clinicaltrialsgov-mcp-server 2.2.0 → 2.3.0

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Files changed (35) hide show
  1. package/README.md +1 -1
  2. package/dist/config/server-config.d.ts.map +1 -1
  3. package/dist/config/server-config.js +5 -4
  4. package/dist/config/server-config.js.map +1 -1
  5. package/dist/mcp-server/resources/definitions/study.resource.d.ts.map +1 -1
  6. package/dist/mcp-server/resources/definitions/study.resource.js +2 -4
  7. package/dist/mcp-server/resources/definitions/study.resource.js.map +1 -1
  8. package/dist/mcp-server/tools/definitions/get-field-values.tool.d.ts.map +1 -1
  9. package/dist/mcp-server/tools/definitions/get-field-values.tool.js +8 -2
  10. package/dist/mcp-server/tools/definitions/get-field-values.tool.js.map +1 -1
  11. package/dist/mcp-server/tools/definitions/get-study-count.tool.js +2 -1
  12. package/dist/mcp-server/tools/definitions/get-study-count.tool.js.map +1 -1
  13. package/dist/mcp-server/tools/definitions/get-study-results.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/get-study-results.tool.js +20 -11
  15. package/dist/mcp-server/tools/definitions/get-study-results.tool.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/get-study.tool.d.ts.map +1 -1
  17. package/dist/mcp-server/tools/definitions/get-study.tool.js +121 -29
  18. package/dist/mcp-server/tools/definitions/get-study.tool.js.map +1 -1
  19. package/dist/mcp-server/tools/definitions/search-studies.tool.d.ts.map +1 -1
  20. package/dist/mcp-server/tools/definitions/search-studies.tool.js +2 -4
  21. package/dist/mcp-server/tools/definitions/search-studies.tool.js.map +1 -1
  22. package/dist/mcp-server/tools/utils/_schemas.d.ts +8 -0
  23. package/dist/mcp-server/tools/utils/_schemas.d.ts.map +1 -0
  24. package/dist/mcp-server/tools/utils/_schemas.js +9 -0
  25. package/dist/mcp-server/tools/utils/_schemas.js.map +1 -0
  26. package/dist/mcp-server/tools/utils/format-helpers.d.ts.map +1 -1
  27. package/dist/mcp-server/tools/utils/format-helpers.js +3 -5
  28. package/dist/mcp-server/tools/utils/format-helpers.js.map +1 -1
  29. package/dist/services/clinical-trials/clinical-trials-service.d.ts +10 -1
  30. package/dist/services/clinical-trials/clinical-trials-service.d.ts.map +1 -1
  31. package/dist/services/clinical-trials/clinical-trials-service.js +25 -5
  32. package/dist/services/clinical-trials/clinical-trials-service.js.map +1 -1
  33. package/dist/services/clinical-trials/types.d.ts +89 -3
  34. package/dist/services/clinical-trials/types.d.ts.map +1 -1
  35. package/package.json +2 -2
package/README.md CHANGED
@@ -10,7 +10,7 @@
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  [![npm](https://img.shields.io/npm/v/clinicaltrialsgov-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/clinicaltrialsgov-mcp-server)
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  [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/clinicaltrialsgov-mcp-server)
13
- [![Version](https://img.shields.io/badge/Version-2.2.0-blue.svg?style=flat-square)](./CHANGELOG.md)
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+ [![Version](https://img.shields.io/badge/Version-2.3.0-blue.svg?style=flat-square)](./CHANGELOG.md)
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  [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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package/dist/config/server-config.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,QAAA,MAAM,kBAAkB;;;;iBAOtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,4DAA4D;AAC5D,wBAAgB,eAAe,IAAI,YAAY,CAO9C"}
1
+ {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAG3C,QAAA,MAAM,kBAAkB;;;;iBAOtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,4DAA4D;AAC5D,wBAAgB,eAAe,IAAI,YAAY,CAO9C"}
package/dist/config/server-config.js CHANGED
@@ -3,6 +3,7 @@
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  * @module config/server-config
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  */
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  import { z } from '@cyanheads/mcp-ts-core';
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+ import { parseEnvConfig } from '@cyanheads/mcp-ts-core/config';
6
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  const ServerConfigSchema = z.object({
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  apiBaseUrl: z
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  .string()
@@ -14,10 +15,10 @@ const ServerConfigSchema = z.object({
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  let _config;
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  /** Get server configuration (lazy-parsed from env vars). */
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  export function getServerConfig() {
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- _config ??= ServerConfigSchema.parse({
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- apiBaseUrl: process.env.CT_API_BASE_URL,
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- requestTimeoutMs: process.env.CT_REQUEST_TIMEOUT_MS,
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- maxPageSize: process.env.CT_MAX_PAGE_SIZE,
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+ _config ??= parseEnvConfig(ServerConfigSchema, {
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+ apiBaseUrl: 'CT_API_BASE_URL',
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+ requestTimeoutMs: 'CT_REQUEST_TIMEOUT_MS',
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+ maxPageSize: 'CT_MAX_PAGE_SIZE',
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  });
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  return _config;
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  }
package/dist/config/server-config.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,UAAU,EAAE,CAAC;SACV,MAAM,EAAE;SACR,OAAO,CAAC,mCAAmC,CAAC;SAC5C,QAAQ,CAAC,iCAAiC,CAAC;IAC9C,gBAAgB,EAAE,CAAC,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,2BAA2B,CAAC;IACzF,WAAW,EAAE,CAAC,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,uBAAuB,CAAC;CAC9E,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,4DAA4D;AAC5D,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,kBAAkB,CAAC,KAAK,CAAC;QACnC,UAAU,EAAE,OAAO,CAAC,GAAG,CAAC,eAAe;QACvC,gBAAgB,EAAE,OAAO,CAAC,GAAG,CAAC,qBAAqB;QACnD,WAAW,EAAE,OAAO,CAAC,GAAG,CAAC,gBAAgB;KAC1C,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
1
+ {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC3C,OAAO,EAAE,cAAc,EAAE,MAAM,+BAA+B,CAAC;AAE/D,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,UAAU,EAAE,CAAC;SACV,MAAM,EAAE;SACR,OAAO,CAAC,mCAAmC,CAAC;SAC5C,QAAQ,CAAC,iCAAiC,CAAC;IAC9C,gBAAgB,EAAE,CAAC,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,2BAA2B,CAAC;IACzF,WAAW,EAAE,CAAC,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,uBAAuB,CAAC;CAC9E,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,4DAA4D;AAC5D,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,cAAc,CAAC,kBAAkB,EAAE;QAC7C,UAAU,EAAE,iBAAiB;QAC7B,gBAAgB,EAAE,uBAAuB;QACzC,WAAW,EAAE,kBAAkB;KAChC,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
package/dist/mcp-server/resources/definitions/study.resource.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"study.resource.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/resources/definitions/study.resource.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAY,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGrD,eAAO,MAAM,aAAa;;6BAiBxB,CAAC"}
1
+ {"version":3,"file":"study.resource.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/resources/definitions/study.resource.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAY,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAIrD,eAAO,MAAM,aAAa;;6BAcxB,CAAC"}
package/dist/mcp-server/resources/definitions/study.resource.js CHANGED
@@ -4,15 +4,13 @@
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  */
5
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  import { resource, z } from '@cyanheads/mcp-ts-core';
6
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  import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
7
+ import { nctIdSchema } from '../../tools/utils/_schemas.js';
7
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  export const studyResource = resource('clinicaltrials://{nctId}', {
8
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  name: 'Clinical Trial Study',
9
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  description: 'Fetch a single clinical study by NCT ID. Returns full study data as JSON.',
10
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  mimeType: 'application/json',
11
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  params: z.object({
12
- nctId: z
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- .string()
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- .regex(/^NCT\d{8}$/)
15
- .describe('NCT identifier (e.g., NCT03722472).'),
13
+ nctId: nctIdSchema.describe('NCT identifier (e.g., NCT03722472).'),
16
14
  }),
17
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  async handler(params, ctx) {
18
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  const service = getClinicalTrialsService();
package/dist/mcp-server/resources/definitions/study.resource.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"study.resource.js","sourceRoot":"","sources":["../../../../src/mcp-server/resources/definitions/study.resource.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,QAAQ,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,EAAE,wBAAwB,EAAE,MAAM,uDAAuD,CAAC;AAEjG,MAAM,CAAC,MAAM,aAAa,GAAG,QAAQ,CAAC,0BAA0B,EAAE;IAChE,IAAI,EAAE,sBAAsB;IAC5B,WAAW,EAAE,2EAA2E;IACxF,QAAQ,EAAE,kBAAkB;IAC5B,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,KAAK,CAAC,YAAY,CAAC;aACnB,QAAQ,CAAC,qCAAqC,CAAC;KACnD,CAAC;IAEF,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG;QACvB,MAAM,OAAO,GAAG,wBAAwB,EAAE,CAAC;QAC3C,MAAM,KAAK,GAAG,MAAM,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;QACxD,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,eAAe,EAAE,EAAE,KAAK,EAAE,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC;QACvD,OAAO,KAAK,CAAC;IACf,CAAC;CACF,CAAC,CAAC"}
1
+ {"version":3,"file":"study.resource.js","sourceRoot":"","sources":["../../../../src/mcp-server/resources/definitions/study.resource.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,QAAQ,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,EAAE,wBAAwB,EAAE,MAAM,uDAAuD,CAAC;AACjG,OAAO,EAAE,WAAW,EAAE,MAAM,+BAA+B,CAAC;AAE5D,MAAM,CAAC,MAAM,aAAa,GAAG,QAAQ,CAAC,0BAA0B,EAAE;IAChE,IAAI,EAAE,sBAAsB;IAC5B,WAAW,EAAE,2EAA2E;IACxF,QAAQ,EAAE,kBAAkB;IAC5B,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,KAAK,EAAE,WAAW,CAAC,QAAQ,CAAC,qCAAqC,CAAC;KACnE,CAAC;IAEF,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG;QACvB,MAAM,OAAO,GAAG,wBAAwB,EAAE,CAAC;QAC3C,MAAM,KAAK,GAAG,MAAM,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;QACxD,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,eAAe,EAAE,EAAE,KAAK,EAAE,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC;QACvD,OAAO,KAAK,CAAC;IACf,CAAC;CACF,CAAC,CAAC"}
package/dist/mcp-server/tools/definitions/get-field-values.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"get-field-values.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-field-values.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;kBAgFzB,CAAC"}
1
+ {"version":3,"file":"get-field-values.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-field-values.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;kBAqFzB,CAAC"}
package/dist/mcp-server/tools/definitions/get-field-values.tool.js CHANGED
@@ -66,8 +66,14 @@ export const getFieldValues = tool('clinicaltrials_get_field_values', {
66
66
  }
67
67
  else {
68
68
  lines.push(`**${stat.piece}** (${stat.uniqueValuesCount ?? '?'} unique values):`);
69
- for (const tv of (stat.topValues ?? []).slice(0, 15)) {
70
- lines.push(` ${tv.value}: ${tv.studiesCount.toLocaleString()} studies`);
69
+ const topValues = stat.topValues ?? [];
70
+ if (topValues.length === 0) {
71
+ lines.push(' No recorded values for this field.');
72
+ }
73
+ else {
74
+ for (const tv of topValues.slice(0, 15)) {
75
+ lines.push(` ${tv.value}: ${tv.studiesCount.toLocaleString()} studies`);
76
+ }
71
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  }
72
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  }
73
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  if (stat.missingStudiesCount != null && stat.missingStudiesCount > 0)
package/dist/mcp-server/tools/definitions/get-field-values.tool.js.map CHANGED
@@ -1 +1 @@
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1
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package/dist/mcp-server/tools/definitions/get-study-count.tool.js CHANGED
@@ -89,7 +89,8 @@ export const getStudyCount = tool('clinicaltrials_get_study_count', {
89
89
  const parts = Object.entries(result.searchCriteria).map(([k, v]) => `${k}=${v}`);
90
90
  lines.push(`Criteria: ${parts.join(', ')}`);
91
91
  }
92
- lines.push('Try broader search terms or fewer filters.');
92
+ for (const hint of result.noMatchHints ?? [])
93
+ lines.push(hint);
93
94
  return [{ type: 'text', text: lines.join('\n') }];
94
95
  }
95
96
  return [{ type: 'text', text: `${result.totalCount} studies match the specified criteria.` }];
package/dist/mcp-server/tools/definitions/get-study-count.tool.js.map CHANGED
@@ -1 +1 @@
1
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+ {"version":3,"file":"get-study-count.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study-count.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,wBAAwB,EAAE,MAAM,uDAAuD,CAAC;AACjG,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,2BAA2B,CAAC;AAEzE,MAAM,CAAC,MAAM,aAAa,GAAG,IAAI,CAAC,gCAAgC,EAAE;IAClE,WAAW,EAAE,oRAAoR;IACjS,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IAED,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6CAA6C,CAAC;QACpF,cAAc,EAAE,CAAC;aACd,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,2FAA2F,CAC5F;QACH,iBAAiB,EAAE,CAAC;aACjB,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,uFAAuF,CACxF;QACH,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,mCAAmC,CAAC;QACjF,YAAY,EAAE,CAAC;aACZ,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;aACxC,QAAQ,EAAE;aACV,QAAQ,CACP,oQAAoQ,CACrQ;QACH,WAAW,EAAE,CAAC;aACX,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;aACxC,QAAQ,EAAE;aACV,QAAQ,CAAC,kFAAkF,CAAC;QAC/F,cAAc,EAAE,CAAC;aACd,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,qKAAqK,CACtK;KACJ,CAAC;IAEF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,2CAA2C,CAAC;QAC5E,cAAc,EAAE,CAAC;aACd,MAAM,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC;aAC/B,QAAQ,EAAE;aACV,QAAQ,CAAC,qCAAqC,CAAC;QAClD,YAAY,EAAE,CAAC;aACZ,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;aACjB,QAAQ,EAAE;aACV,QAAQ,CAAC,sDAAsD,CAAC;KACpE,CAAC;IAEF,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,OAAO,GAAG,wBAAwB,EAAE,CAAC;QAC3C,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,aAAa,CACxC;YACE,SAAS,EAAE,KAAK,CAAC,KAAK;YACtB,SAAS,EAAE,KAAK,CAAC,cAAc;YAC/B,SAAS,EAAE,KAAK,CAAC,iBAAiB;YAClC,UAAU,EAAE,KAAK,CAAC,YAAY;YAC9B,mBAAmB,EAAE,OAAO,CAAC,KAAK,CAAC,YAAY,CAAC;YAChD,cAAc,EAAE,mBAAmB,CAAC,OAAO,CAAC,KAAK,CAAC,WAAW,CAAC,EAAE,KAAK,CAAC,cAAc,CAAC;YACrF,UAAU,EAAE,IAAI;YAChB,QAAQ,EAAE,CAAC;SACZ,EACD,GAAG,CACJ,CAAC;QACF,MAAM,UAAU,GAAG,MAAM,CAAC,UAAU,IAAI,CAAC,CAAC;QAC1C,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,iBAAiB,EAAE,EAAE,UAAU,EAAE,CAAC,CAAC;QAEhD,MAAM,QAAQ,GAA4B,EAAE,CAAC;QAC7C,IAAI,KAAK,CAAC,KAAK;YAAE,QAAQ,CAAC,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC;QAC9C,IAAI,KAAK,CAAC,cAAc;YAAE,QAAQ,CAAC,cAAc,GAAG,KAAK,CAAC,cAAc,CAAC;QACzE,IAAI,KAAK,CAAC,iBAAiB;YAAE,QAAQ,CAAC,iBAAiB,GAAG,KAAK,CAAC,iBAAiB,CAAC;QAClF,IAAI,KAAK,CAAC,YAAY;YAAE,QAAQ,CAAC,YAAY,GAAG,KAAK,CAAC,YAAY,CAAC;QACnE,IAAI,KAAK,CAAC,YAAY;YAAE,QAAQ,CAAC,YAAY,GAAG,KAAK,CAAC,YAAY,CAAC;QACnE,IAAI,KAAK,CAAC,WAAW;YAAE,QAAQ,CAAC,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC;QAChE,IAAI,KAAK,CAAC,cAAc;YAAE,QAAQ,CAAC,cAAc,GAAG,KAAK,CAAC,cAAc,CAAC;QAEzE,OAAO;YACL,UAAU;YACV,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,cAAc,EAAE,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACzE,GAAG,CAAC,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,YAAY,EAAE,CAAC,4CAA4C,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;SAC9F,CAAC;IACJ,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,IAAI,MAAM,CAAC,UAAU,KAAK,CAAC,EAAE,CAAC;YAC5B,MAAM,KAAK,GAAG,CAAC,yCAAyC,CAAC,CAAC;YAC1D,IAAI,MAAM,CAAC,cAAc,IAAI,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBAC3E,MAAM,KAAK,GAAG,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBACjF,KAAK,CAAC,IAAI,CAAC,aAAa,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YAC9C,CAAC;YACD,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,YAAY,IAAI,EAAE;gBAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAC/D,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACpD,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,CAAC,UAAU,wCAAwC,EAAE,CAAC,CAAC;IAChG,CAAC;CACF,CAAC,CAAC"}
package/dist/mcp-server/tools/definitions/get-study-results.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"get-study-results.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study-results.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA0SjD,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBA6L1B,CAAC"}
1
+ {"version":3,"file":"get-study-results.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study-results.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA2SjD,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAgM1B,CAAC"}
package/dist/mcp-server/tools/definitions/get-study-results.tool.js CHANGED
@@ -4,6 +4,7 @@
4
4
  */
5
5
  import { tool, z } from '@cyanheads/mcp-ts-core';
6
6
  import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
7
+ import { nctIdSchema } from '../utils/_schemas.js';
7
8
  const VALID_SECTIONS = ['outcomes', 'adverseEvents', 'participantFlow', 'baseline'];
8
9
  /** Map section names to resultsSection module keys. */
9
10
  const SECTION_MAP = {
@@ -281,13 +282,7 @@ export const getStudyResults = tool('clinicaltrials_get_study_results', {
281
282
  },
282
283
  input: z.object({
283
284
  nctIds: z
284
- .union([
285
- z.string().regex(/^NCT\d{8}$/, 'NCT IDs must match format NCTxxxxxxxx (8 digits).'),
286
- z
287
- .array(z.string().regex(/^NCT\d{8}$/, 'NCT IDs must match format NCTxxxxxxxx (8 digits).'))
288
- .min(1)
289
- .max(20),
290
- ])
285
+ .union([nctIdSchema, z.array(nctIdSchema).min(1).max(20)])
291
286
  .describe('One or more NCT IDs (max 20). E.g., "NCT12345678" or ["NCT12345678", "NCT87654321"]. Use summary=true for large batches to avoid large payloads.'),
292
287
  sections: z
293
288
  .union([z.enum(VALID_SECTIONS), z.array(z.enum(VALID_SECTIONS))])
@@ -345,7 +340,24 @@ export const getStudyResults = tool('clinicaltrials_get_study_results', {
345
340
  const results = [];
346
341
  const studiesWithoutResults = [];
347
342
  const fetchErrors = [];
348
- const fetched = (await service.getStudiesBatch(nctIds, ctx));
343
+ let fetched;
344
+ try {
345
+ fetched = (await service.getStudiesBatch(nctIds, ctx));
346
+ }
347
+ catch (err) {
348
+ // Batch-wide failure (e.g., all IDs rejected by the API). Surface a
349
+ // structured result with per-ID fetchErrors instead of escaping, so
350
+ // callers get the same shape as the partial-failure path.
351
+ const message = err instanceof Error ? err.message : String(err);
352
+ ctx.log.warning('Batch fetch failed; returning fetchErrors', {
353
+ count: nctIds.length,
354
+ error: message,
355
+ });
356
+ return {
357
+ results: [],
358
+ fetchErrors: nctIds.map((nctId) => ({ nctId, error: message })),
359
+ };
360
+ }
349
361
  const studyMap = new Map(fetched
350
362
  .map((s) => [s.protocolSection?.identificationModule?.nctId, s])
351
363
  .filter((e) => e[0] != null));
@@ -387,9 +399,6 @@ export const getStudyResults = tool('clinicaltrials_get_study_results', {
387
399
  }
388
400
  results.push(entry);
389
401
  }
390
- if (results.length === 0 && fetchErrors.length > 0) {
391
- throw new Error(`All studies failed to fetch: ${fetchErrors.map((e) => `${e.nctId}: ${e.error}`).join('; ')}`);
392
- }
393
402
  ctx.log.info('Results extracted', {
394
403
  resultCount: results.length,
395
404
  withoutResults: studiesWithoutResults.length,
package/dist/mcp-server/tools/definitions/get-study-results.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/get-study.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAIjD,eAAO,MAAM,QAAQ;;;;kBAuKnB,CAAC"}
1
+ {"version":3,"file":"get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAKjD,eAAO,MAAM,QAAQ;;;;kBAiQnB,CAAC"}
package/dist/mcp-server/tools/definitions/get-study.tool.js CHANGED
@@ -5,6 +5,7 @@
5
5
  */
6
6
  import { tool, z } from '@cyanheads/mcp-ts-core';
7
7
  import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
8
+ import { nctIdSchema } from '../utils/_schemas.js';
8
9
  export const getStudy = tool('clinicaltrials_get_study_record', {
9
10
  description: 'Fetch a single clinical study by NCT ID. Returns the full study record including protocol details, eligibility criteria, outcomes, arms, interventions, contacts, and locations.',
10
11
  annotations: {
@@ -13,10 +14,7 @@ export const getStudy = tool('clinicaltrials_get_study_record', {
13
14
  openWorldHint: true,
14
15
  },
15
16
  input: z.object({
16
- nctId: z
17
- .string()
18
- .regex(/^NCT\d{8}$/)
19
- .describe('NCT identifier (e.g., NCT03722472).'),
17
+ nctId: nctIdSchema.describe('NCT identifier (e.g., NCT03722472).'),
20
18
  }),
21
19
  output: z.object({
22
20
  study: z.record(z.string(), z.unknown()).describe('Full study record.'),
@@ -40,6 +38,9 @@ export const getStudy = tool('clinicaltrials_get_study_record', {
40
38
  const outcomes = ps.outcomesModule ?? {};
41
39
  const elig = ps.eligibilityModule ?? {};
42
40
  const contacts = ps.contactsLocationsModule ?? {};
41
+ const oversight = ps.oversightModule ?? {};
42
+ const ipd = ps.ipdSharingStatementModule ?? {};
43
+ const references = ps.referencesModule ?? {};
43
44
  const lines = [];
44
45
  // Header
45
46
  const nctId = id.nctId ?? 'Unknown';
@@ -47,6 +48,21 @@ export const getStudy = tool('clinicaltrials_get_study_record', {
47
48
  lines.push(`# ${nctId}: ${title}`);
48
49
  if (id.acronym)
49
50
  lines.push(`**Acronym:** ${id.acronym}`);
51
+ // Only surface officialTitle when briefTitle is the primary — otherwise
52
+ // the header already shows officialTitle and duplicating would be noise.
53
+ if (id.briefTitle && id.officialTitle && id.officialTitle !== id.briefTitle)
54
+ lines.push(`**Official Title:** ${id.officialTitle}`);
55
+ if (id.orgStudyIdInfo?.id)
56
+ lines.push(`**Org Study ID:** ${id.orgStudyIdInfo.id}`);
57
+ if (id.organization?.fullName)
58
+ lines.push(`**Organization:** ${id.organization.fullName}`);
59
+ if (id.secondaryIdInfos?.length) {
60
+ const parts = id.secondaryIdInfos
61
+ .map((s2) => (s2.type ? `${s2.type}: ${s2.id}` : s2.id))
62
+ .filter(Boolean);
63
+ if (parts.length)
64
+ lines.push(`**Secondary IDs:** ${parts.join(', ')}`);
65
+ }
50
66
  // Status / Design
51
67
  const statusParts = [
52
68
  status.overallStatus,
@@ -56,33 +72,81 @@ export const getStudy = tool('clinicaltrials_get_study_record', {
56
72
  ].filter((v) => v != null);
57
73
  if (statusParts.length)
58
74
  lines.push(`**Status:** ${statusParts.join(' | ')}`);
75
+ // Design details
76
+ const di = design.designInfo;
77
+ if (di) {
78
+ const designParts = [
79
+ di.allocation && `Allocation: ${di.allocation}`,
80
+ di.interventionModel && `Model: ${di.interventionModel}`,
81
+ di.primaryPurpose && `Purpose: ${di.primaryPurpose}`,
82
+ di.maskingInfo?.masking && `Masking: ${di.maskingInfo.masking}`,
83
+ ].filter(Boolean);
84
+ if (designParts.length)
85
+ lines.push(`**Design:** ${designParts.join(' | ')}`);
86
+ }
59
87
  // Dates
60
- const startDate = status.startDateStruct?.date;
61
- const primaryCompletion = status.primaryCompletionDateStruct?.date;
62
- const completion = status.completionDateStruct?.date;
63
88
  const dateParts = [];
64
- if (startDate)
65
- dateParts.push(`Start: ${startDate}`);
66
- if (primaryCompletion)
67
- dateParts.push(`Primary Completion: ${primaryCompletion}`);
68
- if (completion)
69
- dateParts.push(`Completion: ${completion}`);
89
+ if (status.startDateStruct?.date)
90
+ dateParts.push(`Start: ${status.startDateStruct.date}`);
91
+ if (status.primaryCompletionDateStruct?.date)
92
+ dateParts.push(`Primary Completion: ${status.primaryCompletionDateStruct.date}`);
93
+ if (status.completionDateStruct?.date)
94
+ dateParts.push(`Completion: ${status.completionDateStruct.date}`);
70
95
  if (dateParts.length)
71
96
  lines.push(`**Dates:** ${dateParts.join(' | ')}`);
72
- // Sponsor
97
+ // Submission / update dates
98
+ const submissionParts = [];
99
+ if (status.studyFirstSubmitDate)
100
+ submissionParts.push(`First Submit: ${status.studyFirstSubmitDate}`);
101
+ if (status.studyFirstPostDateStruct?.date)
102
+ submissionParts.push(`First Post: ${status.studyFirstPostDateStruct.date}`);
103
+ if (status.lastUpdateSubmitDate)
104
+ submissionParts.push(`Last Update Submit: ${status.lastUpdateSubmitDate}`);
105
+ if (status.lastUpdatePostDateStruct?.date)
106
+ submissionParts.push(`Last Update Post: ${status.lastUpdatePostDateStruct.date}`);
107
+ if (status.statusVerifiedDate)
108
+ submissionParts.push(`Verified: ${status.statusVerifiedDate}`);
109
+ if (submissionParts.length)
110
+ lines.push(`**Submission:** ${submissionParts.join(' | ')}`);
111
+ // Sponsor + collaborators
73
112
  if (sponsor.leadSponsor?.name) {
74
113
  const cls = sponsor.leadSponsor.class ? ` (${sponsor.leadSponsor.class})` : '';
75
114
  lines.push(`**Sponsor:** ${sponsor.leadSponsor.name}${cls}`);
76
115
  }
77
- // Conditions
116
+ if (sponsor.collaborators?.length) {
117
+ const parts = sponsor.collaborators
118
+ .map((c) => (c.class ? `${c.name} (${c.class})` : c.name))
119
+ .filter(Boolean);
120
+ if (parts.length)
121
+ lines.push(`**Collaborators:** ${parts.join(', ')}`);
122
+ }
123
+ // Conditions + keywords
78
124
  if (cond.conditions?.length)
79
125
  lines.push(`**Conditions:** ${cond.conditions.join(', ')}`);
126
+ if (cond.keywords?.length)
127
+ lines.push(`**Keywords:** ${cond.keywords.join(', ')}`);
128
+ // Oversight
129
+ const oversightParts = [];
130
+ if (oversight.oversightHasDmc != null)
131
+ oversightParts.push(`DMC: ${oversight.oversightHasDmc ? 'Yes' : 'No'}`);
132
+ if (oversight.isFdaRegulatedDrug != null)
133
+ oversightParts.push(`FDA-Regulated Drug: ${oversight.isFdaRegulatedDrug ? 'Yes' : 'No'}`);
134
+ if (oversight.isFdaRegulatedDevice != null)
135
+ oversightParts.push(`FDA-Regulated Device: ${oversight.isFdaRegulatedDevice ? 'Yes' : 'No'}`);
136
+ if (oversightParts.length)
137
+ lines.push(`**Oversight:** ${oversightParts.join(' | ')}`);
80
138
  // Brief summary
81
139
  if (desc.briefSummary) {
82
140
  lines.push('');
83
141
  lines.push('## Summary');
84
142
  lines.push(desc.briefSummary.trim());
85
143
  }
144
+ // Detailed description
145
+ if (desc.detailedDescription) {
146
+ lines.push('');
147
+ lines.push('## Detailed Description');
148
+ lines.push(desc.detailedDescription.trim());
149
+ }
86
150
  // Eligibility
87
151
  lines.push('');
88
152
  lines.push('## Eligibility');
@@ -122,24 +186,24 @@ export const getStudy = tool('clinicaltrials_get_study_record', {
122
186
  lines.push(`- **${arm.label}** (${arm.type ?? 'unknown'})${desc2}`);
123
187
  }
124
188
  }
125
- // Primary outcomes
126
- if (outcomes.primaryOutcomes?.length) {
127
- lines.push('');
128
- lines.push('## Primary Outcomes');
129
- for (const o of outcomes.primaryOutcomes) {
130
- lines.push(`- ${o.measure}${o.timeFrame ? ` [${o.timeFrame}]` : ''}`);
131
- }
132
- }
133
- if (outcomes.secondaryOutcomes?.length) {
189
+ // Outcomes
190
+ const renderOutcomeList = (heading, list, limit) => {
134
191
  lines.push('');
135
- lines.push('## Secondary Outcomes');
136
- const shown = outcomes.secondaryOutcomes.slice(0, 5);
192
+ lines.push(`## ${heading}`);
193
+ const shown = limit != null ? list.slice(0, limit) : list;
137
194
  for (const o of shown) {
138
195
  lines.push(`- ${o.measure}${o.timeFrame ? ` [${o.timeFrame}]` : ''}`);
139
196
  }
140
- if (outcomes.secondaryOutcomes.length > 5)
141
- lines.push(`... and ${outcomes.secondaryOutcomes.length - 5} more`);
142
- }
197
+ if (limit != null && list.length > limit) {
198
+ lines.push(`... and ${list.length - limit} more`);
199
+ }
200
+ };
201
+ if (outcomes.primaryOutcomes?.length)
202
+ renderOutcomeList('Primary Outcomes', outcomes.primaryOutcomes);
203
+ if (outcomes.secondaryOutcomes?.length)
204
+ renderOutcomeList('Secondary Outcomes', outcomes.secondaryOutcomes, 5);
205
+ if (outcomes.otherOutcomes?.length)
206
+ renderOutcomeList('Other Outcomes', outcomes.otherOutcomes, 5);
143
207
  // Central contacts
144
208
  if (contacts.centralContacts?.length) {
145
209
  lines.push('');
@@ -164,6 +228,34 @@ export const getStudy = tool('clinicaltrials_get_study_record', {
164
228
  if (locs.length > 10)
165
229
  lines.push(`... and ${locs.length - 10} more`);
166
230
  }
231
+ // IPD sharing
232
+ if (ipd.ipdSharing || ipd.description || ipd.timeFrame) {
233
+ lines.push('');
234
+ lines.push('## IPD Sharing');
235
+ if (ipd.ipdSharing)
236
+ lines.push(`**Plan:** ${ipd.ipdSharing}`);
237
+ if (ipd.timeFrame)
238
+ lines.push(`**Time Frame:** ${ipd.timeFrame}`);
239
+ if (ipd.description)
240
+ lines.push(ipd.description.trim());
241
+ }
242
+ // References
243
+ if (references.references?.length || references.seeAlsoLinks?.length) {
244
+ lines.push('');
245
+ lines.push('## References');
246
+ const refs = references.references ?? [];
247
+ const shown = refs.slice(0, 10);
248
+ for (const r of shown) {
249
+ const pmid = r.pmid ? ` (PMID: ${r.pmid})` : '';
250
+ const type = r.type ? ` [${r.type}]` : '';
251
+ lines.push(`- ${r.citation ?? 'Citation unavailable'}${pmid}${type}`);
252
+ }
253
+ if (refs.length > 10)
254
+ lines.push(`... and ${refs.length - 10} more`);
255
+ for (const link of references.seeAlsoLinks ?? []) {
256
+ lines.push(`- See also: ${link.label ?? link.url}${link.url ? ` — ${link.url}` : ''}`);
257
+ }
258
+ }
167
259
  return [{ type: 'text', text: lines.join('\n') }];
168
260
  },
169
261
  });
package/dist/mcp-server/tools/definitions/get-study.tool.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/mcp-server/tools/definitions/search-studies.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"search-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-studies.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAoBjD,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;kBA+NxB,CAAC"}
1
+ {"version":3,"file":"search-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-studies.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAqBjD,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;kBA0NxB,CAAC"}
package/dist/mcp-server/tools/definitions/search-studies.tool.js CHANGED
@@ -5,6 +5,7 @@
5
5
  import { tool, z } from '@cyanheads/mcp-ts-core';
6
6
  import { getServerConfig } from '../../../config/server-config.js';
7
7
  import { getClinicalTrialsService } from '../../../services/clinical-trials/clinical-trials-service.js';
8
+ import { nctIdSchema } from '../utils/_schemas.js';
8
9
  import { formatRemainingStudyFields } from '../utils/format-helpers.js';
9
10
  import { buildAdvancedFilter, toArray } from '../utils/query-helpers.js';
10
11
  const { maxPageSize } = getServerConfig();
@@ -59,10 +60,7 @@ export const searchStudies = tool('clinicaltrials_search_studies', {
59
60
  .optional()
60
61
  .describe(`Geographic proximity filter. Format: distance(lat,lon,radius). E.g., "distance(47.6062,-122.3321,50mi)" for studies within 50 miles of Seattle.`),
61
62
  nctIds: z
62
- .union([
63
- z.string().regex(/^NCT\d{8}$/, 'NCT IDs must match format NCTxxxxxxxx (8 digits).'),
64
- z.array(z.string().regex(/^NCT\d{8}$/, 'NCT IDs must match format NCTxxxxxxxx (8 digits).')),
65
- ])
63
+ .union([nctIdSchema, z.array(nctIdSchema)])
66
64
  .optional()
67
65
  .describe('Filter to specific NCT IDs for batch lookups.'),
68
66
  fields: z
package/dist/mcp-server/tools/definitions/search-studies.tool.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/mcp-server/tools/utils/_schemas.d.ts ADDED
@@ -0,0 +1,8 @@
1
+ /**
2
+ * @fileoverview Shared Zod schemas used across tool inputs and resource params.
3
+ * @module mcp-server/tools/utils/_schemas
4
+ */
5
+ import { z } from '@cyanheads/mcp-ts-core';
6
+ /** Canonical NCT identifier schema, e.g. NCT03722472. */
7
+ export declare const nctIdSchema: z.ZodString;
8
+ //# sourceMappingURL=_schemas.d.ts.map
package/dist/mcp-server/tools/utils/_schemas.d.ts.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"_schemas.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/utils/_schemas.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAI3C,yDAAyD;AACzD,eAAO,MAAM,WAAW,aAAiD,CAAC"}
package/dist/mcp-server/tools/utils/_schemas.js ADDED
@@ -0,0 +1,9 @@
1
+ /**
2
+ * @fileoverview Shared Zod schemas used across tool inputs and resource params.
3
+ * @module mcp-server/tools/utils/_schemas
4
+ */
5
+ import { z } from '@cyanheads/mcp-ts-core';
6
+ const NCT_ID_MESSAGE = 'NCT IDs must match format NCTxxxxxxxx (8 digits).';
7
+ /** Canonical NCT identifier schema, e.g. NCT03722472. */
8
+ export const nctIdSchema = z.string().regex(/^NCT\d{8}$/, NCT_ID_MESSAGE);
9
+ //# sourceMappingURL=_schemas.js.map
package/dist/mcp-server/tools/utils/_schemas.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"_schemas.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/utils/_schemas.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,MAAM,cAAc,GAAG,mDAAmD,CAAC;AAE3E,yDAAyD;AACzD,MAAM,CAAC,MAAM,WAAW,GAAG,CAAC,CAAC,MAAM,EAAE,CAAC,KAAK,CAAC,YAAY,EAAE,cAAc,CAAC,CAAC"}
package/dist/mcp-server/tools/utils/format-helpers.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"format-helpers.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/utils/format-helpers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAqEH;;;;;;GAMG;AACH,wBAAgB,0BAA0B,CACxC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC9B,gBAAgB,EAAE,WAAW,CAAC,MAAM,CAAC,EACrC,EAAE,QAAY,EAAE,WAAiB,EAAE;;;CAAK,GACvC,MAAM,EAAE,CAuBV"}
1
+ {"version":3,"file":"format-helpers.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/utils/format-helpers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAmEH;;;;;;GAMG;AACH,wBAAgB,0BAA0B,CACxC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC9B,gBAAgB,EAAE,WAAW,CAAC,MAAM,CAAC,EACrC,EAAE,QAAY,EAAE,WAAiB,EAAE;;;CAAK,GACvC,MAAM,EAAE,CAuBV"}
package/dist/mcp-server/tools/utils/format-helpers.js CHANGED
@@ -37,13 +37,11 @@ function collectLeaves(obj, segments, out) {
37
37
  out.push({ segments, value: obj.join(', ') });
38
38
  return;
39
39
  }
40
- const limit = Math.min(obj.length, 3);
41
- for (let i = 0; i < limit; i++) {
40
+ // No per-array cap — the outer `maxLines` budget in formatRemainingStudyFields
41
+ // already bounds total output. Capping here silently hid data from callers.
42
+ for (let i = 0; i < obj.length; i++) {
42
43
  collectLeaves(obj[i], [...segments, `[${i}]`], out);
43
44
  }
44
- if (obj.length > limit) {
45
- out.push({ segments: [...segments, '[…]'], value: `+${obj.length - limit} more` });
46
- }
47
45
  return;
48
46
  }
49
47
  if (typeof obj === 'object') {
package/dist/mcp-server/tools/utils/format-helpers.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/services/clinical-trials/clinical-trials-service.d.ts CHANGED
@@ -5,12 +5,21 @@
5
5
  import type { Context } from '@cyanheads/mcp-ts-core';
6
6
  import { type ServerConfig } from '../../config/server-config.js';
7
7
  import type { FieldNode, FieldValueStats, PagedStudiesResponse, SearchParams, Study } from './types.js';
8
+ /** Constructor options for overriding retry/backoff behavior (primarily for tests). */
9
+ export interface ClinicalTrialsServiceOptions {
10
+ baseBackoffMs?: number;
11
+ maxBackoffMs?: number;
12
+ maxRetries?: number;
13
+ }
8
14
  export declare class ClinicalTrialsService {
9
15
  private readonly baseUrl;
10
16
  private readonly timeoutMs;
11
17
  private readonly maxPageSize;
18
+ private readonly maxRetries;
19
+ private readonly baseBackoffMs;
20
+ private readonly maxBackoffMs;
12
21
  private lastRequestAt;
13
- constructor(config: ServerConfig);
22
+ constructor(config: ServerConfig, options?: ClinicalTrialsServiceOptions);
14
23
  /** Search studies with query, filters, pagination, and field selection. */
15
24
  searchStudies(params: SearchParams, ctx: Context): Promise<PagedStudiesResponse>;
16
25
  /** Fetch a single study by NCT ID. */
package/dist/services/clinical-trials/clinical-trials-service.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"clinical-trials-service.d.ts","sourceRoot":"","sources":["../../../src/services/clinical-trials/clinical-trials-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAQtD,OAAO,EAAmB,KAAK,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAC/E,OAAO,KAAK,EACV,SAAS,EACT,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,KAAK,EACN,MAAM,YAAY,CAAC;AAMpB,qBAAa,qBAAqB;IAChC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;IACnC,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,aAAa,CAAK;gBAEd,MAAM,EAAE,YAAY;IAMhC,2EAA2E;IAC3E,aAAa,CAAC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,oBAAoB,CAAC;IAMhF,sCAAsC;IACtC,QAAQ,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,KAAK,CAAC;IAKrD,8GAA8G;IACxG,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC;IAavE,iEAAiE;IACjE,WAAW,CAAC,kBAAkB,EAAE,OAAO,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IAO5E,2DAA2D;IACrD,cAAc,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC;IAuBhF,OAAO,CAAC,gBAAgB;YAuBV,QAAQ;YAMR,SAAS;CA+GxB;AAQD,0EAA0E;AAC1E,wBAAgB,yBAAyB,IAAI,IAAI,CAEhD;AAED,2DAA2D;AAC3D,wBAAgB,wBAAwB,IAAI,qBAAqB,CAMhE"}
1
+ {"version":3,"file":"clinical-trials-service.d.ts","sourceRoot":"","sources":["../../../src/services/clinical-trials/clinical-trials-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAQtD,OAAO,EAAmB,KAAK,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAC/E,OAAO,KAAK,EACV,SAAS,EACT,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,KAAK,EACN,MAAM,YAAY,CAAC;AAQpB,uFAAuF;AACvF,MAAM,WAAW,4BAA4B;IAC3C,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,qBAAa,qBAAqB;IAChC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;IACnC,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAS;IACpC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;IACtC,OAAO,CAAC,aAAa,CAAK;gBAEd,MAAM,EAAE,YAAY,EAAE,OAAO,GAAE,4BAAiC;IAS5E,2EAA2E;IAC3E,aAAa,CAAC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,oBAAoB,CAAC;IAMhF,sCAAsC;IACtC,QAAQ,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,KAAK,CAAC;IAKrD,8GAA8G;IACxG,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC;IAavE,iEAAiE;IACjE,WAAW,CAAC,kBAAkB,EAAE,OAAO,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IAO5E,2DAA2D;IACrD,cAAc,CAAC,MAAM,EAAE,MAAM,EAAE,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC;IAuBhF,OAAO,CAAC,gBAAgB;YAuBV,QAAQ;YAMR,SAAS;CA+HxB;AAQD,0EAA0E;AAC1E,wBAAgB,yBAAyB,IAAI,IAAI,CAEhD;AAED,2DAA2D;AAC3D,wBAAgB,wBAAwB,IAAI,qBAAqB,CAMhE"}
package/dist/services/clinical-trials/clinical-trials-service.js CHANGED
@@ -4,18 +4,26 @@
4
4
  */
5
5
  import { JsonRpcErrorCode, McpError, notFound, serviceUnavailable, validationError, } from '@cyanheads/mcp-ts-core/errors';
6
6
  import { getServerConfig } from '../../config/server-config.js';
7
- const MAX_RETRIES = 3;
7
+ const DEFAULT_MAX_RETRIES = 6;
8
+ const DEFAULT_BASE_BACKOFF_MS = 1000;
9
+ const DEFAULT_MAX_BACKOFF_MS = 30_000;
8
10
  const RETRYABLE_STATUS = new Set([429, 500, 502, 503, 504]);
9
11
  const MIN_INTERVAL_MS = 1000;
10
12
  export class ClinicalTrialsService {
11
13
  baseUrl;
12
14
  timeoutMs;
13
15
  maxPageSize;
16
+ maxRetries;
17
+ baseBackoffMs;
18
+ maxBackoffMs;
14
19
  lastRequestAt = 0;
15
- constructor(config) {
20
+ constructor(config, options = {}) {
16
21
  this.baseUrl = config.apiBaseUrl;
17
22
  this.timeoutMs = config.requestTimeoutMs;
18
23
  this.maxPageSize = config.maxPageSize;
24
+ this.maxRetries = options.maxRetries ?? DEFAULT_MAX_RETRIES;
25
+ this.baseBackoffMs = options.baseBackoffMs ?? DEFAULT_BASE_BACKOFF_MS;
26
+ this.maxBackoffMs = options.maxBackoffMs ?? DEFAULT_MAX_BACKOFF_MS;
19
27
  }
20
28
  /** Search studies with query, filters, pagination, and field selection. */
21
29
  searchStudies(params, ctx) {
@@ -113,12 +121,19 @@ export class ClinicalTrialsService {
113
121
  url.searchParams.set(k, v);
114
122
  }
115
123
  let lastError;
116
- for (let attempt = 0; attempt <= MAX_RETRIES; attempt++) {
124
+ let lastStatus;
125
+ for (let attempt = 0; attempt <= this.maxRetries; attempt++) {
117
126
  if (ctx.signal.aborted)
118
127
  throw new Error('Request cancelled');
119
128
  if (attempt > 0) {
120
- const delay = Math.min(1000 * 2 ** (attempt - 1), 8000) + Math.random() * 500;
121
- ctx.log.debug('Retrying', { attempt, delay: Math.round(delay), path });
129
+ const base = Math.min(this.baseBackoffMs * 2 ** (attempt - 1), this.maxBackoffMs);
130
+ const delay = base * (0.75 + 0.5 * Math.random());
131
+ ctx.log.debug('Retrying', {
132
+ attempt,
133
+ delay: Math.round(delay),
134
+ path,
135
+ lastStatus,
136
+ });
122
137
  await new Promise((r) => setTimeout(r, delay));
123
138
  }
124
139
  await this.throttle();
@@ -173,6 +188,7 @@ export class ClinicalTrialsService {
173
188
  }
174
189
  if (RETRYABLE_STATUS.has(res.status)) {
175
190
  lastError = new Error(`HTTP ${res.status}`);
191
+ lastStatus = res.status;
176
192
  continue;
177
193
  }
178
194
  throw new Error(`HTTP ${res.status}: ${res.statusText}`);
@@ -192,9 +208,13 @@ export class ClinicalTrialsService {
192
208
  throw err;
193
209
  }
194
210
  }
211
+ if (lastStatus === 429) {
212
+ throw new McpError(JsonRpcErrorCode.RateLimited, `Rate limited by ClinicalTrials.gov after ${this.maxRetries} retries`, { path, lastError: String(lastError) });
213
+ }
195
214
  throw serviceUnavailable('ClinicalTrials.gov API unavailable after retries', {
196
215
  path,
197
216
  lastError: String(lastError),
217
+ ...(lastStatus != null ? { lastStatus } : {}),
198
218
  });
199
219
  }
200
220
  }
package/dist/services/clinical-trials/clinical-trials-service.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ 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package/dist/services/clinical-trials/types.d.ts CHANGED
@@ -33,6 +33,23 @@ export interface StudyLocation {
33
33
  }
34
34
  /** Typed subset of the raw study response for accessing common nested fields. */
35
35
  export interface RawStudyShape {
36
+ derivedSection?: {
37
+ conditionBrowseModule?: {
38
+ meshes?: Array<{
39
+ id?: string;
40
+ term?: string;
41
+ }>;
42
+ };
43
+ interventionBrowseModule?: {
44
+ meshes?: Array<{
45
+ id?: string;
46
+ term?: string;
47
+ }>;
48
+ };
49
+ miscInfoModule?: {
50
+ versionHolder?: string;
51
+ };
52
+ };
36
53
  hasResults?: boolean;
37
54
  protocolSection?: {
38
55
  armsInterventionsModule?: {
@@ -62,10 +79,20 @@ export interface RawStudyShape {
62
79
  };
63
80
  descriptionModule?: {
64
81
  briefSummary?: string;
82
+ detailedDescription?: string;
65
83
  };
66
84
  designModule?: {
85
+ designInfo?: {
86
+ allocation?: string;
87
+ interventionModel?: string;
88
+ maskingInfo?: {
89
+ masking?: string;
90
+ };
91
+ primaryPurpose?: string;
92
+ };
67
93
  enrollmentInfo?: {
68
94
  count?: number;
95
+ type?: string;
69
96
  };
70
97
  phases?: string[];
71
98
  studyType?: string;
@@ -83,17 +110,55 @@ export interface RawStudyShape {
83
110
  briefTitle?: string;
84
111
  nctId?: string;
85
112
  officialTitle?: string;
113
+ orgStudyIdInfo?: {
114
+ id?: string;
115
+ };
116
+ organization?: {
117
+ fullName?: string;
118
+ };
119
+ secondaryIdInfos?: Array<{
120
+ id?: string;
121
+ type?: string;
122
+ }>;
123
+ };
124
+ ipdSharingStatementModule?: {
125
+ description?: string;
126
+ ipdSharing?: string;
127
+ timeFrame?: string;
86
128
  };
87
129
  outcomesModule?: {
130
+ otherOutcomes?: Array<{
131
+ description?: string;
132
+ measure?: string;
133
+ timeFrame?: string;
134
+ }>;
88
135
  primaryOutcomes?: Array<{
136
+ description?: string;
89
137
  measure?: string;
90
138
  timeFrame?: string;
91
139
  }>;
92
140
  secondaryOutcomes?: Array<{
141
+ description?: string;
93
142
  measure?: string;
94
143
  timeFrame?: string;
95
144
  }>;
96
145
  };
146
+ oversightModule?: {
147
+ isFdaRegulatedDevice?: boolean;
148
+ isFdaRegulatedDrug?: boolean;
149
+ oversightHasDmc?: boolean;
150
+ };
151
+ referencesModule?: {
152
+ references?: Array<{
153
+ citation?: string;
154
+ pmid?: string;
155
+ type?: string;
156
+ }>;
157
+ seeAlsoLinks?: Array<{
158
+ label?: string;
159
+ url?: string;
160
+ }>;
161
+ };
97
162
  sponsorCollaboratorsModule?: {
98
163
  collaborators?: Array<{
99
164
  class?: string;
@@ -107,14 +172,28 @@ export interface RawStudyShape {
107
172
  statusModule?: {
108
173
  completionDateStruct?: {
109
174
  date?: string;
175
+ type?: string;
176
+ };
177
+ lastUpdatePostDateStruct?: {
178
+ date?: string;
179
+ type?: string;
110
180
  };
181
+ lastUpdateSubmitDate?: string;
111
182
  overallStatus?: string;
112
183
  primaryCompletionDateStruct?: {
113
184
  date?: string;
185
+ type?: string;
114
186
  };
115
187
  startDateStruct?: {
116
188
  date?: string;
189
+ type?: string;
117
190
  };
191
+ statusVerifiedDate?: string;
192
+ studyFirstPostDateStruct?: {
193
+ date?: string;
194
+ type?: string;
195
+ };
196
+ studyFirstSubmitDate?: string;
118
197
  };
119
198
  };
120
199
  resultsSection?: Record<string, Record<string, unknown>>;
@@ -125,17 +204,24 @@ export interface PagedStudiesResponse {
125
204
  studies: Study[];
126
205
  totalCount?: number;
127
206
  }
128
- /** Field value statistics from GET /stats/field/values. */
207
+ /**
208
+ * Field value statistics from GET /stats/field/values.
209
+ *
210
+ * `topValues` and `uniqueValuesCount` are omitted for BOOLEAN fields, which
211
+ * return `trueCount`/`falseCount` instead.
212
+ */
129
213
  export interface FieldValueStats {
214
+ falseCount?: number;
130
215
  field: string;
131
216
  missingStudiesCount: number;
132
217
  piece: string;
133
- topValues: Array<{
218
+ topValues?: Array<{
134
219
  value: string;
135
220
  studiesCount: number;
136
221
  }>;
222
+ trueCount?: number;
137
223
  type: string;
138
- uniqueValuesCount: number;
224
+ uniqueValuesCount?: number;
139
225
  }
140
226
  /** Field node from GET /studies/metadata. */
141
227
  export interface FieldNode {
package/dist/services/clinical-trials/types.d.ts.map CHANGED
@@ -1 +1 @@
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1
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "clinicaltrialsgov-mcp-server",
3
- "version": "2.2.0",
3
+ "version": "2.3.0",
4
4
  "mcpName": "io.github.cyanheads/clinicaltrialsgov-mcp-server",
5
5
  "description": "MCP server for the ClinicalTrials.gov v2 API. Search trials, retrieve study details and results, and match patients to eligible trials.",
6
6
  "main": "dist/index.js",
@@ -100,7 +100,7 @@
100
100
  "node": ">=22.0.0"
101
101
  },
102
102
  "dependencies": {
103
- "@cyanheads/mcp-ts-core": "^0.4.1",
103
+ "@cyanheads/mcp-ts-core": "^0.5.0",
104
104
  "pino": "^10.3.1",
105
105
  "pino-pretty": "^13.1.3"
106
106
  },