npm - clinicaltrialsgov-mcp-server - Versions diffs - 2.7.2 → 2.7.4 - Mend

clinicaltrialsgov-mcp-server 2.7.2 → 2.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (22) hide show

package/README.md CHANGED Viewed

@@ -7,7 +7,7 @@
 <div align="center">
-[![npm](https://img.shields.io/npm/v/clinicaltrialsgov-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/clinicaltrialsgov-mcp-server) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/clinicaltrialsgov-mcp-server) [![Version](https://img.shields.io/badge/Version-2.7.2-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.2-blueviolet.svg?style=flat-square)](https://bun.sh/)
+[![npm](https://img.shields.io/npm/v/clinicaltrialsgov-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/clinicaltrialsgov-mcp-server) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/clinicaltrialsgov-mcp-server) [![Version](https://img.shields.io/badge/Version-2.7.4-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.2-blueviolet.svg?style=flat-square)](https://bun.sh/)
 </div>

package/dist/mcp-server/tools/definitions/get-field-values.tool.d.ts CHANGED Viewed

@@ -12,6 +12,7 @@ export declare const getFieldValues: import("@cyanheads/mcp-ts-core").ToolDefini
         piece: z.ZodString;
         type: z.ZodString;
         missingStudiesCount: z.ZodOptional<z.ZodNumber>;
+        multiValued: z.ZodOptional<z.ZodBoolean>;
         uniqueValuesCount: z.ZodOptional<z.ZodNumber>;
         topValues: z.ZodOptional<z.ZodArray<z.ZodObject<{
             value: z.ZodString;

package/dist/mcp-server/tools/definitions/get-field-values.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"get-field-values.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-field-values.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAKjE,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA4IzB,CAAC"}

package/dist/mcp-server/tools/definitions/get-field-values.tool.js CHANGED Viewed

@@ -51,6 +51,10 @@ export const getFieldValues = tool('clinicaltrials_get_field_values', {
                 .number()
                 .optional()
                 .describe('Number of studies where this field is absent.'),
+            multiValued: z
+                .boolean()
+                .optional()
+                .describe('True when the field is array-typed (a study can carry several values, e.g. Phase, Condition), so the per-value studiesCount buckets sum above the study total. Use to avoid computing a percentage against the corpus.'),
             // ENUM / STRING fields
             uniqueValuesCount: z.number().optional().describe('Number of distinct values.'),
             topValues: z
@@ -61,7 +65,7 @@ export const getFieldValues = tool('clinicaltrials_get_field_values', {
             })
                 .describe('A value and its study count.'))
                 .optional()
-                .describe('Values ranked by frequency (capped at 250 by the API). Present for ENUM/STRING fields.'),
+                .describe('Values ranked by frequency (capped at 250 by the API). Present for ENUM/STRING fields. When multiValued is true, studiesCount sums can exceed the study total.'),
             // BOOLEAN fields
             trueCount: z
                 .number()
@@ -115,6 +119,8 @@ export const getFieldValues = tool('clinicaltrials_get_field_values', {
             }
             if (stat.missingStudiesCount != null && stat.missingStudiesCount > 0)
                 lines.push(`  (missing in ${stat.missingStudiesCount} studies)`);
+            if (stat.multiValued)
+                lines.push('  (multi-valued field — counts may exceed the study total; a study can carry several values)');
         }
         return [{ type: 'text', text: lines.join('\n') }];
     },

package/dist/mcp-server/tools/definitions/get-field-values.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-study.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAyJjE,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAmgBnB,CAAC"}

package/dist/mcp-server/tools/definitions/get-study.tool.js CHANGED Viewed

@@ -7,18 +7,8 @@ import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
 import { nctIdSchema } from '../utils/_schemas.js';
+import { haversineMi } from '../utils/geo-helpers.js';
 import { RECOVERY_HINTS } from '../utils/recovery-hints.js';
-const EARTH_RADIUS_MI = 3958.7613;
-/** Great-circle distance in miles between two lat/lon points (Haversine). */
-function haversineMi(a, b) {
-    const toRad = (d) => (d * Math.PI) / 180;
-    const dLat = toRad(b.lat - a.lat);
-    const dLon = toRad(b.lon - a.lon);
-    const lat1 = toRad(a.lat);
-    const lat2 = toRad(b.lat);
-    const h = Math.sin(dLat / 2) ** 2 + Math.cos(lat1) * Math.cos(lat2) * Math.sin(dLon / 2) ** 2;
-    return 2 * EARTH_RADIUS_MI * Math.asin(Math.min(1, Math.sqrt(h)));
-}
 /**
  * Apply caller-requested filters to the study so structuredContent and format()
  * see the same data. A limit (and its corresponding upstream total) is recorded

package/dist/mcp-server/tools/definitions/get-study.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/search-studies.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"search-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-studies.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAsBjE~~,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~EAkVxB~~,CAAC"}
1	+ {"version":3,"file":"search-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-studies.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAuDjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsXxB,CAAC"}

package/dist/mcp-server/tools/definitions/search-studies.tool.js CHANGED Viewed

@@ -8,6 +8,7 @@ import { getServerConfig } from '../../../config/server-config.js';
 import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
 import { nctIdSchema } from '../utils/_schemas.js';
 import { formatRemainingStudyFields } from '../utils/format-helpers.js';
+import { haversineMi, parseGeoFilterCenter, } from '../utils/geo-helpers.js';
 import { buildAdvancedFilter, toArray } from '../utils/query-helpers.js';
 import { RECOVERY_HINTS } from '../utils/recovery-hints.js';
 const { maxPageSize } = getServerConfig();
@@ -20,7 +21,30 @@ const SEARCH_RENDERED = new Set([
     'protocolSection.designModule.enrollmentInfo',
     'protocolSection.sponsorCollaboratorsModule.leadSponsor',
     'protocolSection.conditionsModule.conditions',
+    'protocolSection.contactsLocationsModule.locations',
 ]);
+/**
+ * When a geoFilter is active, re-rank each study's `locations[]` by proximity to
+ * the filter center so the matched site leads instead of the upstream-order first
+ * entry — mirroring get_study_record's nearLocation → distanceMi annotation.
+ * Sites with a geoPoint are sorted nearest-first and annotated with distanceMi;
+ * sites without coordinates are preserved at the end (re-rank only, never filter).
+ * Mutates each study's locations array in place.
+ */
+function reRankLocationsByProximity(studies, center) {
+    for (const study of studies) {
+        const locationsModule = study.protocolSection?.contactsLocationsModule;
+        const locations = locationsModule?.locations;
+        if (!locationsModule || !locations?.length)
+            continue;
+        const withGeo = locations
+            .filter((l) => l.geoPoint != null)
+            .map((l) => ({ ...l, distanceMi: haversineMi(center, l.geoPoint) }))
+            .sort((a, b) => a.distanceMi - b.distanceMi);
+        const withoutGeo = locations.filter((l) => l.geoPoint == null);
+        locationsModule.locations = [...withGeo, ...withoutGeo];
+    }
+}
 export const searchStudies = tool('clinicaltrials_search_studies', {
     description: `Search for clinical trial studies from ClinicalTrials.gov. Supports full-text and field-specific queries, status/phase/geographic filters, pagination, sorting, and field selection. Use the fields parameter to reduce payload size — full study records are ~70KB each.`,
     annotations: {
@@ -111,7 +135,7 @@ export const searchStudies = tool('clinicaltrials_search_studies', {
         geoFilter: z
             .string()
             .optional()
-            .describe(`Geographic proximity filter. Format: distance(lat,lon,radius). E.g., "distance(47.6062,-122.3321,50mi)" for studies within 50 miles of Seattle.`),
+            .describe(`Geographic proximity filter. Format: distance(lat,lon,radius). E.g., "distance(47.6062,-122.3321,50mi)" for studies within 50 miles of Seattle. When set, each study's locations are re-sorted by proximity to the center so the nearest matched site leads, annotated with its distance in miles; the full location list is preserved.`),
         nctIds: z
             .union([
             nctIdSchema.describe('A single NCT ID.'),
@@ -204,6 +228,13 @@ export const searchStudies = tool('clinicaltrials_search_studies', {
             count: result.studies.length,
             totalCount: result.totalCount,
         });
+        // With an active geoFilter, lead each study with its matched (nearest) site:
+        // upstream returns locations in registration order, so the first entry is
+        // often a far-away site and the filter reads as broken. Re-rank only — the
+        // full locations[] set is preserved.
+        const geoCenter = parseGeoFilterCenter(input.geoFilter);
+        if (geoCenter)
+            reRankLocationsByProximity(result.studies, geoCenter);
         // Echo the applied search criteria on every response (not only empty ones)
         // so agents can confirm which filters were actually in effect when a result
         // set is smaller than expected. sentinelFilterActive flags the default
@@ -313,6 +344,30 @@ export const searchStudies = tool('clinicaltrials_search_studies', {
             const statusStr = status ? ` [${status}]` : '';
             const metaStr = meta.length ? `\n  ${meta.join(' | ')}` : '';
             lines.push(`- **${nctId}**${titleStr}${statusStr}${metaStr}`);
+            // Surface the study's site so a result row always shows where the trial
+            // runs — the headline carries no location, and locations[] is otherwise
+            // suppressed from the field dump below. With an active geoFilter the handler
+            // re-ranked locations by proximity, so locations[0] is the nearest matched
+            // site: lead with it and its distanceMi. Without one, show the first
+            // registered site. Either way the full locations[] is preserved.
+            const locations = s.protocolSection?.contactsLocationsModule?.locations;
+            const lead = locations?.[0];
+            if (lead) {
+                const place = [lead.facility, lead.city, lead.state, lead.country]
+                    .filter(Boolean)
+                    .join(', ');
+                if (place) {
+                    const siteCount = locations?.length ?? 0;
+                    if (lead.distanceMi != null) {
+                        const totalStr = siteCount > 1 ? ` of ${siteCount} sites` : '';
+                        lines.push(`  Nearest site: ${place} (${lead.distanceMi.toFixed(1)} mi from geoFilter center${totalStr})`);
+                    }
+                    else {
+                        const totalStr = siteCount > 1 ? ` (1 of ${siteCount} sites)` : '';
+                        lines.push(`  Site: ${place}${totalStr}`);
+                    }
+                }
+            }
             lines.push(...formatRemainingStudyFields(study, SEARCH_RENDERED, overflowOpts));
         }
         if (result.nextPageToken) {

package/dist/mcp-server/tools/definitions/search-studies.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/utils/geo-helpers.d.ts ADDED Viewed

@@ -0,0 +1,32 @@
+/**
+ * @fileoverview Geographic helpers shared by location-aware tools — great-circle
+ * distance and parsing of the `geoFilter` center coordinates.
+ * @module mcp-server/tools/utils/geo-helpers
+ */
+import type { StudyLocation } from '../../../services/clinical-trials/types.js';
+/** Mean Earth radius in miles, used by the Haversine formula. */
+export declare const EARTH_RADIUS_MI = 3958.7613;
+/** A study location annotated with its distance from a reference point. */
+export type LocationWithDistance = StudyLocation & {
+    distanceMi?: number;
+};
+/** Great-circle distance in miles between two lat/lon points (Haversine). */
+export declare function haversineMi(a: {
+    lat: number;
+    lon: number;
+}, b: {
+    lat: number;
+    lon: number;
+}): number;
+/**
+ * Extract the center coordinates from a `geoFilter` value of the form
+ * `distance(lat, lon, radius)`. The radius (with an optional `mi`/`km` suffix) is
+ * already applied by the upstream query, so only lat/lon are returned here — used
+ * to re-rank a study's locations by proximity. Tolerates surrounding whitespace.
+ * Returns undefined when the value isn't a parseable distance expression.
+ */
+export declare function parseGeoFilterCenter(geoFilter: string | undefined): {
+    lat: number;
+    lon: number;
+} | undefined;
+//# sourceMappingURL=geo-helpers.d.ts.map

package/dist/mcp-server/tools/utils/geo-helpers.d.ts.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"geo-helpers.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/utils/geo-helpers.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qCAAqC,CAAC;AAEzE,iEAAiE;AACjE,eAAO,MAAM,eAAe,YAAY,CAAC;AAEzC,2EAA2E;AAC3E,MAAM,MAAM,oBAAoB,GAAG,aAAa,GAAG;IAAE,UAAU,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC;AAE3E,6EAA6E;AAC7E,wBAAgB,WAAW,CACzB,CAAC,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EAC/B,CAAC,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,GAC9B,MAAM,CAQR;AAED;;;;;;GAMG;AACH,wBAAgB,oBAAoB,CAClC,SAAS,EAAE,MAAM,GAAG,SAAS,GAC5B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,GAAG,SAAS,CAQ1C"}

package/dist/mcp-server/tools/utils/geo-helpers.js ADDED Viewed

@@ -0,0 +1,37 @@
+/**
+ * @fileoverview Geographic helpers shared by location-aware tools — great-circle
+ * distance and parsing of the `geoFilter` center coordinates.
+ * @module mcp-server/tools/utils/geo-helpers
+ */
+/** Mean Earth radius in miles, used by the Haversine formula. */
+export const EARTH_RADIUS_MI = 3958.7613;
+/** Great-circle distance in miles between two lat/lon points (Haversine). */
+export function haversineMi(a, b) {
+    const toRad = (d) => (d * Math.PI) / 180;
+    const dLat = toRad(b.lat - a.lat);
+    const dLon = toRad(b.lon - a.lon);
+    const lat1 = toRad(a.lat);
+    const lat2 = toRad(b.lat);
+    const h = Math.sin(dLat / 2) ** 2 + Math.cos(lat1) * Math.cos(lat2) * Math.sin(dLon / 2) ** 2;
+    return 2 * EARTH_RADIUS_MI * Math.asin(Math.min(1, Math.sqrt(h)));
+}
+/**
+ * Extract the center coordinates from a `geoFilter` value of the form
+ * `distance(lat, lon, radius)`. The radius (with an optional `mi`/`km` suffix) is
+ * already applied by the upstream query, so only lat/lon are returned here — used
+ * to re-rank a study's locations by proximity. Tolerates surrounding whitespace.
+ * Returns undefined when the value isn't a parseable distance expression.
+ */
+export function parseGeoFilterCenter(geoFilter) {
+    if (!geoFilter)
+        return;
+    const match = geoFilter.match(/distance\(\s*(-?\d+(?:\.\d+)?)\s*,\s*(-?\d+(?:\.\d+)?)\s*,/i);
+    if (!match)
+        return;
+    const lat = Number(match[1]);
+    const lon = Number(match[2]);
+    if (!Number.isFinite(lat) || !Number.isFinite(lon))
+        return;
+    return { lat, lon };
+}
+//# sourceMappingURL=geo-helpers.js.map

package/dist/mcp-server/tools/utils/geo-helpers.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"geo-helpers.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/utils/geo-helpers.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH,iEAAiE;AACjE,MAAM,CAAC,MAAM,eAAe,GAAG,SAAS,CAAC;AAKzC,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CACzB,CAA+B,EAC/B,CAA+B;IAE/B,MAAM,KAAK,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC;IACjD,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;IAClC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;IAClC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;IAC1B,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;IAC1B,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC;IAC9F,OAAO,CAAC,GAAG,eAAe,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AACpE,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,oBAAoB,CAClC,SAA6B;IAE7B,IAAI,CAAC,SAAS;QAAE,OAAO;IACvB,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,6DAA6D,CAAC,CAAC;IAC7F,IAAI,CAAC,KAAK;QAAE,OAAO;IACnB,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7B,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7B,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC;QAAE,OAAO;IAC3D,OAAO,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC;AACtB,CAAC"}

package/dist/services/clinical-trials/clinical-trials-service.d.ts CHANGED Viewed

@@ -39,6 +39,15 @@ export declare class ClinicalTrialsService {
     getMetadata(includeIndexedOnly: boolean, ctx: Context): Promise<FieldNode[]>;
     /** Get field value statistics for the specified fields. */
     getFieldValues(fields: string[], ctx: Context): Promise<FieldValueStats[]>;
+    /**
+     * Mark each stat as multi-valued by checking the metadata node `type` for an
+     * array marker (`[]`, e.g. `Phase[]`, `text[]`) — the durable source of
+     * cardinality. Note: the stat's own `type` (`ENUM`/`STRING`) is the value
+     * domain, not the array marker, so the metadata node type is the only signal.
+     * Reuses the cached field index (no round-trip); fails open silently if the
+     * metadata index is unavailable.
+     */
+    private annotateMultiValued;
     /**
      * Search the field model by keyword, returning ranked matches with paths and
      * types plus the pre-cap match total for accurate truncation disclosure.

package/dist/services/clinical-trials/clinical-trials-service.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/clinical-trials/clinical-trials-service.js CHANGED Viewed

@@ -101,7 +101,16 @@ export class ClinicalTrialsService {
             await this.validateFields(fields, ctx);
         }
         try {
-            return await this.fetchJson('/stats/field/values', { fields: fields.join('|') }, ctx, { jsonFormat: false });
+            const stats = await this.fetchJson('/stats/field/values', { fields: fields.join('|') }, ctx, { jsonFormat: false });
+            // Flag multi-valued fields so callers can read the per-value counts
+            // correctly — array-type fields (e.g. Phase, Condition) let one study carry
+            // several values, so buckets sum above the study total. The metadata index
+            // is already cached by validateFields above, so this adds no round-trip;
+            // skipped when local validation is disabled (no metadata available).
+            if (this.validateFieldsLocally) {
+                await this.annotateMultiValued(stats, ctx);
+            }
+            return stats;
         }
         catch (err) {
             if (err instanceof McpError && err.code === JsonRpcErrorCode.NotFound) {
@@ -123,6 +132,28 @@ export class ClinicalTrialsService {
             throw err;
         }
     }
+    /**
+     * Mark each stat as multi-valued by checking the metadata node `type` for an
+     * array marker (`[]`, e.g. `Phase[]`, `text[]`) — the durable source of
+     * cardinality. Note: the stat's own `type` (`ENUM`/`STRING`) is the value
+     * domain, not the array marker, so the metadata node type is the only signal.
+     * Reuses the cached field index (no round-trip); fails open silently if the
+     * metadata index is unavailable.
+     */
+    async annotateMultiValued(stats, ctx) {
+        let entries;
+        try {
+            ({ entries } = await this.getFieldIndex(ctx));
+        }
+        catch {
+            return;
+        }
+        const arrayPieces = new Set(entries.filter((e) => e.type?.endsWith('[]')).map((e) => e.piece));
+        for (const stat of stats) {
+            if (arrayPieces.has(stat.piece))
+                stat.multiValued = true;
+        }
+    }
     /**
      * Search the field model by keyword, returning ranked matches with paths and
      * types plus the pre-cap match total for accurate truncation disclosure.
@@ -413,11 +444,13 @@ export class ClinicalTrialsService {
                         throw validationError(`Invalid request format. API response: ${text}`);
                     }
                     // Essie parser errors share the `Error parsing query in <where>: …` prefix.
-                    // Three shapes show up:
+                    // Several shapes show up:
                     //   1. `Unknown area name: \`X\`` — bad field in AREA[X]
                     //   2. `Allowed values for enum field \`<path>\` are \`V1\`, \`V2\`, …` — invalid enum
                     //      value in an AREA[Phase] expression (phaseFilter routes through filter.advanced)
-                    //   3. `no viable alternative at input '… ['` — reserved char in a free-text field
+                    //   3. ANTLR syntax errors from a reserved char or unbalanced parens in a free-text
+                    //      field — `mismatched input 'X'`, `no viable alternative at input 'X'`, or
+                    //      `missing 'X' at …` (the catch-all below; the raw grammar dump is dropped).
                     if (text.startsWith('Error parsing query in')) {
                         const areaMatch = text.match(/Unknown area name:\s*`([^`]+)`/);
                         if (areaMatch) {
@@ -441,7 +474,16 @@ export class ClinicalTrialsService {
                                 validValues,
                             });
                         }
-                        throw validationError(text.trim(), {
+                        // ANTLR catch-all: extract the offending token from whichever shape
+                        // matched and drop the `expecting {…}` grammar dump — the token list is
+                        // noise to a caller, so keep only the offender plus the recovery hint.
+                        const offender = text.match(/mismatched input '(.+?)'/)?.[1] ??
+                            text.match(/no viable alternative at input '(.+?)'/)?.[1] ??
+                            text.match(/missing '(.+?)' at /)?.[1];
+                        const conciseMsg = offender
+                            ? `Query syntax error near '${offender}': '[' and ']' are reserved for advancedFilter AREA[] expressions; an unmatched '(' or ')' also fails. Free-text fields take plain words plus AND, OR, NOT.`
+                            : 'Query syntax error: the upstream parser rejected the query. Free-text fields take plain words plus AND, OR, NOT.';
+                        throw validationError(conciseMsg, {
                             reason: 'query_parse_error',
                             ...ctx.recoveryFor('query_parse_error'),
                         });

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package/dist/services/clinical-trials/types.d.ts CHANGED Viewed

@@ -248,6 +248,13 @@ export interface FieldValueStats {
     falseCount?: number;
     field: string;
     missingStudiesCount: number;
+    /**
+     * Whether the field is multi-valued (array type in the data model, e.g. `Phase`,
+     * `Condition`). A single study can carry several values, so per-value
+     * `studiesCount` buckets sum above the study total. Derived from the metadata
+     * node `type` ending in `[]`; absent when local validation is disabled.
+     */
+    multiValued?: boolean;
     piece: string;
     topValues?: Array<{
         value: string;

package/dist/services/clinical-trials/types.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "clinicaltrialsgov-mcp-server",
-  "version": "2.7.2",
+  "version": "2.7.4",
   "mcpName": "io.github.cyanheads/clinicaltrialsgov-mcp-server",
   "description": "Search ClinicalTrials.gov trials, retrieve study details and results, and match patients to eligible trials via MCP. STDIO or Streamable HTTP.",
   "main": "dist/index.js",
@@ -101,16 +101,16 @@
     "node": ">=24.0.0"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.10.6",
+    "@cyanheads/mcp-ts-core": "^0.10.9",
     "pino-pretty": "^13.1.3",
     "zod": "^4.4.3"
   },
   "devDependencies": {
     "@biomejs/biome": "^2.5.0",
-    "@cloudflare/workers-types": "4.20260613.1",
+    "@cloudflare/workers-types": "4.20260620.1",
     "@types/bun": "^1.3.14",
-    "@types/node": "25.9.3",
-    "@vitest/coverage-istanbul": "^4.1.8",
+    "@types/node": "26.0.0",
+    "@vitest/coverage-istanbul": "^4.1.9",
     "depcheck": "^1.4.7",
     "fast-check": "^4.8.0",
     "husky": "^9.1.7",
@@ -119,7 +119,7 @@
     "typedoc": "^0.28.19",
     "typescript": "^6.0.3",
     "vite": "^8.0.16",
-    "vitest": "^4.1.8"
+    "vitest": "^4.1.9"
   },
   "publishConfig": {
     "access": "public"