claude-mycelium 2.0.0 → 2.1.0

package/dist/cli/init.d.ts

@@ -0,0 +1,11 @@
+/**
+ * Init CLI Command
+ *
+ * Initialize .agent-meta/ directory structure
+ * Create default configuration files
+ * Per Phase 7 specification §15
+ */
+import { Command } from 'commander';
+declare const command: Command;
+export default command;
+//# sourceMappingURL=init.d.ts.map

package/dist/cli/init.d.ts.map

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package/dist/cli/init.js

@@ -0,0 +1,97 @@
+/**
+ * Init CLI Command
+ *
+ * Initialize .agent-meta/ directory structure
+ * Create default configuration files
+ * Per Phase 7 specification §15
+ */
+import { Command } from 'commander';
+import chalk from 'chalk';
+import * as fs from 'fs/promises';
+import * as path from 'path';
+import { fileExists } from '../utils/file-utils.js';
+const command = new Command()
+    .name('init')
+    .description('Initialize .agent-meta/ in current directory')
+    .option('--force', 'Reinitialize even if exists')
+    .action(async (options) => {
+    try {
+        await initCommand(options.force);
+    }
+    catch (error) {
+        const message = error instanceof Error ? error.message : 'Unknown error';
+        console.error(chalk.red(`Error: ${message}`));
+        process.exit(1);
+    }
+});
+/**
+ * Initialize .agent-meta/ directory and configuration
+ */
+async function initCommand(force = false) {
+    const metaDir = '.agent-meta';
+    // Check if already initialized
+    if (fileExists(metaDir) && !force) {
+        console.log(chalk.yellow('Already initialized. Use --force to reinitialize.'));
+        return;
+    }
+    // Create directory structure
+    await fs.mkdir(metaDir, { recursive: true });
+    await fs.mkdir(path.join(metaDir, 'traces'), { recursive: true });
+    await fs.mkdir(path.join(metaDir, 'tasks'), { recursive: true });
+    await fs.mkdir(path.join(metaDir, 'locks'), { recursive: true });
+    // Create initial config file
+    await fs.writeFile(path.join(metaDir, 'config.json'), JSON.stringify({
+        version: '2.0.0',
+        created_at: new Date().toISOString(),
+        error_provider: 'file',
+        error_file: '.agent-meta/_errors.json',
+        ci_command: 'npm test && npm run lint',
+        spawn_count: 0,
+        last_gc_at_spawn: 0,
+    }, null, 2) + '\n');
+    // Create quarantine file
+    await fs.writeFile(path.join(metaDir, '_quarantine.json'), JSON.stringify({
+        updated_at: new Date().toISOString(),
+        entries: [],
+    }, null, 2) + '\n');
+    // Create inhibitors file
+    await fs.writeFile(path.join(metaDir, '_inhibitors.ndjson'), '');
+    // Create errors file
+    await fs.writeFile(path.join(metaDir, '_errors.json'), JSON.stringify({
+        updated_at: new Date().toISOString(),
+        errors: [],
+    }, null, 2) + '\n');
+    // Create GC log file
+    await fs.writeFile(path.join(metaDir, '_gc.log'), '');
+    // Add to .gitignore if needed
+    const gitignorePath = '.gitignore';
+    const lockPattern = '.agent-meta/locks/';
+    try {
+        const gitignore = await fs.readFile(gitignorePath, 'utf-8');
+        if (!gitignore.includes(lockPattern)) {
+            await fs.appendFile(gitignorePath, `\n# Claude Mycelium locks (ephemeral)\n${lockPattern}\n`);
+        }
+    }
+    catch {
+        // No .gitignore, create one
+        await fs.writeFile(gitignorePath, `# Claude Mycelium locks (ephemeral)\n${lockPattern}\n`);
+    }
+    // Success message
+    console.log('');
+    console.log(chalk.green('✓ Initialized .agent-meta/'));
+    console.log(chalk.dim('  - Created directory structure (traces, tasks, locks)'));
+    console.log(chalk.dim('  - Created config.json'));
+    console.log(chalk.dim('  - Created _quarantine.json'));
+    console.log(chalk.dim('  - Created _inhibitors.ndjson'));
+    console.log(chalk.dim('  - Created _errors.json'));
+    console.log(chalk.dim('  - Created _gc.log'));
+    console.log(chalk.dim('  - Updated .gitignore'));
+    console.log('');
+    console.log(chalk.bold('Next steps:'));
+    console.log('  1. Set ANTHROPIC_API_KEY environment variable');
+    console.log('  2. Run: npx claude-mycelium gradients ./src');
+    console.log('  3. Check system status: npx claude-mycelium status');
+    console.log('');
+}
+export default command;
+//# sourceMappingURL=init.js.map

package/dist/cli/init.js.map

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package/dist/cli/status.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Status CLI Command
+ *
+ * Display system overview
+ * Show agent count, recent activity
+ */
+import { Command } from 'commander';
+declare const command: Command;
+export default command;
+//# sourceMappingURL=status.d.ts.map

package/dist/cli/status.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/status.js

@@ -0,0 +1,191 @@
+/**
+ * Status CLI Command
+ *
+ * Display system overview
+ * Show agent count, recent activity
+ */
+import { Command } from 'commander';
+import chalk from 'chalk';
+import * as fs from 'fs/promises';
+import * as path from 'path';
+import { fileExists } from '../utils/file-utils.js';
+import { loadConfig } from '../utils/config.js';
+const command = new Command()
+    .name('status')
+    .description('Show system status and recent activity')
+    .option('--json', 'Output as JSON')
+    .action(async (options) => {
+    try {
+        const status = await getSystemStatus();
+        if (options.json) {
+            console.log(JSON.stringify(status, null, 2));
+            return;
+        }
+        // Colorized output
+        console.log('');
+        console.log(chalk.bold('Claude Mycelium Status'));
+        console.log(chalk.dim('─'.repeat(60)));
+        console.log(chalk.bold('Configuration:'));
+        console.log(`  Config version: ${status.config.version}`);
+        console.log(`  Created: ${new Date(status.config.created_at).toLocaleDateString()}`);
+        console.log(`  Error provider: ${status.config.error_provider}`);
+        console.log(chalk.bold('Statistics:'));
+        console.log(`  Total spawns: ${status.spawn_count}`);
+        console.log(`  Last GC at spawn: ${status.last_gc_at_spawn}`);
+        console.log(`  Spawns since GC: ${status.spawn_count - status.last_gc_at_spawn}`);
+        console.log(chalk.bold('Storage:'));
+        console.log(`  Trace events: ${status.trace_event_count}`);
+        console.log(`  Quarantined files: ${status.quarantine_count}`);
+        console.log(`  Inhibitors: ${status.inhibitor_count}`);
+        console.log(`  Errors logged: ${status.error_count}`);
+        if (status.recent_activity.length > 0) {
+            console.log(chalk.bold('Recent Activity (last 5):'));
+            for (const activity of status.recent_activity.slice(0, 5)) {
+                const timeAgo = getTimeAgo(new Date(activity.timestamp));
+                const modeColor = getModeColor(activity.mode);
+                console.log(`  ${chalk[modeColor](activity.mode.padEnd(18))} ${activity.file.substring(0, 35).padEnd(35)} ${timeAgo.padStart(10)}`);
+            }
+        }
+        console.log(chalk.dim('─'.repeat(60)));
+        console.log('');
+    }
+    catch (error) {
+        const message = error instanceof Error ? error.message : 'Unknown error';
+        console.error(chalk.red(`Error: ${message}`));
+        process.exit(1);
+    }
+});
+/**
+ * Get system status
+ */
+async function getSystemStatus() {
+    const config = loadConfig();
+    let traceEventCount = 0;
+    let quarantineCount = 0;
+    let inhibitorCount = 0;
+    let errorCount = 0;
+    const recentActivity = [];
+    // Count trace events
+    const tracesDir = '.agent-meta/traces';
+    if (fileExists(tracesDir)) {
+        try {
+            const entries = await fs.readdir(tracesDir);
+            const traceFiles = entries.filter(f => f.endsWith('.ndjson'));
+            for (const file of traceFiles) {
+                const filePath = path.join(tracesDir, file);
+                try {
+                    const content = await fs.readFile(filePath, 'utf-8');
+                    const lines = content.split('\n').filter(Boolean);
+                    traceEventCount += lines.length;
+                    // Collect recent activity
+                    for (const line of lines) {
+                        try {
+                            const event = JSON.parse(line);
+                            recentActivity.push({
+                                timestamp: event.timestamp,
+                                mode: event.mode,
+                                file: event.file_path,
+                            });
+                        }
+                        catch {
+                            // Skip malformed lines
+                        }
+                    }
+                }
+                catch {
+                    // File read error
+                }
+            }
+        }
+        catch {
+            // Directory read error
+        }
+    }
+    // Count quarantine entries
+    const quarantinePath = '.agent-meta/_quarantine.json';
+    if (fileExists(quarantinePath)) {
+        try {
+            const content = await fs.readFile(quarantinePath, 'utf-8');
+            const quarantine = JSON.parse(content);
+            quarantineCount = (quarantine.entries || []).length;
+        }
+        catch {
+            // File read error
+        }
+    }
+    // Count inhibitors
+    const inhibitorsPath = '.agent-meta/_inhibitors.ndjson';
+    if (fileExists(inhibitorsPath)) {
+        try {
+            const content = await fs.readFile(inhibitorsPath, 'utf-8');
+            const lines = content.split('\n').filter(Boolean);
+            inhibitorCount = lines.length;
+        }
+        catch {
+            // File read error
+        }
+    }
+    // Count errors
+    const errorsPath = '.agent-meta/_errors.json';
+    if (fileExists(errorsPath)) {
+        try {
+            const content = await fs.readFile(errorsPath, 'utf-8');
+            const errors = JSON.parse(content);
+            errorCount = (errors.errors || []).length;
+        }
+        catch {
+            // File read error
+        }
+    }
+    // Sort recent activity by timestamp descending
+    recentActivity.sort((a, b) => new Date(b.timestamp).getTime() - new Date(a.timestamp).getTime());
+    return {
+        config,
+        spawn_count: config.spawn_count,
+        last_gc_at_spawn: config.last_gc_at_spawn,
+        trace_event_count: traceEventCount,
+        quarantine_count: quarantineCount,
+        inhibitor_count: inhibitorCount,
+        error_count: errorCount,
+        recent_activity: recentActivity.slice(0, 10),
+    };
+}
+/**
+ * Get human-readable time ago
+ */
+function getTimeAgo(date) {
+    const now = new Date();
+    const diff = now.getTime() - date.getTime();
+    const seconds = Math.floor(diff / 1000);
+    const minutes = Math.floor(seconds / 60);
+    const hours = Math.floor(minutes / 60);
+    const days = Math.floor(hours / 24);
+    if (days > 0)
+        return `${days}d ago`;
+    if (hours > 0)
+        return `${hours}h ago`;
+    if (minutes > 0)
+        return `${minutes}m ago`;
+    return `${seconds}s ago`;
+}
+/**
+ * Get color for mode
+ */
+function getModeColor(mode) {
+    switch (mode) {
+        case 'error_reducer':
+            return 'red';
+        case 'complexity_reducer':
+            return 'yellow';
+        case 'debt_payer':
+            return 'magenta';
+        case 'stabilizer':
+            return 'green';
+        case 'explorer':
+            return 'cyan';
+        default:
+            return 'blue';
+    }
+}
+export default command;
+//# sourceMappingURL=status.js.map

package/dist/cli/status.js.map

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package/dist/coordination/file-locks.d.ts

@@ -0,0 +1,42 @@
+/**
+ * File-based locking for multi-agent coordination
+ * Uses atomic O_CREAT|O_EXCL flags via fs.open() for race-free lock acquisition
+ *
+ * Reference: ADR-004, second-spec §4.1
+ */
+import type { LockFile, Mode } from '../types/index.js';
+/**
+ * Acquire an exclusive lock on a file
+ * Uses atomic O_CREAT|O_EXCL to prevent races
+ *
+ * @param filePath - File to lock (relative path)
+ * @param agentId - Agent requesting the lock
+ * @param mode - Mode of operation
+ * @param taskId - Optional task ID
+ * @returns true if lock acquired, false if already locked
+ */
+export declare function acquireLock(filePath: string, agentId: string, mode: Mode, taskId?: string): Promise<boolean>;
+/**
+ * Release a lock
+ *
+ * @param filePath - File to unlock
+ * @returns true if lock released, false if not locked by this process
+ */
+export declare function releaseLock(filePath: string): Promise<boolean>;
+/**
+ * Check if a file is locked
+ *
+ * @param filePath - File to check
+ * @returns LockFile if locked and valid, null otherwise
+ */
+export declare function checkLock(filePath: string): Promise<LockFile | null>;
+/**
+ * List all active locks
+ */
+export declare function listLocks(): Promise<LockFile[]>;
+/**
+ * Clean up expired and dead process locks
+ * Returns the number of locks cleaned up
+ */
+export declare function cleanupStaleLocks(): Promise<number>;
+//# sourceMappingURL=file-locks.d.ts.map

package/dist/coordination/file-locks.d.ts.map

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package/dist/coordination/file-locks.js

@@ -0,0 +1,269 @@
+/**
+ * File-based locking for multi-agent coordination
+ * Uses atomic O_CREAT|O_EXCL flags via fs.open() for race-free lock acquisition
+ *
+ * Reference: ADR-004, second-spec §4.1
+ */
+import * as fs from 'fs/promises';
+import * as path from 'path';
+const LOCK_DIR = '.agent-meta/locks';
+const DEFAULT_TIMEOUT_MS = 5 * 60 * 1000; // 5 minutes
+/**
+ * Acquire an exclusive lock on a file
+ * Uses atomic O_CREAT|O_EXCL to prevent races
+ *
+ * @param filePath - File to lock (relative path)
+ * @param agentId - Agent requesting the lock
+ * @param mode - Mode of operation
+ * @param taskId - Optional task ID
+ * @returns true if lock acquired, false if already locked
+ */
+export async function acquireLock(filePath, agentId, mode, taskId) {
+    await ensureLockDir();
+    const lockPath = getLockPath(filePath);
+    const now = new Date();
+    const expiresAt = new Date(now.getTime() + DEFAULT_TIMEOUT_MS);
+    const lockData = {
+        agent_id: agentId,
+        file: filePath,
+        mode,
+        acquired_at: now.toISOString(),
+        expires_at: expiresAt.toISOString(),
+        pid: process.pid,
+        task_id: taskId,
+    };
+    try {
+        // Check for expired lock first and attempt takeover
+        const takenOver = await tryTakeoverExpiredLock(lockPath, lockData);
+        if (takenOver) {
+            return true;
+        }
+        // Atomic creation: wx = O_CREAT|O_EXCL
+        // Will fail if file already exists
+        const fd = await fs.open(lockPath, 'wx');
+        await fd.writeFile(JSON.stringify(lockData, null, 2));
+        await fd.close();
+        return true;
+    }
+    catch (error) {
+        if (error.code === 'EEXIST') {
+            // Lock already exists, check if we can take it over
+            return false;
+        }
+        throw error;
+    }
+}
+/**
+ * Release a lock
+ *
+ * @param filePath - File to unlock
+ * @returns true if lock released, false if not locked by this process
+ */
+export async function releaseLock(filePath) {
+    const lockPath = getLockPath(filePath);
+    try {
+        // Verify we own the lock before releasing
+        const content = await fs.readFile(lockPath, 'utf-8');
+        const lock = JSON.parse(content);
+        if (lock.pid !== process.pid) {
+            // Not our lock
+            return false;
+        }
+        await fs.unlink(lockPath);
+        return true;
+    }
+    catch (error) {
+        if (error.code === 'ENOENT') {
+            // Lock doesn't exist
+            return false;
+        }
+        throw error;
+    }
+}
+/**
+ * Check if a file is locked
+ *
+ * @param filePath - File to check
+ * @returns LockFile if locked and valid, null otherwise
+ */
+export async function checkLock(filePath) {
+    const lockPath = getLockPath(filePath);
+    try {
+        const content = await fs.readFile(lockPath, 'utf-8');
+        const lock = JSON.parse(content);
+        // Check if lock is expired
+        if (isExpired(lock)) {
+            return null;
+        }
+        // Check if process is alive
+        if (!isProcessAlive(lock.pid)) {
+            return null;
+        }
+        return lock;
+    }
+    catch (error) {
+        if (error.code === 'ENOENT') {
+            return null;
+        }
+        throw error;
+    }
+}
+/**
+ * Try to take over an expired or dead process lock
+ *
+ * @param lockPath - Path to lock file
+ * @param newLock - New lock data
+ * @returns true if takeover successful
+ */
+async function tryTakeoverExpiredLock(lockPath, newLock) {
+    try {
+        const content = await fs.readFile(lockPath, 'utf-8');
+        const oldLock = JSON.parse(content);
+        // Check if lock is expired
+        if (isExpired(oldLock)) {
+            await fs.unlink(lockPath);
+            const fd = await fs.open(lockPath, 'wx');
+            await fd.writeFile(JSON.stringify(newLock, null, 2));
+            await fd.close();
+            return true;
+        }
+        // Check if process is dead
+        if (!isProcessAlive(oldLock.pid)) {
+            await fs.unlink(lockPath);
+            const fd = await fs.open(lockPath, 'wx');
+            await fd.writeFile(JSON.stringify(newLock, null, 2));
+            await fd.close();
+            return true;
+        }
+        return false;
+    }
+    catch (error) {
+        if (error.code === 'ENOENT') {
+            // Lock doesn't exist, normal acquisition can proceed
+            return false;
+        }
+        throw error;
+    }
+}
+/**
+ * Check if a lock has expired (5-minute timeout)
+ */
+function isExpired(lock) {
+    const expiresAt = new Date(lock.expires_at);
+    return Date.now() > expiresAt.getTime();
+}
+/**
+ * Check if a process is alive
+ * Uses process.kill(pid, 0) which doesn't actually kill but checks existence
+ */
+function isProcessAlive(pid) {
+    try {
+        // Signal 0 checks if process exists without killing it
+        process.kill(pid, 0);
+        return true;
+    }
+    catch (error) {
+        if (error.code === 'ESRCH') {
+            // Process not found
+            return false;
+        }
+        if (error.code === 'EPERM') {
+            // Process exists but we don't have permission to signal it
+            // This means it's alive
+            return true;
+        }
+        throw error;
+    }
+}
+/**
+ * Get the lock file path for a given file
+ */
+function getLockPath(filePath) {
+    // Sanitize file path to create a unique lock filename
+    const sanitized = filePath.replace(/[^a-zA-Z0-9]/g, '_');
+    return path.join(LOCK_DIR, `${sanitized}.lock`);
+}
+/**
+ * Ensure lock directory exists
+ */
+async function ensureLockDir() {
+    try {
+        await fs.mkdir(LOCK_DIR, { recursive: true });
+    }
+    catch (error) {
+        if (error.code !== 'EEXIST') {
+            throw error;
+        }
+    }
+}
+/**
+ * List all active locks
+ */
+export async function listLocks() {
+    try {
+        await ensureLockDir();
+        const files = await fs.readdir(LOCK_DIR);
+        const locks = [];
+        for (const file of files) {
+            if (!file.endsWith('.lock'))
+                continue;
+            try {
+                const lockPath = path.join(LOCK_DIR, file);
+                const content = await fs.readFile(lockPath, 'utf-8');
+                const lock = JSON.parse(content);
+                // Only include valid locks
+                if (!isExpired(lock) && isProcessAlive(lock.pid)) {
+                    locks.push(lock);
+                }
+            }
+            catch {
+                // Skip invalid lock files
+                continue;
+            }
+        }
+        return locks;
+    }
+    catch (error) {
+        if (error.code === 'ENOENT') {
+            return [];
+        }
+        throw error;
+    }
+}
+/**
+ * Clean up expired and dead process locks
+ * Returns the number of locks cleaned up
+ */
+export async function cleanupStaleLocks() {
+    try {
+        await ensureLockDir();
+        const files = await fs.readdir(LOCK_DIR);
+        let cleaned = 0;
+        for (const file of files) {
+            if (!file.endsWith('.lock'))
+                continue;
+            try {
+                const lockPath = path.join(LOCK_DIR, file);
+                const content = await fs.readFile(lockPath, 'utf-8');
+                const lock = JSON.parse(content);
+                // Remove if expired or process is dead
+                if (isExpired(lock) || !isProcessAlive(lock.pid)) {
+                    await fs.unlink(lockPath);
+                    cleaned++;
+                }
+            }
+            catch {
+                // Skip files we can't process
+                continue;
+            }
+        }
+        return cleaned;
+    }
+    catch (error) {
+        if (error.code === 'ENOENT') {
+            return 0;
+        }
+        throw error;
+    }
+}
+//# sourceMappingURL=file-locks.js.map

package/dist/coordination/file-locks.js.map

@@ -0,0 +1 @@
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