claudeos-core 2.3.2 → 2.4.1

package/SECURITY.md

@@ -0,0 +1,51 @@
+# Security Policy
+
+## Supported Versions
+
+| Version | Supported          |
+|---------|--------------------|
+| 2.4.x   | :white_check_mark: |
+| < 2.4   | :x:                |
+
+Only the latest minor release line receives security fixes. Users on older versions are encouraged to upgrade.
+
+## Reporting a Vulnerability
+
+**Please do not file public GitHub issues for security vulnerabilities.**
+
+Two private channels are available:
+
+1. **Email** — `claudeoscore@gmail.com`
+2. **GitHub Security Advisories** — [Open a private report](https://github.com/claudeos-core/claudeos-core/security/advisories/new) (preferred; provides a private workspace + CVE coordination)
+
+### What to include
+
+- Affected version (`npx claudeos-core --version`)
+- Reproduction steps or proof-of-concept
+- Impact assessment (data exposure / code execution / DoS / etc.)
+- Suggested fix (if any)
+
+### Response timeline
+
+| Stage              | Target  |
+|--------------------|---------|
+| Initial reply      | 48 hours |
+| Triage + severity  | 7 days   |
+| Fix or mitigation  | 30 days for high/critical, 90 days for medium/low |
+
+We will keep you informed throughout the process and credit you in the release notes (unless you prefer to remain anonymous).
+
+## Scope
+
+In scope:
+
+- The `claudeos-core` npm package and its CLI (`bin/cli.js`)
+- The 4-Pass pipeline orchestrator (`bin/commands/init.js`)
+- All validators (`claude-md-validator/`, `content-validator/`, `pass-json-validator/`)
+- Generated artifacts (CLAUDE.md, rules, skills, guides) when produced by an unmodified release
+
+Out of scope:
+
+- Vulnerabilities in third-party dependencies (please report upstream; we will track and update)
+- The `claude` CLI itself (report to Anthropic)
+- User-modified template forks

package/bin/commands/init.js

@@ -205,9 +205,46 @@ async function runPass3Split(ctx) {
     return batches;
   }
 
+  // v2.4.0 — Stack-type classification helper.
+  //
+  // Returns `{ backend: Set<string>, frontend: Set<string>, isMultiStack: boolean }`
+  // built from `project-analysis.json`. The maps are used by
+  // `buildBatchScopeNote` to emit ALWAYS-typed per-domain paths
+  // (`70.domains/{type}/{domain}.md`) regardless of single/multi-stack.
+  // Uniform layout means single-stack projects pay a 1-folder depth
+  // cost in exchange for zero-migration when the other stack is later
+  // added, and validators recognize a single pattern. The `isMultiStack`
+  // flag is retained for tools that may want to surface the distinction
+  // (e.g. user-facing console output) but is no longer used to branch
+  // path generation.
+  function loadDomainTypeMap() {
+    const result = { backend: new Set(), frontend: new Set(), isMultiStack: false };
+    try {
+      const paPath = path.join(GENERATED_DIR, "project-analysis.json");
+      if (fileExists(paPath)) {
+        const pa = JSON.parse(readFile(paPath));
+        if (Array.isArray(pa.backendDomains)) {
+          for (const d of pa.backendDomains) {
+            const n = d && (d.name || d);
+            if (n) result.backend.add(n);
+          }
+        }
+        if (Array.isArray(pa.frontendDomains)) {
+          for (const d of pa.frontendDomains) {
+            const n = d && (d.name || d);
+            if (n) result.frontend.add(n);
+          }
+        }
+      }
+    } catch (_e) { /* tolerate missing/corrupt analysis — fallback to flat paths */ }
+    result.isMultiStack = result.backend.size > 0 && result.frontend.size > 0;
+    return result;
+  }
+
   const domainOrder = loadDomainOrder();
   const batches = computeBatches(domainOrder);
   const isBatched = batches.length > 1;
+  const domainTypeMap = loadDomainTypeMap();
 
   if (isBatched) {
     log(`    📦 Batch sub-division enabled: ${domainOrder.length} domains → ${batches.length} batches per stage (3b, 3c)`);
@@ -285,28 +322,100 @@ async function runPass3Split(ctx) {
   // and which common files to include vs skip.
   function buildBatchScopeNote(stageKind, batchIndex, totalBatches, batchDomains) {
     const isLastBatch = batchIndex === totalBatches - 1;
+    const isSingleBatch = totalBatches === 1;
     const domainList = batchDomains.map(d => `\`${d}\``).join(", ");
 
-    let note = `## Batch scope (${stageKind}-batch ${batchIndex + 1}/${totalBatches})\n\n`;
-    note += `This Pass 3 stage has been sub-divided into ${totalBatches} batches to avoid context overflow.\n`;
-    note += `**You are processing batch ${batchIndex + 1} of ${totalBatches}.**\n\n`;
+    // v2.4.0 — Always-typed per-domain layout.
+    //
+    // Every per-domain file lives under a `{type}/` sub-folder
+    // (`70.domains/backend/` or `70.domains/frontend/`) regardless of
+    // whether the project is single-stack or multi-stack. This is a
+    // deliberate uniform-convention choice:
+    //
+    //   - Single-stack projects pay a 1-folder depth cost; in exchange
+    //     they migrate to multi-stack with ZERO file moves when frontend
+    //     (or backend) is later added.
+    //   - LLM never has to decide which form to use → no probabilistic
+    //     drift between Pass 3 runs.
+    //   - Validators (content-validator, claude-md-validator) need
+    //     to recognize only ONE pattern.
+    //   - Future stack types (mobile, cli, agent, ...) extend naturally
+    //     by adding new `{type}/` sub-folders.
+    //
+    // Per-domain type lookup uses `domainTypeMap` from
+    // `project-analysis.json`. Domains not in either set fall back to
+    // `backend` (the dominant case in real-world projects) — this
+    // happens only when the analysis JSON is malformed or absent.
+    const typeOf = (name) => {
+      if (domainTypeMap.frontend.has(name)) return "frontend";
+      // backend is the default when the domain is unknown to both sets.
+      // This happens only on malformed analysis JSON; backend is the
+      // safer default since it's the dominant project type.
+      return "backend";
+    };
+    const stdPathFor = (name) => `claudeos-core/standard/70.domains/${typeOf(name)}/${name}.md`;
+    const rulePathFor = (name) => `.claude/rules/70.domains/${typeOf(name)}/${name}-rules.md`;
+    const stagedRulePathFor = (name) => `claudeos-core/generated/.staged-rules/70.domains/${typeOf(name)}/${name}-rules.md`;
+
+    let note = isSingleBatch
+      ? `## Per-domain scope (${stageKind}, single-batch run)\n\n`
+      : `## Batch scope (${stageKind}-batch ${batchIndex + 1}/${totalBatches})\n\n`;
+    if (isSingleBatch) {
+      note += `${batchDomains.length} domain(s) will be processed in this single Pass 3b stage.\n`;
+      note += `Per-domain files are REQUIRED regardless of domain count — they enable domain-scoped \`paths\` glob targeting for rules.\n\n`;
+    } else {
+      note += `This Pass 3 stage has been sub-divided into ${totalBatches} batches to avoid context overflow.\n`;
+      note += `**You are processing batch ${batchIndex + 1} of ${totalBatches}.**\n\n`;
+    }
 
     if (stageKind === "3b") {
-      note += `**Domains in THIS batch**: ${domainList}\n\n`;
-      note += `**Rules for this batch**:\n`;
-      note += `1. CLAUDE.md and all common standard/ files (00.core/, 30.security-db/, 40.infra/, etc.) are ALREADY GENERATED by the 3b-core stage. DO NOT regenerate them.\n`;
-      note += `2. Generate standard/ entries ONLY for the domains listed above — one section per domain.\n`;
-      note += `3. Generate .claude/rules/ (via staging-override path) — ONLY domain-specific rule files for the domains listed above. Common rules are already generated by 3b-core.\n`;
-      note += `4. DO NOT generate standard/ or rules/ files for domains NOT in the above list — those are/will be processed in other batches.\n`;
-      note += `5. If a file you are about to write already exists with substantive content (Rule B), skip it silently — print \`[SKIP] <path>\` and move on.\n`;
+      note += isSingleBatch
+        ? `**Domains in scope (all ${batchDomains.length})**: ${domainList}\n\n`
+        : `**Domains in THIS batch**: ${domainList}\n\n`;
+      // Always show per-domain target paths so the LLM follows the
+      // typed sub-folder convention without inferring from domain name.
+      note += `**Per-domain target paths (always under \`{type}/\` sub-folder — \`backend\` or \`frontend\`):**\n`;
+      for (const d of batchDomains) {
+        note += `- \`${d}\` → \`${stdPathFor(d)}\` and \`${rulePathFor(d)}\`\n`;
+      }
+      note += `\n`;
+      note += `**Rules**:\n`;
+      if (isSingleBatch) {
+        // Single-batch (≤15 domains): common files AND per-domain files in same stage.
+        note += `1. Generate ALL common files (CLAUDE.md + standard/00.core/* + standard/10.backend/* + standard/30.security-db/* + standard/40.infra/* + standard/80.verification/* + .claude/rules/00.core/* + .claude/rules/10.backend/* + .claude/rules/30.security-db/* + .claude/rules/40.infra/* + .claude/rules/50.sync/*) per the stack pass3 template.\n`;
+        note += `2. **ALSO** create ONE NEW per-domain standard file PER domain listed above at \`claudeos-core/standard/70.domains/{type}/{domain}.md\` (use the exact \`{type}\` shown in the per-domain target paths above). **Expected output: ${batchDomains.length} new file(s) under \`70.domains/{type}/\`** — one per domain. Do NOT inline these into the common standards (00.core/, 10.backend/, etc.); per-domain files are DOMAIN-scoped while common files are TOPIC-based, and they must live at separate paths so per-domain rules can scope to them via \`paths\` glob.\n`;
+        note += `3. **ALSO** create ONE NEW per-domain rule file PER domain listed above at \`.claude/rules/70.domains/{type}/{domain}-rules.md\` (via staging-override path \`claudeos-core/generated/.staged-rules/70.domains/{type}/{domain}-rules.md\`). Each rule file MUST have a \`paths\` frontmatter glob scoped to that domain's source directories so the rule auto-loads only when editing the relevant files.\n`;
+        note += `4. Per-domain file generation is MANDATORY even for ${batchDomains.length}-domain projects (any size below the 15-domain batch threshold). The convention is uniform across all project sizes for consistency: same dirtree shape regardless of scale.\n`;
+        note += `5. Rule B idempotent skip applies — if a per-domain file already exists with substantive content, print \`[SKIP] <path>\` and continue.\n`;
+      } else {
+        // Multi-batch (>15 domains): common files in 3b-core, per-domain in batch stages.
+        note += `1. CLAUDE.md and all common standard/ files (00.core/, 30.security-db/, 40.infra/, etc.) are ALREADY GENERATED by the 3b-core stage. DO NOT regenerate them.\n`;
+        note += `2. Create ONE NEW per-domain standard file PER domain listed above at \`claudeos-core/standard/70.domains/{type}/{domain}.md\` (use the exact \`{type}\` shown in the per-domain target paths above — \`backend\` or \`frontend\`). **Expected output: ${batchDomains.length} new files** — one per domain in this batch. Do NOT inline these into the common files generated by 3b-core; common files are TOPIC-based, per-domain files are DOMAIN-scoped and must live at separate paths so per-domain rules can scope to them via \`paths\` glob.\n`;
+        note += `3. Create ONE NEW per-domain rule file PER domain listed above at \`.claude/rules/70.domains/{type}/{domain}-rules.md\` (via staging-override path \`claudeos-core/generated/.staged-rules/70.domains/{type}/{domain}-rules.md\`). Each rule file MUST have a \`paths\` frontmatter glob scoped to that domain's source directories so the rule auto-loads only when editing the relevant files. Common rules are already generated by 3b-core — do NOT regenerate.\n`;
+        note += `4. DO NOT generate standard/ or rules/ files for domains NOT in the above list — those are/will be processed in other batches.\n`;
+        note += `5. Rule B idempotent skip applies ONLY to files at the per-domain paths shown above for THIS batch's domains — i.e. resume after a crash. **Do NOT use Rule B as justification for skipping the entire batch** because common files at OTHER paths exist (those are out of scope for this batch). If a per-domain target file does NOT exist for a batch domain, you MUST generate it; emitting "0 new files" for the whole batch when domains were assigned to you is a critical Pass 3 failure mode.\n`;
+      }
     } else if (stageKind === "3c") {
-      note += `**Domains in THIS batch**: ${domainList}\n\n`;
-      note += `**Rules for this batch**:\n`;
-      note += `1. ALL guide/ files (01.onboarding, 02.usage, 03.troubleshooting, 04.architecture) are ALREADY GENERATED by the 3c-core stage. DO NOT regenerate.\n`;
-      note += `2. Common skills (00.shared/, orchestrator SKILL.md) are ALREADY GENERATED by 3c-core. DO NOT regenerate.\n`;
-      note += `3. Generate skills/ entries ONLY for the domains listed above — typically under 10.backend-crud/ or 20.frontend-page/ with a per-domain subdirectory.\n`;
-      note += `4. DO NOT generate skills for domains NOT in the above list.\n`;
-      note += `5. Rule B idempotent skip applies: if a skill file already exists, print \`[SKIP] <path>\` and move on.\n`;
+      note += isSingleBatch
+        ? `**Domains in scope (all ${batchDomains.length})**: ${domainList}\n\n`
+        : `**Domains in THIS batch**: ${domainList}\n\n`;
+      note += `**Rules**:\n`;
+      if (isSingleBatch) {
+        // Single-batch (≤15 domains): ALL of 3c — guides + common skills + per-domain skill notes — in one stage.
+        note += `1. Generate ALL guide/ files (01.onboarding, 02.usage, 03.troubleshooting, 04.architecture) per the stack pass3 template.\n`;
+        note += `2. Generate common skills: \`claudeos-core/skills/00.shared/MANIFEST.md\` + the category orchestrator(s) at \`claudeos-core/skills/{category}/01.scaffold-*-feature.md\` + their sub-skill files under \`{category}/scaffold-*-feature/\`.\n`;
+        note += `3. **ALSO** generate \`claudeos-core/skills/{category}/02.domains.md\` orchestrator (sibling to the \`domains/\` sub-folder) — REQUIRED for ALL projects regardless of domain count, mirrors the canonical \`01.scaffold-*-feature.md\` ↔ \`scaffold-*-feature/\` pattern.\n`;
+        note += `4. **ALSO** generate per-domain skill notes at \`claudeos-core/skills/{category}/domains/{domain}.md\` for EACH of the ${batchDomains.length} domain(s). **Expected output: ${batchDomains.length} new file(s) under \`{category}/domains/\`** — content describes domain-specific anti-patterns, dependencies, naming quirks. Per-domain skill generation is MANDATORY even for ${batchDomains.length}-domain projects (the convention is uniform across all project sizes).\n`;
+        note += `5. MUST register every newly created skill file in \`00.shared/MANIFEST.md\` (orchestrator + sub-skills + 02.domains.md + per-domain notes).\n`;
+        note += `6. Rule B idempotent skip applies — if a skill file already exists, print \`[SKIP] <path>\` and move on.\n`;
+      } else {
+        // Multi-batch (>15 domains): guides+common skills in 3c-core, per-domain in batch stages.
+        note += `1. ALL guide/ files (01.onboarding, 02.usage, 03.troubleshooting, 04.architecture) are ALREADY GENERATED by the 3c-core stage. DO NOT regenerate.\n`;
+        note += `2. Common skills (00.shared/, orchestrator SKILL.md) and \`02.domains.md\` orchestrator are ALREADY GENERATED by 3c-core. DO NOT regenerate.\n`;
+        note += `3. Generate per-domain skill notes ONLY for the domains listed above at \`claudeos-core/skills/{category}/domains/{domain}.md\` — typically under 10.backend-crud/ or 20.frontend-page/.\n`;
+        note += `4. DO NOT generate skills for domains NOT in the above list.\n`;
+        note += `5. Rule B idempotent skip applies: if a skill file already exists, print \`[SKIP] <path>\` and move on.\n`;
+      }
     }
 
     if (!isLastBatch) {
@@ -337,7 +446,7 @@ async function runPass3Split(ctx) {
       coreNote += `   - claudeos-core/standard/00.core/*.md (project overview, architecture, conventions)\n`;
       coreNote += `   - claudeos-core/standard/30.security-db/*.md\n`;
       coreNote += `   - claudeos-core/standard/40.infra/*.md\n`;
-      coreNote += `   - claudeos-core/standard/50.verification/*.md\n`;
+      coreNote += `   - claudeos-core/standard/80.verification/*.md\n`;
       coreNote += `   - claudeos-core/standard/90.optional/*.md\n`;
       coreNote += `   - (stack-specific common sections as defined in the pass3 template)\n`;
       coreNote += `3. ALL rules files (via staging-override path .claude/rules → generated/.staged-rules):\n`;
@@ -356,11 +465,13 @@ async function runPass3Split(ctx) {
       coreNote += `   - claudeos-core/guide/04.architecture/*.md\n`;
       coreNote += `2. COMMON skills only:\n`;
       coreNote += `   - claudeos-core/skills/00.shared/*\n`;
-      coreNote += `   - top-level orchestrator SKILL.md files (e.g. \`10.backend-crud/SKILL.md\` without any subfolder)\n\n`;
+      coreNote += `   - top-level orchestrator SKILL.md files (e.g. \`10.backend-crud/SKILL.md\` without any subfolder)\n`;
+      coreNote += `3. **Per-domain orchestrator** (REQUIRED whenever batches are non-empty — i.e. ${totalDomains} domains will be processed): for EACH active skill category that will receive per-domain notes, generate the sibling orchestrator file at \`claudeos-core/skills/{category}/02.domains.md\`. The basename stem (\`domains\`) MUST match the \`domains/\` sub-folder name so \`content-validator\`'s standard orchestrator-stem matching covers all sub-skills directly. The orchestrator's content describes the per-domain notes pattern, lists the ${totalDomains} domains that will be processed, and links to \`00.shared/MANIFEST.md\`. Generate it BEFORE 3c-N batches run so it's already in place when sub-skills land. Numbered \`02.\` because \`01.scaffold-*-feature.md\` already occupies the \`01.\` slot at the category root.\n\n`;
       coreNote += `**What NOT to generate in ${stageKind}-core**:\n`;
       coreNote += `- Per-domain skill sub-directories (e.g. \`10.backend-crud/scaffold-order-feature/\`) — those belong to 3c-1, 3c-2, ... batch stages.\n`;
+      coreNote += `- Per-domain note files (\`10.backend-crud/domains/{domain}.md\`) — those belong to 3c-N batch stages. ${stageKind}-core only generates the parent ORCHESTRATOR (\`02.domains.md\`).\n`;
       coreNote += `- Anything under plan/, database/, mcp-guide/ — those belong to 3d.\n\n`;
-      coreNote += `**Per-domain skills will be generated in subsequent 3c-1, 3c-2, ... batch stages.**\n`;
+      coreNote += `**Per-domain skill notes will be generated in subsequent 3c-1, 3c-2, ... batch stages, under each category's \`domains/\` sub-folder.**\n`;
     }
 
     coreNote += `\nIf you find yourself about to generate a domain-specific file in this stage: STOP. Emit \`[DEFER] <path> — will be generated in 3b-N / 3c-N batch\` and move on.\n\n`;
@@ -550,15 +661,23 @@ async function runPass3Split(ctx) {
       ? `domain batch ${bi + 1}/${batches.length} (${batchDomains.length} domains)`
       : "core files (CLAUDE.md + standard + rules)";
 
-    // Per-batch prompt: inject into the original 3b header the list of domains scoped to this batch.
-    // In multi-batch mode every batch generates "domain-specific files only" (common files handled in 3b-core).
-    const batchScopeNote = isBatched
-      ? buildBatchScopeNote("3b", bi, batches.length, batchDomains)
-      : "";
+    // v2.4.0 — Per-domain scope note ALWAYS injected (single OR multi-batch).
+    //
+    // Previously single-batch projects (≤15 domains) skipped the scope note,
+    // and the stack pass3 template alone didn't mandate per-domain file
+    // generation under `70.domains/{type}/`. As a result, small projects
+    // got common standards but no per-domain files — inconsistent with
+    // multi-batch projects and breaking the uniform-convention contract.
+    //
+    // The note text itself branches on isSingleBatch internally:
+    //   - Single batch: "Generate common files AND per-domain files"
+    //   - Multi batch:  "Per-domain only (common files done in 3b-core)"
+    const batchScopeNote = buildBatchScopeNote("3b", bi, batches.length, batchDomains);
     const baseprompt = buildStagePrompt("pass3b-core-header.md", true);
-    const promptWithScope = batchScopeNote
-      ? baseprompt.replace(/\n## Scope of this step/, `\n${batchScopeNote}\n## Scope of this step`)
-      : baseprompt;
+    const promptWithScope = baseprompt.replace(
+      /\n## Scope of this step/,
+      `\n${batchScopeNote}\n## Scope of this step`
+    );
 
     await runStage(stageId, label, promptWithScope, {
       expectsStagedRules: true,
@@ -632,13 +751,16 @@ async function runPass3Split(ctx) {
       ? `domain skills batch ${bi + 1}/${batches.length} (${batchDomains.length} domains)`
       : "skills and guides";
 
-    const batchScopeNote = isBatched
-      ? buildBatchScopeNote("3c", bi, batches.length, batchDomains)
-      : "";
+    // v2.4.0 — Per-domain skill scope note ALWAYS injected (single OR multi-batch).
+    // Same rationale as Pass 3b: small projects need per-domain skill notes
+    // (`{category}/domains/{domain}.md`) and the `02.domains.md` orchestrator
+    // for uniform layout across all project sizes.
+    const batchScopeNote = buildBatchScopeNote("3c", bi, batches.length, batchDomains);
     const baseprompt = buildStagePrompt("pass3c-skills-guide-header.md", true);
-    const promptWithScope = batchScopeNote
-      ? baseprompt.replace(/\n## Scope of this step/, `\n${batchScopeNote}\n## Scope of this step`)
-      : baseprompt;
+    const promptWithScope = baseprompt.replace(
+      /\n## Scope of this step/,
+      `\n${batchScopeNote}\n## Scope of this step`
+    );
 
     await runStage(stageId, label, promptWithScope, {
       expectsStagedRules: true, // skills occasionally include rule files
@@ -897,15 +1019,26 @@ function ensureDirectories() {
     ".claude/rules/50.sync",
     "claudeos-core/generated",
     "claudeos-core/standard/00.core",
-    "claudeos-core/standard/10.backend-api",
-    "claudeos-core/standard/20.frontend-ui",
+    "claudeos-core/standard/10.backend",
+    "claudeos-core/standard/20.frontend",
     "claudeos-core/standard/30.security-db",
     "claudeos-core/standard/40.infra",
-    "claudeos-core/standard/50.verification",
+    "claudeos-core/standard/80.verification",
     "claudeos-core/standard/90.optional",
     "claudeos-core/skills/00.shared",
     "claudeos-core/skills/10.backend-crud/scaffold-crud-feature",
+    // v2.4.0 — `domains/` sub-folder under each per-domain skill category.
+    // Pre-created so Pass 3c-N has a stable destination for per-domain
+    // skill notes (`{category}/domains/{domain}.md`) and so the convention
+    // is visible in the post-init dirtree alongside `scaffold-*-feature/`.
+    // The `02.domains.md` orchestrator (sibling at category root) is
+    // generated by Pass 3c-core, not pre-created — the file content is
+    // project-specific. Empty pre-created `domains/` folders are
+    // harmless on filesystems that allow them and self-document the
+    // convention.
+    "claudeos-core/skills/10.backend-crud/domains",
     "claudeos-core/skills/20.frontend-page/scaffold-page-feature",
+    "claudeos-core/skills/20.frontend-page/domains",
     "claudeos-core/skills/50.testing",
     "claudeos-core/skills/90.experimental",
     "claudeos-core/guide/01.onboarding",
@@ -916,6 +1049,28 @@ function ensureDirectories() {
     "claudeos-core/mcp-guide",
     "claudeos-core/memory",
     ".claude/rules/60.memory",
+    // v2.4.0 — 80.verification rules (mirror of standard/80.verification).
+    // Pre-created to give Pass 3 LLM a stable destination for verification
+    // rules (testing strategy, build verification reminders that auto-load
+    // when editing test files / build configs). Without this, prior runs
+    // would create them at the LEGACY 50.verification path (cross-namespace
+    // contamination from standard/50.verification), now corrected to the
+    // unified 80.* numbering.
+    ".claude/rules/80.verification",
+    // v2.4.0 — 70.domains/ canonical per-domain folder, ALWAYS typed.
+    //   - PLURAL folder (collection of N per-domain files)
+    //   - 70 number to avoid 60.* collision with 60.memory
+    //   - ALWAYS uses `{type}/` sub-folder (`backend/` or `frontend/`)
+    //     regardless of single/multi-stack. Uniform convention prevents
+    //     migration when a single-stack project later adds the other
+    //     stack, and gives validators a single pattern to recognize.
+    //   - Pre-created so Pass 3 LLM has a stable destination for
+    //     `claudeos-core/standard/70.domains/{type}/{domain}.md` and
+    //     `.claude/rules/70.domains/{type}/{domain}-rules.md` writes.
+    "claudeos-core/standard/70.domains/backend",
+    "claudeos-core/standard/70.domains/frontend",
+    ".claude/rules/70.domains/backend",
+    ".claude/rules/70.domains/frontend",
   ];
   for (const d of dirs) {
     ensureDir(path.join(PROJECT_ROOT, d));

package/content-validator/index.js

@@ -453,10 +453,21 @@ async function main() {
   // distinctive signal that essentially never appears in ordinary
   // identifiers (lowercase `xxx` CAN appear in words like `taxXxxRate`,
   // but three uppercase X's do not occur outside placeholder convention).
+  // v2.4.0 — Ellipsis (`...`) added as a placeholder marker.
+  //
+  // LLMs commonly use `...` to denote "any subdirectory" in illustrative
+  // path examples, e.g. `src/app/api/.../route.ts` to mean "any API
+  // route under app/api/". Treating these as STALE_PATH false-positives
+  // because `...` doesn't match the literal directory regex `[^/]+\.`,
+  // and because `...` can never be a real directory name (filesystems
+  // refuse it on most platforms — `.` and `..` are the only legal
+  // dot-only directory names). Three consecutive dots in a path segment
+  // are unambiguous placeholder signal.
   const hasPlaceholder = (p) =>
     /\{[^}]+\}/.test(p) ||       // {domain} style
     /X{3,}/.test(p) || /Xxx/.test(p) ||  // XXX+ anywhere, or Xxx token
-    /\*/.test(p);                // glob star
+    /\*/.test(p) ||              // glob star
+    /\/\.\.\.\//.test(p);        // /.../ ellipsis path segment (v2.4.0)
 
   // File-level exclusion: some generated rule files are DESIGNED to cite
   // convention-trap paths as teaching examples — they tell the reader
@@ -480,10 +491,55 @@ async function main() {
   //     denylist primed the LLM to cite those exact paths as
   //     educational examples (the denylist has since been removed;
   //     this exclusion is the validator-side defense-in-depth).
+  //   - 00.core/51.doc-writing-rules.md — the documentation writing
+  //     rules file (v2.4.0). Same meta-doc class as 52.ai-work-rules.md:
+  //     it teaches "verify file paths before writing them in documents"
+  //     and naturally cites example paths (`src/middleware.ts`,
+  //     `src/app/api/<route>/route.ts`) as illustrations of the rule.
+  //     Those examples are NOT path claims — they are the lesson. The
+  //     content-blind validator would otherwise flag every cited example
+  //     as STALE_PATH on every project that doesn't happen to contain
+  //     all the cited illustrative files. Excluded for the same reason
+  //     and via the same mechanism as 52.ai-work-rules.md.
   const PATH_CLAIM_EXCLUDE_FILES = new Set([
     "00.core/52.ai-work-rules.md",
+    "00.core/51.doc-writing-rules.md",
   ]);
 
+  // v2.4.0 — Resolve a `src/...` path claim against monorepo workspaces.
+  //
+  // Pre-v2.4.0 the validator only checked `<ROOT>/<claimed>` directly,
+  // which produced false-positive STALE_PATH advisories on Turborepo /
+  // pnpm-workspace projects where source files live under
+  // `apps/<app-name>/src/...` or `packages/<pkg-name>/src/...`. A rule
+  // citing `src/app/layout.tsx` is the natural single-app shorthand
+  // even when the actual file is at `apps/<app-name>/src/app/layout.tsx`.
+  //
+  // Resolution order (first match wins):
+  //   1. Direct: `<ROOT>/<claimed>` (single-app project)
+  //   2. Monorepo apps: `<ROOT>/apps/*/<claimed>`
+  //   3. Monorepo packages: `<ROOT>/packages/*/<claimed>`
+  //
+  // Returns true on first match, false if no match found anywhere.
+  // The monorepo fallback only fires for paths starting with `src/`,
+  // which is the conventional workspace-relative form. Non-`src/` paths
+  // (e.g., `claudeos-core/skills/...`) are checked direct-only.
+  function resolvePathClaim(ROOT, claimed) {
+    if (fs.existsSync(path.join(ROOT, claimed))) return true;
+    if (!claimed.startsWith("src/")) return false;
+    for (const workspace of ["apps", "packages"]) {
+      const wsDir = path.join(ROOT, workspace);
+      let entries;
+      try { entries = fs.readdirSync(wsDir, { withFileTypes: true }); }
+      catch (_e) { continue; }
+      for (const entry of entries) {
+        if (!entry.isDirectory()) continue;
+        if (fs.existsSync(path.join(wsDir, entry.name, claimed))) return true;
+      }
+    }
+    return false;
+  }
+
   // Strip fenced code blocks (``` and ~~~) so examples inside code
   // blocks don't trigger the check — they're illustrations, not claims.
   function stripFences(text) {
@@ -536,8 +592,7 @@ async function main() {
         seen.add(claimed);
         if (hasPlaceholder(claimed)) continue;
         pathClaimsChecked++;
-        const absolutePath = path.join(ROOT, claimed);
-        if (!fs.existsSync(absolutePath)) {
+        if (!resolvePathClaim(ROOT, claimed)) {
           pathClaimErrors++;
           errors.push({
             file: rel(file),
@@ -646,8 +701,13 @@ async function main() {
       // file of the form `skills/{category}/*{parent}*.md` (excluding
       // the sub-skill itself) counts as a plausible orchestrator.
       function orchestratorFor(subSkillPath) {
+        // Sub-skill path forms accepted (v2.4.0 generalization):
+        //   skills/{category}/{parent-stem}/NN.{name}.md   (legacy NN. prefix)
+        //   skills/{category}/{parent-stem}/SKILL.md       (v2.4.0 SKILL.md convention)
+        //   skills/{category}/{parent-stem}/{name}.md      (no NN. prefix)
+        // Captures `parent-stem` and the category directory.
         const m = subSkillPath.match(
-          /^(claudeos-core\/skills\/[^/]+\/)([^/]+)\/\d+\.[^/]+\.md$/
+          /^(claudeos-core\/skills\/[^/]+\/)([^/]+)\/(?:\d+\.)?[^/]+\.md$/
         );
         if (!m) return null;
         return { categoryDir: m[1], stem: m[2] };
@@ -657,15 +717,47 @@ async function main() {
         // basename (minus leading number + dot) matches the sub-skill
         // parent stem. This accepts `01.scaffold-crud-feature.md`,
         // `scaffold-crud-feature.md`, etc.
+        // v2.4.0: a category-level `SKILL.md` (the orchestrator file
+        // colocated with `{category}/SKILL.md`) is treated as the
+        // orchestrator for ALL sub-skills under that category — this
+        // matches the new generator convention where each category has
+        // a single top-level orchestrator at `{category}/SKILL.md`.
         if (!ref.startsWith(categoryDir)) return false;
         const tail = ref.slice(categoryDir.length);
         // Must be a sibling file, not a nested path.
         if (tail.includes("/")) return false;
+        // v2.4.0 SKILL.md convention: a category-level SKILL.md covers
+        // every sub-skill in that category.
+        if (tail === "SKILL.md") return true;
         // Strip leading "NN." if present, then compare stem.
         const base = tail.replace(/^\d+\./, "").replace(/\.md$/, "");
         return base === stem;
       }
 
+      // Pre-compute: is any MANIFEST.md (the global skill registry)
+      // referenced anywhere in CLAUDE.md? Used as an additional
+      // sub-skill coverage rule below.
+      //
+      // Observed scenario: Pass 3c sometimes invents new sub-skill
+      // folder structures (e.g. `{category}/domains/{domain}.md` for
+      // per-domain notes) that weren't anticipated by the orchestrator
+      // pattern (which expects `{category}/{parent-stem}/{name}.md` paired
+      // with `{category}/{parent-stem}.md`). When this happens, every new
+      // sub-skill registration drifts because no sibling orchestrator exists.
+      //
+      // The architectural intent is that MANIFEST.md IS the registry — if
+      // CLAUDE.md §6 tells the reader "see MANIFEST.md for the full list",
+      // the reader can navigate to find every sub-skill. So mentioning
+      // MANIFEST.md anywhere in CLAUDE.md covers ALL sub-skill paths
+      // transitively. Top-level skills (direct `{category}/{file}.md`
+      // entries — those that don't match `orchestratorFor`) still require
+      // direct mention; this exception only applies to deep paths.
+      //
+      // Note: `referenced` Set above filters out MANIFEST.md entries (line
+      // 666), so we must scan the raw mdStripped text directly to detect
+      // MANIFEST.md mention.
+      const manifestReferencedGlobally = /`claudeos-core\/skills\/[\w\-./]*MANIFEST\.md`/.test(mdStripped);
+
       for (const p of registered) {
         if (referenced.has(p)) continue;              // direct mention → OK
 
@@ -676,6 +768,7 @@ async function main() {
             isOrchestratorReferenced(ref, oc)
           );
           if (orchestratorMentioned) continue;        // covered via orchestrator
+          if (manifestReferencedGlobally) continue;   // covered via global MANIFEST
         }
 
         manifestErrors++;

package/health-checker/index.js

@@ -61,11 +61,29 @@ function main() {
   console.log();
 
   // ─── [1-4] Run verification tools sequentially ────────────────────
+  //
+  // Tool status tiers (3-way):
+  //   - default       : non-zero exit → "fail" (❌, sets hasErr, blocks `health` exit code)
+  //   - warnOnly:true  : non-zero exit → "warn" (⚠️, does not set hasErr)
+  //   - softFail:true  : non-zero exit → "advisory" (ℹ️, does not set hasErr)
+  //
+  // The `softFail` tier (v2.4.0) was added for `content-validator` after
+  // user feedback: its findings are documentation quality notes
+  // (STALE_PATH suggestions, MANIFEST_DRIFT, NO_BAD_EXAMPLE) not generation
+  // failures, but pre-fix it surfaced as "❌ fail" alongside the
+  // "non-fatal" message — a confusing dual signal. `ℹ️ advisory` separates
+  // the visual from real structural failures (plan-validator,
+  // sync-checker, manifest-generator).
+  //
+  // `warnOnly` (existing) and `softFail` (new) are functionally similar at
+  // the gate level; the tier name encodes intent: warn = "watch this",
+  // advisory = "review when convenient". Both keep the health-check gate
+  // green.
   const tools = [
-    { name: "plan-validator",      script: path.join(TOOLS, "plan-validator/index.js"),      desc: "Plan consistency"           },
-    { name: "sync-checker",        script: path.join(TOOLS, "sync-checker/index.js"),        desc: "Sync status"                },
-    { name: "content-validator",   script: path.join(TOOLS, "content-validator/index.js"),   desc: "Content quality"            },
-    { name: "pass-json-validator", script: path.join(TOOLS, "pass-json-validator/index.js"), desc: "JSON format", warnOnly: true },
+    { name: "plan-validator",      script: path.join(TOOLS, "plan-validator/index.js"),      desc: "Plan consistency"                          },
+    { name: "sync-checker",        script: path.join(TOOLS, "sync-checker/index.js"),        desc: "Sync status"                               },
+    { name: "content-validator",   script: path.join(TOOLS, "content-validator/index.js"),   desc: "Content quality", softFail: true            },
+    { name: "pass-json-validator", script: path.join(TOOLS, "pass-json-validator/index.js"), desc: "JSON format",     warnOnly: true            },
   ];
 
   const results = [];
@@ -88,6 +106,9 @@ function main() {
     if (r.ok) {
       console.log(" ✅");
       results.push({ name: t.name, status: "pass" });
+    } else if (t.softFail) {
+      console.log(" ℹ️");
+      results.push({ name: t.name, status: "advisory" });
     } else if (t.warnOnly) {
       console.log(" ⚠️");
       results.push({ name: t.name, status: "warn" });
@@ -101,15 +122,28 @@ function main() {
   // ─── Results summary ──────────────────────────────────────────
   console.log("\n  ══════════════════════════════");
   results.forEach((r) => {
-    const icon = r.status === "pass" ? "✅" : r.status === "fail" ? "❌" : r.status === "warn" ? "⚠️" : "⏭️";
+    const icon = r.status === "pass" ? "✅"
+      : r.status === "fail" ? "❌"
+      : r.status === "warn" ? "⚠️"
+      : r.status === "advisory" ? "ℹ️"
+      : "⏭️";
     console.log(`  ${icon} ${r.name.padEnd(22)} ${r.status}`);
   });
   console.log("  ──────────────────────────────");
-  console.log(
-    hasErr
-      ? `  ⚠️  ${results.filter((r) => r.status === "fail").length} failed`
-      : "  ✅ All systems operational"
-  );
+  // Summary line: distinguish real failures (block the gate) from
+  // advisory/warn results (informational, gate stays green).
+  const failCount = results.filter((r) => r.status === "fail").length;
+  const advisoryCount = results.filter((r) => r.status === "advisory").length;
+  const warnCount = results.filter((r) => r.status === "warn").length;
+  if (hasErr) {
+    console.log(`  ⚠️  ${failCount} failed`);
+  } else {
+    const tail = [];
+    if (advisoryCount) tail.push(`${advisoryCount} advisory`);
+    if (warnCount) tail.push(`${warnCount} warning`);
+    const suffix = tail.length ? ` (${tail.join(", ")})` : "";
+    console.log(`  ✅ All systems operational${suffix}`);
+  }
   console.log("  ══════════════════════════════\n");
 
   // ─── Update stale-report.json ────────────────────────────