clawvault 2.6.4 → 2.6.5

package/dist/{chunk-ECRZL5XR.js → chunk-2GKPENIR.js}

@@ -1,10 +1,11 @@
 import {
-  loadVaultQmdConfig
-} from "./chunk-WIOLLGAD.js";
+  loadVaultQmdConfig,
+  recoverQmdEmbeddingIfNeeded,
+  runCrashSafeQmdEmbed
+} from "./chunk-FBITHIZF.js";
 import {
   QmdUnavailableError,
-  hasQmd,
-  qmdEmbed
+  hasQmd
 } from "./chunk-5PJ4STIC.js";
 import {
   resolveVaultPath
@@ -18,12 +19,27 @@ async function embedCommand(options = {}) {
   const vaultPath = resolveVaultPath({ explicitPath: options.vaultPath });
   const qmdConfig = loadVaultQmdConfig(vaultPath);
   const startedAt = (/* @__PURE__ */ new Date()).toISOString();
+  const recovery = recoverQmdEmbeddingIfNeeded({
+    vaultPath,
+    collection: qmdConfig.qmdCollection,
+    rootPath: qmdConfig.qmdRoot,
+    mode: "marker-or-empty",
+    onLog: options.quiet ? void 0 : (message) => console.log(message)
+  });
+  if (!options.quiet && recovery.recovered) {
+    const reasonLabel = recovery.reason === "interrupted_wal" ? "interrupted run" : "empty vector state";
+    console.log(`\u2713 Automatic qmd recovery completed (${reasonLabel}).`);
+  }
   if (!options.quiet) {
     console.log(
       `Embedding pending documents for collection "${qmdConfig.qmdCollection}" (root: ${qmdConfig.qmdRoot})...`
     );
   }
-  qmdEmbed(qmdConfig.qmdCollection);
+  runCrashSafeQmdEmbed({
+    vaultPath,
+    collection: qmdConfig.qmdCollection,
+    rootPath: qmdConfig.qmdRoot
+  });
   const finishedAt = (/* @__PURE__ */ new Date()).toISOString();
   if (!options.quiet) {
     console.log(`\u2713 Embedding complete for "${qmdConfig.qmdCollection}"`);

package/dist/{chunk-ZZA73MFY.js → chunk-33DOSHTA.js}

@@ -1,11 +1,123 @@
 // src/lib/memory-graph.ts
 import * as fs from "fs";
-import * as path from "path";
+import * as path2 from "path";
 import matter from "gray-matter";
 import { glob } from "glob";
+
+// src/lib/wiki-links.ts
+import * as path from "path";
+function stripInlineCode(line) {
+  let result = "";
+  let cursor = 0;
+  while (cursor < line.length) {
+    if (line[cursor] !== "`") {
+      result += line[cursor];
+      cursor += 1;
+      continue;
+    }
+    let fenceLength = 1;
+    while (cursor + fenceLength < line.length && line[cursor + fenceLength] === "`") {
+      fenceLength += 1;
+    }
+    const fence = "`".repeat(fenceLength);
+    const closeIndex = line.indexOf(fence, cursor + fenceLength);
+    if (closeIndex === -1) {
+      result += fence;
+      cursor += fenceLength;
+      continue;
+    }
+    cursor = closeIndex + fenceLength;
+  }
+  return result;
+}
+function parseFence(line) {
+  const match = line.match(/^[ \t]{0,3}(`{3,}|~{3,})/);
+  if (!match) return null;
+  const marker = match[1][0];
+  if (marker !== "`" && marker !== "~") return null;
+  return { marker, length: match[1].length };
+}
+function isFenceClose(line, fence) {
+  const re = new RegExp(`^[ \\t]{0,3}${fence.marker}{${fence.length},}[ \\t]*$`);
+  return re.test(line);
+}
+function stripMarkdownCode(markdownContent) {
+  const lines = markdownContent.split("\n");
+  const visibleLines = [];
+  let activeFence = null;
+  for (const line of lines) {
+    if (activeFence) {
+      if (isFenceClose(line, activeFence)) {
+        activeFence = null;
+      }
+      visibleLines.push("");
+      continue;
+    }
+    const openingFence = parseFence(line);
+    if (openingFence) {
+      activeFence = openingFence;
+      visibleLines.push("");
+      continue;
+    }
+    if (/^(?: {4}|\t)/.test(line)) {
+      visibleLines.push("");
+      continue;
+    }
+    visibleLines.push(stripInlineCode(line));
+  }
+  return visibleLines.join("\n");
+}
+function extractRawWikiLinks(markdownContent) {
+  const content = stripMarkdownCode(markdownContent);
+  const links = [];
+  let cursor = 0;
+  while (cursor < content.length) {
+    const start = content.indexOf("[[", cursor);
+    if (start === -1) break;
+    const end = content.indexOf("]]", start + 2);
+    if (end === -1) break;
+    const candidate = content.slice(start + 2, end).trim();
+    if (candidate) {
+      links.push(candidate);
+    }
+    cursor = end + 2;
+  }
+  return links;
+}
+function normalizeWikiLinkTarget(rawTarget) {
+  let value = rawTarget.trim();
+  if (!value) return "";
+  if (value.startsWith("[[") && value.endsWith("]]")) {
+    value = value.slice(2, -2).trim();
+  }
+  const pipeIndex = value.indexOf("|");
+  if (pipeIndex >= 0) {
+    value = value.slice(0, pipeIndex);
+  }
+  if (value.startsWith("#")) {
+    return "";
+  }
+  const hashIndex = value.indexOf("#");
+  if (hashIndex >= 0) {
+    value = value.slice(0, hashIndex);
+  }
+  value = value.trim().replace(/\\/g, "/").replace(/^\/+/, "");
+  if (!value) return "";
+  value = value.split("/").map((segment) => segment.trim()).join("/");
+  const normalizedPath = path.posix.normalize(value);
+  if (!normalizedPath || normalizedPath === ".") {
+    return "";
+  }
+  value = normalizedPath;
+  if (value.toLowerCase().endsWith(".md")) {
+    value = value.slice(0, -3);
+  }
+  return value.trim();
+}
+
+// src/lib/memory-graph.ts
 var MEMORY_GRAPH_SCHEMA_VERSION = 1;
-var GRAPH_INDEX_RELATIVE_PATH = path.join(".clawvault", "graph-index.json");
-var WIKI_LINK_RE = /\[\[([^\]]+)\]\]/g;
+var GRAPH_INDEX_RELATIVE_PATH = path2.join(".clawvault", "graph-index.json");
 var HASH_TAG_RE = /(^|\s)#([\w-]+)/g;
 var FRONTMATTER_RELATION_FIELDS = [
   "related",
@@ -19,7 +131,7 @@ var FRONTMATTER_RELATION_FIELDS = [
   "links"
 ];
 function normalizeRelativePath(value) {
-  return value.split(path.sep).join("/").replace(/^\.\//, "").replace(/^\/+/, "");
+  return value.split(path2.sep).join("/").replace(/^\.\//, "").replace(/^\/+/, "");
 }
 function toNoteKey(relativePath) {
   const normalized = normalizeRelativePath(relativePath);
@@ -57,31 +169,14 @@ function inferNodeType(relativePath, frontmatter) {
   return "note";
 }
 function ensureClawvaultDir(vaultPath) {
-  const dirPath = path.join(vaultPath, ".clawvault");
+  const dirPath = path2.join(vaultPath, ".clawvault");
   if (!fs.existsSync(dirPath)) {
     fs.mkdirSync(dirPath, { recursive: true });
   }
   return dirPath;
 }
 function getGraphIndexPath(vaultPath) {
-  return path.join(vaultPath, GRAPH_INDEX_RELATIVE_PATH);
-}
-function normalizeWikiTarget(target) {
-  let value = target.trim();
-  if (!value) return "";
-  const pipeIndex = value.indexOf("|");
-  if (pipeIndex >= 0) {
-    value = value.slice(0, pipeIndex);
-  }
-  const hashIndex = value.indexOf("#");
-  if (hashIndex >= 0) {
-    value = value.slice(0, hashIndex);
-  }
-  value = value.trim().replace(/\\/g, "/").replace(/^\.\//, "").replace(/^\/+/, "");
-  if (value.toLowerCase().endsWith(".md")) {
-    value = value.slice(0, -3);
-  }
-  return value.trim();
+  return path2.join(vaultPath, GRAPH_INDEX_RELATIVE_PATH);
 }
 function collectTags(frontmatter, markdownContent) {
   const tags = /* @__PURE__ */ new Set();
@@ -105,14 +200,15 @@ function collectTags(frontmatter, markdownContent) {
 }
 function extractWikiTargets(markdownContent) {
   const targets = /* @__PURE__ */ new Set();
-  for (const match of markdownContent.matchAll(WIKI_LINK_RE)) {
-    const candidate = match[1];
-    if (!candidate) continue;
+  for (const candidate of extractRawWikiLinks(markdownContent)) {
     const normalized = normalizeWikiTarget(candidate);
     if (normalized) targets.add(normalized);
   }
   return [...targets];
 }
+function normalizeWikiTarget(target) {
+  return normalizeWikiLinkTarget(target);
+}
 function toStringArray(value) {
   if (typeof value === "string") {
     return value.split(",").map((entry) => entry.trim()).filter(Boolean);
@@ -150,15 +246,57 @@ function buildNoteRegistry(relativePaths) {
   }
   return { byLowerPath, byLowerBasename };
 }
-function resolveTargetNodeId(rawTarget, registry) {
+function normalizeLookupPath(candidate) {
+  const normalized = normalizeWikiTarget(candidate);
+  if (!normalized) return "";
+  const resolved = path2.posix.normalize(normalized).replace(/^\/+/, "");
+  if (!resolved || resolved === "." || resolved.startsWith("../")) {
+    return "";
+  }
+  return resolved;
+}
+function buildTargetLookupCandidates(target, sourceNoteKey) {
+  const candidates = [];
+  const sourceDir = path2.posix.dirname(sourceNoteKey);
+  const hasSourceDir = sourceDir !== ".";
+  const isRelativeTarget = target.startsWith("./") || target.startsWith("../");
+  const addCandidate = (candidate) => {
+    const normalized = normalizeLookupPath(candidate);
+    if (!normalized || candidates.includes(normalized)) return;
+    candidates.push(normalized);
+  };
+  if (isRelativeTarget) {
+    if (hasSourceDir) {
+      addCandidate(path2.posix.join(sourceDir, target));
+    } else {
+      addCandidate(target);
+    }
+    if (target.startsWith("./")) {
+      addCandidate(target.slice(2));
+    }
+    return candidates;
+  }
+  if (!target.includes("/")) {
+    if (hasSourceDir) {
+      addCandidate(`${sourceDir}/${target}`);
+    }
+    addCandidate(target);
+    return candidates;
+  }
+  addCandidate(target);
+  return candidates;
+}
+function resolveTargetNodeId(rawTarget, registry, sourceNoteKey) {
   const normalized = normalizeWikiTarget(rawTarget);
   if (!normalized) {
     return toUnresolvedNodeId(rawTarget);
   }
   const lowerTarget = normalized.toLowerCase();
-  const direct = registry.byLowerPath.get(lowerTarget);
-  if (direct) {
-    return toNoteNodeId(direct);
+  for (const candidate of buildTargetLookupCandidates(normalized, sourceNoteKey)) {
+    const direct = registry.byLowerPath.get(candidate.toLowerCase());
+    if (direct) {
+      return toNoteNodeId(direct);
+    }
   }
   if (!normalized.includes("/")) {
     const basenameMatches = registry.byLowerBasename.get(lowerTarget) ?? [];
@@ -186,7 +324,7 @@ function buildFragmentNode(id, title, type, category, pathValue, tags, missing,
   };
 }
 function parseFileFragment(vaultPath, relativePath, mtimeMs, registry) {
-  const absolutePath = path.join(vaultPath, relativePath);
+  const absolutePath = path2.join(vaultPath, relativePath);
   const raw = fs.readFileSync(absolutePath, "utf-8");
   const parsed = matter(raw);
   const frontmatter = parsed.data ?? {};
@@ -225,7 +363,7 @@ function parseFileFragment(vaultPath, relativePath, mtimeMs, registry) {
   }
   const wikiTargets = extractWikiTargets(parsed.content);
   for (const target of wikiTargets) {
-    const targetNodeId = resolveTargetNodeId(target, registry);
+    const targetNodeId = resolveTargetNodeId(target, registry, noteKey);
     if (targetNodeId.startsWith("unresolved:") && !nodes.has(targetNodeId)) {
       nodes.set(
         targetNodeId,
@@ -241,7 +379,7 @@ function parseFileFragment(vaultPath, relativePath, mtimeMs, registry) {
     });
   }
   for (const relation of extractFrontmatterRelations(frontmatter)) {
-    const targetNodeId = resolveTargetNodeId(relation.target, registry);
+    const targetNodeId = resolveTargetNodeId(relation.target, registry, noteKey);
     if (targetNodeId.startsWith("unresolved:") && !nodes.has(targetNodeId)) {
       nodes.set(
         targetNodeId,
@@ -326,7 +464,7 @@ function isValidIndex(index) {
   return typed.schemaVersion === MEMORY_GRAPH_SCHEMA_VERSION && typeof typed.vaultPath === "string" && typeof typed.generatedAt === "string" && Boolean(typed.files && typeof typed.files === "object") && Boolean(typed.graph && typeof typed.graph === "object");
 }
 function loadMemoryGraphIndex(vaultPath) {
-  const indexPath = getGraphIndexPath(path.resolve(vaultPath));
+  const indexPath = getGraphIndexPath(path2.resolve(vaultPath));
   if (!fs.existsSync(indexPath)) {
     return null;
   }
@@ -341,7 +479,7 @@ function loadMemoryGraphIndex(vaultPath) {
   }
 }
 async function buildOrUpdateMemoryGraphIndex(vaultPathInput, options = {}) {
-  const vaultPath = path.resolve(vaultPathInput);
+  const vaultPath = path2.resolve(vaultPathInput);
   ensureClawvaultDir(vaultPath);
   const existing = options.forceFull ? null : loadMemoryGraphIndex(vaultPath);
   const markdownFiles = await glob("**/*.md", {
@@ -354,7 +492,7 @@ async function buildOrUpdateMemoryGraphIndex(vaultPathInput, options = {}) {
   const existingFragments = existing?.files ?? {};
   const currentFileSet = new Set(normalizedFiles);
   for (const relativePath of normalizedFiles) {
-    const absolutePath = path.join(vaultPath, relativePath);
+    const absolutePath = path2.join(vaultPath, relativePath);
     const stat = fs.statSync(absolutePath);
     const existingFragment = existingFragments[relativePath];
     if (!options.forceFull && existingFragment && existingFragment.mtimeMs === stat.mtimeMs) {
@@ -391,6 +529,8 @@ async function getMemoryGraph(vaultPath, options = {}) {
 }
 
 export {
+  extractRawWikiLinks,
+  normalizeWikiLinkTarget,
   MEMORY_GRAPH_SCHEMA_VERSION,
   loadMemoryGraphIndex,
   buildOrUpdateMemoryGraphIndex,

package/dist/{chunk-4VQTUVH7.js → chunk-7YZWHM36.js}

@@ -1,13 +1,16 @@
 import {
   buildEntityIndex
 } from "./chunk-J7ZWCI2C.js";
+import {
+  extractRawWikiLinks,
+  normalizeWikiLinkTarget
+} from "./chunk-33DOSHTA.js";
 
 // src/lib/backlinks.ts
 import * as fs from "fs";
 import * as path from "path";
 var CLAWVAULT_DIR = ".clawvault";
 var BACKLINKS_FILE = "backlinks.json";
-var WIKI_LINK_REGEX = /\[\[([^\]]+)\]\]/g;
 function ensureClawvaultDir(vaultPath) {
   const dir = path.join(vaultPath, CLAWVAULT_DIR);
   if (!fs.existsSync(dir)) {
@@ -20,29 +23,47 @@ function toVaultId(vaultPath, filePath) {
   return relative2.split(path.sep).join("/");
 }
 function normalizeLinkTarget(raw) {
-  let target = raw.trim();
-  if (!target) return "";
-  if (target.startsWith("[[") && target.endsWith("]]")) {
-    target = target.slice(2, -2);
-  }
-  const pipeIndex = target.indexOf("|");
-  if (pipeIndex !== -1) {
-    target = target.slice(0, pipeIndex);
-  }
-  if (target.startsWith("#")) return "";
-  const hashIndex = target.indexOf("#");
-  if (hashIndex !== -1) {
-    target = target.slice(0, hashIndex);
+  return normalizeWikiLinkTarget(raw);
+}
+function normalizeLookupCandidate(value) {
+  const normalized = normalizeLinkTarget(value);
+  if (!normalized) return "";
+  const resolved = path.posix.normalize(normalized).replace(/^\/+/, "");
+  if (!resolved || resolved === "." || resolved.startsWith("../")) {
+    return "";
   }
-  target = target.trim();
-  if (!target) return "";
-  if (target.endsWith(".md")) {
-    target = target.slice(0, -3);
+  return resolved;
+}
+function buildLookupCandidates(target, sourceId) {
+  const candidates = [];
+  const sourceDir = path.posix.dirname(sourceId);
+  const hasSourceDir = sourceDir !== ".";
+  const isRelativeTarget = target.startsWith("./") || target.startsWith("../");
+  const addCandidate = (candidate) => {
+    const normalized = normalizeLookupCandidate(candidate);
+    if (!normalized || candidates.includes(normalized)) return;
+    candidates.push(normalized);
+  };
+  if (isRelativeTarget) {
+    if (hasSourceDir) {
+      addCandidate(path.posix.join(sourceDir, target));
+    } else {
+      addCandidate(target);
+    }
+    if (target.startsWith("./")) {
+      addCandidate(target.slice(2));
+    }
+    return candidates;
   }
-  if (target.startsWith("/")) {
-    target = target.slice(1);
+  if (!target.includes("/")) {
+    if (hasSourceDir) {
+      addCandidate(`${sourceDir}/${target}`);
+    }
+    addCandidate(target);
+    return candidates;
   }
-  return target.replace(/\\/g, "/");
+  addCandidate(target);
+  return candidates;
 }
 function listMarkdownFiles(vaultPath) {
   const files = [];
@@ -75,11 +96,16 @@ function buildKnownIds(vaultPath, files) {
   }
   return { ids, idsLower };
 }
-function resolveTarget(target, known, entityIndex) {
+function resolveTarget(target, sourceId, known, entityIndex) {
   if (!target) return null;
-  if (known.ids.has(target)) return target;
+  for (const candidate of buildLookupCandidates(target, sourceId)) {
+    if (known.ids.has(candidate)) return candidate;
+    const lowerCandidate = candidate.toLowerCase();
+    if (known.idsLower.has(lowerCandidate)) {
+      return known.idsLower.get(lowerCandidate);
+    }
+  }
   const lower = target.toLowerCase();
-  if (known.idsLower.has(lower)) return known.idsLower.get(lower);
   if (entityIndex?.entries.has(lower)) return entityIndex.entries.get(lower);
   return null;
 }
@@ -93,12 +119,12 @@ function scanVaultLinks(vaultPath, options = {}) {
   for (const file of files) {
     const sourceId = toVaultId(vaultPath, file);
     const content = fs.readFileSync(file, "utf-8");
-    const matches = content.match(WIKI_LINK_REGEX) || [];
+    const matches = extractRawWikiLinks(content);
     linkCount += matches.length;
     for (const match of matches) {
       const target = normalizeLinkTarget(match);
       if (!target) continue;
-      const resolved = resolveTarget(target, known, entityIndex);
+      const resolved = resolveTarget(target, sourceId, known, entityIndex);
       if (!resolved) {
         orphans.push({ source: sourceId, target });
         continue;

package/dist/{chunk-YNIPYN4F.js → chunk-A4EAUO7T.js}

@@ -8,7 +8,7 @@ import {
 import {
   getMemoryGraph,
   loadMemoryGraphIndex
-} from "./chunk-ZZA73MFY.js";
+} from "./chunk-33DOSHTA.js";
 
 // src/commands/inject.ts
 import * as path2 from "path";

package/dist/{chunk-6NYYDNNG.js → chunk-BV5KWZKR.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-MNPUYCHQ.js";
 import {
   Observer
-} from "./chunk-OQGYFZ4A.js";
+} from "./chunk-FUSLEY6L.js";
 import {
   resolveVaultPath
 } from "./chunk-GNJL4YGR.js";