*/, Promise.all(fileParts.map(function (part, index) { return __awaiter(void 0, void 0, void 0, function () {
|
|
168
|
+
var partUrl, cancelTokenSource, partResponse, etag;
|
|
169
|
+
return __generator(this, function (_a) {
|
|
170
|
+
switch (_a.label) {
|
|
171
|
+
case 0:
|
|
172
|
+
partUrl = partUrls_1[index];
|
|
173
|
+
cancelTokenSource = axios.CancelToken.source();
|
|
174
|
+
return [4 /*yield*/, uploadPartWithRetries(partUrl, part, cancelTokenSource, index)];
|
|
175
|
+
case 1:
|
|
176
|
+
partResponse = _a.sent();
|
|
177
|
+
etag = partResponse === null || partResponse === void 0 ? void 0 : partResponse.headers['etag'].replace(/"/g, '');
|
|
178
|
+
return [2 /*return*/, { partNumber: index + 1, etag: etag }];
|
|
179
|
+
}
|
|
180
|
+
});
|
|
181
|
+
}); }))];
|
|
182
|
+
case 4:
|
|
183
|
+
uploadedParts = _c.sent();
|
|
184
|
+
return [4 /*yield*/, axios.post(endpoints.JOB_UPLOAD_FINALIZE, {
|
|
185
|
+
uploadId: uploadId,
|
|
186
|
+
parts: uploadedParts,
|
|
187
|
+
Key: Key
|
|
188
|
+
}, payload.config)];
|
|
189
|
+
case 5:
|
|
190
|
+
finalizeResponse = _c.sent();
|
|
191
|
+
console.log(finalizeResponse);
|
|
192
|
+
console.log('all uploads completed');
|
|
193
|
+
if (onUploaded)
|
|
194
|
+
onUploaded(initResponse, file);
|
|
195
|
+
thunkAPI.dispatch(getUpstreamJobs());
|
|
196
|
+
return [2 /*return*/, { code: 200, response: initResponse.data.response, file: payload.lambdaFile, uploadTarget: uploadTarget }];
|
|
197
|
+
case 6:
|
|
198
|
+
e_1 = _c.sent();
|
|
199
|
+
console.log("Following error encountered during uploading:");
|
|
200
|
+
console.error(e_1);
|
|
201
|
+
return [2 /*return*/, { code: 500, response: e_1.response, file: undefined, uploadTarget: uploadTarget }];
|
|
202
|
+
case 7: return [2 /*return*/];
|
|
203
|
+
}
|
|
204
|
+
});
|
|
205
|
+
});
|
|
206
|
+
});
|
|
207
|
+
var createPayload = function (uploadToken, file, fileAlias) { return __awaiter(void 0, void 0, void 0, function () {
|
|
208
|
+
var endpoints, lambdaFile, fileExtension, safe, UploadHeaders;
|
|
209
|
+
return __generator(this, function (_a) {
|
|
210
|
+
switch (_a.label) {
|
|
211
|
+
case 0:
|
|
212
|
+
endpoints = getEndpoints();
|
|
213
|
+
if (!file) return [3 /*break*/, 3];
|
|
214
|
+
lambdaFile = {
|
|
215
|
+
"filename": fileAlias,
|
|
216
|
+
"filetype": file.type,
|
|
217
|
+
"filesize": "".concat(file.size),
|
|
218
|
+
"filemd5": '',
|
|
219
|
+
"file": file
|
|
220
|
+
};
|
|
221
|
+
console.log(file.type);
|
|
222
|
+
fileExtension = getFileExtension(file.name);
|
|
223
|
+
if (!(fileExtension === 'dat')) return [3 /*break*/, 2];
|
|
224
|
+
return [4 /*yield*/, is_safe_twix(file)];
|
|
225
|
+
case 1:
|
|
226
|
+
safe = _a.sent();
|
|
227
|
+
if (!safe) {
|
|
228
|
+
alert('This file contains PIH data. Please anonymize the file before uploading');
|
|
229
|
+
return [2 /*return*/, undefined];
|
|
230
|
+
}
|
|
231
|
+
_a.label = 2;
|
|
232
|
+
case 2:
|
|
233
|
+
UploadHeaders = {
|
|
234
|
+
headers: {
|
|
235
|
+
'Content-Type': 'application/json'
|
|
236
|
+
}
|
|
237
|
+
};
|
|
238
|
+
return [2 /*return*/, { destination: endpoints.JOB_UPLOAD_INIT, lambdaFile: lambdaFile, file: file, config: UploadHeaders }];
|
|
239
|
+
case 3: return [2 /*return*/];
|
|
240
|
+
}
|
|
241
|
+
});
|
|
242
|
+
}); };
|
|
@@ -0,0 +1,57 @@
|
|
|
1
|
+
import { PayloadAction } from '@reduxjs/toolkit';
|
|
2
|
+
import { UploadedFile } from "../data/dataSlice";
|
|
3
|
+
export interface Job {
|
|
4
|
+
id: number;
|
|
5
|
+
alias: string;
|
|
6
|
+
status: string;
|
|
7
|
+
pipeline_id: string;
|
|
8
|
+
createdAt: string;
|
|
9
|
+
updatedAt: string;
|
|
10
|
+
setup: any;
|
|
11
|
+
files: UploadedFile[];
|
|
12
|
+
logs?: LogItem[];
|
|
13
|
+
slices?: number;
|
|
14
|
+
}
|
|
15
|
+
export interface LogItem {
|
|
16
|
+
type: string;
|
|
17
|
+
when: string;
|
|
18
|
+
what: string;
|
|
19
|
+
}
|
|
20
|
+
interface JobsState {
|
|
21
|
+
jobs: Array<Job>;
|
|
22
|
+
loading: boolean;
|
|
23
|
+
submittingText: string;
|
|
24
|
+
}
|
|
25
|
+
export declare const jobsSlice: import("@reduxjs/toolkit").Slice<JobsState, {
|
|
26
|
+
/**
|
|
27
|
+
* Delete job referenced by its index
|
|
28
|
+
* @param state
|
|
29
|
+
* @param action
|
|
30
|
+
*/
|
|
31
|
+
renameJob(state: JobsState, action: PayloadAction<{
|
|
32
|
+
index: number;
|
|
33
|
+
alias: string;
|
|
34
|
+
}>): void;
|
|
35
|
+
deleteJob(state: JobsState, action: PayloadAction<{
|
|
36
|
+
index: number;
|
|
37
|
+
}>): void;
|
|
38
|
+
resetSubmissionState(state: JobsState): void;
|
|
39
|
+
setSubmittingText(state: import("immer").WritableDraft<JobsState>, action: PayloadAction<string>): void;
|
|
40
|
+
}, "job", "job", import("@reduxjs/toolkit").SliceSelectors<JobsState>>;
|
|
41
|
+
export declare const jobActions: import("@reduxjs/toolkit").CaseReducerActions<{
|
|
42
|
+
/**
|
|
43
|
+
* Delete job referenced by its index
|
|
44
|
+
* @param state
|
|
45
|
+
* @param action
|
|
46
|
+
*/
|
|
47
|
+
renameJob(state: JobsState, action: PayloadAction<{
|
|
48
|
+
index: number;
|
|
49
|
+
alias: string;
|
|
50
|
+
}>): void;
|
|
51
|
+
deleteJob(state: JobsState, action: PayloadAction<{
|
|
52
|
+
index: number;
|
|
53
|
+
}>): void;
|
|
54
|
+
resetSubmissionState(state: JobsState): void;
|
|
55
|
+
setSubmittingText(state: import("immer").WritableDraft<JobsState>, action: PayloadAction<string>): void;
|
|
56
|
+
}, "job">;
|
|
57
|
+
export {};
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
import { createSlice } from '@reduxjs/toolkit';
|
|
2
|
+
import { getUpstreamJobs } from './jobActionCreation';
|
|
3
|
+
import { convertTimestamp } from "../../common/utilities/CalendarHelper";
|
|
4
|
+
var initialState = {
|
|
5
|
+
jobs: [],
|
|
6
|
+
loading: true,
|
|
7
|
+
submittingText: 'Submitting Jobs...'
|
|
8
|
+
};
|
|
9
|
+
export var jobsSlice = createSlice({
|
|
10
|
+
name: 'job',
|
|
11
|
+
initialState: initialState,
|
|
12
|
+
reducers: {
|
|
13
|
+
// submitJob(state: JobsState, action: PayloadAction<SNR>){
|
|
14
|
+
// state.jobs.push({
|
|
15
|
+
// setup:action.payload, alias: "", createdAt: "", files: [], id: 0, status: "", updatedAt: ""
|
|
16
|
+
// });
|
|
17
|
+
// },
|
|
18
|
+
/**
|
|
19
|
+
* Delete job referenced by its index
|
|
20
|
+
* @param state
|
|
21
|
+
* @param action
|
|
22
|
+
*/
|
|
23
|
+
renameJob: function (state, action) {
|
|
24
|
+
state.jobs[action.payload.index].alias = action.payload.alias;
|
|
25
|
+
},
|
|
26
|
+
deleteJob: function (state, action) {
|
|
27
|
+
state.jobs.splice(action.payload.index, 1);
|
|
28
|
+
},
|
|
29
|
+
resetSubmissionState: function (state) {
|
|
30
|
+
state.submittingText = 'Submitting jobs...';
|
|
31
|
+
},
|
|
32
|
+
setSubmittingText: function (state, action) {
|
|
33
|
+
state.submittingText = action.payload;
|
|
34
|
+
}
|
|
35
|
+
},
|
|
36
|
+
extraReducers: function (builder) { return (builder.addCase(getUpstreamJobs.pending, function (state, action) {
|
|
37
|
+
state.loading = true;
|
|
38
|
+
}),
|
|
39
|
+
builder.addCase(getUpstreamJobs.fulfilled, function (state, action) {
|
|
40
|
+
var data = [];
|
|
41
|
+
var payloadData = action.payload;
|
|
42
|
+
if (payloadData.jobs.length > 0) {
|
|
43
|
+
payloadData.jobs.forEach(function (element) {
|
|
44
|
+
element.createdAt = convertTimestamp(element.createdAt);
|
|
45
|
+
data.push(element);
|
|
46
|
+
});
|
|
47
|
+
}
|
|
48
|
+
state.jobs = data;
|
|
49
|
+
// state.jobs = [sampleJob]
|
|
50
|
+
state.loading = false;
|
|
51
|
+
state.submittingText = 'Jobs submitted!';
|
|
52
|
+
})); }
|
|
53
|
+
});
|
|
54
|
+
export var jobActions = jobsSlice.actions;
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
import { Job } from "../jobs/jobsSlice";
|
|
2
|
+
export declare const getPipelineROI: import("@reduxjs/toolkit").AsyncThunk<{
|
|
3
|
+
rois: any;
|
|
4
|
+
pipeline_id: string;
|
|
5
|
+
}, {
|
|
6
|
+
pipeline: string;
|
|
7
|
+
}, import("@reduxjs/toolkit").AsyncThunkConfig>;
|
|
8
|
+
export declare function niiToVolume(nii: any): {
|
|
9
|
+
url: any;
|
|
10
|
+
name: string;
|
|
11
|
+
alias: any;
|
|
12
|
+
};
|
|
13
|
+
export declare const loadResult: import("@reduxjs/toolkit").AsyncThunk<{
|
|
14
|
+
pipelineID: string;
|
|
15
|
+
job: Job;
|
|
16
|
+
volumes: any[];
|
|
17
|
+
niis: any[];
|
|
18
|
+
result: any;
|
|
19
|
+
}, {
|
|
20
|
+
job: Job;
|
|
21
|
+
}, import("@reduxjs/toolkit").AsyncThunkConfig>;
|
|
@@ -0,0 +1,114 @@
|
|
|
1
|
+
var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
|
|
2
|
+
function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
|
|
3
|
+
return new (P || (P = Promise))(function (resolve, reject) {
|
|
4
|
+
function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
|
|
5
|
+
function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
|
|
6
|
+
function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
|
|
7
|
+
step((generator = generator.apply(thisArg, _arguments || [])).next());
|
|
8
|
+
});
|
|
9
|
+
};
|
|
10
|
+
var __generator = (this && this.__generator) || function (thisArg, body) {
|
|
11
|
+
var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
|
|
12
|
+
return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
|
|
13
|
+
function verb(n) { return function (v) { return step([n, v]); }; }
|
|
14
|
+
function step(op) {
|
|
15
|
+
if (f) throw new TypeError("Generator is already executing.");
|
|
16
|
+
while (g && (g = 0, op[0] && (_ = 0)), _) try {
|
|
17
|
+
if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
|
|
18
|
+
if (y = 0, t) op = [op[0] & 2, t.value];
|
|
19
|
+
switch (op[0]) {
|
|
20
|
+
case 0: case 1: t = op; break;
|
|
21
|
+
case 4: _.label++; return { value: op[1], done: false };
|
|
22
|
+
case 5: _.label++; y = op[1]; op = [0]; continue;
|
|
23
|
+
case 7: op = _.ops.pop(); _.trys.pop(); continue;
|
|
24
|
+
default:
|
|
25
|
+
if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
|
|
26
|
+
if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
|
|
27
|
+
if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
|
|
28
|
+
if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
|
|
29
|
+
if (t[2]) _.ops.pop();
|
|
30
|
+
_.trys.pop(); continue;
|
|
31
|
+
}
|
|
32
|
+
op = body.call(thisArg, _);
|
|
33
|
+
} catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
|
|
34
|
+
if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
|
|
35
|
+
}
|
|
36
|
+
};
|
|
37
|
+
import { createAsyncThunk } from "@reduxjs/toolkit";
|
|
38
|
+
import { getEndpoints } from "../../config/AppConfig";
|
|
39
|
+
import { AuthenticatedHttpClient } from "../../common/utilities/AuthenticatedRequests";
|
|
40
|
+
export var getPipelineROI = createAsyncThunk("GetROI", function (_a) {
|
|
41
|
+
var pipeline = _a.pipeline;
|
|
42
|
+
return __awaiter(void 0, void 0, void 0, function () {
|
|
43
|
+
var endpoints, config, response;
|
|
44
|
+
return __generator(this, function (_b) {
|
|
45
|
+
switch (_b.label) {
|
|
46
|
+
case 0:
|
|
47
|
+
endpoints = getEndpoints();
|
|
48
|
+
config = {
|
|
49
|
+
params: {
|
|
50
|
+
pipeline_id: pipeline
|
|
51
|
+
}
|
|
52
|
+
};
|
|
53
|
+
return [4 /*yield*/, AuthenticatedHttpClient.get(endpoints.ROI_GET, config)];
|
|
54
|
+
case 1:
|
|
55
|
+
response = _b.sent();
|
|
56
|
+
// console.log(response);
|
|
57
|
+
return [2 /*return*/, { rois: response.data, pipeline_id: pipeline }];
|
|
58
|
+
}
|
|
59
|
+
});
|
|
60
|
+
});
|
|
61
|
+
});
|
|
62
|
+
export function niiToVolume(nii) {
|
|
63
|
+
return {
|
|
64
|
+
//URL is for NiiVue blob loading
|
|
65
|
+
url: nii.link,
|
|
66
|
+
//name is for NiiVue name replacer (needs proper extension like .nii)
|
|
67
|
+
name: nii.filename.split("/").pop(),
|
|
68
|
+
//alias is for user selection in toolbar
|
|
69
|
+
alias: nii.name
|
|
70
|
+
};
|
|
71
|
+
}
|
|
72
|
+
export var loadResult = createAsyncThunk("LoadResult", function (_a) {
|
|
73
|
+
var job = _a.job;
|
|
74
|
+
return __awaiter(void 0, void 0, void 0, function () {
|
|
75
|
+
var endpoints, volumes, file, result, niis;
|
|
76
|
+
return __generator(this, function (_b) {
|
|
77
|
+
switch (_b.label) {
|
|
78
|
+
case 0:
|
|
79
|
+
endpoints = getEndpoints();
|
|
80
|
+
volumes = [];
|
|
81
|
+
file = job.files[0];
|
|
82
|
+
return [4 /*yield*/, AuthenticatedHttpClient.post(endpoints.UNZIP, JSON.parse(file.location), {
|
|
83
|
+
timeout: 100000000
|
|
84
|
+
})];
|
|
85
|
+
case 1:
|
|
86
|
+
result = (_b.sent()).data;
|
|
87
|
+
niis = result.data;
|
|
88
|
+
// console.log(niis);
|
|
89
|
+
niis.forEach(function (value) {
|
|
90
|
+
// console.log(value);
|
|
91
|
+
volumes.push({
|
|
92
|
+
//URL is for NiiVue blob loading
|
|
93
|
+
url: value.link,
|
|
94
|
+
//name is for NiiVue name replacer (needs proper extension like .nii)
|
|
95
|
+
name: value.filename.split("/").pop(),
|
|
96
|
+
//alias is for user selection in toolbar
|
|
97
|
+
alias: value.name
|
|
98
|
+
});
|
|
99
|
+
});
|
|
100
|
+
return [2 /*return*/, { pipelineID: job.pipeline_id, job: job, volumes: volumes, niis: niis, result: result }];
|
|
101
|
+
}
|
|
102
|
+
});
|
|
103
|
+
});
|
|
104
|
+
}, {
|
|
105
|
+
// Adding extra information to the meta field
|
|
106
|
+
getPendingMeta: function (_a) {
|
|
107
|
+
var arg = _a.arg, requestId = _a.requestId;
|
|
108
|
+
// console.log('Pending Meta:');
|
|
109
|
+
return {
|
|
110
|
+
jobId: arg.job.id,
|
|
111
|
+
requestId: requestId
|
|
112
|
+
};
|
|
113
|
+
}
|
|
114
|
+
});
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
import { ROIState } from "./roiTypes";
|
|
2
|
+
import { Job } from "../jobs/jobsSlice";
|
|
3
|
+
import { PayloadAction } from "@reduxjs/toolkit";
|
|
4
|
+
export declare const initialState: ROIState;
|
|
5
|
+
export declare const resultSlice: import("@reduxjs/toolkit").Slice<ROIState, {
|
|
6
|
+
setPipelineID(state: ROIState, action: PayloadAction<Job>): void;
|
|
7
|
+
selectVolume(state: ROIState, action: PayloadAction<number>): void;
|
|
8
|
+
setOpenPanel(state: ROIState, action: PayloadAction<number[]>): void;
|
|
9
|
+
}, "job", "job", import("@reduxjs/toolkit").SliceSelectors<ROIState>>;
|
|
10
|
+
declare const _default: import("@reduxjs/toolkit").CaseReducerActions<{
|
|
11
|
+
setPipelineID(state: ROIState, action: {
|
|
12
|
+
payload: Job;
|
|
13
|
+
type: string;
|
|
14
|
+
}): void;
|
|
15
|
+
selectVolume(state: ROIState, action: {
|
|
16
|
+
payload: number;
|
|
17
|
+
type: string;
|
|
18
|
+
}): void;
|
|
19
|
+
setOpenPanel(state: ROIState, action: {
|
|
20
|
+
payload: number[];
|
|
21
|
+
type: string;
|
|
22
|
+
}): void;
|
|
23
|
+
}, "job">;
|
|
24
|
+
export default _default;
|
|
@@ -0,0 +1,68 @@
|
|
|
1
|
+
import { createSlice } from "@reduxjs/toolkit";
|
|
2
|
+
import { loadResult, getPipelineROI } from "./resultActionCreation";
|
|
3
|
+
export var initialState = {
|
|
4
|
+
rois: {},
|
|
5
|
+
niis: { "-1": [] },
|
|
6
|
+
resultLoading: -1,
|
|
7
|
+
loading: false,
|
|
8
|
+
activeJob: undefined,
|
|
9
|
+
selectedVolume: 2,
|
|
10
|
+
openPanel: [0]
|
|
11
|
+
};
|
|
12
|
+
export var resultSlice = createSlice({
|
|
13
|
+
name: "job",
|
|
14
|
+
initialState: initialState,
|
|
15
|
+
reducers: {
|
|
16
|
+
setPipelineID: function (state, action) {
|
|
17
|
+
state.activeJob = action.payload;
|
|
18
|
+
},
|
|
19
|
+
selectVolume: function (state, action) {
|
|
20
|
+
state.selectedVolume = action.payload;
|
|
21
|
+
},
|
|
22
|
+
setOpenPanel: function (state, action) {
|
|
23
|
+
state.openPanel = action.payload;
|
|
24
|
+
}
|
|
25
|
+
},
|
|
26
|
+
extraReducers: function (builder) { return (builder.addCase(getPipelineROI.pending, function (state, action) {
|
|
27
|
+
state.loading = true;
|
|
28
|
+
}),
|
|
29
|
+
builder.addCase(getPipelineROI.fulfilled, function (state, action) {
|
|
30
|
+
var _a = action.payload, rois = _a.rois, pipeline_id = _a.pipeline_id;
|
|
31
|
+
state.rois[pipeline_id] = [];
|
|
32
|
+
if (rois.length > 0) {
|
|
33
|
+
rois.forEach(function (element) {
|
|
34
|
+
if (state.rois[pipeline_id] == undefined)
|
|
35
|
+
state.rois[pipeline_id] = [];
|
|
36
|
+
state.rois[pipeline_id].push(element);
|
|
37
|
+
});
|
|
38
|
+
}
|
|
39
|
+
state.loading = false;
|
|
40
|
+
}),
|
|
41
|
+
builder.addCase(loadResult.pending, function (state, action) {
|
|
42
|
+
// @ts-ignore
|
|
43
|
+
state.resultLoading = action.meta.jobId;
|
|
44
|
+
}),
|
|
45
|
+
builder.addCase(loadResult.fulfilled, function (state, action) {
|
|
46
|
+
var _a;
|
|
47
|
+
// console.log(action.payload);
|
|
48
|
+
state.activeJob = action.payload.job;
|
|
49
|
+
//@ts-ignore
|
|
50
|
+
state.activeJob.setup = { alias: "-", version: "v0" };
|
|
51
|
+
//@ts-ignore
|
|
52
|
+
state.activeJob.setup.task = action.payload.result.headers.options;
|
|
53
|
+
//@ts-ignore
|
|
54
|
+
state.activeJob.logs =
|
|
55
|
+
action.payload.result.log || action.payload.result.headers.log;
|
|
56
|
+
//@ts-ignore
|
|
57
|
+
state.activeJob.slices = (_a = action.payload.result.info) === null || _a === void 0 ? void 0 : _a.slices;
|
|
58
|
+
//@ts-ignore
|
|
59
|
+
state.niis[state.activeJob.pipeline_id] = action.payload.niis;
|
|
60
|
+
state.selectedVolume = 1;
|
|
61
|
+
//ts-ignore
|
|
62
|
+
state.resultLoading = -1;
|
|
63
|
+
}),
|
|
64
|
+
builder.addCase(loadResult.rejected, function (state, action) {
|
|
65
|
+
state.resultLoading = -1;
|
|
66
|
+
})); }
|
|
67
|
+
});
|
|
68
|
+
export default resultSlice.actions;
|
|
@@ -0,0 +1,44 @@
|
|
|
1
|
+
import { Job } from '../jobs/jobsSlice';
|
|
2
|
+
export interface ROI {
|
|
3
|
+
id: number;
|
|
4
|
+
created_at: string;
|
|
5
|
+
updated_at: string;
|
|
6
|
+
location: string;
|
|
7
|
+
link: string;
|
|
8
|
+
filename: string;
|
|
9
|
+
size: null | number;
|
|
10
|
+
md5: null | string;
|
|
11
|
+
status: string;
|
|
12
|
+
database: string;
|
|
13
|
+
type: string;
|
|
14
|
+
pivot: {
|
|
15
|
+
pipeline_id: string;
|
|
16
|
+
roi_id: string;
|
|
17
|
+
};
|
|
18
|
+
}
|
|
19
|
+
export interface Volume {
|
|
20
|
+
name: string;
|
|
21
|
+
url: string;
|
|
22
|
+
alias: string;
|
|
23
|
+
}
|
|
24
|
+
export interface NiiFile {
|
|
25
|
+
filename: string;
|
|
26
|
+
id: number;
|
|
27
|
+
dim: number;
|
|
28
|
+
name: string;
|
|
29
|
+
type: string;
|
|
30
|
+
link: string;
|
|
31
|
+
}
|
|
32
|
+
export interface ROIState {
|
|
33
|
+
rois: {
|
|
34
|
+
[pipeline_id: string]: ROI[];
|
|
35
|
+
};
|
|
36
|
+
resultLoading: number;
|
|
37
|
+
loading: boolean;
|
|
38
|
+
niis: {
|
|
39
|
+
[pipeline_id: string]: NiiFile[];
|
|
40
|
+
};
|
|
41
|
+
activeJob?: Job;
|
|
42
|
+
selectedVolume: number;
|
|
43
|
+
openPanel: number[];
|
|
44
|
+
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export {};
|