npm - clinicaltrialsgov-mcp-server - Versions diffs - 2.8.4 → 2.8.6 - Mend

clinicaltrialsgov-mcp-server 2.8.4 → 2.8.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (41) hide show

package/README.md CHANGED Viewed

@@ -7,7 +7,7 @@
 <div align="center">
-[![npm](https://img.shields.io/npm/v/clinicaltrialsgov-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/clinicaltrialsgov-mcp-server) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/clinicaltrialsgov-mcp-server) [![Version](https://img.shields.io/badge/Version-2.8.4-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.14-blueviolet.svg?style=flat-square)](https://bun.sh/)
+[![npm](https://img.shields.io/npm/v/clinicaltrialsgov-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/clinicaltrialsgov-mcp-server) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/clinicaltrialsgov-mcp-server) [![Version](https://img.shields.io/badge/Version-2.8.6-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.14-blueviolet.svg?style=flat-square)](https://bun.sh/)
 </div>

package/dist/mcp-server/prompts/definitions/analyze-trial-landscape.prompt.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/prompts/definitions/analyze-trial-landscape.prompt.js CHANGED Viewed

@@ -6,13 +6,24 @@ import { prompt, z } from '@cyanheads/mcp-ts-core';
 export const analyzeTrialLandscape = prompt('analyze_trial_landscape', {
     description: 'Guides analysis of a clinical trial landscape using the ClinicalTrials.gov MCP tools. Adaptable workflow for breakdowns by status, phase, sponsor, geography, etc.',
     args: z.object({
-        topic: z.string().describe('Disease, condition, or research area to analyze.'),
+        // `.min(1)` serializes to an advertised minLength: 1 in prompts/list. No
+        // `.default()` here: the SDK's optionality check reads `type: 'optional'`
+        // and not `default`, so a defaulted arg is advertised required for the
+        // wrong reason — topic is required on its own merits.
+        topic: z.string().min(1).describe('Disease, condition, or research area to analyze.'),
         focusAreas: z
             .string()
             .optional()
             .describe('Comma-separated aspects to focus on, e.g.: "status, phases, sponsors, geography, timeline, interventions".'),
     }),
     generate: (args) => {
+        // `.min(1)` passes for a whitespace-only topic, which renders as an empty
+        // heading and asks the model to analyze nothing. Prompts have no error
+        // contract — the framework's registration catch converts this throw into
+        // an McpError carrying the message.
+        if (args.topic.trim().length === 0) {
+            throw new Error("Prompt argument 'topic' was supplied with a blank value. Provide a disease, condition, or research area containing non-whitespace.");
+        }
         const areas = args.focusAreas
             ?.split(',')
             .map((s) => s.trim())

package/dist/mcp-server/prompts/definitions/analyze-trial-landscape.prompt.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/find-eligible.tool.d.ts CHANGED Viewed

@@ -32,9 +32,9 @@ export declare function conditionMatchScore(studyConditions: string[], requested
 export declare const findEligible: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     age: z.ZodNumber;
     sex: z.ZodEnum<{
+        ALL: "ALL";
         FEMALE: "FEMALE";
         MALE: "MALE";
-        ALL: "ALL";
     }>;
     conditions: z.ZodArray<z.ZodString>;
     location: z.ZodObject<{
@@ -49,6 +49,11 @@ export declare const findEligible: import("@cyanheads/mcp-ts-core").ToolDefiniti
     studies: z.ZodArray<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
     totalCount: z.ZodOptional<z.ZodNumber>;
 }, z.core.$strip>, readonly [{
+    readonly reason: "blank_value";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "A parameter was supplied with a blank, whitespace-only, or empty-list value.";
+    readonly recovery: "Omit the parameter entirely to leave it unset — omission and a blank value mean different things here. To constrain the request, supply a value containing non-whitespace; for list parameters, supply at least one non-blank entry.";
+}, {
     readonly reason: "rate_limited";
     readonly code: JsonRpcErrorCode.RateLimited;
     readonly when: "ClinicalTrials.gov returned 429 after retry budget exhausted.";

package/dist/mcp-server/tools/definitions/find-eligible.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/find-eligible.tool.js CHANGED Viewed

@@ -6,6 +6,7 @@ import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
 import { formatRemainingStudyFields } from '../utils/format-helpers.js';
+import { blankValueMessage, firstBlankListParam, firstBlankParam } from '../utils/query-helpers.js';
 import { RECOVERY_HINTS } from '../utils/recovery-hints.js';
 /**
  * Score a study location against the user's stated location. Higher = better
@@ -151,6 +152,12 @@ export const findEligible = tool('clinicaltrials_find_eligible', {
         openWorldHint: true,
     },
     errors: [
+        {
+            reason: 'blank_value',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'A parameter was supplied with a blank, whitespace-only, or empty-list value.',
+            recovery: RECOVERY_HINTS.blank_value,
+        },
         {
             reason: 'rate_limited',
             code: JsonRpcErrorCode.RateLimited,
@@ -266,6 +273,18 @@ export const findEligible = tool('clinicaltrials_find_eligible', {
         },
     },
     async handler(input, ctx) {
+        // A blank condition or country is dropped before the upstream query is
+        // built, so the call would answer with trials unrelated to anything the
+        // caller asked for. Reject in the handler — a schema-only rejection
+        // surfaces as a bare -32602 with no reason and no recovery hint.
+        const blankParam = firstBlankListParam({ conditions: input.conditions }) ??
+            firstBlankParam({ 'location.country': input.location.country });
+        if (blankParam) {
+            throw ctx.fail('blank_value', blankValueMessage(blankParam), {
+                param: blankParam,
+                ...ctx.recoveryFor('blank_value'),
+            });
+        }
         const service = getClinicalTrialsService();
         const conditionQuery = input.conditions
             .map((c) => (c.includes(' ') ? `"${c}"` : c))

package/dist/mcp-server/tools/definitions/find-eligible.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/get-field-definitions.tool.d.ts CHANGED Viewed

@@ -7,9 +7,9 @@ import { z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 export declare const getFieldDefinitions: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     mode: z.ZodEnum<{
-        search: "search";
         drill: "drill";
         overview: "overview";
+        search: "search";
     }>;
     query: z.ZodOptional<z.ZodString>;
     path: z.ZodOptional<z.ZodString>;

package/dist/mcp-server/tools/definitions/get-field-definitions.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/get-study-count.tool.d.ts CHANGED Viewed

@@ -19,6 +19,11 @@ export declare const getStudyCount: import("@cyanheads/mcp-ts-core").ToolDefinit
 }, z.core.$strip>, z.ZodObject<{
     totalCount: z.ZodNumber;
 }, z.core.$strip>, readonly [{
+    readonly reason: "blank_value";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "A parameter was supplied with a blank, whitespace-only, or empty-list value.";
+    readonly recovery: "Omit the parameter entirely to leave it unset — omission and a blank value mean different things here. To constrain the request, supply a value containing non-whitespace; for list parameters, supply at least one non-blank entry.";
+}, {
     readonly reason: "field_invalid";
     readonly code: JsonRpcErrorCode.ValidationError;
     readonly when: "A field name in the advanced filter or AREA[] expression is invalid (often a module name instead of a piece name).";

package/dist/mcp-server/tools/definitions/get-study-count.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"get-study-count.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study-count.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAKjE~~,eAAO,MAAM,aAAa~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA4LxB~~,CAAC"}
1	+ {"version":3,"file":"get-study-count.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study-count.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAWjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA+NxB,CAAC"}

package/dist/mcp-server/tools/definitions/get-study-count.tool.js CHANGED Viewed

@@ -5,7 +5,7 @@
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
-import { buildAdvancedFilter, toArray } from '../utils/query-helpers.js';
+import { blankValueMessage, buildAdvancedFilter, firstBlankListParam, firstBlankParam, toArray, } from '../utils/query-helpers.js';
 import { RECOVERY_HINTS } from '../utils/recovery-hints.js';
 export const getStudyCount = tool('clinicaltrials_get_study_count', {
     description: `Get total clinical trial study count from ClinicalTrials.gov matching a query, without fetching study data. Fast and lightweight. Use for quick statistics or to build breakdowns by calling multiple times with different filters (e.g., count by phase, count by status, count recruiting vs completed for a condition).`,
@@ -15,6 +15,12 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
         openWorldHint: true,
     },
     errors: [
+        {
+            reason: 'blank_value',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'A parameter was supplied with a blank, whitespace-only, or empty-list value.',
+            recovery: RECOVERY_HINTS.blank_value,
+        },
         {
             reason: 'field_invalid',
             code: JsonRpcErrorCode.ValidationError,
@@ -73,17 +79,17 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
         statusFilter: z
             .union([
             z.string().describe('A single status value.'),
-            z.array(z.string()).describe('Multiple status values (OR).'),
+            z.array(z.string()).min(1).describe('Multiple status values (OR).'),
         ])
             .optional()
-            .describe(`Filter by study status. Values: RECRUITING, COMPLETED, ACTIVE_NOT_RECRUITING, NOT_YET_RECRUITING, ENROLLING_BY_INVITATION, SUSPENDED, TERMINATED, WITHDRAWN, UNKNOWN, WITHHELD, NO_LONGER_AVAILABLE, AVAILABLE, APPROVED_FOR_MARKETING, TEMPORARILY_NOT_AVAILABLE.`),
+            .describe(`Filter by study status. Omit to count all statuses — an empty list is rejected, not treated as "no filter". Values: RECRUITING, COMPLETED, ACTIVE_NOT_RECRUITING, NOT_YET_RECRUITING, ENROLLING_BY_INVITATION, SUSPENDED, TERMINATED, WITHDRAWN, UNKNOWN, WITHHELD, NO_LONGER_AVAILABLE, AVAILABLE, APPROVED_FOR_MARKETING, TEMPORARILY_NOT_AVAILABLE.`),
         phaseFilter: z
             .union([
             z.string().describe('A single phase value.'),
-            z.array(z.string()).describe('Multiple phase values (OR).'),
+            z.array(z.string()).min(1).describe('Multiple phase values (OR).'),
         ])
             .optional()
-            .describe('Filter by trial phase. Values: EARLY_PHASE1, PHASE1, PHASE2, PHASE3, PHASE4, NA.'),
+            .describe('Filter by trial phase. Omit to count all phases — an empty list is rejected, not treated as "no filter". Values: EARLY_PHASE1, PHASE1, PHASE2, PHASE3, PHASE4, NA.'),
         advancedFilter: z
             .string()
             .optional()
@@ -118,6 +124,31 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
         },
     },
     async handler(input, ctx) {
+        // A supplied-but-blank value is not an omitted one: buildSearchQuery drops
+        // falsy values, so a blank query would return the size of the whole
+        // registry as if it were the answer to the caller's question. advancedFilter
+        // fails both ways — '' is falsy and dropped, while ' ' is truthy and splices
+        // a blank term into a joined boolean expression. Reject in the handler — a
+        // schema-only rejection surfaces as a bare -32602 with no reason and no
+        // recovery hint.
+        const statusFilter = toArray(input.statusFilter);
+        const phaseFilter = toArray(input.phaseFilter);
+        const blankParam = firstBlankParam({
+            query: input.query,
+            conditionQuery: input.conditionQuery,
+            interventionQuery: input.interventionQuery,
+            locationQuery: input.locationQuery,
+            sponsorQuery: input.sponsorQuery,
+            titleQuery: input.titleQuery,
+            outcomeQuery: input.outcomeQuery,
+            advancedFilter: input.advancedFilter,
+        }) ?? firstBlankListParam({ statusFilter, phaseFilter });
+        if (blankParam) {
+            throw ctx.fail('blank_value', blankValueMessage(blankParam), {
+                param: blankParam,
+                ...ctx.recoveryFor('blank_value'),
+            });
+        }
         const service = getClinicalTrialsService();
         const result = await service.searchStudies({
             queryTerm: input.query,
@@ -127,8 +158,8 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
             querySpons: input.sponsorQuery,
             queryTitles: input.titleQuery,
             queryOutc: input.outcomeQuery,
-            filterOverallStatus: toArray(input.statusFilter),
-            filterAdvanced: buildAdvancedFilter(toArray(input.phaseFilter), input.advancedFilter),
+            filterOverallStatus: statusFilter,
+            filterAdvanced: buildAdvancedFilter(phaseFilter, input.advancedFilter),
             countTotal: true,
             pageSize: 0,
             includeUnknownEnrollment: input.includeUnknownEnrollment,

package/dist/mcp-server/tools/definitions/get-study-count.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-study-results.tool.d.ts CHANGED Viewed

@@ -7,17 +7,17 @@ import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 export declare const getStudyResults: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     nctIds: z.ZodUnion<readonly [z.ZodString, z.ZodArray<z.ZodString>]>;
     sections: z.ZodOptional<z.ZodUnion<readonly [z.ZodEnum<{
-        outcomes: "outcomes";
         adverseEvents: "adverseEvents";
-        participantFlow: "participantFlow";
         baseline: "baseline";
         moreInfo: "moreInfo";
-    }>, z.ZodArray<z.ZodEnum<{
         outcomes: "outcomes";
-        adverseEvents: "adverseEvents";
         participantFlow: "participantFlow";
+    }>, z.ZodArray<z.ZodEnum<{
+        adverseEvents: "adverseEvents";
         baseline: "baseline";
         moreInfo: "moreInfo";
+        outcomes: "outcomes";
+        participantFlow: "participantFlow";
     }>>]>>;
     summary: z.ZodDefault<z.ZodBoolean>;
 }, z.core.$strip>, z.ZodObject<{
@@ -37,10 +37,10 @@ export declare const getStudyResults: import("@cyanheads/mcp-ts-core").ToolDefin
         error: z.ZodString;
     }, z.core.$strip>>>;
 }, z.core.$strip>, readonly [{
-    readonly reason: "study_not_found";
-    readonly code: JsonRpcErrorCode.NotFound;
-    readonly when: "A provided NCT ID does not match any study at ClinicalTrials.gov.";
-    readonly recovery: "Verify the NCT ID at clinicaltrials.gov or call clinicaltrials_search_studies to discover a valid identifier.";
+    readonly reason: "blank_value";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "A parameter was supplied with a blank, whitespace-only, or empty-list value.";
+    readonly recovery: "Omit the parameter entirely to leave it unset — omission and a blank value mean different things here. To constrain the request, supply a value containing non-whitespace; for list parameters, supply at least one non-blank entry.";
 }, {
     readonly reason: "rate_limited";
     readonly code: JsonRpcErrorCode.RateLimited;

package/dist/mcp-server/tools/definitions/get-study-results.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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