clementine-agent 1.18.120 → 1.18.122

package/dist/agent/run-agent-cron.d.ts

@@ -70,6 +70,7 @@ export interface SkillContextResult {
  */
 export declare function buildSkillContext(jobName: string, jobPrompt: string, agentSlug: string | undefined, pinnedSkills: string[] | undefined, memoryStore?: MemoryStore | null, opts?: {
     skipAutoMatch?: boolean;
+    projectWorkDir?: string;
 }): Promise<SkillContextResult>;
 /** Minimal interface for the post-task reflection + skill extraction
  *  hooks. Lets `runAgentCron` stay decoupled from the full
@@ -128,6 +129,11 @@ export interface RunAgentCronOptions {
      *  prior progress. The fix for fire-time memory drift. Undefined =
      *  legacy behavior (inject everything). */
     predictable?: boolean;
+    /** Extra read+execute scope for the agent's Read/Bash/Glob tools. Maps
+     *  directly to the CronJobDefinition.addDirs YAML field. Combined with
+     *  every pinned-skill folder so `Bash python3 scripts/render.py` works
+     *  from inside a skill bundle without the cwd being set there. */
+    addDirs?: string[];
 }
 export interface RunAgentCronResult extends RunAgentResult {
     /** The final prompt that was sent to the agent (after context injection).
@@ -184,6 +190,12 @@ export interface CronExecutionPlan {
      *  MEMORY.md / team / delegation / auto-skills were intentionally
      *  skipped. Used by the Preview verdict line. */
     predictable: boolean;
+    /** Merged list of extra directories the SDK should expose to the agent's
+     *  Read/Bash/Glob tools. Combines `opts.addDirs` with every pinned-skill
+     *  folder so a skill's `scripts/render.py` is reachable without the cwd
+     *  being set inside the skill folder. Deduped + filtered to existing
+     *  paths. Empty when the trick has no addDirs and no folder-form pins. */
+    additionalDirectories: string[];
 }
 /**
  * Plan a cron run — assemble all context, resolve skills, intersect tool/MCP

package/dist/agent/run-agent-cron.js

@@ -245,14 +245,42 @@ export async function buildSkillContext(jobName, jobPrompt, agentSlug, pinnedSki
             : (suppressedNamesRaw ?? undefined);
         const prepared = [];
         const seen = new Set();
-        // 1. Load pinned skills first via exact slug lookup.
+        // 1. Load pinned skills first via exact slug lookup. When the cron has
+        //    a workDir set, we ALSO check for a project-scoped skill at
+        //    <workDir>/.clementine/skills/<name>/SKILL.md before falling back
+        //    to the global lookup. This closes the SDK-alignment gap from the
+        //    1.18.121 audit (project skills were silently unreachable from the
+        //    cron runtime even though skill-store.getSkill supported them).
         if (pinnedSkills?.length) {
+            const projectGetSkill = opts?.projectWorkDir
+                ? (await import('./skill-store.js')).getSkill
+                : null;
             for (const pinName of pinnedSkills) {
                 if (seen.has(pinName))
                     continue;
                 if (prepared.length >= MAX_INJECTED_SKILLS)
                     break;
-                const skill = loadSkillByName(pinName, agentSlug, { suppressedNames });
+                // Project-scoped first when a workDir is in scope. The skill-store
+                // shape differs from the runtime's SkillMatch — adapt it here so
+                // the rest of the pipeline doesn't care which loader returned it.
+                let skill = null;
+                if (projectGetSkill && opts?.projectWorkDir) {
+                    const ps = projectGetSkill(pinName, { projectWorkDir: opts.projectWorkDir });
+                    if (ps && ps.scope === 'project') {
+                        const ext = (ps.frontmatter.clementine ?? {});
+                        const tools = ext.tools?.allow ?? [];
+                        skill = {
+                            name: ps.frontmatter.name,
+                            title: String(ps.frontmatter.title ?? ps.frontmatter.name),
+                            content: ps.body,
+                            toolsUsed: Array.isArray(tools) ? tools.map(String) : [],
+                            attachments: [],
+                            skillDir: path.dirname(path.dirname(ps.filePath)),
+                        };
+                    }
+                }
+                if (!skill)
+                    skill = loadSkillByName(pinName, agentSlug, { suppressedNames });
                 if (!skill) {
                     missing.push(pinName);
                     logger.warn({ jobName, pin: pinName, agentSlug }, 'cron: pinned skill not found');
@@ -403,7 +431,7 @@ export async function buildCronExecutionPlan(opts) {
     const delegationContext = predictable ? '' : buildDelegationContext(agentSlug);
     const teamContext = predictable ? '' : buildTeamContext(agentSlug);
     const criteriaContext = buildCriteriaContext(opts.successCriteria);
-    const skillResult = await buildSkillContext(opts.jobName, opts.jobPrompt, agentSlug, opts.pinnedSkills, opts.memoryStore, { skipAutoMatch: predictable });
+    const skillResult = await buildSkillContext(opts.jobName, opts.jobPrompt, agentSlug, opts.pinnedSkills, opts.memoryStore, { skipAutoMatch: predictable, projectWorkDir: opts.workDir });
     const skillContext = skillResult.text;
     const howToRespond = `## How to respond\n` +
         `You're sending this directly to ${ownerName} as a DM. ` +
@@ -448,6 +476,46 @@ export async function buildCronExecutionPlan(opts) {
     const configuredCap = tier >= 2 ? BUDGET.cronT2 : BUDGET.cronT1;
     const maxBudget = opts.maxBudgetUsd ?? (configuredCap > 0 ? configuredCap : undefined);
     const effort = tier >= 2 ? 'high' : 'medium';
+    // 1.18.121 — assemble additionalDirectories. Combines:
+    //   1. opts.addDirs (from CronJobDefinition.addDirs YAML field)
+    //   2. Every pinned-skill folder so the skill's scripts/ + reference docs
+    //      are reachable via Read/Bash without the cwd being set inside the
+    //      skill folder.
+    // Deduped via Set; filtered to paths that actually exist on disk so we
+    // don't trigger SDK errors on stale references.
+    const dirSet = new Set();
+    for (const d of opts.addDirs ?? []) {
+        if (d && typeof d === 'string')
+            dirSet.add(d);
+    }
+    for (const applied of skillResult.applied) {
+        // skillResult.applied lacks the on-disk path; pull it from the prepared
+        // skill list (which we have in scope as a closure via the skillContext
+        // builder). Cheaper to reconstruct: every pinned-form skill lives at
+        // `<skillsRoot>/<name>/SKILL.md` and we want to expose `<skillsRoot>/<name>/`.
+        // Walk both global + agent-scoped roots; first hit wins.
+        const candidates = [
+            path.join(VAULT_DIR, '00-System', 'skills', applied.name),
+        ];
+        if (agentSlug) {
+            candidates.unshift(path.join(VAULT_DIR, '00-System', 'agents', agentSlug, 'skills', applied.name));
+        }
+        for (const candidate of candidates) {
+            if (fs.existsSync(path.join(candidate, 'SKILL.md'))) {
+                dirSet.add(candidate);
+                break;
+            }
+        }
+    }
+    // Final filter: only emit dirs that exist (the SDK errors on missing).
+    const additionalDirectories = [...dirSet].filter(d => {
+        try {
+            return fs.statSync(d).isDirectory();
+        }
+        catch {
+            return false;
+        }
+    });
     return {
         builtPrompt,
         contextBlocks: {
@@ -468,6 +536,7 @@ export async function buildCronExecutionPlan(opts) {
         agentSlug,
         ownerName,
         predictable,
+        additionalDirectories,
     };
 }
 /**
@@ -483,7 +552,7 @@ export async function buildCronExecutionPlan(opts) {
  */
 export async function runAgentCron(opts) {
     const plan = await buildCronExecutionPlan(opts);
-    const { builtPrompt, agentSlug, effort, maxBudgetUsd: maxBudget, effectiveAllowedTools, mcpServerMap, composioConnected, externalConnected, mcpServersApplied, } = plan;
+    const { builtPrompt, agentSlug, effort, maxBudgetUsd: maxBudget, effectiveAllowedTools, mcpServerMap, composioConnected, externalConnected, mcpServersApplied, additionalDirectories, } = plan;
     logger.info({
         job: opts.jobName,
         tier: plan.tier,
@@ -511,6 +580,10 @@ export async function runAgentCron(opts) {
         abortSignal: opts.abortSignal,
         ...(effectiveAllowedTools ? { allowedTools: effectiveAllowedTools } : {}),
         extraMcpServers: mcpServerMap,
+        // 1.18.121 — pipe the merged addDirs+pinned-skill folders to the SDK
+        // so a skill's bundled scripts/templates are reachable via Bash/Read
+        // without making the cwd the skill folder.
+        ...(additionalDirectories.length > 0 ? { additionalDirectories } : {}),
     });
     // Mirror the run into transcripts so future chat recall can see it.
     // Legacy runCronJob did this with role='cron'; canonical needs the

package/dist/agent/run-agent.d.ts

@@ -81,6 +81,13 @@ export interface RunAgentOptions {
     allowedTools?: string[];
     /** Optional CLAUDE.md / project setting source. Defaults to ['project']. */
     settingSources?: ('project' | 'user' | 'local')[];
+    /** Extra directories the SDK should make available to the agent's tools
+     *  (Read/Bash/Glob/Grep) beyond `cwd`. Maps directly to the SDK's
+     *  `additionalDirectories` option. The cron runtime uses this to surface
+     *  pinned-skill folders so the agent can `Bash python3 scripts/render.py`
+     *  inside a skill bundle without the cwd being set to that folder.
+     *  Captured in CronJobDefinition.addDirs and piped through buildPrompt. */
+    additionalDirectories?: string[];
     /** Additional MCP servers to merge with the always-on clementine-tools
      *  server. Use to wire Composio + claude.ai integrations on chat-path
      *  invocations that need Outlook/Salesforce/etc. */

package/dist/agent/run-agent.js

@@ -299,6 +299,14 @@ export async function runAgent(prompt, opts) {
         ...(opts.model ? { model: opts.model } : {}),
         ...(opts.resumeSessionId ? { resume: opts.resumeSessionId } : {}),
         ...(sdkAbortController ? { abortController: sdkAbortController } : {}),
+        // 1.18.121 — pipe additionalDirectories through to the SDK so agents
+        // can Read / Bash inside pinned-skill folders, project-scoped skills,
+        // and any cron's add_dirs scope without their cwd being set to those
+        // folders. Was captured in CronJobDefinition.addDirs since 1.18.77 but
+        // never reached the SDK call site — this closes that gap.
+        ...(opts.additionalDirectories && opts.additionalDirectories.length > 0
+            ? { additionalDirectories: opts.additionalDirectories }
+            : {}),
     };
     const sdkOptions = normalizeClaudeSdkOptionsForOneMillionContext(sdkOptionsRaw);
     logger.info({

package/dist/agent/skill-extractor.d.ts

@@ -79,15 +79,6 @@ export declare function loadSkillByName(name: string, agentSlug?: string, opts?:
  *  `clementine.useCount` (Anthropic-canonical frontmatter keeps top-level
  *  reserved for `name`/`description`). */
 export declare function recordSkillUse(skillName: string, agentSlug?: string): void;
-/** List all active skills (global + all agent-scoped). */
-export declare function listSkills(agentSlug?: string): Array<{
-    name: string;
-    title: string;
-    source: string;
-    useCount: number;
-    updatedAt: string;
-    agentSlug?: string;
-}>;
 /**
  * Move skills that were never used (useCount=0, no usage telemetry rows) and
  * are older than `olderThanDays` to the `.archive/` subdirectory inside their

package/dist/agent/skill-extractor.js

@@ -667,36 +667,6 @@ export function recordSkillUse(skillName, agentSlug) {
     }
     catch { /* non-fatal */ }
 }
-/** List all active skills (global + all agent-scoped). */
-export function listSkills(agentSlug) {
-    const results = [];
-    const dirs = [];
-    if (agentSlug) {
-        dirs.push({ dir: agentSkillsDir(agentSlug), slug: agentSlug });
-    }
-    else {
-        dirs.push({ dir: GLOBAL_SKILLS_DIR });
-    }
-    for (const { dir, slug } of dirs) {
-        if (!existsSync(dir))
-            continue;
-        for (const f of readdirSync(dir).filter(f => f.endsWith('.md'))) {
-            try {
-                const parsed = matter(readFileSync(path.join(dir, f), 'utf-8'));
-                results.push({
-                    name: f.replace('.md', ''),
-                    title: parsed.data.title ?? f,
-                    source: parsed.data.source ?? 'unknown',
-                    useCount: parsed.data.useCount ?? 0,
-                    updatedAt: parsed.data.updatedAt ?? '',
-                    agentSlug: slug,
-                });
-            }
-            catch { /* skip */ }
-        }
-    }
-    return results;
-}
 // ── Stale skill archival ────────────────────────────────────────────
 /**
  * Move skills that were never used (useCount=0, no usage telemetry rows) and

package/dist/agent/skill-store.d.ts

@@ -77,10 +77,5 @@ export declare function migrateAllLegacySkills(): {
     migrated: MigrationResult[];
     skipped: MigrationResult[];
 };
-/** Diagnostics for the dashboard — expose where the loader looked. */
-export declare function _skillDirsForDiagnostics(workDir?: string): {
-    global: string;
-    project: string | null;
-};
 export {};
 //# sourceMappingURL=skill-store.d.ts.map

package/dist/agent/skill-store.js

@@ -647,8 +647,4 @@ export function migrateAllLegacySkills() {
     }
     return { migrated, skipped };
 }
-/** Diagnostics for the dashboard — expose where the loader looked. */
-export function _skillDirsForDiagnostics(workDir) {
-    return { global: globalSkillsDir(), project: projectSkillsDir(workDir) ?? null };
-}
 //# sourceMappingURL=skill-store.js.map

package/dist/cli/dashboard.js

@@ -14419,6 +14419,9 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
   }
   .toast.success { border-left: 3px solid var(--green); }
   .toast.error { border-left: 3px solid var(--red); }
+  /* 1.18.122 — variants used by callsites that lacked CSS support */
+  .toast.warn { border-left: 3px solid var(--yellow); }
+  .toast.info { border-left: 3px solid var(--accent); }
   @keyframes toastIn {
     from { transform: translateX(40px); opacity: 0; }
     to { transform: translateX(0); opacity: 1; }
@@ -19466,11 +19469,11 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           clearInterval(ticker);
 
           if (errorMsg) {
-            manifestEl.innerHTML = '<div style="color:#e66">Error: ' + escapeHtml(errorMsg) + '</div>';
+            manifestEl.innerHTML = '<div style="color:var(--red)">Error: ' + escapeHtml(errorMsg) + '</div>';
             return;
           }
           if (!manifestData || !finalData) {
-            manifestEl.innerHTML = '<div style="color:#e66">Preview ended without a result. Check dashboard logs.</div>';
+            manifestEl.innerHTML = '<div style="color:var(--red)">Preview ended without a result. Check dashboard logs.</div>';
             return;
           }
 
@@ -19480,13 +19483,13 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           const manifestRows = Object.entries(manifest.formats || {})
             .map(([fmt, n]) => '<tr><td>' + escapeHtml(fmt) + '</td><td>' + n + '</td></tr>').join('');
           const warnBlock = errorsList.length
-            ? '<div style="margin-top:10px;padding:10px;background:#fff3cd;border:1px solid #f0c36d;border-radius:6px;color:#8a5a00;font-size:13px">' +
+            ? '<div style="margin-top:10px;padding:10px;background:rgba(245,158,11,0.10);border:1px solid rgba(245,158,11,0.32);border-radius:6px;color:var(--text-primary);font-size:13px">' +
               '<div style="font-weight:600;margin-bottom:4px">' + errorsList.length + ' file(s) could not be ingested</div>' +
               errorsList.map((e) => '<div style="font-family:monospace;font-size:12px">• ' + escapeHtml(e.error) + '</div>').join('') +
               '</div>'
             : '';
           const emptyNote = (preview.length === 0 && !errorsList.length)
-            ? '<div style="margin-top:10px;padding:10px;background:#fff3cd;border:1px solid #f0c36d;border-radius:6px;color:#8a5a00;font-size:13px">No records extracted. The file may be empty or in an unsupported format.</div>'
+            ? '<div style="margin-top:10px;padding:10px;background:rgba(245,158,11,0.10);border:1px solid rgba(245,158,11,0.32);border-radius:6px;color:var(--text-primary);font-size:13px">No records extracted. The file may be empty or in an unsupported format.</div>'
             : '';
           manifestEl.innerHTML =
             '<div class="card" style="padding:12px"><div style="font-weight:600;margin-bottom:8px">Manifest</div>' +
@@ -19501,7 +19504,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
               '<div style="font-weight:600">#' + (i + 1) + ' ' + escapeHtml(p.title || '(untitled)') + '</div>' +
               '<div style="color:var(--muted);font-size:12px;margin:4px 0">' + escapeHtml(p.targetRelPath || '') + '</div>' +
               '<div style="font-size:13px">' + escapeHtml((p.body || '').slice(0, 400)) + '</div>' +
-              (p.tags && p.tags.length ? '<div style="margin-top:6px;font-size:12px;color:#888">tags: ' + p.tags.map(escapeHtml).join(', ') + '</div>' : '') +
+              (p.tags && p.tags.length ? '<div style="margin-top:6px;font-size:12px;color:var(--text-muted)">tags: ' + p.tags.map(escapeHtml).join(', ') + '</div>' : '') +
               '</div>').join('');
             previewEl.innerHTML =
               '<div style="font-weight:600;margin-bottom:8px">Preview (first ' + Math.min(preview.length, 10) + ' records, dry-run)</div>' + previewHtml;
@@ -19549,11 +19552,11 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           }
 
           if (errorMsg) {
-            progEl.innerHTML = '<div style="color:#e66">Error: ' + escapeHtml(errorMsg) + '</div>';
+            progEl.innerHTML = '<div style="color:var(--red)">Error: ' + escapeHtml(errorMsg) + '</div>';
             return;
           }
           if (!finalData) {
-            progEl.innerHTML = '<div style="color:#e66">Ingestion ended without a result. Check dashboard logs.</div>';
+            progEl.innerHTML = '<div style="color:var(--red)">Ingestion ended without a result. Check dashboard logs.</div>';
             return;
           }
           const elapsed = Math.floor((Date.now() - progress.startedAt) / 1000);
@@ -19564,7 +19567,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             ? 'Ingestion complete'
             : 'Ingestion finished, but nothing was written';
           const errBlock = errList.length
-            ? '<div style="margin-top:10px;padding:10px;background:#fff3cd;border:1px solid #f0c36d;border-radius:6px;color:#8a5a00;font-size:13px">' +
+            ? '<div style="margin-top:10px;padding:10px;background:rgba(245,158,11,0.10);border:1px solid rgba(245,158,11,0.32);border-radius:6px;color:var(--text-primary);font-size:13px">' +
               '<div style="font-weight:600;margin-bottom:4px">' + errList.length + ' error(s)</div>' +
               errList.map((e) => '<div style="font-family:monospace;font-size:12px">• ' + escapeHtml(e.error) + '</div>').join('') +
               '</div>'
@@ -19655,8 +19658,8 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             }
             el.innerHTML = data.integrations.map(function(i) {
               const ok = i.connected && i.hasFeedReadyTools;
-              const color = ok ? '#2f7d32' : '#8a5a00';
-              const bg = ok ? '#e8f5e9' : '#fff3cd';
+              const color = ok ? 'var(--green)' : 'var(--text-primary)';
+              const bg = ok ? 'rgba(34,197,94,0.10)' : 'rgba(245,158,11,0.10)';
               const dot = ok ? '✓' : '⚠';
               const source = i.kind === 'composio' ? 'Composio' : (i.kind === 'claude-desktop' ? 'Claude Desktop' : 'MCP');
               const label = ok ? i.label + ' · ' + source : i.label + ' (incomplete in ' + source + ')';
@@ -19685,7 +19688,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
                 : '<span style="color:var(--muted)">no fields</span>';
               return '<div class="card" style="padding:10px 12px;margin-bottom:8px;display:flex;align-items:center;gap:12px">' +
                 '<div style="flex:1">' +
-                '<div style="font-weight:600">' + escapeHtml(f.name) + (f.enabled ? '' : ' <span style="color:#e66;font-weight:normal">(disabled)</span>') + '</div>' +
+                '<div style="font-weight:600">' + escapeHtml(f.name) + (f.enabled ? '' : ' <span style="color:var(--red);font-weight:normal">(disabled)</span>') + '</div>' +
                 '<div style="font-size:12px;color:var(--muted)">' +
                 'Recipe: <code>' + escapeHtml(f.recipeId) + '</code> · Schedule: <code>' + escapeHtml(f.schedule) + '</code> · Target: <code>' + escapeHtml(f.targetFolder) + '</code>' +
                 '</div>' +
@@ -19732,10 +19735,10 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           if (!brainFeedWizardState) return;
           const s = brainFeedWizardState;
           if (s.step === 0) {
-            if (!s.pick) { document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">Pick a connector.</span>'; return; }
+            if (!s.pick) { document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">Pick a connector.</span>'; return; }
             s.step = 1;
           } else if (s.step === 1) {
-            if (!s.recipe) { document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">Pick a recipe.</span>'; return; }
+            if (!s.recipe) { document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">Pick a recipe.</span>'; return; }
             s.values = {};
             for (const f of (s.recipe.fields || [])) {
               if (f.defaultValue) s.values[f.key] = f.defaultValue;
@@ -19752,11 +19755,11 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             const inputs = document.querySelectorAll('#brain-feed-wizard-step [data-field]');
             inputs.forEach(function(inp) { s.values[inp.dataset.field] = inp.value; });
             const missing = (s.recipe.fields || []).filter(function(f) { return f.required && !(s.values[f.key] || '').trim(); });
-            if (missing.length) { document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">Required: ' + missing.map(function(f) { return f.label; }).join(', ') + '</span>'; return; }
+            if (missing.length) { document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">Required: ' + missing.map(function(f) { return f.label; }).join(', ') + '</span>'; return; }
             if (s.recipe && s.recipe.id === 'tool-backed-memory-seed') {
               const toolName = String(s.values.toolName || '').trim();
               if (!/^mcp__.+__.+$/.test(toolName)) {
-                document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">Pick an exact tool before continuing.</span>';
+                document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">Pick an exact tool before continuing.</span>';
                 return;
               }
               const rawVariables = String(s.values.variablesJson || '').trim();
@@ -19764,12 +19767,12 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
                 try {
                   const parsedVariables = JSON.parse(rawVariables);
                   if (!parsedVariables || typeof parsedVariables !== 'object' || Array.isArray(parsedVariables)) {
-                    document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">Tool variables must be a JSON object, for example {}.</span>';
+                    document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">Tool variables must be a JSON object, for example {}.</span>';
                     return;
                   }
                 } catch (err) {
                   void err;
-                  document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">Tool variables must be valid JSON, for example {}.</span>';
+                  document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">Tool variables must be valid JSON, for example {}.</span>';
                   return;
                 }
               }
@@ -19836,7 +19839,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
               // can still set the value manually.
               container.innerHTML =
                 '<input type="text" value="' + escapeHtml(currentVal) + '" placeholder="(type a value)" style="width:100%" oninput="(document.querySelector(\\'input[type=hidden][data-field=' + field.key + ']\\')||{}).value=this.value">' +
-                '<div style="color:#8a5a00;font-size:11px;margin-top:4px">Nothing returned from the probe — type a value manually' + (data.rawPreview ? ' (probe output: ' + escapeHtml(data.rawPreview.slice(0, 120)) + '…)' : '') + '</div>';
+                '<div style="color:var(--text-primary);font-size:11px;margin-top:4px">Nothing returned from the probe — type a value manually' + (data.rawPreview ? ' (probe output: ' + escapeHtml(data.rawPreview.slice(0, 120)) + '…)' : '') + '</div>';
               return;
             }
 
@@ -19862,7 +19865,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           } catch (err) {
             container.innerHTML =
               '<input type="text" value="' + escapeHtml(values[field.key] || '') + '" placeholder="(probe failed — type manually)" style="width:100%" oninput="(document.querySelector(\\'input[type=hidden][data-field=' + field.key + ']\\')||{}).value=this.value">' +
-              '<div style="color:#e66;font-size:11px;margin-top:4px">Picker failed: ' + escapeHtml(String(err && err.message ? err.message : err)) + ' — type a value manually.</div>';
+              '<div style="color:var(--red);font-size:11px;margin-top:4px">Picker failed: ' + escapeHtml(String(err && err.message ? err.message : err)) + ' — type a value manually.</div>';
           }
         }
 
@@ -19888,7 +19891,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
               const rawHint = trimmed && !isEmptyArray
                 ? ' <span style="color:var(--muted)">Tool said: ' + escapeHtml(trimmed.slice(0, 140)) + '</span>'
                 : '';
-              resultsEl.innerHTML = '<div style="color:#8a5a00;font-size:12px;padding:6px">No matches for "' + escapeHtml(query) + '". The tool may be limited by macOS permissions or not support this query — use <a href="#" onclick="brainFieldPickerToggleCustom(\\'' + field.key + '\\', \\'\\');return false">type a value directly</a>.' + rawHint + '</div>';
+              resultsEl.innerHTML = '<div style="color:var(--text-primary);font-size:12px;padding:6px">No matches for "' + escapeHtml(query) + '". The tool may be limited by macOS permissions or not support this query — use <a href="#" onclick="brainFieldPickerToggleCustom(\\'' + field.key + '\\', \\'\\');return false">type a value directly</a>.' + rawHint + '</div>';
               return;
             }
             resultsEl.innerHTML = items.map(function(it) {
@@ -19897,7 +19900,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             }).join('') +
               '<div style="font-size:11px;color:var(--muted);margin-top:4px">' + items.length + ' result' + (items.length === 1 ? '' : 's') + (data.cached ? ' (cached)' : '') + '</div>';
           } catch (err) {
-            resultsEl.innerHTML = '<div style="color:#e66;font-size:12px;padding:6px">' + escapeHtml(String(err && err.message ? err.message : err)) + '</div>';
+            resultsEl.innerHTML = '<div style="color:var(--red);font-size:12px;padding:6px">' + escapeHtml(String(err && err.message ? err.message : err)) + '</div>';
           }
         }
 
@@ -19963,7 +19966,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           let html = '';
           if (s.step === 0) {
             if (!s.connected.length) {
-              html = '<div style="color:#8a5a00">No connectors have feed-ready tools. Connect Composio or open Claude Desktop → Connectors and sign into Google Drive, Outlook, Gmail, or Slack first.</div>';
+              html = '<div style="color:var(--text-primary)">No connectors have feed-ready tools. Connect Composio or open Claude Desktop → Connectors and sign into Google Drive, Outlook, Gmail, or Slack first.</div>';
             } else {
               html = '<div style="display:grid;grid-template-columns:repeat(auto-fill,minmax(180px,1fr));gap:8px">' +
                 s.connected.map(function(i) {
@@ -20026,7 +20029,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
                   } else {
                     control = '<input type="text" data-field="' + f.key + '" value="' + escapeHtml(val) + '" placeholder="' + escapeHtml(f.placeholder || '') + '" style="width:100%">';
                   }
-                  return '<label style="font-weight:500;padding-top:6px">' + escapeHtml(f.label) + (f.required ? ' <span style="color:#e66">*</span>' : '') + '</label>' +
+                  return '<label style="font-weight:500;padding-top:6px">' + escapeHtml(f.label) + (f.required ? ' <span style="color:var(--red)">*</span>' : '') + '</label>' +
                     '<div>' + control + help + '</div>';
                 }).join('') + '</div>';
 
@@ -20091,13 +20094,13 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             });
             const data = await resp.json();
             if (!resp.ok) {
-              document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">' + escapeHtml(data.error || 'save failed') + '</span>';
+              document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">' + escapeHtml(data.error || 'save failed') + '</span>';
               return;
             }
             brainCloseFeedWizard();
             brainLoadFeeds();
           } catch (err) {
-            document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:#e66">' + escapeHtml(String(err)) + '</span>';
+            document.getElementById('brain-feed-wizard-status').innerHTML = '<span style="color:var(--red)">' + escapeHtml(String(err)) + '</span>';
           }
         }
 
@@ -20210,8 +20213,8 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           const slug = document.getElementById('brain-webhook-slug').value.trim();
           const folder = document.getElementById('brain-webhook-folder').value.trim() || ('04-Ingest/' + slug);
           const statusEl = document.getElementById('brain-webhook-status');
-          if (!slug) { statusEl.innerHTML = '<span style="color:#e66">slug required</span>'; return; }
-          if (!/^[a-z][a-z0-9_-]*$/.test(slug)) { statusEl.innerHTML = '<span style="color:#e66">slug must be lowercase alphanumeric</span>'; return; }
+          if (!slug) { statusEl.innerHTML = '<span style="color:var(--red)">slug required</span>'; return; }
+          if (!/^[a-z][a-z0-9_-]*$/.test(slug)) { statusEl.innerHTML = '<span style="color:var(--red)">slug must be lowercase alphanumeric</span>'; return; }
 
           // 1) Generate a random 32-byte secret and save it under ref "webhook_<slug>"
           const bytes = new Uint8Array(32);
@@ -20226,7 +20229,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           });
           if (!credResp.ok) {
             const e = await credResp.json();
-            statusEl.innerHTML = '<span style="color:#e66">Secret save failed: ' + escapeHtml(e.error || 'unknown') + '</span>';
+            statusEl.innerHTML = '<span style="color:var(--red)">Secret save failed: ' + escapeHtml(e.error || 'unknown') + '</span>';
             return;
           }
 
@@ -20246,7 +20249,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           });
           if (!resp.ok) {
             const e = await resp.json();
-            statusEl.innerHTML = '<span style="color:#e66">' + escapeHtml(e.error || 'save failed') + '</span>';
+            statusEl.innerHTML = '<span style="color:var(--red)">' + escapeHtml(e.error || 'save failed') + '</span>';
             return;
           }
 
@@ -20271,7 +20274,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           const cronExpr = document.getElementById('brain-poll-cron').value.trim();
           const folder = document.getElementById('brain-poll-folder').value.trim();
           const statusEl = document.getElementById('brain-poll-status');
-          if (!slug || !url) { statusEl.innerHTML = '<span style="color:#e66">slug and URL required</span>'; return; }
+          if (!slug || !url) { statusEl.innerHTML = '<span style="color:var(--red)">slug and URL required</span>'; return; }
 
           const headers = brainCollectKv('headers');
           const params = brainCollectKv('params');
@@ -20293,7 +20296,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             }),
           });
           const data = await resp.json();
-          if (!resp.ok) { statusEl.innerHTML = '<span style="color:#e66">' + escapeHtml(data.error || 'save failed') + '</span>'; return; }
+          if (!resp.ok) { statusEl.innerHTML = '<span style="color:var(--red)">' + escapeHtml(data.error || 'save failed') + '</span>'; return; }
           statusEl.innerHTML = '<span style="color:#4ade80">✓ Saved</span>';
 
           if (runNow) {
@@ -20302,7 +20305,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             const runData = await runResp.json();
             statusEl.innerHTML = runResp.ok
               ? '<span style="color:#4ade80">✓ Saved + run: in=' + runData.recordsIn + ' written=' + runData.recordsWritten + '</span>'
-              : '<span style="color:#e66">Saved but run failed: ' + escapeHtml(runData.error || 'unknown') + '</span>';
+              : '<span style="color:var(--red)">Saved but run failed: ' + escapeHtml(runData.error || 'unknown') + '</span>';
           }
           brainLoadSources();
         }
@@ -20323,7 +20326,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           const ref = document.getElementById('brain-cred-ref').value.trim();
           const value = document.getElementById('brain-cred-val').value;
           const statusEl = document.getElementById('brain-cred-status');
-          if (!ref || !value) { statusEl.innerHTML = '<span style="color:#e66">ref and value required</span>'; return; }
+          if (!ref || !value) { statusEl.innerHTML = '<span style="color:var(--red)">ref and value required</span>'; return; }
           const resp = await apiFetch('/api/brain/credentials', {
             method: 'POST', headers: { 'content-type': 'application/json' },
             body: JSON.stringify({ ref, value }),
@@ -20331,7 +20334,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
           const data = await resp.json();
           statusEl.innerHTML = resp.ok
             ? '<span style="color:#4ade80">✓ Saved ' + escapeHtml(ref) + '</span>'
-            : '<span style="color:#e66">' + escapeHtml(data.error || 'save failed') + '</span>';
+            : '<span style="color:var(--red)">' + escapeHtml(data.error || 'save failed') + '</span>';
           document.getElementById('brain-cred-ref').value = '';
           document.getElementById('brain-cred-val').value = '';
           brainShowCredsForm(); // refresh list
@@ -20425,7 +20428,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             });
             const data = await resp.json();
             if (!resp.ok) {
-              statusEl.innerHTML = '<span style="color:#e66">Upload failed: ' + escapeHtml(data.error || 'unknown') + '</span>';
+              statusEl.innerHTML = '<span style="color:var(--red)">Upload failed: ' + escapeHtml(data.error || 'unknown') + '</span>';
               return;
             }
             statusEl.innerHTML = '<span style="color:#4ade80">✓ Uploaded ' + data.count + ' file(s)</span>';
@@ -20433,7 +20436,7 @@ if('serviceWorker' in navigator){navigator.serviceWorker.getRegistrations().then
             // Kick off preview immediately
             await brainPreviewSeed();
           } catch (err) {
-            statusEl.innerHTML = '<span style="color:#e66">Upload error: ' + escapeHtml(String(err)) + '</span>';
+            statusEl.innerHTML = '<span style="color:var(--red)">Upload error: ' + escapeHtml(String(err)) + '</span>';
           }
         }
 
@@ -32709,7 +32712,7 @@ async function deleteSkillFromStudio(name) {
     await apiDelete('/api/skills/' + encodeURIComponent(name));
     toast('Skill deleted', 'success');
     refreshBuilderSkills();
-    refreshSkills(); // also refresh the automations tab list
+    refreshSkillsPage(); // also refresh the automations tab list
   } catch(e) { toast('Error: ' + e, 'error'); }
 }
 
@@ -33093,7 +33096,7 @@ async function saveBuilderArtifact() {
       msgs.innerHTML += '<div style="text-align:center;padding:12px;color:var(--green);font-size:13px;font-weight:600">\\u2714 ' + esc(r.message || 'Saved') + '</div>';
       msgs.scrollTop = msgs.scrollHeight;
       document.getElementById('builder-save-btn').style.display = 'none';
-      if (type === 'skill') { refreshSkills(); refreshBuilderSkills(); }
+      if (type === 'skill') { refreshSkillsPage(); refreshBuilderSkills(); }
       if (type === 'cron') refreshCron();
       if (type === 'agent') refreshTeamNav();
       if (type === 'workflow') refreshWorkflows();
@@ -37299,7 +37302,7 @@ async function saveSkill() {
       document.getElementById('skill-description').value = '';
       document.getElementById('skill-triggers').value = '';
       document.getElementById('skill-steps').value = '';
-      refreshSkills();
+      refreshSkillsPage();
     } else {
       toast('Failed: ' + (r.error || 'unknown'), 'error');
     }
@@ -37311,7 +37314,7 @@ async function deleteSkill(name) {
   try {
     await apiDelete('/api/skills/' + encodeURIComponent(name));
     toast('Skill deleted', 'success');
-    refreshSkills();
+    refreshSkillsPage();
   } catch(e) { toast('Error: ' + e, 'error'); }
 }
 
@@ -37643,152 +37646,8 @@ async function refreshBrokenJobs() {
   }
 }
 
-async function refreshPendingSkills() {
-  try {
-    var r = await apiFetch('/api/skills/pending');
-    var d = await r.json();
-    var pending = d.skills || [];
-    var tabBadge = document.getElementById('tab-pending-skill-count');
-    if (tabBadge) {
-      tabBadge.textContent = String(pending.length);
-      tabBadge.style.display = pending.length > 0 ? '' : 'none';
-    }
-    var card = document.getElementById('pending-skills-card');
-    var countBadge = document.getElementById('pending-skills-count-badge');
-    var container = document.getElementById('panel-pending-skills');
-    if (!container) return;
-    if (pending.length === 0) {
-      if (card) card.style.display = 'none';
-      container.innerHTML = '';
-      return;
-    }
-    if (card) card.style.display = '';
-    if (countBadge) countBadge.textContent = pending.length + ' pending';
 
-    var html = '<div style="display:flex;flex-direction:column;gap:10px">';
-    for (var s of pending) {
-      var sourceTag = s.source === 'cron' ? '<span class="badge badge-green" style="font-size:10px">cron</span>'
-        : s.source === 'unleashed' ? '<span class="badge badge-purple" style="font-size:10px">unleashed</span>'
-        : s.source === 'chat' ? '<span class="badge badge-blue" style="font-size:10px">chat</span>'
-        : '<span class="badge badge-gray" style="font-size:10px">' + esc(s.source || 'unknown') + '</span>';
-      var age = s.createdAt ? timeAgo(s.createdAt) : '';
-      var scopeTag = s.agentSlug
-        ? '<span style="font-size:10px;color:var(--text-muted)">for ' + esc(s.agentSlug) + '</span>'
-        : '<span style="font-size:10px;color:var(--text-muted)">global</span>';
-      html += '<div style="padding:12px;border:1px solid var(--border);border-radius:8px;background:var(--bg-secondary)">'
-        + '<div style="display:flex;align-items:center;gap:8px;margin-bottom:6px;flex-wrap:wrap">'
-        + '<strong>' + esc(s.title) + '</strong> ' + sourceTag + ' ' + scopeTag
-        + (age ? ' <span style="font-size:10px;color:var(--text-muted)">\\u00b7 learned ' + age + '</span>' : '')
-        + '<span style="margin-left:auto;display:flex;gap:6px">'
-        + '<button onclick="approvePendingSkill(\\x27' + esc(s.name) + '\\x27)" style="background:var(--accent);border:1px solid var(--accent);border-radius:4px;padding:3px 10px;font-size:11px;color:white;cursor:pointer">Approve</button>'
-        + '<button onclick="rejectPendingSkill(\\x27' + esc(s.name) + '\\x27)" style="background:none;border:1px solid var(--border);border-radius:4px;padding:3px 10px;font-size:11px;color:var(--red);cursor:pointer">Reject</button>'
-        + '</span>'
-        + '</div>'
-        + '<div style="font-size:12px;color:var(--text-secondary)">' + esc(s.description || '') + '</div>'
-        + '</div>';
-    }
-    html += '</div>';
-    container.innerHTML = html;
-  } catch(e) { /* non-fatal */ }
-}
-
-async function approvePendingSkill(name) {
-  try {
-    var r = await apiJson('POST', '/api/skills/pending/' + encodeURIComponent(name) + '/approve', {});
-    if (r && r.ok) {
-      toast(r.message || 'Skill approved', 'success');
-      refreshPendingSkills();
-      refreshSkills();
-    } else {
-      toast((r && r.message) || 'Failed to approve', 'error');
-    }
-  } catch(e) { toast('Failed to approve skill', 'error'); }
-}
 
-async function rejectPendingSkill(name) {
-  if (!confirm('Reject this pending skill? It will be deleted.')) return;
-  try {
-    var r = await apiJson('POST', '/api/skills/pending/' + encodeURIComponent(name) + '/reject', {});
-    if (r && r.ok) {
-      toast(r.message || 'Skill rejected', 'success');
-      refreshPendingSkills();
-    } else {
-      toast((r && r.message) || 'Failed to reject', 'error');
-    }
-  } catch(e) { toast('Failed to reject skill', 'error'); }
-}
-
-async function refreshSkills() {
-  refreshPendingSkills();
-  try {
-    var r = await apiFetch('/api/skills');
-    var d = await r.json();
-    var skills = d.skills || [];
-    var badge = document.getElementById('tab-skill-count');
-    var countBadge = document.getElementById('skill-count-badge');
-    if (badge) { badge.textContent = skills.length || ''; badge.style.display = skills.length > 0 ? '' : 'none'; }
-    if (countBadge) countBadge.textContent = skills.length + ' skill' + (skills.length !== 1 ? 's' : '');
-    var navSkillBadge = document.getElementById('nav-skill-count');
-    if (navSkillBadge) { navSkillBadge.textContent = skills.length || ''; navSkillBadge.style.display = skills.length > 0 ? '' : 'none'; }
-    var container = document.getElementById('panel-skills');
-    if (!container) return;
-    if (skills.length === 0) {
-      container.innerHTML = '<div class="empty-state">No skills learned yet. Skills are auto-extracted from successful tasks or taught manually above.</div>';
-      return;
-    }
-    var html = '<div style="display:flex;flex-direction:column;gap:12px">';
-    for (var s of skills) {
-      var sourceTag = s.source === 'manual' ? '<span class="badge badge-blue" style="font-size:10px">taught</span>'
-        : s.source === 'cron' ? '<span class="badge badge-green" style="font-size:10px">cron</span>'
-        : s.source === 'unleashed' ? '<span class="badge badge-purple" style="font-size:10px">unleashed</span>'
-        : '<span class="badge badge-gray" style="font-size:10px">' + esc(s.source) + '</span>';
-      var allTriggers = s.triggers || [];
-      var shownTriggers = allTriggers.slice(0, 5).map(function(t) { return '<code style="font-size:11px;background:var(--bg-tertiary);padding:2px 6px;border-radius:3px">' + esc(t) + '</code>'; }).join(' ');
-      var triggers = shownTriggers + (allTriggers.length > 5 ? ' <span style="font-size:11px;color:var(--text-muted)">+' + (allTriggers.length - 5) + ' more</span>' : '');
-      var age = s.updatedAt ? timeAgo(s.updatedAt) : '';
-      // Source context for auto-extracted skills
-      var sourceCtx = '';
-      if (s.sourceJob) sourceCtx += '<span style="font-size:10px;color:var(--text-muted)">from ' + esc(s.sourceJob) + '</span>';
-      if (s.createdAt && (s.source === 'cron' || s.source === 'unleashed')) {
-        sourceCtx += '<span style="font-size:10px;color:var(--text-muted)">' + (sourceCtx ? ' \\u00b7 ' : '') + 'learned ' + timeAgo(s.createdAt) + '</span>';
-      }
-      // Tools used pills
-      var toolsPills = '';
-      if (s.toolsUsed && s.toolsUsed.length > 0) {
-        var shownTools = s.toolsUsed.slice(0, 4).map(function(t) {
-          return '<span style="font-size:10px;background:var(--accent)15;color:var(--accent);padding:1px 6px;border-radius:3px;border:1px solid var(--accent)30">' + esc(t) + '</span>';
-        }).join(' ');
-        toolsPills = '<div style="display:flex;gap:3px;flex-wrap:wrap;margin-top:4px">'
-          + shownTools
-          + (s.toolsUsed.length > 4 ? ' <span style="font-size:10px;color:var(--text-muted)">+' + (s.toolsUsed.length - 4) + '</span>' : '')
-          + '</div>';
-      }
-      var retrieval7d = (typeof s.retrievals7d === 'number' && s.retrievals7d > 0)
-        ? ' \\u00b7 ' + s.retrievals7d + ' retrievals (7d)'
-        : '';
-      html += '<div id="skill-card-' + esc(s.name) + '" style="padding:12px;border:1px solid var(--border);border-radius:8px;background:var(--bg-secondary)">'
-        + '<div style="display:flex;align-items:center;gap:8px;margin-bottom:6px">'
-        + '<strong style="cursor:pointer" onclick="expandSkill(\\x27' + esc(s.name) + '\\x27)">' + esc(s.title) + '</strong> ' + sourceTag
-        + (sourceCtx ? ' ' + sourceCtx : '')
-        + '<span style="margin-left:auto;display:flex;align-items:center;gap:8px">'
-        + '<span style="font-size:11px;color:var(--text-muted)">used ' + s.useCount + 'x' + (age ? ' \\u00b7 ' + age : '') + retrieval7d + '</span>'
-        + '<button onclick="expandSkill(\\x27' + esc(s.name) + '\\x27)" style="background:none;border:1px solid var(--border);border-radius:4px;padding:2px 8px;font-size:11px;color:var(--text-secondary);cursor:pointer">View</button>'
-        + '<button onclick="editSkillInBuilder(\\x27' + esc(s.name) + '\\x27)" style="background:none;border:1px solid var(--border);border-radius:4px;padding:2px 8px;font-size:11px;color:var(--accent);cursor:pointer">Edit</button>'
-        + '<button onclick="deleteSkill(\\x27' + esc(s.name) + '\\x27)" style="background:none;border:1px solid var(--border);border-radius:4px;padding:2px 8px;font-size:11px;color:var(--red);cursor:pointer">Delete</button>'
-        + '</span>'
-        + '</div>'
-        + '<div style="font-size:12px;color:var(--text-secondary);margin-bottom:4px">' + esc(s.description) + '</div>'
-        + (triggers ? '<div style="display:flex;gap:4px;flex-wrap:wrap">' + triggers + '</div>' : '')
-        + toolsPills
-        + '</div>';
-    }
-    html += '</div>';
-    container.innerHTML = html;
-  } catch(e) {
-    var c = document.getElementById('panel-skills');
-    if (c) c.innerHTML = '<div class="empty-state" style="color:var(--red)">Failed to load skills</div>';
-  }
-}
 
 // ── Agent-scoped Skills (Training tab) ──
 function toggleAgentTeachSkill() {

package/dist/cli/index.js

@@ -2728,27 +2728,47 @@ skillsCmd
     const RESET = '\x1b[0m';
     try {
         process.env.CLEMENTINE_HOME = BASE_DIR;
-        const { listSkills } = await import('../agent/skill-extractor.js');
-        const skills = listSkills(opts.agent);
+        // 1.18.121 — switched from skill-extractor (flat-only loader, broken
+        // since the 1.18.110 folder-form migration so this command was hiding
+        // every migrated skill) to skill-store, which walks both layouts and
+        // reads the canonical Anthropic frontmatter.
+        const { listSkills } = await import('../agent/skill-store.js');
+        const skills = listSkills();
+        if (opts.agent) {
+            console.error(`  ${DIM}Note: --agent filter is informational only since the 1.19 catalog. Showing all skills.${RESET}`);
+        }
         if (opts.json) {
-            console.log(JSON.stringify(skills, null, 2));
+            console.log(JSON.stringify(skills.map(s => ({
+                name: s.frontmatter.name,
+                title: s.frontmatter.title ?? s.frontmatter.name,
+                description: s.frontmatter.description ?? '',
+                layout: s.layout,
+                schemaVersion: s.schemaVersion,
+                scope: s.scope,
+                useCount: (s.frontmatter.clementine?.useCount ?? s.frontmatter.useCount ?? 0),
+                updatedAt: (s.frontmatter.clementine?.updatedAt ?? ''),
+                filePath: s.filePath,
+            })), null, 2));
             return;
         }
         if (skills.length === 0) {
             console.log();
-            console.log(`  ${DIM}No approved skills yet${opts.agent ? ` for "${opts.agent}"` : ''}.${RESET}`);
-            console.log(`  Skills get auto-extracted from successful cron / unleashed runs and queued for approval.`);
-            console.log(`  Pending: ${BOLD}clementine skills pending${RESET}`);
+            console.log(`  ${DIM}No skills found.${RESET}`);
+            console.log(`  Author one in chat ("Hey Clemmy, create a skill called X that…")`);
+            console.log(`  or in the dashboard's Skills page (${BOLD}clementine dashboard${RESET}).`);
             console.log();
             return;
         }
         console.log();
-        console.log(`  ${BOLD}${'NAME'.padEnd(36)}${'AGENT'.padEnd(20)}${'USES'.padEnd(8)}${'UPDATED'}${RESET}`);
+        console.log(`  ${BOLD}${'NAME'.padEnd(40)}${'LAYOUT'.padEnd(8)}${'USES'.padEnd(8)}${'UPDATED'}${RESET}`);
         console.log(`  ${DIM}${'─'.repeat(80)}${RESET}`);
         for (const s of skills) {
-            const agent = s.agentSlug ?? 'global';
-            const updated = s.updatedAt.slice(0, 10);
-            console.log(`  ${s.name.slice(0, 34).padEnd(36)}${CYAN}${agent.slice(0, 18).padEnd(20)}${RESET}${String(s.useCount).padEnd(8)}${DIM}${updated}${RESET}`);
+            const ext = s.frontmatter.clementine ?? {};
+            const useCount = ext.useCount ?? s.frontmatter.useCount ?? 0;
+            const rawUpdated = ext.updatedAt ?? '';
+            const updated = String(rawUpdated).slice(0, 10);
+            const layoutLabel = s.layout === 'folder' ? 'folder' : 'flat';
+            console.log(`  ${s.frontmatter.name.slice(0, 38).padEnd(40)}${CYAN}${layoutLabel.padEnd(8)}${RESET}${String(useCount).padEnd(8)}${DIM}${updated}${RESET}`);
         }
         console.log();
         console.log(`  ${DIM}Total: ${skills.length} skill${skills.length === 1 ? '' : 's'}.${RESET}`);

package/dist/gateway/cron-scheduler.js

@@ -1185,12 +1185,12 @@ export class CronScheduler {
                 const startedAt = new Date();
                 try {
                     // Standard cron jobs get a timeout via SDK AbortController (advisor may override)
-                    let response = await this.gateway.handleCronJob(job.name, jobPrompt, job.tier, job.maxTurns, job.model, job.workDir, job.mode, job.maxHours, effectiveTimeoutMs, job.successCriteria, job.agentSlug, job.skills, job.allowedTools, job.allowedMcpServers, job.predictable);
+                    let response = await this.gateway.handleCronJob(job.name, jobPrompt, job.tier, job.maxTurns, job.model, job.workDir, job.mode, job.maxHours, effectiveTimeoutMs, job.successCriteria, job.agentSlug, job.skills, job.allowedTools, job.allowedMcpServers, job.predictable, job.addDirs);
                     // alwaysDeliver: retry once if the response is empty/noise
                     if (job.alwaysDeliver && (!response || CronScheduler.isCronNoise(response))) {
                         logger.info({ job: job.name }, 'alwaysDeliver: empty/noise response — retrying once');
                         try {
-                            const retryResponse = await this.gateway.handleCronJob(job.name, jobPrompt + '\n\nYou MUST produce a brief status update. Do NOT return __NOTHING__.', job.tier, job.maxTurns, job.model, job.workDir, job.mode, job.maxHours, effectiveTimeoutMs, job.successCriteria, job.agentSlug, job.skills, job.allowedTools, job.allowedMcpServers, job.predictable);
+                            const retryResponse = await this.gateway.handleCronJob(job.name, jobPrompt + '\n\nYou MUST produce a brief status update. Do NOT return __NOTHING__.', job.tier, job.maxTurns, job.model, job.workDir, job.mode, job.maxHours, effectiveTimeoutMs, job.successCriteria, job.agentSlug, job.skills, job.allowedTools, job.allowedMcpServers, job.predictable, job.addDirs);
                             if (retryResponse && !CronScheduler.isCronNoise(retryResponse)) {
                                 response = retryResponse;
                             }

package/dist/gateway/router.d.ts

@@ -182,7 +182,11 @@ export declare class Gateway {
      *  identically. Affects only UI display + budget heuristics elsewhere. */
     _mode?: 'standard' | 'unleashed', maxHours?: number, timeoutMs?: number, successCriteria?: string[], agentSlug?: string, pinnedSkills?: string[], allowedTools?: string[], allowedMcpServers?: string[], 
     /** Predictable (contract) mode — runner skips memory/team/auto-skills. */
-    predictable?: boolean): Promise<string>;
+    predictable?: boolean, 
+    /** Extra read+exec scope for the SDK's Read/Bash/Glob tools. From the
+     *  CronJobDefinition.addDirs YAML field. Combined inside runAgentCron
+     *  with each pinned-skill folder. (1.18.121) */
+    addDirs?: string[]): Promise<string>;
     /**
      * PRD §10 / 1.18.91 — cancel an in-flight cron run by name. Returns true if
      * an AbortController was found and abort() was called, false if nothing was

package/dist/gateway/router.js

@@ -1976,7 +1976,11 @@ export class Gateway {
     // ── Trick capabilities (optional; preserve today's behavior when omitted) ─
     pinnedSkills, allowedTools, allowedMcpServers, 
     /** Predictable (contract) mode — runner skips memory/team/auto-skills. */
-    predictable) {
+    predictable, 
+    /** Extra read+exec scope for the SDK's Read/Bash/Glob tools. From the
+     *  CronJobDefinition.addDirs YAML field. Combined inside runAgentCron
+     *  with each pinned-skill folder. (1.18.121) */
+    addDirs) {
         const releaseLane = await lanes.acquire('cron');
         // Build a wall-clock abort timer from maxHours / timeoutMs.
         // Whichever is shorter wins. Defaults to 1h if neither is set.
@@ -2022,6 +2026,7 @@ export class Gateway {
                     allowedTools,
                     allowedMcpServers,
                     predictable,
+                    addDirs,
                 });
                 scanner.refreshIntegrity();
                 // Stash trick-capability metadata for the scheduler to read when

package/dist/types.d.ts

@@ -767,23 +767,21 @@ export interface Feedback {
     comment?: string;
     createdAt?: string;
 }
-export interface BehavioralCorrection {
-    correction: string;
-    category: 'verbosity' | 'tone' | 'workflow' | 'format' | 'accuracy' | 'proactivity' | 'scope';
-    strength: 'explicit' | 'implicit';
-}
-export interface PreferenceLearned {
-    preference: string;
-    confidence: 'high' | 'medium' | 'low';
-}
 export interface SessionReflection {
     id?: number;
     sessionKey: string;
     exchangeCount: number;
     frictionSignals: string[];
     qualityScore: number;
-    behavioralCorrections: BehavioralCorrection[];
-    preferencesLearned: PreferenceLearned[];
+    behavioralCorrections: Array<{
+        correction: string;
+        category: 'verbosity' | 'tone' | 'workflow' | 'format' | 'accuracy' | 'proactivity' | 'scope';
+        strength: 'explicit' | 'implicit';
+    }>;
+    preferencesLearned: Array<{
+        preference: string;
+        confidence: 'high' | 'medium' | 'low';
+    }>;
     agentSlug?: string;
     createdAt?: string;
 }
@@ -835,13 +833,6 @@ export interface ExecutionPlan {
     steps: PlanStep[];
     synthesisPrompt: string;
 }
-export interface PlanProgressUpdate {
-    stepId: string;
-    status: 'waiting' | 'running' | 'done' | 'failed';
-    description: string;
-    durationMs?: number;
-    resultPreview?: string;
-}
 export interface WorkflowInput {
     type: 'string' | 'number';
     default?: string;
@@ -853,13 +844,6 @@ export interface WorkflowStepMcpConfig {
     tool: string;
     inputs?: Record<string, unknown>;
 }
-export interface WorkflowStepCliConfig {
-    cmd: string;
-    args?: string[];
-    workDir?: string;
-    timeoutMs?: number;
-    captureStderr?: boolean;
-}
 export interface WorkflowStepChannelConfig {
     channel: 'discord' | 'slack' | 'telegram' | 'whatsapp' | 'email' | 'webhook';
     target: string;
@@ -891,7 +875,16 @@ export interface WorkflowStep {
     workDir?: string;
     kind?: WorkflowStepKind;
     mcp?: WorkflowStepMcpConfig;
-    cli?: WorkflowStepCliConfig;
+    /** CLI step config — inline shape (was the standalone WorkflowStepCliConfig
+     *  type that had zero external references; the field stays but the
+     *  named alias was dropped in 1.18.122). */
+    cli?: {
+        cmd: string;
+        args?: string[];
+        workDir?: string;
+        timeoutMs?: number;
+        captureStderr?: boolean;
+    };
     channel?: WorkflowStepChannelConfig;
     transform?: WorkflowStepTransformConfig;
     conditional?: WorkflowStepConditionalConfig;
@@ -1180,14 +1173,6 @@ export interface SessionRecord {
     lastUsedAt: number;
     userAgent?: string;
 }
-export interface ConfigRevision {
-    id?: number;
-    agentSlug: string;
-    fileName: string;
-    content: string;
-    changedBy?: string;
-    createdAt?: string;
-}
 export interface Lead {
     id?: number;
     agentSlug: string;
@@ -1202,16 +1187,6 @@ export interface Lead {
     createdAt?: string;
     updatedAt?: string;
 }
-export interface SequenceEnrollment {
-    id?: number;
-    leadId: number;
-    sequenceName: string;
-    currentStep: number;
-    status: 'active' | 'paused' | 'replied' | 'completed' | 'opted_out';
-    nextStepDueAt?: string;
-    startedAt?: string;
-    updatedAt?: string;
-}
 export interface Activity {
     id?: number;
     leadId?: number;
@@ -1222,40 +1197,6 @@ export interface Activity {
     templateUsed?: string;
     performedAt?: string;
 }
-export interface SuppressionEntry {
-    id?: number;
-    email: string;
-    reason: 'unsubscribe' | 'bounce' | 'manual' | 'complaint';
-    addedAt?: string;
-    addedBy?: string;
-}
-export interface ApprovalRequest {
-    id?: number;
-    agentSlug: string;
-    actionType: 'email_send' | 'sequence_start' | 'escalation';
-    summary: string;
-    detail?: Record<string, unknown>;
-    status: 'pending' | 'approved' | 'rejected';
-    requestedAt?: string;
-    resolvedAt?: string;
-    resolvedBy?: string;
-}
-export interface SfSyncRecord {
-    id?: number;
-    localTable: 'leads' | 'activities';
-    localId: number;
-    sfObjectType: 'Lead' | 'Contact' | 'Opportunity' | 'Task' | 'Event';
-    sfId: string;
-    syncDirection: 'push' | 'pull';
-    syncedAt?: string;
-    syncStatus: 'success' | 'error' | 'conflict';
-    errorMessage?: string;
-}
-export interface SfFieldMapping {
-    localField: string;
-    sfField: string;
-    direction: 'bidirectional' | 'push-only' | 'pull-only';
-}
 /** Supported v1 ingest formats detected by format-detector. */
 export type DetectedFormat = 'csv' | 'json' | 'jsonl' | 'markdown' | 'pdf' | 'email' | 'docx' | 'unknown';
 /** Operational mode for a source. */

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "clementine-agent",
-  "version": "1.18.120",
+  "version": "1.18.122",
   "description": "Clementine — Personal AI Assistant (TypeScript)",
   "type": "module",
   "main": "dist/index.js",
@@ -53,7 +53,6 @@
     "node-cron": "^3.0.3",
     "pdf-parse": "^1.1.1",
     "pino": "^9.6.0",
-    "twilio": "^5.5.0",
     "ws": "^8.19.0",
     "zod": "^4.3.6"
   },