claudekit-cli 4.4.0-dev.6 → 4.4.0-dev.7

package/cli-manifest.json

@@ -1,6 +1,6 @@
 {
-	"version": "4.4.0-dev.6",
-	"generatedAt": "2026-06-06T16:32:28.234Z",
+	"version": "4.4.0-dev.7",
+	"generatedAt": "2026-06-08T14:14:02.326Z",
 	"commands": {
 		"agents": {
 			"name": "agents",

package/dist/index.js

@@ -63853,7 +63853,7 @@ var package_default;
 var init_package = __esm(() => {
   package_default = {
     name: "claudekit-cli",
-    version: "4.4.0-dev.6",
+    version: "4.4.0-dev.7",
     description: "CLI tool for bootstrapping and updating ClaudeKit projects",
     type: "module",
     repository: {
@@ -108765,12 +108765,13 @@ async function executeSyncMerge(ctx) {
   try {
     const trackedFiles = ctx.syncTrackedFiles;
     const upstreamDir = ctx.options.global ? join136(ctx.extractDir, ".claude") : ctx.extractDir;
+    let sourceMetadata = null;
     let deletions = [];
     try {
       const sourceMetadataPath = join136(upstreamDir, "metadata.json");
       if (await import_fs_extra38.pathExists(sourceMetadataPath)) {
         const content = await readFile59(sourceMetadataPath, "utf-8");
-        const sourceMetadata = JSON.parse(content);
+        sourceMetadata = JSON.parse(content);
         deletions = sourceMetadata.deletions || [];
       }
     } catch (error) {
@@ -108784,13 +108785,43 @@ async function executeSyncMerge(ctx) {
     logger.info("Analyzing file changes...");
     const plan = await SyncEngine.createSyncPlan(filteredTrackedFiles, ctx.claudeDir, upstreamDir);
     displaySyncPlan(plan);
-    if (plan.autoUpdate.length === 0 && plan.needsReview.length === 0) {
+    const hasSyncUpdates = plan.autoUpdate.length > 0 || plan.needsReview.length > 0;
+    const hasDeletionPatterns = deletions.length > 0;
+    if (!hasSyncUpdates && !hasDeletionPatterns) {
       ctx.prompts.note("All files are up to date or user-owned.", "No Changes Needed");
       return { ...ctx, cancelled: true };
     }
     const backupDir = PathResolver.getBackupDir();
     await createBackup(ctx.claudeDir, trackedFiles, backupDir);
     logger.success(`Backup created at ${import_picocolors26.default.dim(backupDir)}`);
+    if (sourceMetadata?.deletions && sourceMetadata.deletions.length > 0) {
+      try {
+        const deletionResult = await handleDeletions(sourceMetadata, ctx.claudeDir, ctx.kitType);
+        if (deletionResult.deletedPaths.length > 0) {
+          logger.info(`Removed ${deletionResult.deletedPaths.length} deprecated file(s)`);
+          for (const path17 of deletionResult.deletedPaths) {
+            logger.verbose(`  - ${path17}`);
+          }
+        }
+        if (deletionResult.preservedPaths.length > 0) {
+          logger.verbose(`Preserved ${deletionResult.preservedPaths.length} user-owned file(s)`);
+        }
+        if (!hasSyncUpdates) {
+          if (deletionResult.deletedPaths.length > 0) {
+            ctx.prompts.outro("Config sync completed successfully");
+          } else {
+            ctx.prompts.note("All files are up to date or user-owned.", "No Changes Needed");
+          }
+          return { ...ctx, cancelled: true };
+        }
+      } catch (error) {
+        logger.debug(`Cleanup of deprecated files failed during sync: ${error}`);
+        if (!hasSyncUpdates) {
+          ctx.prompts.note("All files are up to date or user-owned.", "No Changes Needed");
+          return { ...ctx, cancelled: true };
+        }
+      }
+    }
     if (plan.autoUpdate.length > 0) {
       logger.info(`Auto-updating ${plan.autoUpdate.length} file(s)...`);
       let updateSuccess = 0;

package/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "claudekit-cli",
-	"version": "4.4.0-dev.6",
+	"version": "4.4.0-dev.7",
 	"description": "CLI tool for bootstrapping and updating ClaudeKit projects",
 	"type": "module",
 	"repository": {