clinkx 0.2.2 → 0.3.0

package/dist/context-builder/storage.js.map

@@ -0,0 +1 @@
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package/dist/context-builder/token-estimate.d.ts

@@ -0,0 +1,8 @@
+export declare const CONTEXT_BUILDER_TOKEN_COUNTING_METHOD: "utf8_bytes_div_3_ceiling";
+export type ContextBuilderTokenCounting = {
+    method: typeof CONTEXT_BUILDER_TOKEN_COUNTING_METHOD;
+};
+export declare function utf8ByteLength(input: string): number;
+export declare function estimateContextBuilderTokensFromUtf8Bytes(utf8Bytes: number): number;
+export declare function estimateContextBuilderTokens(input: string): number;
+export declare function contextBuilderTokenCountingMethod(): ContextBuilderTokenCounting;

package/dist/context-builder/token-estimate.js

@@ -0,0 +1,17 @@
+export const CONTEXT_BUILDER_TOKEN_COUNTING_METHOD = "utf8_bytes_div_3_ceiling";
+export function utf8ByteLength(input) {
+    return Buffer.byteLength(input, "utf8");
+}
+export function estimateContextBuilderTokensFromUtf8Bytes(utf8Bytes) {
+    if (!Number.isSafeInteger(utf8Bytes) || utf8Bytes < 0) {
+        throw new RangeError("utf8Bytes must be a non-negative safe integer");
+    }
+    return Math.ceil(utf8Bytes / 3);
+}
+export function estimateContextBuilderTokens(input) {
+    return estimateContextBuilderTokensFromUtf8Bytes(utf8ByteLength(input));
+}
+export function contextBuilderTokenCountingMethod() {
+    return { method: CONTEXT_BUILDER_TOKEN_COUNTING_METHOD };
+}
+//# sourceMappingURL=token-estimate.js.map

package/dist/context-builder/token-estimate.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"token-estimate.js","sourceRoot":"","sources":["../../src/context-builder/token-estimate.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,qCAAqC,GAChD,0BAAmC,CAAC;AAMtC,MAAM,UAAU,cAAc,CAAC,KAAa;IAC1C,OAAO,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;AAC1C,CAAC;AAED,MAAM,UAAU,yCAAyC,CACvD,SAAiB;IAEjB,IAAI,CAAC,MAAM,CAAC,aAAa,CAAC,SAAS,CAAC,IAAI,SAAS,GAAG,CAAC,EAAE,CAAC;QACtD,MAAM,IAAI,UAAU,CAAC,+CAA+C,CAAC,CAAC;IACxE,CAAC;IAED,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,GAAG,CAAC,CAAC,CAAC;AAClC,CAAC;AAED,MAAM,UAAU,4BAA4B,CAAC,KAAa;IACxD,OAAO,yCAAyC,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC;AAC1E,CAAC;AAED,MAAM,UAAU,iCAAiC;IAC/C,OAAO,EAAE,MAAM,EAAE,qCAAqC,EAAE,CAAC;AAC3D,CAAC"}

package/dist/index.d.ts

@@ -1,2 +1,13 @@
 #!/usr/bin/env node
+import { Writable } from "node:stream";
+import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+interface ShutdownServer {
+    close(): Promise<void> | void;
+}
+interface ShutdownOnceOptions {
+    killAllActiveFn?: () => Promise<void>;
+    exitFn?: (exitCode: number) => void;
+}
+export declare function createShutdownOnce(server: ShutdownServer, options?: ShutdownOnceOptions): (reason: string, exitCode: number) => Promise<void>;
+export declare function patchTransportSend(transport: StdioServerTransport, stdout?: Writable, onBrokenStdout?: () => void): void;
 export {};

package/dist/index.js

@@ -1,9 +1,228 @@
 #!/usr/bin/env node
+import { realpathSync } from "node:fs";
+import { fileURLToPath, pathToFileURL } from "node:url";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import { serializeMessage } from "@modelcontextprotocol/sdk/shared/stdio.js";
 import { createServer } from "./server.js";
 import { logger, assertStderrLogger } from "./logger.js";
 import { assertNotRootDir } from "./paths.js";
-import { killAllActive } from "./runner.js";
+import { activeProcesses, killAllActive } from "./runner.js";
+const SHUTDOWN_DEADLINE_MS = 10_000;
+const SEND_TIMEOUT_MS = 30_000;
+const patchedTransports = new WeakSet();
+export function createShutdownOnce(server, options = {}) {
+    let shuttingDown = false;
+    const killAllActiveFn = options.killAllActiveFn ?? killAllActive;
+    const exitFn = options.exitFn ?? ((exitCode) => {
+        process.exit(exitCode);
+    });
+    return async function shutdownOnce(reason, exitCode) {
+        if (shuttingDown)
+            return;
+        shuttingDown = true;
+        const deadline = new Promise((_, reject) => {
+            setTimeout(() => reject(new Error("shutdown deadline exceeded")), SHUTDOWN_DEADLINE_MS).unref();
+        });
+        try {
+            await Promise.race([
+                (async () => {
+                    let effectiveExitCode = exitCode;
+                    logger.info({ reason, activeProcesses: activeProcesses.size, writableLength: process.stdout.writableLength }, "clinkx:shutdown");
+                    logger.info({ reason, exit_code: exitCode }, "shutdown requested, cleaning up");
+                    try {
+                        await killAllActiveFn();
+                    }
+                    catch (err) {
+                        effectiveExitCode = 1;
+                        logger.error({ reason, err: err instanceof Error ? err.message : String(err) }, "killAllActive failed during shutdown");
+                    }
+                    try {
+                        await server.close();
+                    }
+                    catch (err) {
+                        effectiveExitCode = 1;
+                        logger.error({ reason, err: err instanceof Error ? err.message : String(err) }, "server close failed during shutdown");
+                    }
+                    if (process.stdout.writableLength > 0 && process.stdout.writable) {
+                        await new Promise((resolve) => {
+                            const onDrain = () => {
+                                clearTimeout(timer);
+                                resolve();
+                            };
+                            const timer = setTimeout(() => {
+                                process.stdout.off("drain", onDrain);
+                                resolve();
+                            }, 2_000);
+                            timer.unref();
+                            process.stdout.once("drain", onDrain);
+                        });
+                    }
+                    exitFn(effectiveExitCode);
+                })(),
+                deadline,
+            ]);
+        }
+        catch {
+            try {
+                logger.error({ reason }, "shutdown deadline exceeded, forcing exit");
+            }
+            catch {
+                // stderr may be broken
+            }
+            process.exit(1);
+        }
+    };
+}
+function runShutdown(shutdownOnce, reason, exitCode) {
+    void shutdownOnce(reason, exitCode).catch((err) => {
+        try {
+            logger.fatal({ err, reason }, "shutdown failed");
+        }
+        catch {
+            // stderr may already be broken
+        }
+        process.exit(1);
+    });
+}
+function logFatal(reason, err) {
+    try {
+        logger.fatal({ err, reason }, "fatal process event");
+    }
+    catch {
+        // stderr may already be broken
+    }
+}
+function toError(err) {
+    return err instanceof Error ? err : new Error(String(err));
+}
+function extractRpcMeta(msg) {
+    if ("method" in msg) {
+        return "id" in msg && msg.id !== undefined ? { id: msg.id, method: msg.method } : { method: msg.method };
+    }
+    if ("id" in msg && msg.id !== undefined)
+        return { id: msg.id };
+    return {};
+}
+export function patchTransportSend(transport, stdout = process.stdout, onBrokenStdout) {
+    if (patchedTransports.has(transport))
+        return;
+    patchedTransports.add(transport);
+    let brokenError;
+    let sendChain = Promise.resolve();
+    const pendingRejects = [];
+    let shuttingDown = false;
+    function markBroken(err) {
+        brokenError ??= err;
+        const rejects = pendingRejects.splice(0);
+        for (const reject of rejects) {
+            reject(brokenError);
+        }
+        if (!shuttingDown) {
+            shuttingDown = true;
+            stdout.off("error", onError);
+            onBrokenStdout?.();
+        }
+    }
+    function onError(err) {
+        markBroken(err);
+    }
+    stdout.on("error", onError);
+    function sendOne(message) {
+        if (brokenError !== undefined) {
+            return Promise.reject(brokenError);
+        }
+        const json = serializeMessage(message);
+        const payloadBytes = Buffer.byteLength(json, "utf8");
+        const { id: rpcId, method: rpcMethod } = extractRpcMeta(message);
+        return new Promise((resolve, reject) => {
+            if (brokenError !== undefined) {
+                reject(brokenError);
+                return;
+            }
+            let settled = false;
+            let drainAttached = false;
+            let drainStartedAt = 0;
+            const timeout = setTimeout(() => {
+                logger.error({ rpcId, rpcMethod, payloadBytes }, "transport:send:timeout");
+                markBroken(new Error(`stdout write timed out after ${SEND_TIMEOUT_MS}ms`));
+            }, SEND_TIMEOUT_MS);
+            timeout.unref();
+            function cleanup() {
+                clearTimeout(timeout);
+                const index = pendingRejects.indexOf(onStdoutError);
+                if (index !== -1) {
+                    pendingRejects.splice(index, 1);
+                }
+                if (drainAttached) {
+                    stdout.off("drain", onDrain);
+                }
+            }
+            function settleResolve() {
+                if (settled)
+                    return;
+                settled = true;
+                const drainMs = drainStartedAt === 0 ? 0 : Date.now() - drainStartedAt;
+                cleanup();
+                logger.debug({ rpcId, rpcMethod, payloadBytes, drainMs }, "transport:send:ok");
+                resolve();
+            }
+            function settleReject(err) {
+                if (settled)
+                    return;
+                settled = true;
+                cleanup();
+                reject(err);
+            }
+            function onStdoutError(err) {
+                settleReject(err);
+            }
+            function onDrain() {
+                settleResolve();
+            }
+            pendingRejects.push(onStdoutError);
+            try {
+                logger.debug({ rpcId, rpcMethod, payloadBytes, writableLength: stdout.writableLength }, "transport:send:start");
+                if (stdout.write(json)) {
+                    settleResolve();
+                }
+                else {
+                    drainAttached = true;
+                    drainStartedAt = Date.now();
+                    stdout.once("drain", onDrain);
+                }
+            }
+            catch (err) {
+                const error = toError(err);
+                const nodeError = error;
+                logger.error({
+                    rpcId,
+                    rpcMethod,
+                    payloadBytes,
+                    errCode: nodeError.code,
+                    errSyscall: nodeError.syscall,
+                }, "transport:send:error");
+                markBroken(error);
+                settleReject(error);
+            }
+        });
+    }
+    transport.send = (message) => {
+        const send = sendChain.then(() => sendOne(message), () => sendOne(message));
+        sendChain = send.catch(() => undefined);
+        return send;
+    };
+}
+function isEntrypoint() {
+    const entry = process.argv[1];
+    if (entry == null)
+        return false;
+    try {
+        return realpathSync(entry) === realpathSync(fileURLToPath(import.meta.url));
+    }
+    catch {
+        return import.meta.url === pathToFileURL(entry).href;
+    }
+}
 /**
  * ClinkX MCP server entry point.
  *
@@ -19,20 +238,33 @@ async function main() {
     const server = createServer();
     const transport = new StdioServerTransport();
     logger.info("ClinkX MCP server starting (STDIO transport)");
+    logger.info({ pid: process.pid, ppid: process.ppid }, "clinkx:startup");
+    const shutdownOnce = createShutdownOnce(server);
+    patchTransportSend(transport, process.stdout, () => {
+        runShutdown(shutdownOnce, "stdout:error", 1);
+    });
+    process.once("SIGTERM", () => runShutdown(shutdownOnce, "SIGTERM", 0));
+    process.once("SIGINT", () => runShutdown(shutdownOnce, "SIGINT", 0));
+    process.once("SIGHUP", () => runShutdown(shutdownOnce, "SIGHUP", 0));
+    process.stdin.once("end", () => runShutdown(shutdownOnce, "stdin:end", 0));
+    process.stdin.once("close", () => runShutdown(shutdownOnce, "stdin:close", 0));
+    process.stdin.once("error", () => runShutdown(shutdownOnce, "stdin:error", 1));
+    process.stderr.on("error", () => runShutdown(shutdownOnce, "stderr:error", 0));
+    process.on("uncaughtException", (err) => {
+        logFatal("uncaughtException", err);
+        runShutdown(shutdownOnce, "uncaughtException", 1);
+    });
+    process.on("unhandledRejection", (reason) => {
+        logFatal("unhandledRejection", reason);
+        runShutdown(shutdownOnce, "unhandledRejection", 1);
+    });
     await server.connect(transport);
-    // Graceful shutdown: kill active subprocesses, close server, exit
-    const shutdown = async () => {
-        logger.info("shutdown signal received, cleaning up");
-        killAllActive();
-        await server.close();
-        process.exit(0);
-    };
-    process.once("SIGTERM", () => void shutdown().catch(() => process.exit(1)));
-    process.once("SIGINT", () => void shutdown().catch(() => process.exit(1)));
     logger.info("ClinkX MCP server connected and ready");
 }
-main().catch((err) => {
-    logger.fatal({ err }, "ClinkX failed to start");
-    process.exitCode = 1;
-});
+if (isEntrypoint()) {
+    main().catch((err) => {
+        logger.fatal({ err }, "ClinkX failed to start");
+        process.exitCode = 1;
+    });
+}
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/paths.d.ts

@@ -1,3 +1,8 @@
+/**
+ * Parse CLINKX_ALLOWED_ROOTS env into an array of resolved absolute paths.
+ * Falls back to process.cwd() when not set.
+ */
+export declare function getCurrentAllowedRoots(): string[];
 /**
  * Startup guard: refuse to run if cwd resolves to filesystem root
  * unless CLINKX_ALLOWED_ROOTS is explicitly set.
@@ -15,3 +20,6 @@ export declare function assertNotRootDir(): void;
  * Throws InvalidParamsError if validation fails.
  */
 export declare function validatePath(inputPath: string): string;
+export declare function validateExistingPath(inputPath: string): string;
+export declare function validateExistingDirectory(inputPath: string): string;
+export declare function validateProspectiveChildPath(realpathedParent: string, childPath: string): string;

package/dist/paths.js

@@ -1,42 +1,14 @@
 import * as fs from "node:fs";
 import * as path from "node:path";
+import { isFilesystemRoot, isPathWithinAllowedRoots, isSamePathOrDescendant, parseAllowedRootsEnv, } from "./allowed-roots.js";
 import { InvalidParamsError } from "./errors.js";
 import { logger } from "./logger.js";
 /**
  * Parse CLINKX_ALLOWED_ROOTS env into an array of resolved absolute paths.
  * Falls back to process.cwd() when not set.
  */
-function getAllowedRoots() {
-    const envVal = process.env["CLINKX_ALLOWED_ROOTS"];
-    const raw = envVal != null && envVal.length > 0
-        ? envVal
-            .split(",")
-            .map((r) => r.trim())
-            .filter((r) => r.length > 0)
-        : [process.cwd()];
-    // Resolve through realpath so symlinks (e.g. macOS /var → /private/var)
-    // are consistent with how we resolve validated paths.
-    return raw.map((r) => {
-        try {
-            return fs.realpathSync(path.resolve(r));
-        }
-        catch {
-            return path.resolve(r);
-        }
-    });
-}
-/**
- * Check whether a resolved path is a filesystem root.
- * Handles Unix (/) and Windows drive roots (C:\).
- */
-function isFilesystemRoot(resolved) {
-    // Unix root
-    if (resolved === "/")
-        return true;
-    // Windows drive root: single letter + colon + backslash (or just colon + backslash)
-    if (/^[a-zA-Z]:[/\\]?$/.test(resolved))
-        return true;
-    return false;
+export function getCurrentAllowedRoots() {
+    return parseAllowedRootsEnv();
 }
 /**
  * Startup guard: refuse to run if cwd resolves to filesystem root
@@ -66,22 +38,38 @@ export function assertNotRootDir() {
  * Throws InvalidParamsError if validation fails.
  */
 export function validatePath(inputPath) {
-    const roots = getAllowedRoots();
-    let resolved;
+    return validateExistingPath(inputPath);
+}
+export function validateExistingPath(inputPath) {
+    const roots = getCurrentAllowedRoots();
+    const resolved = realpathExistingPath(inputPath);
+    if (!isPathWithinAllowedRoots(resolved, roots)) {
+        throw new InvalidParamsError(`Path "${inputPath}" (resolved: ${resolved}) is outside allowed roots. ` +
+            `Allowed: ${roots.join(", ")}`);
+    }
+    return resolved;
+}
+export function validateExistingDirectory(inputPath) {
+    const resolved = validateExistingPath(inputPath);
+    const stats = fs.statSync(resolved);
+    if (!stats.isDirectory()) {
+        throw new InvalidParamsError(`Path is not a directory: ${inputPath}`);
+    }
+    return resolved;
+}
+export function validateProspectiveChildPath(realpathedParent, childPath) {
+    const resolvedChild = path.resolve(realpathedParent, childPath);
+    if (!isSamePathOrDescendant(resolvedChild, realpathedParent)) {
+        throw new InvalidParamsError(`Path "${childPath}" escapes parent directory: ${realpathedParent}`);
+    }
+    return resolvedChild;
+}
+function realpathExistingPath(inputPath) {
     try {
-        resolved = fs.realpathSync(inputPath);
+        return fs.realpathSync(inputPath);
     }
     catch {
         throw new InvalidParamsError(`Path does not exist or is not accessible: ${inputPath}`);
     }
-    const withinRoot = roots.some((root) => {
-        const normalizedRoot = root.endsWith(path.sep) ? root : root + path.sep;
-        return resolved === root || resolved.startsWith(normalizedRoot);
-    });
-    if (!withinRoot) {
-        throw new InvalidParamsError(`Path "${inputPath}" (resolved: ${resolved}) is outside allowed roots. ` +
-            `Allowed: ${roots.join(", ")}`);
-    }
-    return resolved;
 }
 //# sourceMappingURL=paths.js.map

package/dist/paths.js.map

@@ -1 +1 @@
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package/dist/pipeline.d.ts

@@ -1,5 +1,6 @@
 import type { ClinkInput } from "./schema.js";
 import type { AdapterRegistry } from "./registry.js";
+import { type RunResult } from "./runner.js";
 import type { Server } from "@modelcontextprotocol/sdk/server/index.js";
 export declare function pickPreferTail(head: string, tail: string): string;
 export declare function formatStdStreamsForError(options: {
@@ -8,19 +9,60 @@ export declare function formatStdStreamsForError(options: {
     stdoutLabel?: string;
     maxChars: number;
 }): string;
-export declare function classifyStdoutCrash(stdout: string): string | null;
+export declare function classifyStdoutCrash(stdout: string, stderr?: string): string | null;
 export declare function panicSpecificity(panicClass: string): number;
 /**
- * Resolve the effective timeout: adapter timeout acts as a floor.
- * Callers may extend above it, but never shorten below it.
+ * Resolve the effective timeout.
+ *
+ * Normal clink calls treat the adapter timeout as a floor. Internal delegate
+ * calls may opt into an honest request ceiling so their watchdog and subprocess
+ * wall timeout share one deadline.
  */
-export declare function resolveEffectiveTimeout(requested: number | undefined, adapterTimeout: number): number;
+export declare function resolveEffectiveTimeout(requested: number | undefined, adapterTimeout: number, options?: {
+    allowBelowAdapter?: boolean;
+}): number;
 export interface PipelineResult {
     content: Array<{
         type: "text";
         text: string;
     }>;
     isError?: boolean;
+    jsonFidelity?: PipelineJsonFidelityMetadata;
+}
+export type PipelineJsonTopLevelType = "object" | "array" | "string" | "number" | "boolean" | "null";
+export interface PipelineJsonFidelityMetadata {
+    readonly mode: "strict";
+    readonly enforced: boolean;
+    readonly parseSource: string;
+    readonly parseStatus: string | null;
+    readonly rejectionReason: string | null;
+    readonly valid: boolean;
+    readonly topLevelType: PipelineJsonTopLevelType | null;
+    readonly salvaged: boolean;
+    readonly salvageMethod: string | null;
+    readonly blockCount: number | null;
+    readonly rawFallback: boolean;
+    readonly capture: {
+        readonly truncated: boolean;
+        readonly streams: string[];
+        readonly stdoutTruncated: boolean;
+        readonly stderrTruncated: boolean;
+    };
+    readonly response: {
+        readonly truncated: boolean;
+        readonly maxChars: number;
+    };
+    readonly termination: {
+        readonly reason: RunResult["terminationReason"];
+        readonly timedOut: boolean;
+        readonly idleTimedOut: boolean;
+        readonly killed: boolean;
+        readonly signal: string | null;
+    };
+    readonly strict: {
+        readonly acceptable: boolean;
+        readonly violations: string[];
+    };
 }
 export declare function executePipeline(input: ClinkInput, registry: AdapterRegistry, options?: {
     signal?: AbortSignal;
@@ -28,6 +70,8 @@ export declare function executePipeline(input: ClinkInput, registry: AdapterRegi
         server: Server;
         token: string | number;
     };
+    jsonFidelity?: "strict";
+    allowTimeoutBelowAdapter?: boolean;
 }): Promise<PipelineResult>;
 /**
  * Limit output to maxChars with JSON-aware truncation.