claude-flow 3.5.28 → 3.5.29

package/.claude/helpers/intelligence.cjs

@@ -65,7 +65,8 @@ function bootstrapFromMemoryFiles() {
         var items = fs.readdirSync(candidates[i], { withFileTypes: true, recursive: true });
         for (var j = 0; j < items.length; j++) {
           if (items[j].name === "MEMORY.md") {
-            var fp = items[j].path ? path.join(items[j].path, items[j].name) : path.join(candidates[i], items[j].name);
+            var parentDir = items[j].parentPath || items[j].path || candidates[i];
+            var fp = path.join(parentDir, items[j].name);
             files.push(fp);
           }
         }
@@ -96,15 +97,24 @@ function bootstrapFromMemoryFiles() {
 
 function loadEntries() {
   var store = readJSON(STORE_PATH);
-  if (store && store.entries && store.entries.length > 0) {
-    return store.entries.map(function(e, i) {
+  // Support both formats: flat array or { entries: [...] }
+  var entries = null;
+  if (store) {
+    if (Array.isArray(store) && store.length > 0) {
+      entries = store;
+    } else if (store.entries && store.entries.length > 0) {
+      entries = store.entries;
+    }
+  }
+  if (entries) {
+    return entries.map(function(e, i) {
       return {
         id: e.id || ("entry-" + i),
         content: e.content || e.value || "",
         summary: e.summary || e.key || "",
         category: e.category || e.namespace || "default",
         confidence: e.confidence || 0.5,
-        sourceFile: e.sourceFile || "",
+        sourceFile: e.sourceFile || (e.metadata && e.metadata.sourceFile) || "",
         words: tokenize((e.content || e.value || "") + " " + (e.summary || e.key || "")),
       };
     });

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "claude-flow",
-  "version": "3.5.28",
+  "version": "3.5.29",
   "description": "Ruflo - Enterprise AI agent orchestration for Claude Code. Deploy 60+ specialized agents in coordinated swarms with self-learning, fault-tolerant consensus, vector memory, and MCP integration",
   "main": "dist/index.js",
   "type": "module",
@@ -54,7 +54,6 @@
     "v3:security": "npm run security:audit && npm run security:test"
   },
   "dependencies": {
-    "@ruvector/ruvllm-wasm": "^2.0.0",
     "semver": "^7.6.0",
     "zod": "^3.22.4"
   },

package/v3/@claude-flow/cli/dist/src/init/helpers-generator.js

@@ -663,7 +663,8 @@ export function generateIntelligenceStub() {
         '        var items = fs.readdirSync(candidates[i], { withFileTypes: true, recursive: true });',
         '        for (var j = 0; j < items.length; j++) {',
         '          if (items[j].name === "MEMORY.md") {',
-        '            var fp = items[j].path ? path.join(items[j].path, items[j].name) : path.join(candidates[i], items[j].name);',
+        '            var parentDir = items[j].parentPath || items[j].path || candidates[i];',
+        '            var fp = path.join(parentDir, items[j].name);',
         '            files.push(fp);',
         '          }',
         '        }',
@@ -695,15 +696,24 @@ export function generateIntelligenceStub() {
         '// Load entries from auto-memory-store or bootstrap from MEMORY.md',
         'function loadEntries() {',
         '  var store = readJSON(STORE_PATH);',
-        '  if (store && store.entries && store.entries.length > 0) {',
-        '    return store.entries.map(function(e, i) {',
+        '  // Support both formats: flat array or { entries: [...] }',
+        '  var entries = null;',
+        '  if (store) {',
+        '    if (Array.isArray(store) && store.length > 0) {',
+        '      entries = store;',
+        '    } else if (store.entries && store.entries.length > 0) {',
+        '      entries = store.entries;',
+        '    }',
+        '  }',
+        '  if (entries) {',
+        '    return entries.map(function(e, i) {',
         '      return {',
         '        id: e.id || ("entry-" + i),',
         '        content: e.content || e.value || "",',
         '        summary: e.summary || e.key || "",',
         '        category: e.category || e.namespace || "default",',
         '        confidence: e.confidence || 0.5,',
-        '        sourceFile: e.sourceFile || "",',
+        '        sourceFile: e.sourceFile || (e.metadata && e.metadata.sourceFile) || "",',
         '        words: tokenize((e.content || e.value || "") + " " + (e.summary || e.key || "")),',
         '      };',
         '    });',

package/v3/@claude-flow/cli/dist/src/mcp-client.js

@@ -34,9 +34,6 @@ import { coordinationTools } from './mcp-tools/coordination-tools.js';
 import { browserTools } from './mcp-tools/browser-tools.js';
 // Phase 6: AgentDB v3 controller tools
 import { agentdbTools } from './mcp-tools/agentdb-tools.js';
-// RuVector WASM tools
-import { ruvllmWasmTools } from './mcp-tools/ruvllm-tools.js';
-import { wasmAgentTools } from './mcp-tools/wasm-agent-tools.js';
 /**
  * MCP Tool Registry
  * Maps tool names to their handler functions
@@ -76,9 +73,6 @@ registerTools([
     ...browserTools,
     // Phase 6: AgentDB v3 controller tools
     ...agentdbTools,
-    // RuVector WASM tools
-    ...ruvllmWasmTools,
-    ...wasmAgentTools,
 ]);
 /**
  * MCP Client Error

package/v3/@claude-flow/cli/dist/src/mcp-tools/index.d.ts

@@ -20,6 +20,4 @@ export { transferTools } from './transfer-tools.js';
 export { securityTools } from './security-tools.js';
 export { embeddingsTools } from './embeddings-tools.js';
 export { claimsTools } from './claims-tools.js';
-export { wasmAgentTools } from './wasm-agent-tools.js';
-export { ruvllmWasmTools } from './ruvllm-tools.js';
 //# sourceMappingURL=index.d.ts.map

package/v3/@claude-flow/cli/dist/src/mcp-tools/index.js

@@ -19,6 +19,4 @@ export { transferTools } from './transfer-tools.js';
 export { securityTools } from './security-tools.js';
 export { embeddingsTools } from './embeddings-tools.js';
 export { claimsTools } from './claims-tools.js';
-export { wasmAgentTools } from './wasm-agent-tools.js';
-export { ruvllmWasmTools } from './ruvllm-tools.js';
 //# sourceMappingURL=index.js.map

package/v3/@claude-flow/cli/dist/src/memory/memory-initializer.js

@@ -1315,42 +1315,6 @@ export async function loadEmbeddingModel(options) {
                 loadTime: Date.now() - startTime
             };
         }
-        // Fallback: Check for ruvector ONNX embedder (bundled MiniLM-L6-v2 since v0.2.15)
-        // v0.2.16: LoRA B=0 fix makes AdaptiveEmbedder safe (identity when untrained)
-        // Note: isReady() returns false until first embed() call (lazy init), so we
-        // skip the isReady() gate and verify with a probe embed instead.
-        const ruvector = await import('ruvector').catch(() => null);
-        if (ruvector?.initOnnxEmbedder) {
-            try {
-                await ruvector.initOnnxEmbedder();
-                // Fallback: OptimizedOnnxEmbedder (raw ONNX, lazy-inits on first embed)
-                const onnxEmb = ruvector.getOptimizedOnnxEmbedder?.();
-                if (onnxEmb?.embed) {
-                    // Probe embed to trigger lazy ONNX init and verify it works
-                    const probe = await onnxEmb.embed('test');
-                    if (probe && probe.length > 0 && (Array.isArray(probe) ? probe.some((v) => v !== 0) : true)) {
-                        if (verbose) {
-                            console.log(`Loading ruvector ONNX embedder (all-MiniLM-L6-v2, ${probe.length}d)...`);
-                        }
-                        embeddingModelState = {
-                            loaded: true,
-                            model: (text) => onnxEmb.embed(text),
-                            tokenizer: null,
-                            dimensions: probe.length || 384
-                        };
-                        return {
-                            success: true,
-                            dimensions: probe.length || 384,
-                            modelName: 'ruvector/onnx',
-                            loadTime: Date.now() - startTime
-                        };
-                    }
-                }
-            }
-            catch {
-                // ruvector ONNX init failed, continue to next fallback
-            }
-        }
         // Legacy fallback: Check for agentic-flow core embeddings
         const agenticFlow = await import('agentic-flow').catch(() => null);
         if (agenticFlow && agenticFlow.embeddings) {
@@ -1414,17 +1378,12 @@ export async function generateEmbedding(text) {
     if (state.model && typeof state.model === 'function') {
         try {
             const output = await state.model(text, { pooling: 'mean', normalize: true });
-            // Handle both @xenova/transformers (output.data) and ruvector (plain array) formats
-            const embedding = output?.data
-                ? Array.from(output.data)
-                : Array.isArray(output) ? output : null;
-            if (embedding) {
-                return {
-                    embedding,
-                    dimensions: embedding.length,
-                    model: 'onnx'
-                };
-            }
+            const embedding = Array.from(output.data);
+            return {
+                embedding,
+                dimensions: embedding.length,
+                model: 'onnx'
+            };
         }
         catch {
             // Fall through to fallback

package/v3/@claude-flow/cli/dist/src/ruvector/index.d.ts

@@ -23,8 +23,6 @@ export { FlashAttention, getFlashAttention, resetFlashAttention, computeAttentio
 export { LoRAAdapter, getLoRAAdapter, resetLoRAAdapter, createLoRAAdapter, adaptEmbedding, trainLoRA, getLoRAStats, DEFAULT_RANK, DEFAULT_ALPHA, INPUT_DIM as LORA_INPUT_DIM, OUTPUT_DIM as LORA_OUTPUT_DIM, type LoRAConfig, type LoRAWeights, type AdaptationResult, type LoRAStats, } from './lora-adapter.js';
 export { ModelRouter, getModelRouter, resetModelRouter, createModelRouter, routeToModel, routeToModelFull, analyzeTaskComplexity, getModelRouterStats, recordModelOutcome, MODEL_CAPABILITIES, COMPLEXITY_INDICATORS, type ClaudeModel, type ModelRouterConfig, type ModelRoutingResult, type ComplexityAnalysis, } from './model-router.js';
 export { SemanticRouter, createSemanticRouter, type Intent, type RouteResult, type RouterConfig, } from './semantic-router.js';
-export { isRuvllmWasmAvailable, initRuvllmWasm, getRuvllmStatus, createHnswRouter, createSonaInstant, createMicroLora, formatChat, createKvCache, createGenerateConfig, createBufferPool, createInferenceArena, HNSW_MAX_SAFE_PATTERNS, type HnswRouterConfig, type HnswPattern, type HnswRouteResult, type SonaConfig, type MicroLoraConfig, type ChatMessage, type GenerateOptions, type RuvllmStatus, } from './ruvllm-wasm.js';
-export { isAgentWasmAvailable, initAgentWasm, createWasmAgent, promptWasmAgent, executeWasmTool, getWasmAgent, listWasmAgents, terminateWasmAgent, getWasmAgentState, getWasmAgentTools, getWasmAgentTodos, exportWasmState, createWasmMcpServer, listGalleryTemplates, getGalleryCount, getGalleryCategories, searchGalleryTemplates, getGalleryTemplate, createAgentFromTemplate, buildRvfContainer, buildRvfFromTemplate, type WasmAgentConfig, type WasmAgentInfo, type GalleryTemplate, type GalleryTemplateDetail, type ToolResult, } from './agent-wasm.js';
 /**
  * Check if ruvector packages are available
  */

package/v3/@claude-flow/cli/dist/src/ruvector/index.js

@@ -33,10 +33,6 @@ export { FlashAttention, getFlashAttention, resetFlashAttention, computeAttentio
 export { LoRAAdapter, getLoRAAdapter, resetLoRAAdapter, createLoRAAdapter, adaptEmbedding, trainLoRA, getLoRAStats, DEFAULT_RANK, DEFAULT_ALPHA, INPUT_DIM as LORA_INPUT_DIM, OUTPUT_DIM as LORA_OUTPUT_DIM, } from './lora-adapter.js';
 export { ModelRouter, getModelRouter, resetModelRouter, createModelRouter, routeToModel, routeToModelFull, analyzeTaskComplexity, getModelRouterStats, recordModelOutcome, MODEL_CAPABILITIES, COMPLEXITY_INDICATORS, } from './model-router.js';
 export { SemanticRouter, createSemanticRouter, } from './semantic-router.js';
-// ── RuVector LLM WASM (inference utilities) ─────────────────
-export { isRuvllmWasmAvailable, initRuvllmWasm, getRuvllmStatus, createHnswRouter, createSonaInstant, createMicroLora, formatChat, createKvCache, createGenerateConfig, createBufferPool, createInferenceArena, HNSW_MAX_SAFE_PATTERNS, } from './ruvllm-wasm.js';
-// ── Agent WASM (sandboxed agent runtime) ────────────────────
-export { isAgentWasmAvailable, initAgentWasm, createWasmAgent, promptWasmAgent, executeWasmTool, getWasmAgent, listWasmAgents, terminateWasmAgent, getWasmAgentState, getWasmAgentTools, getWasmAgentTodos, exportWasmState, createWasmMcpServer, listGalleryTemplates, getGalleryCount, getGalleryCategories, searchGalleryTemplates, getGalleryTemplate, createAgentFromTemplate, buildRvfContainer, buildRvfFromTemplate, } from './agent-wasm.js';
 /**
  * Check if ruvector packages are available
  */

package/v3/@claude-flow/cli/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@claude-flow/cli",
-  "version": "3.5.28",
+  "version": "3.5.29",
   "type": "module",
   "description": "Ruflo CLI - Enterprise AI agent orchestration with 60+ specialized agents, swarm coordination, MCP server, self-learning hooks, and vector memory for Claude Code",
   "main": "dist/src/index.js",
@@ -97,14 +97,11 @@
     "@claude-flow/guidance": "^3.0.0-alpha.1",
     "@claude-flow/memory": "^3.0.0-alpha.11",
     "@claude-flow/plugin-gastown-bridge": "^0.1.3",
+    "agentic-flow": "^3.0.0-alpha.1",
     "@ruvector/attention": "^0.1.4",
     "@ruvector/learning-wasm": "^0.1.29",
     "@ruvector/router": "^0.1.27",
-    "@ruvector/rvagent-wasm": "^0.1.0",
-    "@ruvector/ruvllm-wasm": "^2.0.2",
-    "@ruvector/sona": "^0.1.5",
-    "agentic-flow": "^3.0.0-alpha.1",
-    "ruvector": "^0.2.16"
+    "@ruvector/sona": "^0.1.5"
   },
   "publishConfig": {
     "access": "public",