clinkx 0.3.0 → 1.0.0

package/clinkx-workflows/dist/citation-check.js

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+/**
+ * Citation check post-processor.
+ *
+ * Deterministically filters citation "evidence" in code-review schema outputs
+ * down to files that actually exist in the review's allowlist (the union of
+ * diff-touched files, caller-provided context_files, and curated
+ * context_bundle_files). Unverifiable evidence is dropped; findings are never
+ * deleted — when a finding's only support was unverifiable its confidence is
+ * capped so it cannot masquerade as high-confidence.
+ *
+ * Pure and side-effect free: operates on a deep clone of the input.
+ */
+import { basename } from "node:path";
+/** Confidence ceiling applied to findings/refs whose citations don't verify. */
+const UNVERIFIED_CONFIDENCE_CAP = 50;
+// ---------------------------------------------------------------------------
+// Allowlist construction
+// ---------------------------------------------------------------------------
+/**
+ * Add a path and its basename to the allowlist so matching is lenient
+ * (a citation may reference either the repo-relative path or the bare file).
+ */
+export function addPathWithBasename(set, p) {
+    if (typeof p !== "string" || p.length === 0) {
+        return;
+    }
+    set.add(p);
+    set.add(basename(p));
+}
+/** Strip a unified-diff `a/` or `b/` path prefix. */
+function stripDiffPrefix(token) {
+    if (token.startsWith("a/") || token.startsWith("b/")) {
+        return token.slice(2);
+    }
+    return token;
+}
+/**
+ * Parse a unified diff string into an allowlist of touched files (full path
+ * plus basename for each). Recognizes `diff --git a/x b/x`, `+++ b/x`, and
+ * `--- a/x` header lines. `/dev/null` sentinels are excluded.
+ */
+export function buildAllowlistFromDiff(diff) {
+    const set = new Set();
+    if (typeof diff !== "string" || diff.length === 0) {
+        return set;
+    }
+    for (const line of diff.split(/\r?\n/)) {
+        if (line.startsWith("diff --git ")) {
+            const rest = line.slice("diff --git ".length).trim();
+            for (const token of rest.split(/\s+/)) {
+                addPathWithBasename(set, stripDiffPrefix(token));
+            }
+        }
+        else if (line.startsWith("+++ ") || line.startsWith("--- ")) {
+            addPathWithBasename(set, stripDiffPrefix(line.slice(4).trim()));
+        }
+    }
+    set.delete("/dev/null");
+    set.delete("null");
+    return set;
+}
+// ---------------------------------------------------------------------------
+// Matching helpers
+// ---------------------------------------------------------------------------
+function isRecord(value) {
+    return typeof value === "object" && value !== null && !Array.isArray(value);
+}
+/** Extract the file portion of a `path` or `path:line` location string. */
+function fileFromLocation(location) {
+    if (typeof location !== "string" || location.length === 0) {
+        return undefined;
+    }
+    const colon = location.indexOf(":");
+    const file = colon === -1 ? location : location.slice(0, colon);
+    return file.length > 0 ? file : undefined;
+}
+/**
+ * True when `shorter` is a separator-aware path-suffix of `longer` (or equal):
+ * `src/foo.ts` is a suffix of `/abs/src/foo.ts` (the latter ends with `/` +
+ * the former). Handles both `/` and `\` separators. Used to recognize that the
+ * relative and absolute forms of the SAME file are not two distinct files.
+ */
+function isPathSuffix(longer, shorter) {
+    if (longer === shorter) {
+        return true;
+    }
+    if (longer.length <= shorter.length || !longer.endsWith(shorter)) {
+        return false;
+    }
+    const boundary = longer[longer.length - shorter.length - 1];
+    return boundary === "/" || boundary === "\\";
+}
+/**
+ * Count, per basename, how many DISTINCT FILE IDENTITIES in the allowlist share
+ * that basename.
+ *
+ * The allowlist is a flat Set mixing full repo-relative paths AND bare
+ * basenames (see {@link addPathWithBasename}). To decide whether a basename
+ * match is *unambiguous* we only consider path-bearing entries — i.e. entries
+ * that contain a path separator. (A bare-basename entry carries no directory
+ * information, so it cannot disambiguate one directory from another.)
+ *
+ * Crucially, the engine's `resolvePathListLenient` adds BOTH the raw-relative
+ * and the resolved-absolute form of each context file, so one real file yields
+ * two string-distinct entries (`src/foo.ts` and `/abs/.../src/foo.ts`) that
+ * share a basename. Counting those as 2 would wrongly mark a legitimate
+ * bare-basename citation as ambiguous. So within each basename group we collapse
+ * entries where one path is a separator-aware suffix of another (the same file
+ * in two forms) and count only the resulting distinct identities. Two genuinely
+ * different files (`src/a/foo.ts`, `src/b/foo.ts`) are not suffixes of each
+ * other, so they remain count 2 — correctly ambiguous.
+ *
+ * When a basename maps to two-or-more distinct identities it is ambiguous, so a
+ * basename-only citation is rejected; mapping to 0 or 1 is unambiguous and
+ * accepted (see {@link isAllowedFile}).
+ *
+ * Note: this is advisory defense-in-depth against fabricated LLM citations,
+ * not a security boundary.
+ */
+function buildBasenameMultiplicity(allowlist) {
+    // Bucket path-bearing entries by basename first, deduping exact strings.
+    const groups = new Map();
+    const seenPaths = new Set();
+    for (const entry of allowlist) {
+        // Only path-bearing entries (those with a separator) disambiguate.
+        if (!entry.includes("/") && !entry.includes("\\")) {
+            continue;
+        }
+        if (seenPaths.has(entry)) {
+            continue;
+        }
+        seenPaths.add(entry);
+        const base = basename(entry);
+        const group = groups.get(base);
+        if (group === undefined) {
+            groups.set(base, [entry]);
+        }
+        else {
+            group.push(entry);
+        }
+    }
+    // Within each (tiny) group, collapse suffix-duplicates of the same file to a
+    // single identity. O(group^2); groups are small.
+    const counts = new Map();
+    for (const [base, paths] of groups) {
+        let identities = 0;
+        for (let i = 0; i < paths.length; i++) {
+            const candidate = paths[i];
+            let collapsed = false;
+            for (let j = 0; j < paths.length; j++) {
+                if (i === j) {
+                    continue;
+                }
+                const other = paths[j];
+                // `candidate` collapses into `other` when `candidate` is a suffix of the
+                // strictly longer `other` (so each same-file pair is counted exactly
+                // once, via its longest/absolute form).
+                if (other.length > candidate.length && isPathSuffix(other, candidate)) {
+                    collapsed = true;
+                    break;
+                }
+            }
+            if (!collapsed) {
+                identities++;
+            }
+        }
+        counts.set(base, identities);
+    }
+    return counts;
+}
+/**
+ * A file citation is verified when:
+ *  - it carries a directory component and exactly matches a full-path allowlist
+ *    entry; OR
+ *  - it is a bare basename present in the allowlist whose basename is
+ *    unambiguous (fewer than two distinct full paths share it).
+ *
+ * The basename fallback is deliberately conservative: common filenames
+ * (index.ts, schema.ts, handler.ts) collide across directories, so a
+ * directory-qualified citation that does not match a full path is NOT downgraded
+ * to a basename match — this stops a fabricated `src/unrelated/schema.ts` from
+ * riding on an unrelated `schema.ts` already in the allowlist. Advisory
+ * defense-in-depth, not a security boundary.
+ */
+function isAllowedFile(file, allowlist, basenameMultiplicity) {
+    const base = basename(file);
+    // Citation carries a directory component: require an exact full-path match.
+    // Do NOT fall back to a basename match — a citation that was specific about a
+    // directory that isn't allowed (e.g. a fabricated `src/unrelated/schema.ts`)
+    // must not ride on an allowed `src/other/schema.ts`. Note we cannot rely on
+    // `allowlist.has(file)` alone for the bare case because the allowlist also
+    // stores bare basenames (see addPathWithBasename), so a bare-basename
+    // citation would always "match" without the multiplicity gate below.
+    if (file !== base) {
+        return allowlist.has(file);
+    }
+    // Bare-basename citation: accept only when that basename is present AND
+    // unambiguous. Ambiguity means TWO OR MORE distinct full paths share the
+    // basename — only then could the bare citation point at the wrong file.
+    // Multiplicity 0 (the entry exists only as a bare basename / a root-level
+    // file with no directory variants) or 1 is unambiguous and accepted; >=2 is
+    // rejected.
+    if (!allowlist.has(base)) {
+        return false;
+    }
+    return (basenameMultiplicity.get(base) ?? 0) < 2;
+}
+/**
+ * Cap a finding/ref's confidence to {@link UNVERIFIED_CONFIDENCE_CAP} because
+ * its citation did not verify. Confidence is OPTIONAL in the schema, so:
+ *  - if it is already a number, lower it to the cap (never raised);
+ *  - if it is absent / non-numeric, SET it to the cap so every unverifiable
+ *    finding carries an explicit low-confidence signal.
+ * Mutates the (deep-cloned) record in place; never deletes the finding/ref.
+ */
+function capUnverifiedConfidence(record) {
+    const existing = record["confidence"];
+    const numeric = typeof existing === "number" ? existing : undefined;
+    record["confidence"] = Math.min(numeric ?? UNVERIFIED_CONFIDENCE_CAP, UNVERIFIED_CONFIDENCE_CAP);
+}
+/** An evidence entry is verifiable iff its `.location` file is in the allowlist. */
+function isAllowedEvidence(entry, allowlist, basenameMultiplicity) {
+    const file = fileFromLocation(isRecord(entry) ? entry["location"] : undefined);
+    if (file === undefined) {
+        return false;
+    }
+    return isAllowedFile(file, allowlist, basenameMultiplicity);
+}
+// ---------------------------------------------------------------------------
+// Schema walks
+// ---------------------------------------------------------------------------
+/**
+ * Reviewer schema: validate `<key>[].file` and filter `<key>[].evidence[]`
+ * against the allowlist. Confidence is capped/set to {@link UNVERIFIED_CONFIDENCE_CAP}
+ * when EITHER the finding's top-level `file` is set but not allowed (a fabricated
+ * primary file — mirrors {@link processRefs} semantics), OR the finding had
+ * evidence that was entirely filtered out. Because confidence is OPTIONAL, an
+ * unverified finding that OMITS confidence gets it SET to the cap so it can't
+ * masquerade as unscored/high-confidence (see {@link capUnverifiedConfidence}).
+ * Never remove the finding itself.
+ */
+function processReviewerFindings(root, key, allowlist, basenameMultiplicity) {
+    const findings = root[key];
+    if (!Array.isArray(findings)) {
+        return;
+    }
+    for (const finding of findings) {
+        if (!isRecord(finding)) {
+            continue;
+        }
+        // Top-level `file` validation (mirrors processRefs). A fabricated primary
+        // file caps confidence even when the finding carries no evidence, or carries
+        // valid evidence pointing at a *different* allowed file.
+        const file = finding["file"];
+        const fileUnverified = typeof file === "string" &&
+            file.length > 0 &&
+            !isAllowedFile(file, allowlist, basenameMultiplicity);
+        let evidenceUnverified = false;
+        const evidence = finding["evidence"];
+        if (Array.isArray(evidence)) {
+            const hadEvidence = evidence.length > 0;
+            const kept = evidence.filter((entry) => isAllowedEvidence(entry, allowlist, basenameMultiplicity));
+            finding["evidence"] = kept;
+            evidenceUnverified = hadEvidence && kept.length === 0;
+        }
+        if (fileUnverified || evidenceUnverified) {
+            capUnverifiedConfidence(finding);
+        }
+    }
+}
+/**
+ * Cross-reviewer refs: drop invalid evidence; cap/set confidence to the cap when
+ * EITHER the ref's `.file` is set but not in the allowlist (a fabricated primary
+ * file), OR the ref HAD evidence that was entirely filtered out (mirrors
+ * {@link processReviewerFindings} semantics — `file`, `evidence`, and
+ * `confidence` are all OPTIONAL in the cross-review ref schema, so a ref with no
+ * `file`, fabricated evidence, and no `confidence` must still be downgraded). An
+ * omitted confidence value is SET to the cap so it cannot masquerade as
+ * unscored/high-confidence. Refs are never dropped.
+ */
+function processRefs(refs, allowlist, basenameMultiplicity) {
+    if (!Array.isArray(refs)) {
+        return;
+    }
+    for (const ref of refs) {
+        if (!isRecord(ref)) {
+            continue;
+        }
+        let evidenceUnverified = false;
+        const evidence = ref["evidence"];
+        if (Array.isArray(evidence)) {
+            const hadEvidence = evidence.length > 0;
+            const kept = evidence.filter((entry) => isAllowedEvidence(entry, allowlist, basenameMultiplicity));
+            ref["evidence"] = kept;
+            evidenceUnverified = hadEvidence && kept.length === 0;
+        }
+        const file = ref["file"];
+        const fileUnverified = typeof file === "string" &&
+            file.length > 0 &&
+            !isAllowedFile(file, allowlist, basenameMultiplicity);
+        if (fileUnverified || evidenceUnverified) {
+            capUnverifiedConfidence(ref);
+        }
+    }
+}
+function processCrossReviewer(root, allowlist, basenameMultiplicity) {
+    const feedback = root["per_review_feedback"];
+    if (!Array.isArray(feedback)) {
+        return;
+    }
+    for (const fb of feedback) {
+        if (!isRecord(fb)) {
+            continue;
+        }
+        processRefs(fb["missed_issue_refs"], allowlist, basenameMultiplicity);
+        processRefs(fb["false_positive_refs"], allowlist, basenameMultiplicity);
+    }
+}
+// ---------------------------------------------------------------------------
+// Entry point
+// ---------------------------------------------------------------------------
+/**
+ * Filter unverifiable citations from a code-review schema artifact.
+ *
+ * Only acts when `ctx.schemaId` identifies a code-review schema (id includes
+ * `"code_review"`); otherwise the input is returned unchanged. Both the
+ * reviewer and cross-reviewer shapes are handled defensively — missing/optional
+ * fields are tolerated, and the input is deep-cloned before mutation.
+ */
+export function citationCheck(validated, ctx) {
+    if (!ctx.schemaId.includes("code_review")) {
+        return validated;
+    }
+    const clone = structuredClone(validated);
+    if (!isRecord(clone)) {
+        return clone;
+    }
+    // Precompute basename → full-path multiplicity once per call so the matching
+    // helpers can reject ambiguous basename-only citations (Fix #4).
+    const basenameMultiplicity = buildBasenameMultiplicity(ctx.allowlist);
+    // Reviewer schema locations.
+    processReviewerFindings(clone, "blocking_issues", ctx.allowlist, basenameMultiplicity);
+    processReviewerFindings(clone, "structural_findings", ctx.allowlist, basenameMultiplicity);
+    // Cross-reviewer schema locations.
+    processCrossReviewer(clone, ctx.allowlist, basenameMultiplicity);
+    return clone;
+}
+//# sourceMappingURL=citation-check.js.map

package/clinkx-workflows/dist/citation-check.js.map

@@ -0,0 +1 @@
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package/clinkx-workflows/dist/clink-client.d.ts

@@ -13,6 +13,7 @@
  * - Only output_text is stored/threaded/hashed
  */
 import type { ClinkBackend, ToolCallResult } from "./backend.js";
+import type { SessionLogOwnerV1 } from "./dashboard/session-log-contract.js";
 /** Parsed result from a clink call. */
 export interface ClinkCallResult {
     /** Primary output text (for storage/threading/hashing). */
@@ -48,4 +49,4 @@ export declare function parseCallResult(result: ToolCallResult): ClinkCallResult
 export declare function callClink(session: ClinkBackend, input: Record<string, unknown>, signal?: AbortSignal, context?: {
     stageId: string;
     callId: string;
-}, timeoutMs?: number): Promise<ClinkCallResult>;
+}, timeoutMs?: number, sessionLogOwner?: SessionLogOwnerV1): Promise<ClinkCallResult>;

package/clinkx-workflows/dist/clink-client.js

@@ -24,12 +24,16 @@ import { basename } from "node:path";
 export function buildCallArgs(input) {
     // Clone to avoid mutating caller's input
     const args = { ...input };
+    delete args["sessionLogOwner"];
+    delete args["session_log_owner"];
     // Always enable debug for internal calls
     args["debug"] = true;
     // Strip host _meta.progressToken (1-11a: progress isolation)
     if (args["_meta"] != null && typeof args["_meta"] === "object") {
         const meta = { ...args["_meta"] };
         delete meta["progressToken"];
+        delete meta["sessionLogOwner"];
+        delete meta["session_log_owner"];
         // Only keep _meta if it still has keys
         if (Object.keys(meta).length > 0) {
             args["_meta"] = meta;
@@ -96,16 +100,17 @@ function sanitizeDebugMetadataForLog(debug) {
  * @throws InvalidCallError on child -32602
  * @throws CallExecutionError on child isError: true
  */
-export async function callClink(session, input, signal, context, timeoutMs) {
+export async function callClink(session, input, signal, context, timeoutMs, sessionLogOwner) {
     const args = buildCallArgs(input);
     const stageId = context?.stageId ?? "unknown";
     const callId = context?.callId ?? "unknown";
     let result;
     try {
-        result = await session.callTool(args, signal != null || timeoutMs != null
+        result = await session.callTool(args, signal != null || timeoutMs != null || sessionLogOwner != null
             ? {
                 ...(signal != null ? { signal } : {}),
                 ...(timeoutMs != null ? { timeoutMs } : {}),
+                ...(sessionLogOwner != null ? { sessionLogOwner } : {}),
             }
             : undefined);
     }
@@ -123,9 +128,14 @@ export async function callClink(session, input, signal, context, timeoutMs) {
         const childDebugMetadata = extractChildFailureMetadata(parsed.debugMetadata);
         // Fallback: if pipeline missed the panic class (e.g. wrapper formatting
         // differences), detect the codex-local crash signature in output text.
+        // Structured metadata takes precedence: when the child's _debug already
+        // carries a codex_panic_class, trust that classification and skip
+        // prose re-synthesis (kept only for old children without structured _debug).
         let effectiveFailureClass = failureClass;
         let effectiveChildDebugMetadata = childDebugMetadata;
-        if (failureClass === "permanent" && parsed.outputText != null) {
+        if (failureClass === "permanent" &&
+            parsed.outputText != null &&
+            childDebugMetadata?.codex_panic_class == null) {
             const codexLocalMatch = parsed.outputText.match(/\[codex-local\]:?\s*Local Codex process failed(?::\s*Process exited with code:\s*(\d+))?/);
             if (codexLocalMatch != null) {
                 const exitCode = codexLocalMatch[1] != null ? Number(codexLocalMatch[1]) : null;
@@ -222,11 +232,14 @@ function extractChildFailureMetadata(debug) {
         adapter_config_path: typeof debug["adapter_config_path"] === "string" ? debug["adapter_config_path"] : undefined,
         exit_code: typeof debug["exit_code"] === "number" || debug["exit_code"] === null ? debug["exit_code"] : undefined,
         codex_panic_class: typeof debug["codex_panic_class"] === "string" ? debug["codex_panic_class"] : undefined,
+        semantic_failure_reason: typeof debug["semantic_failure_reason"] === "string" ? debug["semantic_failure_reason"] : undefined,
+        secondary_failure_reason: typeof debug["secondary_failure_reason"] === "string" ? debug["secondary_failure_reason"] : undefined,
     };
     // Only return if at least one field is present
     const hasContent = meta.rejection_reason != null || meta.parse_status != null ||
         meta.parse_source != null || meta.adapter_config_path != null || meta.exit_code !== undefined ||
-        meta.codex_panic_class != null;
+        meta.codex_panic_class != null || meta.semantic_failure_reason != null ||
+        meta.secondary_failure_reason != null;
     return hasContent ? meta : undefined;
 }
 /**

package/clinkx-workflows/dist/clink-client.js.map

@@ -1 +1 @@
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