npm - clinicaltrialsgov-mcp-server - Versions diffs - 2.8.5 → 2.8.7 - Mend

clinicaltrialsgov-mcp-server 2.8.5 → 2.8.7

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Files changed (42) hide show

package/README.md CHANGED Viewed

@@ -7,7 +7,7 @@
 <div align="center">
-[![npm](https://img.shields.io/npm/v/clinicaltrialsgov-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/clinicaltrialsgov-mcp-server) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/clinicaltrialsgov-mcp-server) [![Version](https://img.shields.io/badge/Version-2.8.5-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.14-blueviolet.svg?style=flat-square)](https://bun.sh/)
+[![npm](https://img.shields.io/npm/v/clinicaltrialsgov-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/clinicaltrialsgov-mcp-server) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/clinicaltrialsgov-mcp-server) [![Version](https://img.shields.io/badge/Version-2.8.7-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.14-blueviolet.svg?style=flat-square)](https://bun.sh/)
 </div>

package/dist/mcp-server/prompts/definitions/analyze-trial-landscape.prompt.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/prompts/definitions/analyze-trial-landscape.prompt.js CHANGED Viewed

@@ -6,13 +6,24 @@ import { prompt, z } from '@cyanheads/mcp-ts-core';
 export const analyzeTrialLandscape = prompt('analyze_trial_landscape', {
     description: 'Guides analysis of a clinical trial landscape using the ClinicalTrials.gov MCP tools. Adaptable workflow for breakdowns by status, phase, sponsor, geography, etc.',
     args: z.object({
-        topic: z.string().describe('Disease, condition, or research area to analyze.'),
+        // `.min(1)` serializes to an advertised minLength: 1 in prompts/list. No
+        // `.default()` here: the SDK's optionality check reads `type: 'optional'`
+        // and not `default`, so a defaulted arg is advertised required for the
+        // wrong reason — topic is required on its own merits.
+        topic: z.string().min(1).describe('Disease, condition, or research area to analyze.'),
         focusAreas: z
             .string()
             .optional()
             .describe('Comma-separated aspects to focus on, e.g.: "status, phases, sponsors, geography, timeline, interventions".'),
     }),
     generate: (args) => {
+        // `.min(1)` passes for a whitespace-only topic, which renders as an empty
+        // heading and asks the model to analyze nothing. Prompts have no error
+        // contract — the framework's registration catch converts this throw into
+        // an McpError carrying the message.
+        if (args.topic.trim().length === 0) {
+            throw new Error("Prompt argument 'topic' was supplied with a blank value. Provide a disease, condition, or research area containing non-whitespace.");
+        }
         const areas = args.focusAreas
             ?.split(',')
             .map((s) => s.trim())

package/dist/mcp-server/prompts/definitions/analyze-trial-landscape.prompt.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/find-eligible.tool.d.ts CHANGED Viewed

@@ -32,9 +32,9 @@ export declare function conditionMatchScore(studyConditions: string[], requested
 export declare const findEligible: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     age: z.ZodNumber;
     sex: z.ZodEnum<{
+        ALL: "ALL";
         FEMALE: "FEMALE";
         MALE: "MALE";
-        ALL: "ALL";
     }>;
     conditions: z.ZodArray<z.ZodString>;
     location: z.ZodObject<{
@@ -49,6 +49,11 @@ export declare const findEligible: import("@cyanheads/mcp-ts-core").ToolDefiniti
     studies: z.ZodArray<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
     totalCount: z.ZodOptional<z.ZodNumber>;
 }, z.core.$strip>, readonly [{
+    readonly reason: "blank_value";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "A parameter was supplied with a blank, whitespace-only, or empty-list value.";
+    readonly recovery: "Omit the parameter entirely to leave it unset — omission and a blank value mean different things here. To constrain the request, supply a value containing non-whitespace; for list parameters, supply at least one non-blank entry.";
+}, {
     readonly reason: "rate_limited";
     readonly code: JsonRpcErrorCode.RateLimited;
     readonly when: "ClinicalTrials.gov returned 429 after retry budget exhausted.";

package/dist/mcp-server/tools/definitions/find-eligible.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/find-eligible.tool.js CHANGED Viewed

@@ -6,6 +6,7 @@ import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
 import { formatRemainingStudyFields } from '../utils/format-helpers.js';
+import { blankValueMessage, firstBlankListParam, firstBlankParam } from '../utils/query-helpers.js';
 import { RECOVERY_HINTS } from '../utils/recovery-hints.js';
 /**
  * Score a study location against the user's stated location. Higher = better
@@ -151,6 +152,12 @@ export const findEligible = tool('clinicaltrials_find_eligible', {
         openWorldHint: true,
     },
     errors: [
+        {
+            reason: 'blank_value',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'A parameter was supplied with a blank, whitespace-only, or empty-list value.',
+            recovery: RECOVERY_HINTS.blank_value,
+        },
         {
             reason: 'rate_limited',
             code: JsonRpcErrorCode.RateLimited,
@@ -166,7 +173,6 @@ export const findEligible = tool('clinicaltrials_find_eligible', {
             .describe("Patient's biological sex. Use 'ALL' to include studies regardless of sex restrictions."),
         conditions: z
             .array(z.string())
-            .min(1)
             .describe('Medical conditions or diagnoses, e.g. ["Type 2 Diabetes", "Hypertension"]. Each entry is matched as a condition (multi-word entries match as a phrase); multiple entries are combined with OR, so studies for any listed condition qualify. Returned studies are re-ranked so those whose own condition list names a requested condition rank above tangential matches the upstream fuzzy search pulls in via the MeSH umbrella.'),
         location: z
             .object({
@@ -266,6 +272,18 @@ export const findEligible = tool('clinicaltrials_find_eligible', {
         },
     },
     async handler(input, ctx) {
+        // A blank condition or country is dropped before the upstream query is
+        // built, so the call would answer with trials unrelated to anything the
+        // caller asked for. Reject in the handler — a schema-only rejection
+        // surfaces as a bare -32602 with no reason and no recovery hint.
+        const blankParam = firstBlankListParam({ conditions: input.conditions }) ??
+            firstBlankParam({ 'location.country': input.location.country });
+        if (blankParam) {
+            throw ctx.fail('blank_value', blankValueMessage(blankParam), {
+                param: blankParam,
+                ...ctx.recoveryFor('blank_value'),
+            });
+        }
         const service = getClinicalTrialsService();
         const conditionQuery = input.conditions
             .map((c) => (c.includes(' ') ? `"${c}"` : c))
@@ -277,9 +295,27 @@ export const findEligible = tool('clinicaltrials_find_eligible', {
         ].filter(Boolean);
         const locationQuery = locationParts.join(', ');
         const statusFilter = input.recruitingOnly ? ['RECRUITING'] : undefined;
+        /**
+         * Each age bound is ORed with its MISSING counterpart. An
+         * `AREA[Field]RANGE[…]` predicate matches only studies that publish that
+         * field, so a closed range alone drops every study registered as "18 Years
+         * and older" — it carries a minimumAge and no maximumAge, the most
+         * permissive eligibility shape in the registry and the majority of
+         * recruiting trials. An absent bound is unbounded, not disqualifying.
+         *
+         * The widening cannot over-admit: `MISSING` and `RANGE[…]` are mutually
+         * exclusive on the same field (a study either publishes it or it doesn't),
+         * so a study admitted through the MISSING arm never had a declared bound to
+         * violate.
+         *
+         * Neither the Sex nor the HealthyVolunteers arm takes this treatment. An
+         * unrestricted study registers a literal `Sex: ALL` rather than omitting
+         * the field, and an unstated healthy-volunteer policy is not an
+         * affirmative yes.
+         */
         const advancedParts = [
-            `AREA[MinimumAge]RANGE[MIN, ${input.age} years]`,
-            `AREA[MaximumAge]RANGE[${input.age} years, MAX]`,
+            `(AREA[MinimumAge]RANGE[MIN, ${input.age} years] OR AREA[MinimumAge]MISSING)`,
+            `(AREA[MaximumAge]RANGE[${input.age} years, MAX] OR AREA[MaximumAge]MISSING)`,
         ];
         if (input.sex !== 'ALL') {
             advancedParts.push(`(AREA[Sex]ALL OR AREA[Sex]${input.sex})`);

package/dist/mcp-server/tools/definitions/find-eligible.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/get-field-definitions.tool.d.ts CHANGED Viewed

@@ -7,9 +7,9 @@ import { z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 export declare const getFieldDefinitions: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     mode: z.ZodEnum<{
-        search: "search";
         drill: "drill";
         overview: "overview";
+        search: "search";
     }>;
     query: z.ZodOptional<z.ZodString>;
     path: z.ZodOptional<z.ZodString>;

package/dist/mcp-server/tools/definitions/get-field-definitions.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/get-field-values.tool.d.ts CHANGED Viewed

@@ -22,6 +22,11 @@ export declare const getFieldValues: import("@cyanheads/mcp-ts-core").ToolDefini
         falseCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>>;
 }, z.core.$strip>, readonly [{
+    readonly reason: "blank_value";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "A parameter was supplied with a blank, whitespace-only, or empty-list value.";
+    readonly recovery: "Omit the parameter entirely to leave it unset — omission and a blank value mean different things here. To constrain the request, supply a value containing non-whitespace; for list parameters, supply at least one non-blank entry.";
+}, {
     readonly reason: "field_invalid";
     readonly code: JsonRpcErrorCode.ValidationError;
     readonly when: "A requested field name is not a valid PascalCase piece name.";

package/dist/mcp-server/tools/definitions/get-field-values.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"get-field-values.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-field-values.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAKjE,eAAO,MAAM,cAAc~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAgJzB~~,CAAC"}
1	+ {"version":3,"file":"get-field-values.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-field-values.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAKjE,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA2JzB,CAAC"}

package/dist/mcp-server/tools/definitions/get-field-values.tool.js CHANGED Viewed

@@ -5,7 +5,7 @@
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
-import { toArray } from '../utils/query-helpers.js';
+import { blankValueMessage, firstBlankListParam, toArray } from '../utils/query-helpers.js';
 import { RECOVERY_HINTS } from '../utils/recovery-hints.js';
 export const getFieldValues = tool('clinicaltrials_get_field_values', {
     description: `Discover valid values for ClinicalTrials.gov fields with study counts per value. Use to explore available filter options before building a search — e.g., valid OverallStatus, Phase, InterventionType, StudyType, or LeadSponsorClass values.`,
@@ -15,6 +15,12 @@ export const getFieldValues = tool('clinicaltrials_get_field_values', {
         openWorldHint: true,
     },
     errors: [
+        {
+            reason: 'blank_value',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'A parameter was supplied with a blank, whitespace-only, or empty-list value.',
+            recovery: RECOVERY_HINTS.blank_value,
+        },
         {
             reason: 'field_invalid',
             code: JsonRpcErrorCode.ValidationError,
@@ -33,12 +39,9 @@ export const getFieldValues = tool('clinicaltrials_get_field_values', {
         fields: z
             .union([
             z.string().describe('A single PascalCase field name.'),
-            z
-                .array(z.string())
-                .min(1)
-                .describe('Multiple PascalCase field names (at least one required).'),
+            z.array(z.string()).describe('Multiple PascalCase field names (at least one required).'),
         ])
-            .describe(`PascalCase field name(s) to get value statistics for. Examples: OverallStatus, Phase, StudyType, Sex, LeadSponsorClass. Use clinicaltrials_get_field_definitions with a query to find more field names.`),
+            .describe(`PascalCase field name(s) to get value statistics for — an empty list is rejected, not treated as "every field". Examples: OverallStatus, Phase, StudyType, Sex, LeadSponsorClass. Use clinicaltrials_get_field_definitions with a query to find more field names.`),
     }),
     output: z.object({
         fieldStats: z
@@ -80,9 +83,21 @@ export const getFieldValues = tool('clinicaltrials_get_field_values', {
             .describe('One entry per requested field: canonical path, PascalCase piece name, data type, missing/unique counts, and top values with study counts (or trueCount/falseCount for BOOLEAN fields).'),
     }),
     async handler(input, ctx) {
+        // An empty list drops the upstream `fields` param and answers with the
+        // whole ~418-field catalog. Both empty forms land here — the real array and
+        // the stringified '[]', which validates as a string and only resolves to []
+        // after toArray. Judged in the handler, not at the schema: the schema runs
+        // first and surfaces a bare -32602 with no reason and no recovery hint. The
+        // reason is blank_value rather than field_invalid, whose hint sends the
+        // caller off to browse the field tree — not the question a caller who
+        // supplied a blank is asking.
         const fields = toArray(input.fields);
-        if (fields.length === 0) {
-            throw ctx.fail('field_invalid', 'Provide at least one PascalCase field name (e.g. "OverallStatus").', { ...ctx.recoveryFor('field_invalid') });
+        const blankParam = firstBlankListParam({ fields });
+        if (blankParam) {
+            throw ctx.fail('blank_value', blankValueMessage(blankParam), {
+                param: blankParam,
+                ...ctx.recoveryFor('blank_value'),
+            });
         }
         const service = getClinicalTrialsService();
         const stats = await service.getFieldValues(fields, ctx);

package/dist/mcp-server/tools/definitions/get-field-values.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-study-count.tool.d.ts CHANGED Viewed

@@ -19,6 +19,11 @@ export declare const getStudyCount: import("@cyanheads/mcp-ts-core").ToolDefinit
 }, z.core.$strip>, z.ZodObject<{
     totalCount: z.ZodNumber;
 }, z.core.$strip>, readonly [{
+    readonly reason: "blank_value";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "A parameter was supplied with a blank, whitespace-only, or empty-list value.";
+    readonly recovery: "Omit the parameter entirely to leave it unset — omission and a blank value mean different things here. To constrain the request, supply a value containing non-whitespace; for list parameters, supply at least one non-blank entry.";
+}, {
     readonly reason: "field_invalid";
     readonly code: JsonRpcErrorCode.ValidationError;
     readonly when: "A field name in the advanced filter or AREA[] expression is invalid (often a module name instead of a piece name).";

package/dist/mcp-server/tools/definitions/get-study-count.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-study-count.tool.js CHANGED Viewed

@@ -5,7 +5,7 @@
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
-import { buildAdvancedFilter, toArray } from '../utils/query-helpers.js';
+import { blankValueMessage, buildAdvancedFilter, firstBlankListParam, firstBlankParam, toArray, } from '../utils/query-helpers.js';
 import { RECOVERY_HINTS } from '../utils/recovery-hints.js';
 export const getStudyCount = tool('clinicaltrials_get_study_count', {
     description: `Get total clinical trial study count from ClinicalTrials.gov matching a query, without fetching study data. Fast and lightweight. Use for quick statistics or to build breakdowns by calling multiple times with different filters (e.g., count by phase, count by status, count recruiting vs completed for a condition).`,
@@ -15,6 +15,12 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
         openWorldHint: true,
     },
     errors: [
+        {
+            reason: 'blank_value',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'A parameter was supplied with a blank, whitespace-only, or empty-list value.',
+            recovery: RECOVERY_HINTS.blank_value,
+        },
         {
             reason: 'field_invalid',
             code: JsonRpcErrorCode.ValidationError,
@@ -45,45 +51,45 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
         query: z
             .string()
             .optional()
-            .describe('General free-text search across all fields. Plain words plus AND, OR, NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression — those work here as well as in advancedFilter, so AREA[Phase]PHASE2 is accepted in this parameter; a stray bracket fails. `( )` group sub-expressions and work when matched; `,` acts as AND. The dedicated *Query parameters (conditionQuery, interventionQuery, etc.) scope a search to one field.'),
+            .describe('General free-text search across all fields. Runs the 57-field relevance search ClinicalTrials.gov publishes for this parameter — NCTId, NCTIdAlias, OrgStudyId, SecondaryId, Acronym, BriefTitle, OfficialTitle, Condition, InterventionName, InterventionOtherName, Phase, StdAge, StudyType, BriefSummary, outcome measures and their descriptions, LeadSponsorName, CollaboratorName, the Location* fields, the Design* fields, and the ConditionAncestorTerm/InterventionAncestorTerm MeSH umbrellas — so a hit need not carry your term in the field you had in mind. Plain words plus AND, OR, NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression — those work here as well as in advancedFilter, so AREA[Phase]PHASE2 is accepted in this parameter; a stray bracket fails. `( )` group sub-expressions and work when matched; `,` acts as AND. The dedicated *Query parameters (conditionQuery, interventionQuery, etc.) scope a search to one field.'),
         conditionQuery: z
             .string()
             .optional()
-            .describe('Condition/disease-specific search. E.g., "Type 2 Diabetes", "non-small cell lung cancer". Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
+            .describe('Condition/disease-specific search. E.g., "Type 2 Diabetes", "non-small cell lung cancer". Matches Condition, BriefTitle, OfficialTitle, ConditionMeshTerm, ConditionAncestorTerm, Keyword, and NCTId. ConditionAncestorTerm is the MeSH umbrella above the conditions a study itself lists, so results run broader than those lists — a study can match a parent term it never names. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
         interventionQuery: z
             .string()
             .optional()
-            .describe('Intervention/treatment search. E.g., "pembrolizumab", "cognitive behavioral therapy". Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
+            .describe('Intervention/treatment search. E.g., "pembrolizumab", "cognitive behavioral therapy". Matches InterventionName, InterventionType, ArmGroupType, InterventionOtherName, BriefTitle, OfficialTitle, ArmGroupLabel, InterventionMeshTerm, Keyword, InterventionAncestorTerm, InterventionDescription, and ArmGroupDescription. InterventionAncestorTerm is the MeSH umbrella above the interventions a study itself lists, so results run broader than those lists. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
         locationQuery: z
             .string()
             .optional()
-            .describe('Location search — city, state, country, or facility name. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
+            .describe('Location search — city, state, country, or facility name. Matches LocationCity, LocationState, LocationCountry, LocationFacility, and LocationZip; a study matches when any of its sites does. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
         sponsorQuery: z
             .string()
             .optional()
-            .describe('Sponsor/collaborator name search. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
+            .describe('Sponsor/collaborator name search. Matches LeadSponsorName, CollaboratorName, and OrgFullName. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
         titleQuery: z
             .string()
             .optional()
-            .describe('Search within study titles and acronyms only. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
+            .describe('Search within study titles and acronyms only. Matches Acronym, BriefTitle, and OfficialTitle. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
         outcomeQuery: z
             .string()
             .optional()
-            .describe('Search within outcome measure fields. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
+            .describe('Search within outcome measure fields. Matches PrimaryOutcomeMeasure, SecondaryOutcomeMeasure, OtherOutcomeMeasure, and OutcomeMeasureTitle, plus their description counterparts PrimaryOutcomeDescription, SecondaryOutcomeDescription, OtherOutcomeDescription, OutcomeMeasureDescription, and OutcomeMeasurePopulationDescription — so a term appearing only in outcome prose still matches. Plain words plus AND/OR/NOT. `[ ]` are valid only inside an AREA[FieldName]value or RANGE[min, max] expression, which this parameter accepts; a stray bracket fails. `( )` group sub-expressions when matched; `,` acts as AND.'),
         statusFilter: z
             .union([
             z.string().describe('A single status value.'),
             z.array(z.string()).describe('Multiple status values (OR).'),
         ])
             .optional()
-            .describe(`Filter by study status. Values: RECRUITING, COMPLETED, ACTIVE_NOT_RECRUITING, NOT_YET_RECRUITING, ENROLLING_BY_INVITATION, SUSPENDED, TERMINATED, WITHDRAWN, UNKNOWN, WITHHELD, NO_LONGER_AVAILABLE, AVAILABLE, APPROVED_FOR_MARKETING, TEMPORARILY_NOT_AVAILABLE.`),
+            .describe(`Filter by study status. Omit to count all statuses — an empty list is rejected, not treated as "no filter". Values: RECRUITING, COMPLETED, ACTIVE_NOT_RECRUITING, NOT_YET_RECRUITING, ENROLLING_BY_INVITATION, SUSPENDED, TERMINATED, WITHDRAWN, UNKNOWN, WITHHELD, NO_LONGER_AVAILABLE, AVAILABLE, APPROVED_FOR_MARKETING, TEMPORARILY_NOT_AVAILABLE.`),
         phaseFilter: z
             .union([
             z.string().describe('A single phase value.'),
             z.array(z.string()).describe('Multiple phase values (OR).'),
         ])
             .optional()
-            .describe('Filter by trial phase. Values: EARLY_PHASE1, PHASE1, PHASE2, PHASE3, PHASE4, NA.'),
+            .describe('Filter by trial phase. Omit to count all phases — an empty list is rejected, not treated as "no filter". Values: EARLY_PHASE1, PHASE1, PHASE2, PHASE3, PHASE4, NA.'),
         advancedFilter: z
             .string()
             .optional()
@@ -118,6 +124,31 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
         },
     },
     async handler(input, ctx) {
+        // A supplied-but-blank value is not an omitted one: buildSearchQuery drops
+        // falsy values, so a blank query would return the size of the whole
+        // registry as if it were the answer to the caller's question. advancedFilter
+        // fails both ways — '' is falsy and dropped, while ' ' is truthy and splices
+        // a blank term into a joined boolean expression. Reject in the handler — a
+        // schema-only rejection surfaces as a bare -32602 with no reason and no
+        // recovery hint.
+        const statusFilter = toArray(input.statusFilter);
+        const phaseFilter = toArray(input.phaseFilter);
+        const blankParam = firstBlankParam({
+            query: input.query,
+            conditionQuery: input.conditionQuery,
+            interventionQuery: input.interventionQuery,
+            locationQuery: input.locationQuery,
+            sponsorQuery: input.sponsorQuery,
+            titleQuery: input.titleQuery,
+            outcomeQuery: input.outcomeQuery,
+            advancedFilter: input.advancedFilter,
+        }) ?? firstBlankListParam({ statusFilter, phaseFilter });
+        if (blankParam) {
+            throw ctx.fail('blank_value', blankValueMessage(blankParam), {
+                param: blankParam,
+                ...ctx.recoveryFor('blank_value'),
+            });
+        }
         const service = getClinicalTrialsService();
         const result = await service.searchStudies({
             queryTerm: input.query,
@@ -127,8 +158,8 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
             querySpons: input.sponsorQuery,
             queryTitles: input.titleQuery,
             queryOutc: input.outcomeQuery,
-            filterOverallStatus: toArray(input.statusFilter),
-            filterAdvanced: buildAdvancedFilter(toArray(input.phaseFilter), input.advancedFilter),
+            filterOverallStatus: statusFilter,
+            filterAdvanced: buildAdvancedFilter(phaseFilter, input.advancedFilter),
             countTotal: true,
             pageSize: 0,
             includeUnknownEnrollment: input.includeUnknownEnrollment,

package/dist/mcp-server/tools/definitions/get-study-count.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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