clinkx 1.1.1 → 1.2.0

package/clinkx-workflows/dist/index.js.map

@@ -1 +1 @@
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package/clinkx-workflows/dist/reducers/index.d.ts

@@ -4,5 +4,13 @@
  * Reducers run in place of LLM calls when a call specifies a `reducer` ID.
  */
 import type { ArtifactRecord } from "../artifacts.js";
-export type ReducerFn = (artifacts: readonly ArtifactRecord[]) => string;
+import type { ArchitectureComparisonRuntime } from "../architecture-comparison/runtime.js";
+import type { VerifiedRepairRuntime } from "../verified-repair/runtime.js";
+export interface ReducerContext {
+    readonly variables: Readonly<Record<string, unknown>>;
+    readonly architectureComparison?: ArchitectureComparisonRuntime | undefined;
+    readonly verifiedRepair?: VerifiedRepairRuntime | undefined;
+    readonly signal?: AbortSignal | undefined;
+}
+export type ReducerFn = (artifacts: readonly ArtifactRecord[], context?: ReducerContext) => string | Promise<string>;
 export declare function getReducer(id: string): ReducerFn | undefined;

package/clinkx-workflows/dist/reducers/index.js

@@ -8,6 +8,28 @@ import { councilRankingReducer } from "../ranking-reducer.js";
 const registry = new Map();
 registry.set("council_ranking_v1", councilRankingReducer);
 registry.set("plan_review_ranking_v1", planReviewRankingReducer);
+registry.set("architecture_freeze_v1", (_artifacts, context) => {
+    if (context?.architectureComparison === undefined)
+        throw new Error("architecture freeze reducer requires its workflow contract");
+    return context.architectureComparison.freeze(context.variables);
+});
+registry.set("architecture_view_v1", (artifacts, context) => {
+    if (context?.architectureComparison === undefined)
+        throw new Error("architecture judge view reducer requires its workflow contract");
+    return context.architectureComparison.makeJudgeView(artifacts);
+});
+registry.set("architecture_record_v1", (artifacts, context) => {
+    if (context?.architectureComparison === undefined)
+        throw new Error("architecture record reducer requires its workflow contract");
+    return context.architectureComparison.comparison(artifacts);
+});
+for (const operation of ["capture", "reproduce", "fixed", "independent", "record"]) {
+    registry.set(`repair_${operation}_v1`, (artifacts, context) => {
+        if (context?.verifiedRepair === undefined)
+            throw new Error("verified repair reducer requires a prepared root host");
+        return context.verifiedRepair.reduce(operation, artifacts, context.signal);
+    });
+}
 export function getReducer(id) {
     return registry.get(id);
 }

package/clinkx-workflows/dist/reducers/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/reducers/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAE,wBAAwB,EAAE,MAAM,mCAAmC,CAAC;AAC7E,OAAO,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC;AAI9D,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAqB,CAAC;AAC9C,QAAQ,CAAC,GAAG,CAAC,oBAAoB,EAAE,qBAAqB,CAAC,CAAC;AAC1D,QAAQ,CAAC,GAAG,CAAC,wBAAwB,EAAE,wBAAwB,CAAC,CAAC;AAEjE,MAAM,UAAU,UAAU,CAAC,EAAU;IACnC,OAAO,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;AAC1B,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/reducers/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAE,wBAAwB,EAAE,MAAM,mCAAmC,CAAC;AAC7E,OAAO,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC;AAY9D,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAqB,CAAC;AAC9C,QAAQ,CAAC,GAAG,CAAC,oBAAoB,EAAE,qBAAqB,CAAC,CAAC;AAC1D,QAAQ,CAAC,GAAG,CAAC,wBAAwB,EAAE,wBAAwB,CAAC,CAAC;AACjE,QAAQ,CAAC,GAAG,CAAC,wBAAwB,EAAE,CAAC,UAAU,EAAE,OAAO,EAAE,EAAE;IAC7D,IAAI,OAAO,EAAE,sBAAsB,KAAK,SAAS;QAAE,MAAM,IAAI,KAAK,CAAC,4DAA4D,CAAC,CAAC;IACjI,OAAO,OAAO,CAAC,sBAAsB,CAAC,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;AAClE,CAAC,CAAC,CAAC;AACH,QAAQ,CAAC,GAAG,CAAC,sBAAsB,EAAE,CAAC,SAAS,EAAE,OAAO,EAAE,EAAE;IAC1D,IAAI,OAAO,EAAE,sBAAsB,KAAK,SAAS;QAAE,MAAM,IAAI,KAAK,CAAC,gEAAgE,CAAC,CAAC;IACrI,OAAO,OAAO,CAAC,sBAAsB,CAAC,aAAa,CAAC,SAAS,CAAC,CAAC;AACjE,CAAC,CAAC,CAAC;AACH,QAAQ,CAAC,GAAG,CAAC,wBAAwB,EAAE,CAAC,SAAS,EAAE,OAAO,EAAE,EAAE;IAC5D,IAAI,OAAO,EAAE,sBAAsB,KAAK,SAAS;QAAE,MAAM,IAAI,KAAK,CAAC,4DAA4D,CAAC,CAAC;IACjI,OAAO,OAAO,CAAC,sBAAsB,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC;AAC9D,CAAC,CAAC,CAAC;AAEH,KAAK,MAAM,SAAS,IAAI,CAAC,SAAS,EAAE,WAAW,EAAE,OAAO,EAAE,aAAa,EAAE,QAAQ,CAAU,EAAE,CAAC;IAC5F,QAAQ,CAAC,GAAG,CAAC,UAAU,SAAS,KAAK,EAAE,CAAC,SAAS,EAAE,OAAO,EAAE,EAAE;QAC5D,IAAI,OAAO,EAAE,cAAc,KAAK,SAAS;YAAE,MAAM,IAAI,KAAK,CAAC,uDAAuD,CAAC,CAAC;QACpH,OAAO,OAAO,CAAC,cAAc,CAAC,MAAM,CAAC,SAAS,EAAE,SAAS,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;IAC7E,CAAC,CAAC,CAAC;AACL,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,EAAU;IACnC,OAAO,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;AAC1B,CAAC"}

package/clinkx-workflows/dist/root-path-validation.d.ts

@@ -0,0 +1,12 @@
+export type DirectoryIdentity = {
+    lexical: string;
+    canonical: string;
+    exists: boolean;
+};
+/** Resolve missing suffixes against the nearest existing directory without creating them. */
+export declare function directoryIdentity(root: string, label: string): DirectoryIdentity;
+export declare function isFilesystemRootIdentity(identity: DirectoryIdentity): boolean;
+/** Component-aware: `/a/b` is an ancestor of `/a/b/c` but not of `/a/bc`. */
+export declare function isStrictAncestorPath(ancestor: string, descendant: string): boolean;
+export declare function assertNoRootDelimiter(root: string, label: string): void;
+export declare function assertRootRepresentable(root: string, label: string): DirectoryIdentity;

package/clinkx-workflows/dist/root-path-validation.js

@@ -0,0 +1,63 @@
+import { lstatSync, realpathSync, statSync } from "node:fs";
+import { basename, dirname, join, parse, resolve, sep } from "node:path";
+/** Resolve missing suffixes against the nearest existing directory without creating them. */
+export function directoryIdentity(root, label) {
+    const lexical = resolve(root);
+    let ancestor = lexical;
+    const suffix = [];
+    while (true) {
+        try {
+            lstatSync(ancestor);
+        }
+        catch (error) {
+            if (error.code === "ENOENT" && dirname(ancestor) !== ancestor) {
+                suffix.unshift(basename(ancestor));
+                ancestor = dirname(ancestor);
+                continue;
+            }
+            throw directoryError(label, root, error);
+        }
+        try {
+            if (!statSync(ancestor).isDirectory()) {
+                throw new Error("not a directory");
+            }
+            return {
+                lexical,
+                canonical: join(realpathSync(ancestor), ...suffix),
+                exists: suffix.length === 0,
+            };
+        }
+        catch (error) {
+            throw directoryError(label, root, error);
+        }
+    }
+}
+export function isFilesystemRootIdentity(identity) {
+    return identity.lexical === parse(identity.lexical).root || identity.canonical === parse(identity.canonical).root;
+}
+/** Component-aware: `/a/b` is an ancestor of `/a/b/c` but not of `/a/bc`. */
+export function isStrictAncestorPath(ancestor, descendant) {
+    if (ancestor === descendant)
+        return false;
+    const prefix = ancestor.endsWith(sep) ? ancestor : `${ancestor}${sep}`;
+    return descendant.startsWith(prefix);
+}
+export function assertNoRootDelimiter(root, label) {
+    if (root.includes(",")) {
+        throw new Error(`${label} must not contain a comma: CLINKX_ALLOWED_ROOTS uses comma-separated paths; choose a comma-free directory`);
+    }
+}
+export function assertRootRepresentable(root, label) {
+    assertNoRootDelimiter(root, label);
+    const identity = directoryIdentity(root, label);
+    if (identity.canonical.includes(",")) {
+        throw new Error(`${label} resolves to a path containing a comma: CLINKX_ALLOWED_ROOTS uses comma-separated paths; choose a comma-free directory`);
+    }
+    return identity;
+}
+function directoryError(label, root, error) {
+    const code = error.code;
+    const detail = error instanceof Error ? error.message : String(error);
+    return new Error(`${label} must resolve to an accessible directory or a missing path beneath one; got ${JSON.stringify(root)} (${code ?? detail})`, { cause: error });
+}
+//# sourceMappingURL=root-path-validation.js.map

package/clinkx-workflows/dist/root-path-validation.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"root-path-validation.js","sourceRoot":"","sources":["../src/root-path-validation.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,YAAY,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AAC5D,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,OAAO,EAAE,GAAG,EAAE,MAAM,WAAW,CAAC;AAQzE,6FAA6F;AAC7F,MAAM,UAAU,iBAAiB,CAAC,IAAY,EAAE,KAAa;IAC3D,MAAM,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAC9B,IAAI,QAAQ,GAAG,OAAO,CAAC;IACvB,MAAM,MAAM,GAAa,EAAE,CAAC;IAC5B,OAAO,IAAI,EAAE,CAAC;QACZ,IAAI,CAAC;YACH,SAAS,CAAC,QAAQ,CAAC,CAAC;QACtB,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,IAAK,KAA+B,CAAC,IAAI,KAAK,QAAQ,IAAI,OAAO,CAAC,QAAQ,CAAC,KAAK,QAAQ,EAAE,CAAC;gBACzF,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC;gBACnC,QAAQ,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;gBAC7B,SAAS;YACX,CAAC;YACD,MAAM,cAAc,CAAC,KAAK,EAAE,IAAI,EAAE,KAAK,CAAC,CAAC;QAC3C,CAAC;QACD,IAAI,CAAC;YACH,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,EAAE,CAAC;gBACtC,MAAM,IAAI,KAAK,CAAC,iBAAiB,CAAC,CAAC;YACrC,CAAC;YACD,OAAO;gBACL,OAAO;gBACP,SAAS,EAAE,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,EAAE,GAAG,MAAM,CAAC;gBAClD,MAAM,EAAE,MAAM,CAAC,MAAM,KAAK,CAAC;aAC5B,CAAC;QACJ,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,cAAc,CAAC,KAAK,EAAE,IAAI,EAAE,KAAK,CAAC,CAAC;QAC3C,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,QAA2B;IAClE,OAAO,QAAQ,CAAC,OAAO,KAAK,KAAK,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,IAAI,IAAI,QAAQ,CAAC,SAAS,KAAK,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,IAAI,CAAC;AACpH,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,oBAAoB,CAAC,QAAgB,EAAE,UAAkB;IACvE,IAAI,QAAQ,KAAK,UAAU;QAAE,OAAO,KAAK,CAAC;IAC1C,MAAM,MAAM,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,QAAQ,GAAG,GAAG,EAAE,CAAC;IACvE,OAAO,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;AACvC,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,IAAY,EAAE,KAAa;IAC/D,IAAI,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,GAAG,KAAK,2GAA2G,CAAC,CAAC;IACvI,CAAC;AACH,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,IAAY,EAAE,KAAa;IACjE,qBAAqB,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IACnC,MAAM,QAAQ,GAAG,iBAAiB,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IAChD,IAAI,QAAQ,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QACrC,MAAM,IAAI,KAAK,CAAC,GAAG,KAAK,wHAAwH,CAAC,CAAC;IACpJ,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,SAAS,cAAc,CAAC,KAAa,EAAE,IAAY,EAAE,KAAc;IACjE,MAAM,IAAI,GAAI,KAA+B,CAAC,IAAI,CAAC;IACnD,MAAM,MAAM,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;IACtE,OAAO,IAAI,KAAK,CAAC,GAAG,KAAK,+EAA+E,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,IAAI,IAAI,MAAM,GAAG,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CAAC;AACxK,CAAC"}

package/clinkx-workflows/dist/rosters.d.ts

@@ -2,6 +2,7 @@ import { logger as defaultLogger } from "./logger.js";
 import { type AvailableRoster, type RosterPreset } from "./roster-contract.js";
 export interface RosterLoaderOptions {
     envPath?: string | undefined;
+    clinkxHomeDir?: string | undefined;
     userDir?: string | undefined;
     builtinDir?: string | undefined;
     logger?: typeof defaultLogger | undefined;

package/clinkx-workflows/dist/rosters.js

@@ -1,13 +1,14 @@
 /**
  * Roster preset discovery. Mirrors adapter-registry discipline in the root
  * package (`src/registry.ts`): env path (file or directory) replaces the
- * default locations; otherwise user XDG then an injected builtin directory.
- * First-wins by name. Synchronous. No cache: list() and load() re-read the
- * filesystem each call. Presets are tiny.
+ * default locations; otherwise user `~/.clinkx/rosters`, then user XDG, then
+ * an injected builtin directory. First-wins by name. Synchronous. No cache:
+ * list() and load() re-read the filesystem each call. Presets are tiny.
  */
 import { lstatSync, readdirSync, readFileSync } from "node:fs";
 import { homedir } from "node:os";
 import { basename, join } from "node:path";
+import { getClinkxHome } from "./config.js";
 import { logger as defaultLogger } from "./logger.js";
 import { ROSTER_NAME_PATTERN, RosterPresetSchema, } from "./roster-contract.js";
 function defaultUserDir(env = process.env) {
@@ -17,8 +18,14 @@ function defaultUserDir(env = process.env) {
 }
 export function resolveRosterLoaderOptionsFromEnv(env = process.env) {
     const envPath = env["CLINKX_ROSTERS_PATH"];
+    if (envPath != null && envPath !== "") {
+        return {
+            envPath,
+            userDir: defaultUserDir(env),
+        };
+    }
     return {
-        ...(envPath != null && envPath !== "" ? { envPath } : {}),
+        clinkxHomeDir: join(getClinkxHome(env), "rosters"),
         userDir: defaultUserDir(env),
     };
 }
@@ -27,7 +34,7 @@ export function createRosterLoader(options = {}) {
     const userDir = options.userDir ?? defaultUserDir();
     const discover = () => {
         const claims = new Map();
-        for (const spec of sourceSpecs(options.envPath, userDir, options.builtinDir)) {
+        for (const spec of sourceSpecs(options.envPath, options.clinkxHomeDir, userDir, options.builtinDir)) {
             ingestPath(spec, claims, log);
         }
         return claims;
@@ -52,11 +59,14 @@ export function createRosterLoader(options = {}) {
         },
     };
 }
-function sourceSpecs(envPath, userDir, builtinDir) {
+function sourceSpecs(envPath, clinkxHomeDir, userDir, builtinDir) {
     if (envPath != null && envPath !== "") {
         return [{ source: "env", path: envPath, allowFile: true }];
     }
     const specs = [];
+    if (clinkxHomeDir != null && clinkxHomeDir !== "") {
+        specs.push({ source: "user", path: clinkxHomeDir, allowFile: false });
+    }
     if (userDir !== "") {
         specs.push({ source: "user", path: userDir, allowFile: false });
     }

package/clinkx-workflows/dist/rosters.js.map

@@ -1 +1 @@
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package/clinkx-workflows/dist/server.js

@@ -8,7 +8,7 @@
 import { readdirSync, readFileSync, statSync } from "node:fs";
 import { join, extname } from "node:path";
 import { Server } from "@modelcontextprotocol/sdk/server/index.js";
-import { getChildConfigPath, getRunsDir, hasExplicitWorkspaceRoot, resolveWorkspaceRoot, } from "./config.js";
+import { getChildConfigPath, getRunsDir, hasExplicitWorkspaceRoot, homeTreeStorageRootWarnings, resolveWorkspaceRoot, } from "./config.js";
 import { logger } from "./logger.js";
 import { reconcileStaleRunDirectories } from "./state.js";
 import { ClinkSession, resolveClinkChildRuntime } from "./transport.js";
@@ -111,6 +111,10 @@ export function createWorkflowServer(options) {
             "This root governs plan_file containment and the workflow child process cwd, so workflow behavior " +
             "depends on the cwd the MCP client spawned this server with. Set CLINKX_WORKFLOWS_WORKSPACE_ROOT explicitly.");
     }
+    const childRuntime = resolveClinkChildRuntime();
+    for (const warning of homeTreeStorageRootWarnings()) {
+        logger.warn({ env_var: warning.envVar, value: warning.value, relation: warning.relation }, warning.message);
+    }
     // One-time startup reconcile of runs frozen as running/pending with no live
     // worker (fire-and-forget: bounded, idempotent, never blocks startup).
     try {
@@ -121,7 +125,6 @@ export function createWorkflowServer(options) {
     catch (err) {
         logger.warn({ err: err instanceof Error ? err.message : String(err) }, "startup stale workflow run reconcile could not be scheduled");
     }
-    const childRuntime = resolveClinkChildRuntime();
     // Normalize empty arrays to undefined — an empty list would suppress schema
     // hints while still enabling validation (rejecting all adapter names).
     const explicit = options?.availableCliNames;

package/clinkx-workflows/dist/server.js.map

@@ -1 +1 @@
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package/clinkx-workflows/dist/state-schema.d.ts

@@ -199,4 +199,17 @@ export interface RunState {
      * runs that did not use a roster.
      */
     readonly rosterName?: string | undefined;
+    /**
+     * Opaque identity of the execution that last bound this state (create or
+     * resume), stamped right after bind and carried by every later publication.
+     * Lets a pinned wait/status resolve a terminal run after a restart or
+     * registry eviction. Omitted on older state and before the first bind.
+     */
+    readonly executionId?: string | undefined;
+    /**
+     * completedAt of the terminal envelope this build published for executionId.
+     * An older build resuming the run carries executionId forward but not a
+     * matching witness, so a pinned read cannot settle on its outcome.
+     */
+    readonly executionCompletedAt?: string | undefined;
 }

package/clinkx-workflows/dist/state.d.ts

@@ -109,6 +109,11 @@ export declare class WorkflowStateStore {
      * deliberately left unchanged here.
      */
     beginResumeAttempt(): Promise<void>;
+    /**
+     * Persist the bound execution identity. Every later write clones this.state,
+     * so the id rides each subsequent publication; a resume overwrites it.
+     */
+    bindExecution(executionId: string): Promise<void>;
     markCancelled(reason?: string): Promise<void>;
     /**
      * Idempotently mark the run failed. Only applies when the current status is
@@ -167,9 +172,10 @@ export declare class WorkflowStateStore {
     private enqueueWrite;
     private writeState;
 }
-export declare function readRunStateForStatus(runId: string): Promise<{
+export declare function readRunStateForStatus(runId: string, containedRead?: boolean): Promise<{
     state: RunState;
     lock: RunLockStatus;
+    stateDigest?: string;
 } | null>;
 /**
  * Reap a run that has no live worker (orphaned/stale/prior-process) by writing a

package/clinkx-workflows/dist/state.js

@@ -5,6 +5,8 @@ import { lstat, mkdir, open, readFile, readdir, realpath, rename, rm, stat, unli
 import { dirname, basename, isAbsolute, join, relative, resolve } from "node:path";
 import { hostname } from "node:os";
 import { fileURLToPath } from "node:url";
+import { ContainedFileChangedError, readContainedRelativeFile } from "./contained-file.js";
+import { ARCHITECTURE_WORKFLOW, MAX_RECORD_BYTES } from "./architecture-comparison/contract.js";
 import { WorkflowError } from "./errors.js";
 import { computeRunHealth } from "./run-health.js";
 import { buildFidelityMetadata, } from "./fidelity.js";
@@ -19,7 +21,7 @@ import { isPlanReviewPublicationEligible, projectPlanReviewRun, } from "./plan-r
 import { isPlanReviewRunState } from "./plan-review/admission.js";
 import { restorePlanReviewRun } from "./plan-review/resume.js";
 import { PlanReviewStageError } from "./plan-review/stage-error.js";
-import { DEFAULT_RETAIN_ASYNC_DAYS, DEFAULT_RETAIN_CANCELLED_DAYS, DEFAULT_RETAIN_DEBUG_DAYS, DEFAULT_RETAIN_FAILED_DAYS, DEFAULT_RETAIN_SUCCEEDED_DAYS, deriveAllowedRoots, getArtifactsDir, getChildConfigPath, getChildMaxConcurrent, getChildMaxOutputBytes, getChildMaxPromptBytes, getChildMaxResponseChars, getLogLevel, getRetentionConfig, getRunsDir, getRunStateDir, getStateDir, invocationAuditV2PersistenceEnabled, observedInvocationPersistenceEnabled, resolveWorkspaceRoot, } from "./config.js";
+import { DEFAULT_DASHBOARD_MAX_STATE_BYTES, DEFAULT_RETAIN_ASYNC_DAYS, DEFAULT_RETAIN_CANCELLED_DAYS, DEFAULT_RETAIN_DEBUG_DAYS, DEFAULT_RETAIN_FAILED_DAYS, DEFAULT_RETAIN_SUCCEEDED_DAYS, deriveAllowedRoots, getArtifactsDir, getChildConfigPath, getChildMaxConcurrent, getChildMaxOutputBytes, getChildMaxPromptBytes, getChildMaxResponseChars, getLogLevel, getRetentionConfig, getRunsDir, getRunStateDir, getStateDir, invocationAuditV2PersistenceEnabled, observedInvocationPersistenceEnabled, resolveWorkspaceRoot, } from "./config.js";
 import { logger } from "./logger.js";
 import { resolveOpenedDescriptorPath } from "./contained-file.js";
 import { deriveWorkflowRunGeneration } from "./dashboard/generation.js";
@@ -149,7 +151,7 @@ const finalizePlanReviewTerminalState = async ({ runDir, previousState, intended
         // yet been committed.
         const intermediate = withPlanReviewPublication(previousState, marker);
         validateStrictStateSubtrees(intermediate, join(runDir, STATE_FILENAME));
-        await writeJsonAtomic(join(runDir, STATE_FILENAME), intermediate);
+        await writeRunStateAtomic(join(runDir, STATE_FILENAME), intermediate);
         return { state: withPlanReviewPublication(intendedState, marker) };
     }
     catch (err) {
@@ -610,7 +612,7 @@ export class WorkflowStateStore {
                 ...(resolvedRoster !== undefined ? { resolvedRoster } : {}),
                 ...(rosterName !== undefined ? { rosterName } : {}),
             };
-            await writeJsonAtomic(join(runDir, STATE_FILENAME), state);
+            await writeRunStateAtomic(join(runDir, STATE_FILENAME), state);
             if (recycled.recycled) {
                 await rm(`${runDir}.recycled`, { recursive: true, force: true }).catch(() => { });
                 if (recycled.retiredSessionLogGeneration !== undefined) {
@@ -731,7 +733,7 @@ export class WorkflowStateStore {
                 stage.completedAt = deriveStageCompletedAt(stage.calls);
             }
             if (mutated) {
-                await writeJsonAtomic(join(runDir, STATE_FILENAME), recovered);
+                await writeRunStateAtomic(join(runDir, STATE_FILENAME), recovered);
             }
             const resume = await buildResumeState(definition, recovered, runDir);
             return new WorkflowStateStore({
@@ -785,6 +787,23 @@ export class WorkflowStateStore {
             nextState.completedAt = undefined;
             nextState.error = undefined;
             nextState.failureClass = undefined;
+            // The reopened record belongs to no execution until bind stamps the new
+            // id; a crash in between must not let reconcile/reap settle the old pin.
+            nextState.executionId = undefined;
+            this.state = nextState;
+            await this.writeState();
+        });
+    }
+    /**
+     * Persist the bound execution identity. Every later write clones this.state,
+     * so the id rides each subsequent publication; a resume overwrites it.
+     */
+    async bindExecution(executionId) {
+        await this.enqueueWrite(async () => {
+            if (this.state.executionId === executionId)
+                return;
+            const nextState = structuredClone(this.state);
+            nextState.executionId = executionId;
             this.state = nextState;
             await this.writeState();
         });
@@ -1159,7 +1178,7 @@ export class WorkflowStateStore {
         await next;
     }
     async writeState() {
-        await writeJsonAtomic(join(this.runDir, STATE_FILENAME), this.state);
+        await writeRunStateAtomic(join(this.runDir, STATE_FILENAME), this.state);
     }
 }
 async function prepareRunDirForCreate(runDir, runId) {
@@ -1507,11 +1526,13 @@ function classifyRunLockSync(lockPath) {
         return code === "ENOENT" ? "stale_or_absent" : "unknown";
     }
 }
-export async function readRunStateForStatus(runId) {
+export async function readRunStateForStatus(runId, containedRead = false) {
     const runDir = getRunStateDir(runId);
-    let state;
+    let read;
     try {
-        state = await readRunState(runDir);
+        read = containedRead
+            ? await readContainedRunState(runDir)
+            : { state: await readRunState(runDir) };
     }
     catch (error) {
         const code = error.code;
@@ -1522,8 +1543,10 @@ export async function readRunStateForStatus(runId) {
     }
     const lockStatus = classifyRunLockSync(join(runDir, RUN_LOCK_FILENAME));
     return {
-        state,
+        state: read.state,
         lock: lockStatus,
+        // Internal execution-fence input only; never projected onto the wire.
+        ...(read.digest !== undefined ? { stateDigest: read.digest } : {}),
     };
 }
 /**
@@ -1597,7 +1620,7 @@ export async function reapRunCancelled(runId) {
             nextState.completedAt = new Date().toISOString();
             nextState.error = "Reaped: no live worker process";
         }
-        await writeJsonAtomic(join(runDir, STATE_FILENAME), nextState);
+        await writeRunStateAtomic(join(runDir, STATE_FILENAME), nextState);
         await safeUnlink(lockPath);
         lockHeld = false;
         return "cancelled";
@@ -1756,7 +1779,7 @@ async function reconcileStaleRun(runDir) {
             nextState.error = STALE_RUN_RECONCILE_ERROR;
             nextState.failureClass = "transient";
         }
-        await writeJsonAtomic(join(runDir, STATE_FILENAME), nextState);
+        await writeRunStateAtomic(join(runDir, STATE_FILENAME), nextState);
         logger.info({ run_dir: runDir, run_id: state.runId }, "reconciled stale running workflow run to terminal failed");
         return "reconciled";
     }
@@ -1935,7 +1958,7 @@ async function buildResumeState(definition, state, runDir) {
             for (const call of stage.calls) {
                 const entry = persistedStage.calls.find((candidate) => candidate.callId === call.id);
                 if (entry?.state === "succeeded") {
-                    completedCalls.set(`${stage.id}.${call.id}`, await rehydrateExecutedCall(runDir, entry));
+                    completedCalls.set(`${stage.id}.${call.id}`, await rehydrateExecutedCall(runDir, entry, definition.name === ARCHITECTURE_WORKFLOW));
                 }
                 else if (entry?.state === "failed" && entry.errorMessage != null) {
                     failedCalls.set(`${stage.id}.${call.id}`, {
@@ -1952,7 +1975,7 @@ async function buildResumeState(definition, state, runDir) {
             for (const call of stage.calls) {
                 const entry = persistedStage.calls.find((candidate) => candidate.callId === call.id);
                 if (entry?.state === "succeeded") {
-                    completedCalls.set(`${stage.id}.${call.id}`, await rehydrateExecutedCall(runDir, entry));
+                    completedCalls.set(`${stage.id}.${call.id}`, await rehydrateExecutedCall(runDir, entry, definition.name === ARCHITECTURE_WORKFLOW));
                     continue;
                 }
                 if (entry?.state === "failed" && entry.errorMessage != null) {
@@ -1967,7 +1990,9 @@ async function buildResumeState(definition, state, runDir) {
                     });
                 }
                 if (entry?.materializedInputPath != null) {
-                    preparedInputs.set(`${stage.id}.${call.id}`, await readJsonFile(join(runDir, entry.materializedInputPath)));
+                    preparedInputs.set(`${stage.id}.${call.id}`, definition.name === ARCHITECTURE_WORKFLOW
+                        ? JSON.parse((await readContainedRelativeFile(runDir, entry.materializedInputPath, { wantContent: true, requireRegular: true, requireExactRequestedPath: true, maxBytes: MAX_RECORD_BYTES })).content)
+                        : await readJsonFile(join(runDir, entry.materializedInputPath)));
                     nextRetryCounts.set(`${stage.id}.${call.id}`, entry.attemptsConsumed ??
                         (entry.state === "running" ? entry.retryCount + 1 : entry.retryCount));
                 }
@@ -1981,10 +2006,12 @@ async function buildResumeState(definition, state, runDir) {
         nextRetryCounts,
     };
 }
-async function rehydrateExecutedCall(runDir, entry) {
-    const outputText = await readPersistedOutput(runDir, entry);
+async function rehydrateExecutedCall(runDir, entry, architecture = false) {
+    const outputText = architecture && entry.outputPath !== undefined
+        ? (await readContainedRelativeFile(runDir, entry.outputPath, { wantContent: true, requireRegular: true, requireExactRequestedPath: true, maxBytes: MAX_RECORD_BYTES })).content
+        : await readPersistedOutput(runDir, entry);
     const artifact = entry.artifactPath != null
-        ? await rehydrateArtifact(runDir, entry.stageId, entry.callId, entry.artifactPath)
+        ? await rehydrateArtifact(runDir, entry.stageId, entry.callId, entry.artifactPath, architecture)
         : undefined;
     const fidelity = entry.fidelity != null ? rehydrateFidelity(entry.fidelity) : undefined;
     return {
@@ -2005,8 +2032,12 @@ async function readPersistedOutput(runDir, entry) {
     }
     throw new Error(`Succeeded call ${entry.stageId}.${entry.callId} is missing persisted output`);
 }
-async function rehydrateArtifact(runDir, stageId, callId, artifactPath) {
+async function rehydrateArtifact(runDir, stageId, callId, artifactPath, architecture = false) {
     const filePath = join(runDir, artifactPath);
+    if (architecture) {
+        const read = await readContainedRelativeFile(runDir, artifactPath, { wantContent: true, requireRegular: true, requireExactRequestedPath: true, maxBytes: MAX_RECORD_BYTES });
+        return { stageId, callId, reference: `${stageId}.${callId}`, filePath, filename: basename(filePath), sizeBytes: read.size, parsed: JSON.parse(read.content) };
+    }
     const serialized = await readFile(filePath, "utf-8");
     const parsed = JSON.parse(serialized);
     const stats = await stat(filePath);
@@ -2200,7 +2231,40 @@ async function listConfigFiles(configPath) {
 }
 async function readRunState(runDir) {
     const statePath = join(runDir, STATE_FILENAME);
-    const state = await readJsonFile(statePath);
+    return validateRunState(await readJsonFile(statePath), statePath);
+}
+/**
+ * One contained read: the digest covers exactly the raw bytes that were parsed,
+ * so a guarded projection is fenced on the state it actually rendered.
+ */
+async function readContainedRunState(runDir) {
+    // Atomic publication can retire an opened inode while a status read is in
+    // flight. Retry only the reader's known change discriminator, with a fixed
+    // immediate bound; policy, permission and malformed-state errors propagate.
+    for (let attempt = 0;; attempt += 1) {
+        let bytes;
+        try {
+            const file = await readContainedRelativeFile(runDir, STATE_FILENAME, {
+                wantBytes: true,
+                requireRegular: true,
+                requireExactRequestedPath: true,
+                maxBytes: DEFAULT_DASHBOARD_MAX_STATE_BYTES,
+            });
+            bytes = file.bytes;
+        }
+        catch (error) {
+            if (!(error instanceof ContainedFileChangedError) || attempt >= 2)
+                throw error;
+            continue;
+        }
+        const state = JSON.parse(bytes.toString("utf-8"));
+        return {
+            state: validateRunState(state, join(runDir, STATE_FILENAME)),
+            digest: createHash("sha256").update(bytes).digest("hex"),
+        };
+    }
+}
+function validateRunState(state, statePath) {
     if (state.state_version !== 1) {
         throw new Error(`Unsupported state_version ${String(state.state_version)} in ${statePath}`);
     }
@@ -2222,6 +2286,13 @@ async function writeJsonSnapshot(filePath, value) {
     await writeTextAtomic(filePath, serialized);
     return hashContent(serialized);
 }
+async function writeRunStateAtomic(filePath, state) {
+    const { executionCompletedAt: _stale, ...rest } = state;
+    const witnessed = rest.executionId !== undefined && isTerminalRunStatus(rest.status) && rest.completedAt !== undefined
+        ? { ...rest, executionCompletedAt: rest.completedAt }
+        : rest;
+    await writeJsonAtomic(filePath, witnessed);
+}
 async function writeJsonAtomic(filePath, value) {
     await writeTextAtomic(filePath, serializeJson(value));
 }