claudeup 4.19.0 → 4.22.0

package/src/__tests__/conventions-integration.test.ts

@@ -0,0 +1,745 @@
+/**
+ * Integration tests for the Plugin Conventions System
+ *
+ * Tests the complete convention lifecycle through the PUBLIC API only.
+ * All operations use temporary directories -- no real project modification.
+ *
+ * Covers:
+ * 1. End-to-end convention lifecycle (install, verify, uninstall)
+ * 2. Idempotency (apply twice = same result)
+ * 3. Version upgrade (v1 -> v2 content update)
+ * 4. Multiple plugins coexisting
+ * 5. Doctor detection and fix
+ * 6. Malformed CLAUDE.md handling
+ * 7. Path classification (.gitignore entries)
+ *
+ * IMPLEMENTATION ISSUES FOUND:
+ * - applyConventions() silently skips all convention application despite valid
+ *   plugin.json with conventions field. resolvePluginConventions() and
+ *   readConventionTemplate() work correctly individually, but applyConventions()
+ *   does not invoke them. Tests 1-A, 2-A, 3-A, 4-A, 20-A document this.
+ * - checkGitignoreEntries() returns { present: string[], missing: string[] }
+ *   instead of Promise<string[]> per architecture spec. Tests adapted to use
+ *   the actual .missing property. This is a minor API deviation (richer return).
+ */
+
+import { describe, it, expect, beforeEach, afterEach } from 'bun:test';
+import { mkdtemp, rm, mkdir, writeFile, readFile } from 'node:fs/promises';
+import { existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { tmpdir } from 'node:os';
+
+import {
+  // Gitignore operations
+  ensureGitignoreEntries,
+  checkGitignoreEntries,
+  // CLAUDE.md operations
+  parseClaudeMdSections,
+  injectClaudeMdSection,
+  removeClaudeMdSection,
+  listClaudeMdSections,
+  // Convention resolution
+  resolvePluginConventions,
+  readConventionTemplate,
+  // End-to-end convention application
+  applyConventions,
+  removeConventions,
+  // Types
+  type ParseResult,
+} from '../services/conventions-manager.js';
+
+// ---------------------------------------------------------------------------
+// Helpers
+// ---------------------------------------------------------------------------
+
+/** Create an isolated temp directory for test operations */
+async function createTempDir(): Promise<string> {
+  return mkdtemp(join(tmpdir(), 'conventions-integ-'));
+}
+
+/** Create a mock plugin directory with plugin.json and optional template */
+async function createMockPlugin(
+  baseDir: string,
+  pluginName: string,
+  opts: {
+    gitignoreProject?: string[];
+    gitignoreGlobal?: string[];
+    claudemdSection?: string;
+    claudemdVersion?: string;
+    templateContent?: string;
+  },
+): Promise<string> {
+  const pluginDir = join(baseDir, pluginName);
+  await mkdir(pluginDir, { recursive: true });
+
+  const manifest: Record<string, unknown> = {
+    name: pluginName,
+    version: '1.0.0',
+    description: `Test plugin ${pluginName}`,
+  };
+
+  const conventions: Record<string, unknown> = {};
+
+  if (opts.gitignoreProject || opts.gitignoreGlobal) {
+    const gitignore: Record<string, string[]> = {};
+    if (opts.gitignoreProject) gitignore.project = opts.gitignoreProject;
+    if (opts.gitignoreGlobal) gitignore.global = opts.gitignoreGlobal;
+    conventions.gitignore = gitignore;
+  }
+
+  if (opts.claudemdSection && opts.claudemdVersion && opts.templateContent) {
+    conventions.claudemd = {
+      section: opts.claudemdSection,
+      template: './templates/claude-md-conventions.md',
+      version: opts.claudemdVersion,
+    };
+
+    // Create the template file
+    const templateDir = join(pluginDir, 'templates');
+    await mkdir(templateDir, { recursive: true });
+    await writeFile(
+      join(templateDir, 'claude-md-conventions.md'),
+      opts.templateContent,
+      'utf-8',
+    );
+  }
+
+  if (Object.keys(conventions).length > 0) {
+    manifest.conventions = conventions;
+  }
+
+  await writeFile(
+    join(pluginDir, 'plugin.json'),
+    JSON.stringify(manifest, null, 2),
+    'utf-8',
+  );
+
+  return pluginDir;
+}
+
+/**
+ * Simulate what applyConventions SHOULD do, using the working lower-level APIs.
+ * This lets us test the convention system end-to-end even though applyConventions
+ * has a bug (see IMPLEMENTATION ISSUES above).
+ */
+async function applyConventionsManually(
+  pluginDir: string,
+  projectDir: string,
+): Promise<{
+  gitignore: { added: string[]; modified: boolean };
+  claudemd: { action: string; section?: string };
+}> {
+  const conventions = await resolvePluginConventions(pluginDir);
+  if (!conventions) {
+    return { gitignore: { added: [], modified: false }, claudemd: { action: 'skipped' } };
+  }
+
+  let gitignoreResult = { added: [] as string[], modified: false };
+  if (conventions.gitignore?.project && conventions.gitignore.project.length > 0) {
+    const gitignorePath = join(projectDir, '.gitignore');
+    gitignoreResult = await ensureGitignoreEntries(gitignorePath, conventions.gitignore.project);
+  }
+
+  let claudemdResult: { action: string; section?: string } = { action: 'skipped' };
+  if (conventions.claudemd) {
+    const claudeMdPath = join(projectDir, 'CLAUDE.md');
+    const template = await readConventionTemplate(pluginDir, conventions.claudemd.template);
+    const injectResult = await injectClaudeMdSection(
+      claudeMdPath,
+      conventions.claudemd.section,
+      conventions.claudemd.version,
+      template,
+    );
+    claudemdResult = { action: injectResult.action, section: conventions.claudemd.section };
+  }
+
+  return { gitignore: gitignoreResult, claudemd: claudemdResult };
+}
+
+// ---------------------------------------------------------------------------
+// Tests
+// ---------------------------------------------------------------------------
+
+describe('Convention System Integration', () => {
+  let tempDir: string;
+  let projectDir: string;
+
+  beforeEach(async () => {
+    tempDir = await createTempDir();
+    projectDir = join(tempDir, 'project');
+    await mkdir(projectDir, { recursive: true });
+  });
+
+  afterEach(async () => {
+    if (existsSync(tempDir)) {
+      await rm(tempDir, { recursive: true, force: true });
+    }
+  });
+
+  // =========================================================================
+  // Category 1: End-to-End Convention Lifecycle
+  // =========================================================================
+
+  describe('End-to-End Convention Lifecycle', () => {
+    it('TEST-1: install plugin with conventions updates .gitignore', async () => {
+      const pluginDir = await createMockPlugin(tempDir, 'test-plugin', {
+        gitignoreProject: ['.mnemex/', '.claude/sessions/'],
+        claudemdSection: 'test-plugin',
+        claudemdVersion: '1.0.0',
+        templateContent: '## Test Plugin\n\nSome conventions here.\n',
+      });
+
+      const result = await applyConventionsManually(pluginDir, projectDir);
+
+      // Gitignore should have been modified
+      expect(result.gitignore.modified).toBe(true);
+      expect(result.gitignore.added).toContain('.mnemex/');
+      expect(result.gitignore.added).toContain('.claude/sessions/');
+
+      // Verify file on disk
+      const gitignorePath = join(projectDir, '.gitignore');
+      expect(existsSync(gitignorePath)).toBe(true);
+      const gitignoreContent = await readFile(gitignorePath, 'utf-8');
+      expect(gitignoreContent).toContain('.mnemex/');
+      expect(gitignoreContent).toContain('.claude/sessions/');
+    });
+
+    it('TEST-2: install plugin with conventions injects CLAUDE.md section', async () => {
+      const pluginDir = await createMockPlugin(tempDir, 'test-plugin', {
+        gitignoreProject: ['.mnemex/'],
+        claudemdSection: 'test-plugin',
+        claudemdVersion: '1.0.0',
+        templateContent: '## Test Plugin Conventions\n\nDo not commit `.mnemex/`.\n',
+      });
+
+      const result = await applyConventionsManually(pluginDir, projectDir);
+
+      // CLAUDE.md should have been injected
+      expect(result.claudemd.action).toBe('inserted');
+
+      // Verify file on disk
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      expect(existsSync(claudeMdPath)).toBe(true);
+      const claudeMdContent = await readFile(claudeMdPath, 'utf-8');
+      expect(claudeMdContent).toContain('<!-- BEGIN magus:test-plugin v1.0.0 -->');
+      expect(claudeMdContent).toContain('<!-- END magus:test-plugin -->');
+      expect(claudeMdContent).toContain('Test Plugin Conventions');
+      expect(claudeMdContent).toContain('Do not commit `.mnemex/`.');
+    });
+
+    it('TEST-3: uninstall removes CLAUDE.md section but keeps gitignore entries', async () => {
+      const pluginDir = await createMockPlugin(tempDir, 'test-plugin', {
+        gitignoreProject: ['.mnemex/', '.claude/sessions/'],
+        claudemdSection: 'test-plugin',
+        claudemdVersion: '1.0.0',
+        templateContent: '## Test Plugin Conventions\n\nContent here.\n',
+      });
+
+      // Apply conventions manually (since applyConventions has a bug)
+      await applyConventionsManually(pluginDir, projectDir);
+
+      // Verify both files exist
+      const gitignorePath = join(projectDir, '.gitignore');
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      expect(existsSync(gitignorePath)).toBe(true);
+      expect(existsSync(claudeMdPath)).toBe(true);
+
+      // Remove CLAUDE.md section directly (removeConventions has same bug as applyConventions)
+      const removeResult = await removeClaudeMdSection(claudeMdPath, 'test-plugin');
+      expect(removeResult.removed).toBe(true);
+
+      // CLAUDE.md section should be gone
+      const claudeMdContent = await readFile(claudeMdPath, 'utf-8');
+      expect(claudeMdContent).not.toContain('<!-- BEGIN magus:test-plugin');
+      expect(claudeMdContent).not.toContain('<!-- END magus:test-plugin -->');
+      expect(claudeMdContent).not.toContain('Test Plugin Conventions');
+
+      // .gitignore entries MUST still be present (by design)
+      const gitignoreContent = await readFile(gitignorePath, 'utf-8');
+      expect(gitignoreContent).toContain('.mnemex/');
+      expect(gitignoreContent).toContain('.claude/sessions/');
+    });
+  });
+
+  // =========================================================================
+  // Category 2: Idempotency
+  // =========================================================================
+
+  describe('Idempotency', () => {
+    it('TEST-4: applying conventions twice produces identical result', async () => {
+      const pluginDir = await createMockPlugin(tempDir, 'test-plugin', {
+        gitignoreProject: ['.mnemex/'],
+        claudemdSection: 'test-plugin',
+        claudemdVersion: '1.0.0',
+        templateContent: '## Test Conventions\n\nContent.\n',
+      });
+
+      // First apply (using manual helper)
+      const result1 = await applyConventionsManually(pluginDir, projectDir);
+      expect(result1.gitignore.modified).toBe(true);
+      expect(result1.claudemd.action).toBe('inserted');
+
+      // Snapshot file contents after first apply
+      const gitignorePath = join(projectDir, '.gitignore');
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      const gitignoreAfterFirst = await readFile(gitignorePath, 'utf-8');
+      const claudeMdAfterFirst = await readFile(claudeMdPath, 'utf-8');
+
+      // Second apply
+      const result2 = await applyConventionsManually(pluginDir, projectDir);
+      expect(result2.gitignore.modified).toBe(false);
+      expect(result2.claudemd.action).toBe('unchanged');
+
+      // File contents must be identical
+      const gitignoreAfterSecond = await readFile(gitignorePath, 'utf-8');
+      const claudeMdAfterSecond = await readFile(claudeMdPath, 'utf-8');
+      expect(gitignoreAfterSecond).toBe(gitignoreAfterFirst);
+      expect(claudeMdAfterSecond).toBe(claudeMdAfterFirst);
+    });
+
+    it('TEST-5: ensureGitignoreEntries is idempotent', async () => {
+      const gitignorePath = join(projectDir, '.gitignore');
+
+      // First call
+      const result1 = await ensureGitignoreEntries(gitignorePath, ['.mnemex/', '.claudemem/']);
+      expect(result1.modified).toBe(true);
+      expect(result1.added.length).toBe(2);
+
+      const contentAfterFirst = await readFile(gitignorePath, 'utf-8');
+
+      // Second call with same entries
+      const result2 = await ensureGitignoreEntries(gitignorePath, ['.mnemex/', '.claudemem/']);
+      expect(result2.modified).toBe(false);
+      expect(result2.added.length).toBe(0);
+
+      const contentAfterSecond = await readFile(gitignorePath, 'utf-8');
+      expect(contentAfterSecond).toBe(contentAfterFirst);
+    });
+
+    it('TEST-6: injectClaudeMdSection with same version is idempotent', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      const content = '## Test Section\n\nSome content.\n';
+
+      // First inject
+      const result1 = await injectClaudeMdSection(claudeMdPath, 'test-plugin', '1.0.0', content);
+      expect(result1.action).toBe('inserted');
+
+      // Second inject with same version and content
+      const result2 = await injectClaudeMdSection(claudeMdPath, 'test-plugin', '1.0.0', content);
+      expect(result2.action).toBe('unchanged');
+    });
+  });
+
+  // =========================================================================
+  // Category 3: Version Upgrade
+  // =========================================================================
+
+  describe('Version Upgrade', () => {
+    it('TEST-7: applying v2.0.0 over v1.0.0 updates CLAUDE.md content', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      const v1Content = '## V1 Content\n\nOriginal version.\n';
+      const v2Content = '## V2 Content\n\nUpdated version with new features.\n';
+
+      // Inject v1
+      const result1 = await injectClaudeMdSection(claudeMdPath, 'test-plugin', '1.0.0', v1Content);
+      expect(result1.action).toBe('inserted');
+
+      // Inject v2
+      const result2 = await injectClaudeMdSection(claudeMdPath, 'test-plugin', '2.0.0', v2Content);
+      expect(result2.action).toBe('updated');
+      expect(result2.previousVersion).toBe('1.0.0');
+    });
+
+    it('TEST-8: version marker is updated in BEGIN tag after upgrade', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      const v1Content = '## V1 Content\n\nOriginal.\n';
+      const v2Content = '## V2 Content\n\nNew stuff.\n';
+
+      await injectClaudeMdSection(claudeMdPath, 'test-plugin', '1.0.0', v1Content);
+      await injectClaudeMdSection(claudeMdPath, 'test-plugin', '2.0.0', v2Content);
+
+      const fileContent = await readFile(claudeMdPath, 'utf-8');
+
+      // Should have v2 marker, not v1
+      expect(fileContent).toContain('<!-- BEGIN magus:test-plugin v2.0.0 -->');
+      expect(fileContent).not.toContain('<!-- BEGIN magus:test-plugin v1.0.0 -->');
+
+      // Should have v2 content, not v1
+      expect(fileContent).toContain('V2 Content');
+      expect(fileContent).toContain('New stuff.');
+      expect(fileContent).not.toContain('V1 Content');
+      expect(fileContent).not.toContain('Original.');
+    });
+  });
+
+  // =========================================================================
+  // Category 4: Multiple Plugins
+  // =========================================================================
+
+  describe('Multiple Plugins', () => {
+    it('TEST-9: two plugins can coexist in CLAUDE.md', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+
+      const contentA = '## Plugin A Conventions\n\nPlugin A content.\n';
+      const contentB = '## Plugin B Conventions\n\nPlugin B content.\n';
+
+      await injectClaudeMdSection(claudeMdPath, 'plugin-a', '1.0.0', contentA);
+      await injectClaudeMdSection(claudeMdPath, 'plugin-b', '1.0.0', contentB);
+
+      const fileContent = await readFile(claudeMdPath, 'utf-8');
+
+      // Both sections present
+      expect(fileContent).toContain('<!-- BEGIN magus:plugin-a v1.0.0 -->');
+      expect(fileContent).toContain('<!-- END magus:plugin-a -->');
+      expect(fileContent).toContain('Plugin A content.');
+
+      expect(fileContent).toContain('<!-- BEGIN magus:plugin-b v1.0.0 -->');
+      expect(fileContent).toContain('<!-- END magus:plugin-b -->');
+      expect(fileContent).toContain('Plugin B content.');
+
+      // List should show both
+      const sections = await listClaudeMdSections(claudeMdPath);
+      expect(sections.length).toBe(2);
+      const sectionNames = sections.map((s) => s.section);
+      expect(sectionNames).toContain('plugin-a');
+      expect(sectionNames).toContain('plugin-b');
+    });
+
+    it('TEST-10: removing one plugin leaves the other intact', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+
+      const contentA = '## Plugin A Conventions\n\nPlugin A content.\n';
+      const contentB = '## Plugin B Conventions\n\nPlugin B content.\n';
+
+      await injectClaudeMdSection(claudeMdPath, 'plugin-a', '1.0.0', contentA);
+      await injectClaudeMdSection(claudeMdPath, 'plugin-b', '1.0.0', contentB);
+
+      // Remove plugin-a
+      const removeResult = await removeClaudeMdSection(claudeMdPath, 'plugin-a');
+      expect(removeResult.removed).toBe(true);
+
+      const fileContent = await readFile(claudeMdPath, 'utf-8');
+
+      // Plugin A should be gone
+      expect(fileContent).not.toContain('<!-- BEGIN magus:plugin-a');
+      expect(fileContent).not.toContain('Plugin A content.');
+
+      // Plugin B should still be there
+      expect(fileContent).toContain('<!-- BEGIN magus:plugin-b v1.0.0 -->');
+      expect(fileContent).toContain('<!-- END magus:plugin-b -->');
+      expect(fileContent).toContain('Plugin B content.');
+    });
+
+    it('TEST-11: two plugins with different gitignore entries both present', async () => {
+      const gitignorePath = join(projectDir, '.gitignore');
+
+      await ensureGitignoreEntries(gitignorePath, ['.mnemex/'], '# Plugin A');
+      await ensureGitignoreEntries(gitignorePath, ['.claudemem/'], '# Plugin B');
+
+      const content = await readFile(gitignorePath, 'utf-8');
+      expect(content).toContain('.mnemex/');
+      expect(content).toContain('.claudemem/');
+
+      // No duplicates -- adding same entries again should not duplicate
+      await ensureGitignoreEntries(gitignorePath, ['.mnemex/']);
+      const contentAfter = await readFile(gitignorePath, 'utf-8');
+      const mnemexOccurrences = contentAfter.split('.mnemex/').length - 1;
+      expect(mnemexOccurrences).toBe(1);
+    });
+  });
+
+  // =========================================================================
+  // Category 5: Doctor Detection
+  // =========================================================================
+
+  describe('Doctor Detection', () => {
+    // Note: checkGitignoreEntries returns { present: string[], missing: string[] }
+    // instead of string[] as documented in the architecture. This is an
+    // IMPLEMENTATION_ISSUE (API deviation), but the richer return type is a
+    // superset. Tests use .missing property to access the missing entries.
+
+    it('TEST-12: checkGitignoreEntries detects missing entries', async () => {
+      const gitignorePath = join(projectDir, '.gitignore');
+      // Create gitignore with only one entry
+      await writeFile(gitignorePath, '.mnemex/\n', 'utf-8');
+
+      const result = await checkGitignoreEntries(gitignorePath, [
+        '.mnemex/',
+        '.claudemem/',
+        '.claude/sessions/',
+      ]);
+
+      // API returns { present, missing } object instead of string[] per contract
+      const resultObj = result as unknown as { present: string[]; missing: string[] };
+
+      expect(resultObj.missing).toContain('.claudemem/');
+      expect(resultObj.missing).toContain('.claude/sessions/');
+      expect(resultObj.missing).not.toContain('.mnemex/');
+      expect(resultObj.missing.length).toBe(2);
+
+      // Also verify present entries
+      expect(resultObj.present).toContain('.mnemex/');
+      expect(resultObj.present.length).toBe(1);
+    });
+
+    it('TEST-13: missing CLAUDE.md section is detectable via listClaudeMdSections', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      // Create CLAUDE.md with existing content but no managed sections
+      await writeFile(claudeMdPath, '# Project CLAUDE.md\n\nSome existing content.\n', 'utf-8');
+
+      const sections = await listClaudeMdSections(claudeMdPath);
+      expect(sections.length).toBe(0);
+    });
+
+    it('TEST-14: ensureGitignoreEntries fixes missing entries detected by check', async () => {
+      const gitignorePath = join(projectDir, '.gitignore');
+      await writeFile(gitignorePath, '.mnemex/\n', 'utf-8');
+
+      // Detect missing using the actual return type
+      const checkResult = await checkGitignoreEntries(gitignorePath, [
+        '.mnemex/',
+        '.claudemem/',
+        '.claude/sessions/',
+      ]);
+      const missing = (checkResult as unknown as { missing: string[] }).missing;
+      expect(missing.length).toBe(2);
+
+      // Fix by adding missing entries
+      const fixResult = await ensureGitignoreEntries(gitignorePath, missing);
+      expect(fixResult.modified).toBe(true);
+      expect(fixResult.added.length).toBe(2);
+
+      // Re-check: should now all be present
+      const recheck = await checkGitignoreEntries(gitignorePath, [
+        '.mnemex/',
+        '.claudemem/',
+        '.claude/sessions/',
+      ]);
+      const stillMissing = (recheck as unknown as { missing: string[] }).missing;
+      expect(stillMissing.length).toBe(0);
+    });
+  });
+
+  // =========================================================================
+  // Category 6: Malformed CLAUDE.md Handling
+  // =========================================================================
+
+  describe('Malformed CLAUDE.md Handling', () => {
+    it('TEST-15: inject refuses when CLAUDE.md has missing END marker', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      // Write a malformed file: BEGIN without END
+      const malformedContent = [
+        '# Project Notes',
+        '',
+        '<!-- BEGIN magus:broken-plugin v1.0.0 -->',
+        '## Broken Plugin',
+        '',
+        'This section has no END marker.',
+        '',
+        '# More content below',
+        '',
+      ].join('\n');
+      await writeFile(claudeMdPath, malformedContent, 'utf-8');
+
+      // Attempting to inject a NEW section should be refused
+      const result = await injectClaudeMdSection(
+        claudeMdPath,
+        'new-plugin',
+        '1.0.0',
+        '## New Plugin\n\nContent.\n',
+      );
+      expect(result.action).toBe('error');
+      expect(result.error).toBeDefined();
+      expect(typeof result.error).toBe('string');
+    });
+
+    it('TEST-16: parse detects duplicate sections', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      const duplicateContent = [
+        '# Project',
+        '',
+        '<!-- BEGIN magus:test-plugin v1.0.0 -->',
+        '## First instance',
+        '<!-- END magus:test-plugin -->',
+        '',
+        '<!-- BEGIN magus:test-plugin v1.0.0 -->',
+        '## Second instance (duplicate!)',
+        '<!-- END magus:test-plugin -->',
+        '',
+      ].join('\n');
+      await writeFile(claudeMdPath, duplicateContent, 'utf-8');
+
+      const parseResult: ParseResult = await parseClaudeMdSections(claudeMdPath);
+      expect(parseResult.errors.length).toBeGreaterThan(0);
+
+      const duplicateError = parseResult.errors.find(
+        (e) => e.type === 'duplicate_section',
+      );
+      expect(duplicateError).toBeDefined();
+      if (duplicateError) {
+        expect(duplicateError.section).toBe('test-plugin');
+      }
+    });
+
+    it('TEST-17: parse ignores markers inside code blocks', async () => {
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      const contentWithCodeBlock = [
+        '# Documentation',
+        '',
+        'Here is an example of markers:',
+        '',
+        '```markdown',
+        '<!-- BEGIN magus:example v1.0.0 -->',
+        '## Example section',
+        '<!-- END magus:example -->',
+        '```',
+        '',
+        'The above markers are inside a code block and should be ignored.',
+        '',
+      ].join('\n');
+      await writeFile(claudeMdPath, contentWithCodeBlock, 'utf-8');
+
+      const parseResult = await parseClaudeMdSections(claudeMdPath);
+
+      // Markers inside code blocks should NOT be treated as real sections
+      const realSections = parseResult.sections.filter(
+        (s) => !s.insideCodeBlock,
+      );
+      expect(realSections.length).toBe(0);
+
+      // If the parser reports code-block markers, check the error type
+      if (parseResult.errors.length > 0) {
+        const codeBlockErrors = parseResult.errors.filter(
+          (e) => e.type === 'marker_in_code_block',
+        );
+        // It's valid for the parser to either:
+        // 1. Report marker_in_code_block errors, OR
+        // 2. Simply ignore them (no sections, no errors)
+        // Both behaviors comply with the architecture spec.
+        if (codeBlockErrors.length > 0) {
+          expect(codeBlockErrors[0].section).toBe('example');
+        }
+      }
+    });
+  });
+
+  // =========================================================================
+  // Category 7: Path Classification (Gitignore Entries)
+  // =========================================================================
+
+  describe('Path Classification', () => {
+    it('TEST-18: all standard private paths can be added to gitignore', async () => {
+      const gitignorePath = join(projectDir, '.gitignore');
+      const privatePaths = [
+        '.mnemex/',
+        '.claudemem/',
+        '.claude/sessions/',
+        '.claude/worktrees/',
+      ];
+
+      const result = await ensureGitignoreEntries(
+        gitignorePath,
+        privatePaths,
+        '# Claude Code ephemeral/machine-specific data',
+      );
+
+      expect(result.modified).toBe(true);
+      expect(result.added.length).toBe(4);
+
+      const content = await readFile(gitignorePath, 'utf-8');
+      for (const path of privatePaths) {
+        expect(content).toContain(path);
+      }
+    });
+
+    it('TEST-19: checkGitignoreEntries reports correct missing set', async () => {
+      const gitignorePath = join(projectDir, '.gitignore');
+      // Only .mnemex/ exists
+      await writeFile(gitignorePath, '.mnemex/\n', 'utf-8');
+
+      const allPaths = [
+        '.mnemex/',
+        '.claudemem/',
+        '.claude/sessions/',
+        '.claude/worktrees/',
+      ];
+
+      const result = await checkGitignoreEntries(gitignorePath, allPaths);
+      // API returns { present, missing } instead of string[] (see IMPLEMENTATION_ISSUE note)
+      const resultObj = result as unknown as { present: string[]; missing: string[] };
+
+      expect(resultObj.missing.length).toBe(3);
+      expect(resultObj.missing).toContain('.claudemem/');
+      expect(resultObj.missing).toContain('.claude/sessions/');
+      expect(resultObj.missing).toContain('.claude/worktrees/');
+      expect(resultObj.missing).not.toContain('.mnemex/');
+    });
+
+    it('TEST-20: gitignore entries survive plugin uninstall', async () => {
+      const pluginDir = await createMockPlugin(tempDir, 'test-plugin', {
+        gitignoreProject: ['.mnemex/', '.claude/sessions/'],
+        claudemdSection: 'test-plugin',
+        claudemdVersion: '1.0.0',
+        templateContent: '## Test\n\nContent.\n',
+      });
+
+      // Apply conventions manually (since applyConventions has a bug)
+      await applyConventionsManually(pluginDir, projectDir);
+
+      const gitignorePath = join(projectDir, '.gitignore');
+      const gitignoreBefore = await readFile(gitignorePath, 'utf-8');
+      expect(gitignoreBefore).toContain('.mnemex/');
+      expect(gitignoreBefore).toContain('.claude/sessions/');
+
+      // Remove conventions via public API
+      await removeConventions('test-plugin', projectDir);
+
+      // Gitignore entries MUST still be there (by design)
+      const gitignoreAfter = await readFile(gitignorePath, 'utf-8');
+      expect(gitignoreAfter).toContain('.mnemex/');
+      expect(gitignoreAfter).toContain('.claude/sessions/');
+    });
+  });
+
+  // =========================================================================
+  // IMPLEMENTATION_ISSUE: applyConventions() regression tests
+  // These tests SHOULD pass when the bug in applyConventions() is fixed.
+  // They currently fail because applyConventions() silently skips all work.
+  // =========================================================================
+
+  describe('applyConventions orchestration (IMPLEMENTATION_ISSUE)', () => {
+    it('TEST-1-A: applyConventions should apply gitignore entries', async () => {
+      const pluginDir = await createMockPlugin(tempDir, 'apply-test', {
+        gitignoreProject: ['.mnemex/', '.claude/sessions/'],
+        claudemdSection: 'apply-test',
+        claudemdVersion: '1.0.0',
+        templateContent: '## Test Plugin\n\nConventions.\n',
+      });
+
+      const result = await applyConventions(pluginDir, projectDir);
+      expect(result.gitignore.modified).toBe(true);
+      expect(result.gitignore.added).toContain('.mnemex/');
+    });
+
+    it('TEST-2-A: applyConventions should inject CLAUDE.md section', async () => {
+      const pluginDir = await createMockPlugin(tempDir, 'apply-test', {
+        claudemdSection: 'apply-test',
+        claudemdVersion: '1.0.0',
+        templateContent: '## Test Plugin\n\nConventions.\n',
+      });
+
+      const result = await applyConventions(pluginDir, projectDir);
+      expect(result.claudemd.action).toBe('inserted');
+    });
+
+    it('TEST-3-A: removeConventions should remove CLAUDE.md section', async () => {
+      // First create a CLAUDE.md with a section using the working low-level API
+      const claudeMdPath = join(projectDir, 'CLAUDE.md');
+      await injectClaudeMdSection(claudeMdPath, 'test-plugin', '1.0.0', '## Test\n\nContent.\n');
+
+      // removeConventions should find and remove the section
+      const result = await removeConventions('test-plugin', projectDir);
+      expect(result.claudemd.removed).toBe(true);
+    });
+  });
+});