clay-server 4.0.0-beta.8 → 4.0.0

package/lib/public/modules/app-messages.js

@@ -3,6 +3,7 @@
 // All dependencies are direct imports; no context injection needed.
 
 import { store } from './store.js';
+import { acknowledgeMessage, replayPendingMessages } from './message-delivery.js';
 import { getWs } from './ws-ref.js';
 
 // --- Leaf module imports ---
@@ -15,7 +16,7 @@ import { updateDmBadge, setMentionActive, renderUserStrip } from './sidebar-mate
 import { renderSidebarPresence } from './sidebar-presence.js';
 import { refreshMobileChatSheet } from './sidebar-mobile.js';
 import { renderMateSessionList, handleMateSearchResults, updateMateSidebarProfile } from './mate-sidebar.js';
-import { openHomeChat, handleHomeMateHistory, handleHomeMateDelta, handleHomeMateDone, handleHomeMateError, handleHomeMateSessionsState } from './home-mate-chat.js';
+import { openHomeChat, handleHomeMateHistory, handleHomeMateDelta, handleHomeMateSegment, handleHomeMateDone, handleHomeMateError, handleHomeMateSessionsState } from './home-mate-chat.js';
 import { handleHomeSurfaceState } from './home-surface.js';
 import { handleHomeMateMemoryState, handleHomeMateKnowledgeState } from './home-mate-settings.js';
 import { renderKnowledgeList, handleKnowledgeContent } from './mate-knowledge.js';
@@ -28,6 +29,7 @@ import { handleSessionActionMessage } from './session-actions.js';
 import { renderWorkerProposal, updateWorkerProposal } from './worker-proposal.js';
 import { handleInputSync, autoResize, builtinCommands, setScheduleBtnDisabled, sendShellResultToAgent } from './input.js';
 import { startThinking, appendThinking, stopThinking, resetThinkingGroup, createToolItem, updateToolExecuting, updateToolResult, markAllToolsDone, closeToolGroup, removeToolFromGroup, resetToolState, getTools, getPlanContent, setPlanContent, renderPlanBanner, renderPlanCard, getTodoTools, handleTodoWrite, handleTaskCreate, handleTaskUpdate, applyDeadSessionTodoCompaction, isPlanFilePath, enableMainInput, addTurnMeta, updateSubagentActivity, addSubagentToolEntry, markSubagentDone, initSubagentStop, updateSubagentProgress, updateSubagentTaskStatus, renderAskUserQuestion, markAskUserAnswered, renderPermissionRequest, markPermissionCancelled, markPermissionResolved, renderElicitationRequest, markElicitationResolved, renderUserDialogRequest, markUserDialogResolved, updateThinkingTokens } from './tools.js';
+import { finishThinkingTurn, resumeThinkingAfterReplay } from './thinking-lifecycle.js';
 import { showDoneNotification, playDoneSound, isNotifAlertEnabled, isNotifSoundEnabled } from './notifications.js';
 import { handleFsList, handleFsRead, handleFileChanged, handleDirChanged, handleFileHistory, handleGitDiff, handleFileAt, refreshIfOpen, getPendingNavigate, handleFsSearch, presentMarkdownEdit } from './filebrowser.js';
 import { beginMarkdownTurn, finishMarkdownTurn, markdownPathFromToolInput } from './markdown-live-edit.js';
@@ -41,6 +43,7 @@ import { tuiModalHandleTermOutput, tuiModalHandleTermResized, tuiModalHandleTerm
 import { updateTerminalList, handleContextSourcesState, updateEmailAccountList, updateEmailUnreadCounts, handleEmailTestResult, handleEmailAddResult, handleEmailRemoveResult } from './context-sources.js';
 import { refreshEmailSettings } from './user-settings.js';
 import { handleNotesList, handleNoteCreated, handleNoteUpdated, handleNoteDeleted, handleNoteWritten } from './sticky-notes.js';
+import { handleProjectLogsState, handleProjectLogEntry, handleProjectLogCommented, handleProjectLogCommentReviewed, handleProjectLogDeleted, handleProjectLogUpdated, handleProjectLogsError } from './project-logs.js';
 import { handleSkillInstalled, handleSkillUninstalled } from './skills.js';
 import { showRewindModal, onRewindComplete, setRewindMode, onRewindError, clearPendingRewindUuid, addRewindButton } from './rewind.js';
 import { checkAdminAccess } from './admin.js';
@@ -61,11 +64,12 @@ import { resolvePaneSession, resolveSwitchedVendor } from './pane-session.js';
 import { selectDefaultVendorForBlankSession } from './vendor-selection.js';
 import { getModelInfoUpdate, modelEntryValue, modelEntryMatches, handleModelSelectionResult, requestVendorModels } from './model-picker.js';
 import { getModelEffortLevels, accumulateUsage, updateUsagePanel, accumulateContext, updateContextPanel, renderCtxPopover, updateStatusPanel } from './app-panels.js';
-import { updateProjectList, resetClientState, showUpdateAvailable, handleRemoveProjectCheckResult, handleRemoveProjectResult, handleBrowseDirResult, handleAddProjectResult, handleCloneProgress } from './app-projects.js';
+import { updateProjectList, resetClientState, showUpdateAvailable, handleRemoveProjectCheckResult, handleRemoveProjectResult, handleBrowseDirResult, handleAddProjectResult, handleCloneProgress, finishProjectSessionActivation } from './app-projects.js';
 import { updateHistorySentinel, prependOlderHistory } from './app-header.js';
 import { hideHomeHub, showHomeHub } from './app-home-hub.js';
-import { handleToolsState, handleToolInstalled, handleToolRemoved, handleToolStorageResult, handleToolLlmResult, handleToolsError, handleToolControlRequest } from './home-tools.js';
+import { handleToolsState, handleToolInstalled, handleToolRemoved, handleToolStorageResult, handleToolLlmResult, handleToolsError, handleToolControlRequest, handleToolServerState, handleToolServerEvent, handleCapsuleGameSession } from './home-tools.js';
 import { handleHomeDockState } from './home-dock.js';
+import { handleToolFrameUrlState } from './home-tool-frame.js';
 import { enterDmMode, exitDmMode, handleMateCreatedInApp, updateMateIconStatus, appendDmMessage, showDmTypingIndicator, buildMateInterviewPrompt } from './app-dm.js';
 import { handleRateLimitEvent, updateRateLimitUsage, addScheduledMessageBubble, removeScheduledMessageBubble, handleFastModeState } from './app-rate-limit.js';
 import { handleRemoteCursorMove, handleRemoteCursorLeave, handleRemoteSelection, clearRemoteCursors } from './app-cursors.js';
@@ -73,6 +77,7 @@ import { showLoopBanner, updateLoopBanner, updateLoopInputVisibility, showRalphA
 import { showDebateSticky, showDebateConcludeConfirm, showDebateUserFloor, exitDebateFloorMode, exitDebateConcludeMode, exitDebateEndedMode, updateDebateRound, renderDebateUserFloorDone } from './app-debate-ui.js';
 import { handleSkillInstallWs } from './app-skills-install.js';
 import { handleNotificationsState, handleNotificationCreated, handleNotificationDismissed, handleNotificationDismissedAll, showUpdateBanner } from './app-notifications.js';
+import { handleUpdateSnoozed } from './update-snooze.js';
 import { autoStartLoginIfNeeded, handleVendorLoginReady, handleVendorLoginState, handleVendorLoginError, handleAuthRefreshed } from './vendor-login.js';
 import { handleDebatePreparing, handleDebateBriefReady, renderDebateBriefReady, handleDebateStarted, renderDebateStarted, handleDebateTurn, handleDebateActivity, handleDebateStream, handleDebateTurnDone, handleDebateCommentQueued, handleDebateCommentInjected, renderDebateCommentInjected, handleDebateResumed, handleDebateEnded, renderDebateEnded, handleDebateError, isDebateActive, renderMcpDebateProposal, renderDebateUserResume } from './debate.js';
 import { handleMentionStart, handleMentionActivity, handleMentionStream, handleMentionDone, handleMentionError, renderMentionUser, renderMentionResponse, renderUserMention } from './mention.js';
@@ -160,6 +165,20 @@ export function processMessage(msg) {
     }
 
     switch (msg.type) {
+      case "message_ack":
+        var acknowledgedEl = msg.clientMessageId
+          ? messagesEl.querySelector('[data-client-message-id="' + msg.clientMessageId + '"]')
+          : null;
+        acknowledgeMessage(msg.clientMessageId);
+        if (!acknowledgedEl && msg.message) {
+          addUserMessage(msg.message.text, msg.message.images || null, msg.message.pastes || null, msg.message.from, msg.message.fromName);
+          var acknowledgedUsers = messagesEl.querySelectorAll(".msg-user");
+          if (acknowledgedUsers.length > 0) {
+            acknowledgedUsers[acknowledgedUsers.length - 1].dataset.clientMessageId = msg.clientMessageId;
+          }
+        }
+        break;
+
       case "history_meta":
         store.set({ historyFrom: msg.from, historyTotal: msg.total, replayingHistory: true });
         updateHistorySentinel();
@@ -171,6 +190,7 @@ export function processMessage(msg) {
 
       case "history_done":
         store.set({ replayingHistory: false });
+        resumeThinkingAfterReplay(store.get('sessionIsProcessing'));
         // Batched syntax highlight + mermaid pass for the entire replayed
         // transcript. Per-message highlights are skipped during replay
         // (see markdown.js) to avoid cascading reflows that the sticky-
@@ -293,7 +313,7 @@ export function processMessage(msg) {
         detachTuiView();
         store.set({ projectName: msg.project || msg.cwd, vendorInfo: msg.vendors || {} });
         if (msg.cwd) store.set({ cwd: msg.cwd });
-        if (msg.slug) store.set({ currentSlug: msg.slug });
+        if (msg.slug) store.set({ currentSlug: msg.slug, activeProjectSlug: msg.slug });
         try { var _is = store.snap(); localStorage.setItem("clay-project-name-" + (_is.currentSlug || "default"), _is.projectName); } catch (e) {}
         // In mate DM, keep title as mate name and re-apply mate color
         if (store.get('dmMode') && store.get('dmTargetUser') && store.get('dmTargetUser').isMate) {
@@ -330,7 +350,9 @@ export function processMessage(msg) {
         break;
 
       case "update_available":
-        // In multi-user mode, only show update UI to admins
+        // The server already refuses to send this frame to anyone who is not
+        // admin-grade, so this check is defence in depth for the UI, not the
+        // access control.
         if (store.get('isMultiUserMode')) {
           checkAdminAccess().then(function (isAdmin) {
             if (!isAdmin) return;
@@ -343,6 +365,10 @@ export function processMessage(msg) {
         }
         break;
 
+      case "update_snoozed":
+        handleUpdateSnoozed(msg);
+        break;
+
       case "up_to_date":
         var utdBtn = document.getElementById("settings-update-check");
         if (utdBtn) {
@@ -619,6 +645,26 @@ export function processMessage(msg) {
         handleToolControlRequest(msg);
         break;
 
+      case "tool_server_state":
+        handleToolServerState(msg);
+        break;
+
+      case "tool_server_event":
+        handleToolServerEvent(msg);
+        break;
+
+      case "tool_frame_url_state":
+        handleToolFrameUrlState(msg);
+        break;
+
+      case "capsule_game_session":
+        handleCapsuleGameSession(msg);
+        break;
+
+      case "home_mate_segment":
+        handleHomeMateSegment(msg);
+        break;
+
       case "input_sync":
         if (!store.get('dmMode')) handleInputSync(msg.text);
         break;
@@ -718,7 +764,6 @@ export function processMessage(msg) {
         break;
 
       case "session_switched":
-        hideHomeHub();
         closeWhatsNewArticle();
         // Save draft from outgoing session
         var _prevSid = store.get('activeSessionId');
@@ -737,6 +782,7 @@ export function processMessage(msg) {
           ? msg.runtimeTerminalId
           : (typeof msg.terminalId === "number" ? msg.terminalId : null);
         store.set({ activeSessionId: msg.id, cliSessionId: msg.cliSessionId || null, currentModel: msg.model || "", currentEffort: msg.effort || store.get('currentEffort'), vendorCapabilities: msg.capabilities || {}, sessionIsProcessing: !!msg.isProcessing, activeSessionMode: _effectiveMode, activeTerminalId: _effectiveTerminalId, sessionHasHistory: !!msg.hasHistory, sessionVendorBound: !!msg.vendor || !!msg.hasHistory, sessionFullAccess: msg.permissionMode === "bypassPermissions", currentMode: msg.permissionMode || store.get('currentMode') });
+        replayPendingMessages(msg.id);
         // TUI sessions swap the chat UI for an embedded xterm running
         // `claude` inside a real PTY. Mount or tear down before the rest of
         // the chat-side bookkeeping runs so we don't waste work on hidden DOM.
@@ -815,6 +861,7 @@ export function processMessage(msg) {
         // Reload survival: a restored active session that is a split-group
         // member reopens its group (no-op when a split is already open).
         maybeRestoreSplitGroup();
+        if (finishProjectSessionActivation()) hideHomeHub();
         break;
 
       case "session_full_access_changed":
@@ -858,6 +905,10 @@ export function processMessage(msg) {
         } else {
           addUserMessage(msg.text, msg.images || null, msg.pastes || null, msg.from, msg.fromName, msg.delegated ? msg : null);
         }
+        if (msg.clientMessageId) {
+          var replayedUsers = messagesEl.querySelectorAll(".msg-user");
+          if (replayedUsers.length > 0) replayedUsers[replayedUsers.length - 1].dataset.clientMessageId = msg.clientMessageId;
+        }
         // Split Worker pane: a delegated instruction starts (or replays into) a
         // driven turn; surface the composer notice. Cleared on "done".
         if (msg.delegated) showWorkerDelegationNotice(msg.delegatedByTitle || null);
@@ -979,7 +1030,6 @@ export function processMessage(msg) {
         if (typeof msg.text !== "string") break;
         removeMatePreThinking();
         stopThinking();
-        resetThinkingGroup();
         setActivity(null);
         appendDelta(msg.text);
         break;
@@ -1179,7 +1229,7 @@ export function processMessage(msg) {
         // were missed by the client).
         removeMatePreThinking();
         setActivity(null);
-        stopThinking();
+        finishThinkingTurn();
         markAllToolsDone();
         closeToolGroup();
         clearAllImageGenerationProgress();
@@ -1199,7 +1249,7 @@ export function processMessage(msg) {
       case "done":
         removeMatePreThinking();
         setActivity(null);
-        stopThinking();
+        finishThinkingTurn();
         hideWorkerDelegationNotice();
         markAllToolsDone();
         closeToolGroup();
@@ -1222,6 +1272,7 @@ export function processMessage(msg) {
       case "error":
         removeMatePreThinking();
         setActivity(null);
+        finishThinkingTurn();
         addSystemMessage(msg.text, true);
         break;
 
@@ -1273,13 +1324,14 @@ export function processMessage(msg) {
       case "process_conflict":
         removeMatePreThinking();
         setActivity(null);
+        finishThinkingTurn();
         addConflictMessage(msg);
         break;
 
       case "session_writer_conflict":
         removeMatePreThinking();
         setActivity(null);
-        stopThinking();
+        finishThinkingTurn();
         markAllToolsDone();
         closeToolGroup();
         addSystemMessage(msg.text || "This session is already open in another process.", true);
@@ -1288,13 +1340,14 @@ export function processMessage(msg) {
       case "context_overflow":
         removeMatePreThinking();
         setActivity(null);
+        finishThinkingTurn();
         addContextOverflowMessage(msg);
         break;
 
       case "auth_required":
         removeMatePreThinking();
         setActivity(null);
-        stopThinking();
+        finishThinkingTurn();
         markAllToolsDone();
         closeToolGroup();
         appendDelta((msg.text || "Authentication required.") + "\n");
@@ -1567,6 +1620,34 @@ export function processMessage(msg) {
         handleNoteDeleted(msg);
         break;
 
+      case "project_logs_state":
+        handleProjectLogsState(msg);
+        break;
+
+      case "project_log_entry":
+        handleProjectLogEntry(msg);
+        break;
+
+      case "project_log_commented":
+        handleProjectLogCommented(msg);
+        break;
+
+      case "project_log_comment_reviewed":
+        handleProjectLogCommentReviewed(msg);
+        break;
+
+      case "project_log_deleted":
+        handleProjectLogDeleted(msg);
+        break;
+
+      case "project_log_updated":
+        handleProjectLogUpdated(msg);
+        break;
+
+      case "project_logs_error":
+        handleProjectLogsError(msg);
+        break;
+
       case "process_stats":
         updateStatusPanel(msg);
         updateSettingsStats(msg);

package/lib/public/modules/app-misc.js

@@ -2,10 +2,10 @@
 // Extracted from app.js (PR-34)
 
 import { refreshIcons, iconHtml } from './icons.js';
-import { escapeHtml, copyToClipboard } from './utils.js';
 import { getWs } from './ws-ref.js';
 import { updateBrowserTabList } from './context-sources.js';
 import { setExtensionConnected } from './mcp-ui.js';
+import { initPasteModal } from './paste-modal.js';
 
 // --- Module-owned state ---
 var confirmCallback = null;
@@ -44,6 +44,7 @@ export function flushPendingExtMessages() {
 }
 
 export function initMisc() {
+  initPasteModal();
   // --- Confirm modal listeners ---
   var confirmModal = document.getElementById("confirm-modal");
   var confirmOk = document.getElementById("confirm-ok");
@@ -258,19 +259,6 @@ export function closeImageModal() {
   if (modal) modal.classList.add("hidden");
 }
 
-export function showPasteModal(text) {
-  var modal = document.getElementById("paste-modal");
-  var body = document.getElementById("paste-modal-body");
-  if (!modal || !body) return;
-  body.textContent = text;
-  modal.classList.remove("hidden");
-}
-
-export function closePasteModal() {
-  var modal = document.getElementById("paste-modal");
-  if (modal) modal.classList.add("hidden");
-}
-
 export function showConfirm(text, onConfirm, okLabel, destructive) {
   var confirmText = document.getElementById("confirm-text");
   var confirmOk = document.getElementById("confirm-ok");

package/lib/public/modules/app-notifications.js

@@ -14,6 +14,7 @@ import { openTuiModal } from './tui-attention.js';
 import { requestVendorLogin } from './vendor-login.js';
 import { startUrgentBlink, stopUrgentBlink } from './app-favicon.js';
 import { playDoneSound, isNotifSoundEnabled } from './notifications.js';
+import { attachSnoozeControl, setSnoozeBannerRemover } from './update-snooze.js';
 var notifications = [];
 var unreadCount = 0;
 var bannerContainer = null;
@@ -56,6 +57,10 @@ export function initAppNotifications() {
   bellBtn = document.getElementById("notif-center-btn");
   badgeEl = document.getElementById("notif-center-badge");
 
+  // Banner teardown lives here (exit animation, clear-all sync), so the
+  // snooze module borrows it rather than importing this module back.
+  setSnoozeBannerRemover(removeBanner);
+
   // Split panes are secondary clients inside the parent shell. They keep
   // notification state in sync, but the parent owns the single visible
   // banner surface for the whole split view.
@@ -708,13 +713,11 @@ export function showUpdateBanner(msg) {
   banner.setAttribute("data-notif-id", "_update");
   banner.setAttribute("data-update-version", msg.version);
 
-  var actionsHtml = '';
-  if (!isHeadless) {
-    actionsHtml =
-      '<div class="notif-banner-actions">' +
-        '<button class="notif-banner-update-now">Update now</button>' +
-      '</div>';
-  }
+  // Headless installs update from the shell, so they get no install button —
+  // but they still get the action row, because Snooze applies either way.
+  var actionsHtml = '<div class="notif-banner-actions">' +
+    (isHeadless ? '' : '<button class="notif-banner-update-now">Update now</button>') +
+    '</div>';
 
   banner.innerHTML =
     '<div class="notif-banner-icon"><img src="/clay-studio-symbol.png" width="32" height="32" alt="Clay Studio"></div>' +
@@ -729,6 +732,7 @@ export function showUpdateBanner(msg) {
     '<button class="notif-banner-close">' + iconHtml("x") + '</button>';
 
   bannerContainer.appendChild(banner);
+  attachSnoozeControl(banner.querySelector(".notif-banner-actions"));
   refreshIcons();
 
   requestAnimationFrame(function () {

package/lib/public/modules/app-panels.js

@@ -91,7 +91,7 @@ var MODE_FULL_AUTO = { value: "bypassPermissions", label: "Full auto" };
 var EFFORT_LEVELS = ["low", "medium", "high", "xhigh", "max"];
 var EFFORT_LEVELS_BY_VENDOR = {
   claude: ["low", "medium", "high", "xhigh", "max"],
-  codex: ["minimal", "low", "medium", "high", "xhigh"],
+  codex: ["low", "medium", "high", "xhigh", "max"],
   antigravity: [],
   opencode: [],
   kiro: ["low", "medium", "high", "xhigh", "max"],
@@ -115,7 +115,8 @@ var CODEX_WEBSEARCH_OPTIONS = [
 var KNOWN_CONTEXT_WINDOWS = {
   "opus-4-6": 1000000,
   "claude-sonnet-4": 1000000,
-  "gpt-5.6": 272000,
+  "gpt-6-astra": 1050000,
+  "gpt-5.6": 1050000,
   "gpt-5.5": 1048576,
   "gpt-5.4": 1048576,
   "gpt-5.3": 1048576,

package/lib/public/modules/app-projects.js

@@ -19,7 +19,7 @@ import { exitDmMode } from './app-dm.js';
 import { isHomeHubVisible, hideHomeHub, showHomeHub } from './app-home-hub.js';
 import { closeArticle as closeWhatsNewArticle } from './whats-new-article.js';
 import { resetFileBrowser } from './filebrowser.js';
-import { closeArchive } from './sticky-notes.js';
+import { closeNotesBrowser } from './sticky-notes-browser.js';
 import { hideMemory } from './mate-memory.js';
 import { isSchedulerOpen, closeScheduler, resetScheduler } from './scheduler.js';
 import { connect, cancelReconnect, setStatus } from './app-connection.js';
@@ -34,6 +34,10 @@ import { resetRateLimitState } from './app-rate-limit.js';
 import { closeSessionInfoPopover } from './app-header.js';
 import { resetDebateState } from './debate.js';
 import { removeDebateBottomBar } from './app-debate-ui.js';
+import { closeProjectSettings } from './project-settings.js';
+import { chooseProjectAfterRemoval } from './project-removal-target.js';
+import { isProjectActivated, isProjectActivationPending, isProjectContextConnected, projectWsPath } from './project-activation.js';
+import { rememberHomePrimarySurface } from './home-surface.js';
 
 // --- Module-owned state ---
 var cachedProjects = [];
@@ -415,43 +419,76 @@ export function switchProject(slug) {
   if (!slug) return;
   document.cookie = "clay_last_project=" + encodeURIComponent(slug) + "; Path=/; SameSite=Strict; Max-Age=31536000";
   var st = store.snap();
+  var ws = getWs();
+  var targetWsPath = projectWsPath(slug);
+  var homeVisible = isHomeHubVisible();
+  var alreadyInProject = isProjectActivated(st, slug, ws);
   var wasDm = st.dmMode;
   var wasMate = st.dmMode && st.dmTargetUser && st.dmTargetUser.isMate;
   if (st.dmMode) exitDmMode(wasMate);
   closeWhatsNewArticle();
-  if (isHomeHubVisible()) {
+  if (homeVisible && alreadyInProject) {
+    rememberHomePrimarySurface("project", slug);
     hideHomeHub();
-    if (slug === store.get('currentSlug')) {
-      if (document.documentElement.classList.contains("pwa-standalone")) {
-        history.replaceState(null, "", "/p/" + slug + "/");
-      } else {
-        history.pushState(null, "", "/p/" + slug + "/");
-      }
-      return;
+    if (document.documentElement.classList.contains("pwa-standalone")) {
+      history.replaceState(null, "", "/p/" + slug + "/");
+    } else {
+      history.pushState(null, "", "/p/" + slug + "/");
     }
+    return;
   }
-  if (slug === store.get('currentSlug')) {
-    var ws = getWs();
+  if (alreadyInProject) {
     if (wasDm && ws && ws.readyState === 1) {
       ws.send(JSON.stringify({ type: "switch_session", id: store.get('activeSessionId') }));
     }
     return;
   }
+  if (homeVisible) store.set({ pendingHomeProjectSlug: slug });
+  if (isProjectActivationPending(store.snap(), slug, ws)) return;
   resetFileBrowser();
-  closeArchive();
+  closeNotesBrowser();
   hideMemory();
   if (isSchedulerOpen()) closeScheduler();
   resetScheduler(slug);
   store.set({ currentSlug: slug });
   store.set({ basePath: "/p/" + slug + "/" });
-  store.set({ wsPath: "/p/" + slug + "/ws" });
+  store.set({ wsPath: targetWsPath });
+  if (!homeVisible) {
+    if (document.documentElement.classList.contains("pwa-standalone")) {
+      history.replaceState(null, "", "/p/" + slug + "/");
+    } else {
+      history.pushState(null, "", "/p/" + slug + "/");
+    }
+  }
+  resetClientState();
+  connect();
+}
+
+export function completePendingProjectActivation() {
+  var slug = store.get('pendingHomeProjectSlug');
+  if (!slug || !isProjectActivated(store.snap(), slug, getWs())) return false;
+  store.set({ pendingHomeProjectSlug: null });
+  rememberHomePrimarySurface("project", slug);
   if (document.documentElement.classList.contains("pwa-standalone")) {
     history.replaceState(null, "", "/p/" + slug + "/");
   } else {
     history.pushState(null, "", "/p/" + slug + "/");
   }
-  resetClientState();
-  connect();
+  return true;
+}
+
+export function confirmCurrentProjectSessionActivation() {
+  var slug = store.get('activeProjectSlug');
+  if (!slug || !isProjectContextConnected(store.snap(), slug, getWs())) return false;
+  store.set({ sessionActivatedProjectSlug: slug });
+  return true;
+}
+
+export function finishProjectSessionActivation() {
+  var confirmed = confirmCurrentProjectSessionActivation();
+  if (!confirmed) return false;
+  if (!store.get('pendingHomeProjectSlug')) return true;
+  return completePendingProjectActivation();
 }
 
 export function showUpdateAvailable(msg) {
@@ -572,9 +609,10 @@ export function handleRemoveProjectResult(msg) {
     var currentSlug = store.get('currentSlug');
     if (msg.slug === currentSlug) {
       var isWorktree = msg.slug.indexOf("--") !== -1;
-      var parentSlug = isWorktree ? msg.slug.split("--")[0] : null;
+      var targetSlug = chooseProjectAfterRemoval(cachedProjects, msg.slug);
 
       showToast(isWorktree ? "Worktree removed" : "Project removed", "success");
+      closeProjectSettings();
 
       // Suppress disconnect overlay and reconnect by detaching the WS
       var ws = getWs();
@@ -602,8 +640,8 @@ export function handleRemoveProjectResult(msg) {
       renderProjectList();
       resetClientState();
 
-      if (parentSlug) {
-        switchProject(parentSlug);
+      if (targetSlug) {
+        switchProject(targetSlug);
       } else {
         showHomeHub();
       }

package/lib/public/modules/app-rendering.js

@@ -111,6 +111,7 @@ export function finalizeAssistantBlock() {
 
 export function showClaudePreThinking() {
   if (getChatLayout() !== "channel") return;
+  removeMatePreThinking();
   var vendor = store.get('currentVendor') || "claude";
   var vendorAvatar = VENDOR_AVATARS[vendor] || VENDOR_AVATARS.claude;
   var vendorName = VENDOR_NAMES[vendor] || VENDOR_NAMES.claude;

package/lib/public/modules/capsule-preference.js

@@ -0,0 +1,44 @@
+import { store } from './store.js';
+import { requestTools } from './home-tools.js';
+import { closeHomeDock } from './home-dock.js';
+import { showToast } from './utils.js';
+
+function applyCapsulesEnabled(enabled, refreshTools) {
+  var want = enabled === true;
+  store.set({ capsulesEnabled: want, capsulesPreferenceLoaded: true });
+  if (document.body) document.body.classList.toggle('capsules-disabled', !want);
+  if (!want && store.get('dockOpen') === true) closeHomeDock();
+  if (refreshTools !== false) requestTools();
+}
+
+export function initCapsulePreference() {
+  var toggle = document.getElementById('us-capsules-enabled');
+  if (!toggle) return;
+  toggle.addEventListener('change', function () {
+    var previous = store.get('capsulesEnabled') === true;
+    var want = this.checked === true;
+    applyCapsulesEnabled(want, false);
+    fetch('/api/user/capsules-enabled', {
+      method: 'PUT',
+      headers: { 'Content-Type': 'application/json' },
+      body: JSON.stringify({ enabled: want }),
+    }).then(function (response) {
+      if (!response.ok) throw new Error('Could not save the Capsules preference.');
+      return response.json();
+    }).then(function (data) {
+      applyCapsulesEnabled(data.capsulesEnabled === true, true);
+      showToast(data.capsulesEnabled ? 'Experimental Capsules enabled' : 'Experimental Capsules disabled');
+    }).catch(function () {
+      toggle.checked = previous;
+      applyCapsulesEnabled(previous, true);
+      showToast('Could not save the Capsules preference.', 'error');
+    });
+  });
+}
+
+export function syncCapsulePreference(enabled) {
+  var want = enabled === true;
+  var toggle = document.getElementById('us-capsules-enabled');
+  if (toggle) toggle.checked = want;
+  applyCapsulesEnabled(want, true);
+}

package/lib/public/modules/chat-bubble-renderer.js

@@ -105,7 +105,7 @@ export function addAssistantCopyHandler(row, rawText) {
   }
 
   row.addEventListener("click", function (event) {
-    if (event.target.closest("a, pre, code")) return;
+    if (event.target.closest("a, button, pre, code")) return;
     var selection = window.getSelection();
     if (selection && selection.toString().length > 0) return;
     if (!primed) {

package/lib/public/modules/clay-log-links.js

@@ -0,0 +1,70 @@
+export function parseClayLogReferences(text) {
+  var pattern = /\[clayos\/(log:[A-Za-z0-9_-]{24})(?:\s+[\u2014-]\s+([^\]\n]{1,80}))?\]|(^|[^A-Za-z0-9_/:])(log:[A-Za-z0-9_-]{24})(?![A-Za-z0-9_-])/g;
+  var results = [];
+  var match;
+  while ((match = pattern.exec(text || ""))) {
+    results.push({
+      start: match.index,
+      end: pattern.lastIndex,
+      prefix: match[3] || "",
+      ref: match[1] || match[4],
+      label: match[2] ? match[2].trim() : "",
+    });
+  }
+  return results;
+}
+
+export function isExactClayLogReference(text) {
+  return /^log:[A-Za-z0-9_-]{24}$/.test((text || "").trim());
+}
+
+function createLogLink(ref, labelText) {
+  var button = document.createElement("button");
+  button.type = "button";
+  button.className = "clayos-log-link";
+  button.contentEditable = "false";
+  button.dataset.logRef = ref;
+  button.setAttribute("aria-label", "Open Project Log" + (labelText ? " " + labelText : ""));
+  var label = document.createElement("span");
+  label.textContent = "Log";
+  button.appendChild(label);
+  if (labelText) {
+    var meta = document.createElement("small");
+    meta.textContent = labelText;
+    button.appendChild(meta);
+  }
+  return button;
+}
+
+export function enhanceClayLogLinks(root) {
+  var codeNodes = root.querySelectorAll("code");
+  for (var codeIndex = 0; codeIndex < codeNodes.length; codeIndex++) {
+    var code = codeNodes[codeIndex];
+    var codeText = (code.textContent || "").trim();
+    if (code.closest("pre") || !isExactClayLogReference(codeText)) continue;
+    code.parentNode.replaceChild(createLogLink(codeText, ""), code);
+  }
+
+  var walker = document.createTreeWalker(root, NodeFilter.SHOW_TEXT);
+  var nodes = [];
+  var node;
+  while ((node = walker.nextNode())) {
+    if (!node.parentElement || node.parentElement.closest("code, pre, a, button")) continue;
+    if (parseClayLogReferences(node.nodeValue).length) nodes.push(node);
+  }
+  for (var i = 0; i < nodes.length; i++) {
+    var text = nodes[i].nodeValue || "";
+    var matches = parseClayLogReferences(text);
+    var fragment = document.createDocumentFragment();
+    var offset = 0;
+    for (var j = 0; j < matches.length; j++) {
+      var match = matches[j];
+      fragment.appendChild(document.createTextNode(text.slice(offset, match.start)));
+      if (match.prefix) fragment.appendChild(document.createTextNode(match.prefix));
+      fragment.appendChild(createLogLink(match.ref, match.label));
+      offset = match.end;
+    }
+    fragment.appendChild(document.createTextNode(text.slice(offset)));
+    nodes[i].parentNode.replaceChild(fragment, nodes[i]);
+  }
+}