claude-flow 3.32.34 → 3.32.36

package/v3/@claude-flow/cli/dist/src/commands/hooks.js

@@ -1218,8 +1218,20 @@ const metricsCommand = {
             const totalPatterns = safeNum(rawMetrics.patterns?.total ?? rawMetrics.summary?.patternsLearned);
             const successfulPatterns = safeNum(rawMetrics.patterns?.successful ?? Math.round(safeNum(rawMetrics.summary?.successRate) * totalPatterns));
             const failedPatterns = Math.max(0, safeNum(rawMetrics.patterns?.failed ?? totalPatterns - successfulPatterns));
+            const unknownPatterns = Math.max(0, safeNum(rawMetrics.patterns?.unknown));
+            const describedPatterns = Math.max(0, safeNum(rawMetrics.patterns?.described));
+            const descriptionCoverage = safeNum(rawMetrics.patterns?.descriptionCoverage ??
+                (totalPatterns > 0 ? describedPatterns / totalPatterns : 0));
             const avgConfidence = safeNum(rawMetrics.patterns?.avgConfidence ?? rawMetrics.summary?.avgQuality);
-            const routingAccuracy = safeNum(rawMetrics.agents?.routingAccuracy ?? rawMetrics.routing?.avgConfidence);
+            const routingAccuracy = rawMetrics.agents?.routingAccuracy == null
+                ? null
+                : safeNum(rawMetrics.agents.routingAccuracy);
+            const averageRoutingConfidence = safeNum(rawMetrics.agents?.averageConfidence ??
+                rawMetrics.routing?.avgConfidence ??
+                rawMetrics.patterns?.avgConfidence);
+            const routingOutcomeSuccessRate = rawMetrics.agents?.outcomeSuccessRate == null
+                ? null
+                : safeNum(rawMetrics.agents.outcomeSuccessRate);
             const totalRoutes = safeNum(rawMetrics.agents?.totalRoutes ?? rawMetrics.routing?.totalRoutes);
             const topAgent = rawMetrics.agents?.topAgent ?? rawMetrics.routing?.topAgents?.[0]?.agent ?? 'n/a';
             const totalCommands = safeNum(rawMetrics.commands?.totalExecuted ?? rawMetrics.commands?.totalCommands);
@@ -1227,8 +1239,22 @@ const metricsCommand = {
             const avgRiskScore = safeNum(rawMetrics.commands?.avgRiskScore ?? rawMetrics.commands?.avgExecutionTime);
             const result = {
                 ...rawMetrics,
-                patterns: { total: totalPatterns, successful: successfulPatterns, failed: failedPatterns, avgConfidence },
-                agents: { routingAccuracy, totalRoutes, topAgent },
+                patterns: {
+                    total: totalPatterns,
+                    successful: successfulPatterns,
+                    failed: failedPatterns,
+                    unknown: unknownPatterns,
+                    described: describedPatterns,
+                    descriptionCoverage,
+                    avgConfidence,
+                },
+                agents: {
+                    routingAccuracy,
+                    averageConfidence: averageRoutingConfidence,
+                    outcomeSuccessRate: routingOutcomeSuccessRate,
+                    totalRoutes,
+                    topAgent,
+                },
                 commands: { totalExecuted: totalCommands, successRate: commandSuccessRate, avgRiskScore },
             };
             if (ctx.flags.format === 'json') {
@@ -1246,6 +1272,8 @@ const metricsCommand = {
                     { metric: 'Total Patterns', value: totalPatterns },
                     { metric: 'Successful', value: output.success(String(successfulPatterns)) },
                     { metric: 'Failed', value: output.error(String(failedPatterns)) },
+                    ...(unknownPatterns > 0 ? [{ metric: 'Unclassified', value: String(unknownPatterns) }] : []),
+                    { metric: 'With Task Context', value: `${(descriptionCoverage * 100).toFixed(1)}%` },
                     { metric: 'Avg Confidence', value: `${(avgConfidence * 100).toFixed(1)}%` }
                 ]
             });
@@ -1258,7 +1286,14 @@ const metricsCommand = {
                     { key: 'value', header: 'Value', width: 20, align: 'right' }
                 ],
                 data: [
-                    { metric: 'Routing Accuracy', value: `${(routingAccuracy * 100).toFixed(1)}%` },
+                    {
+                        metric: routingAccuracy === null ? 'Avg Confidence' : 'Routing Accuracy',
+                        value: `${((routingAccuracy ?? averageRoutingConfidence) * 100).toFixed(1)}%`,
+                    },
+                    ...(routingOutcomeSuccessRate === null ? [] : [{
+                            metric: 'Outcome Success Rate',
+                            value: `${(routingOutcomeSuccessRate * 100).toFixed(1)}%`,
+                        }]),
                     { metric: 'Total Routes', value: totalRoutes },
                     { metric: 'Top Agent', value: output.highlight(topAgent) }
                 ]
@@ -1672,6 +1707,26 @@ const postTaskCommand = {
             description: 'Agent that executed the task',
             type: 'string'
         },
+        {
+            name: 'agent-role',
+            description: 'Stable agent role used for role-aware pheromone comparison (for example coder, tester, coordinator)',
+            type: 'string'
+        },
+        {
+            name: 'duration',
+            description: 'Observed task duration in milliseconds for latency fitness',
+            type: 'number'
+        },
+        {
+            name: 'latency-budget-ms',
+            description: 'Expected task duration in milliseconds; paired with --duration to normalize latency fitness',
+            type: 'number'
+        },
+        {
+            name: 'consensus-alignment',
+            description: 'Consensus alignment score from 0 to 1',
+            type: 'number'
+        },
         {
             name: 'task',
             short: 't',
@@ -1716,6 +1771,10 @@ const postTaskCommand = {
                 success,
                 quality: ctx.flags.quality,
                 agent: ctx.flags.agent,
+                agentRole: ctx.flags.agentRole,
+                duration: ctx.flags.duration,
+                latencyBudgetMs: ctx.flags.latencyBudgetMs,
+                consensusAlignment: ctx.flags.consensusAlignment,
                 // #2785: forward the task description so routing outcomes actually persist
                 // (hooks_post-task requires taskText + agent to write the outcome row that
                 // hooks_metrics reads via getIntelligenceStatsFromMemory)

package/v3/@claude-flow/cli/dist/src/commands/mcp.js

@@ -63,7 +63,7 @@ const startCommand = {
         },
         {
             name: 'tools',
-            description: 'Tools to enable (comma-separated or "all")',
+            description: 'Tools to advertise (comma-separated categories, prefixes, exact names, or "all")',
             type: 'string',
             default: 'all'
         },

package/v3/@claude-flow/cli/dist/src/commands/memory-distill.js

@@ -182,6 +182,7 @@ const runCommand = {
             data: [
                 { metric: 'Processed', value: String(report.processed) },
                 { metric: 'Episodes', value: String(report.episodes) },
+                { metric: 'Episode Embeddings', value: String(report.episodeEmbeddings) },
                 { metric: 'Patterns', value: String(report.patterns) },
                 { metric: 'Pattern Embeddings', value: String(report.patternEmbeddings) },
                 { metric: 'Causal Edges', value: String(report.causalEdges) },

package/v3/@claude-flow/cli/dist/src/commands/metaharness.js

@@ -102,12 +102,16 @@ async function dispatchFlywheel(operation, positional, flags) {
                 receiptPublicKeyPem: publicKeyPath ? readFileSync(resolve(publicKeyPath), 'utf8') : undefined,
                 maxConcurrency: Number(flywheelFlag(flags, 'maxConcurrency', 2)),
                 evaluationTimeoutMs: Number(flywheelFlag(flags, 'timeoutMs', 120_000)),
+                anchorPath: flywheelFlag(flags, 'anchorPath'),
+                anchorHash: flywheelFlag(flags, 'anchorHash'),
+                anchorManifestPath: flywheelFlag(flags, 'anchorManifest'),
             });
         }
     }
     else if (operation === 'receipts') {
         data = listFlywheelReceipts(projectRoot).map(({ receipt, state }) => ({
             receiptId: receipt.payload.receiptId,
+            anchorRef: receipt.payload.anchorRef,
             candidateId: receipt.payload.candidateId,
             baselineRef: receipt.payload.baselineRef,
             decision: receipt.payload.decision,

package/v3/@claude-flow/cli/dist/src/commands/swarm.js

@@ -50,6 +50,34 @@ function getSwarmStatus(swarmId) {
             // Ignore
         }
     }
+    // The canonical agent registry is the same source used by `agent list`.
+    // Prefer it over the swarm-level coordination boolean so idle agents are
+    // not reported as active (#2808). Hive agents are merged additively.
+    if (totalAgents === 0) {
+        try {
+            const canonicalPath = path.join(process.cwd(), '.claude-flow', 'agents', 'store.json');
+            const hivePath = path.join(process.cwd(), '.claude-flow', 'agents.json');
+            const merged = {};
+            for (const storePath of [hivePath, canonicalPath]) {
+                if (!fs.existsSync(storePath))
+                    continue;
+                const parsed = JSON.parse(fs.readFileSync(storePath, 'utf-8'));
+                if (parsed?.agents && typeof parsed.agents === 'object') {
+                    Object.assign(merged, parsed.agents);
+                }
+            }
+            const agents = Object.values(merged).filter(agent => agent.status !== 'terminated');
+            if (agents.length > 0) {
+                totalAgents = agents.length;
+                activeAgents = agents.filter(agent => agent.status === 'active' ||
+                    agent.status === 'running' ||
+                    agent.status === 'busy').length;
+            }
+        }
+        catch {
+            // Ignore — the count-only activity file remains the final fallback.
+        }
+    }
     // #2799 — `agent spawn` never writes `.swarm/agents/*.json`; it records
     // the count in `.claude-flow/metrics/swarm-activity.json` (via
     // updateSwarmActivityMetrics in commands/agent.ts). So when the agents
@@ -271,7 +299,8 @@ const TOPOLOGIES = [
     { value: 'ring', label: 'Ring', hint: 'Circular communication pattern' },
     { value: 'star', label: 'Star', hint: 'Central coordinator with spoke agents' },
     { value: 'hybrid', label: 'Hybrid', hint: 'Hierarchical mesh for maximum flexibility' },
-    { value: 'hierarchical-mesh', label: 'Hierarchical Mesh', hint: 'V3 15-agent queen + peer communication (recommended)' }
+    { value: 'hierarchical-mesh', label: 'Hierarchical Mesh', hint: 'V3 15-agent queen + peer communication (recommended)' },
+    { value: 'pheromone-adaptive', label: 'Pheromone Adaptive', hint: 'Role-aware dynamic eligibility with quorum safety (ADR-330)' }
 ];
 // Swarm strategies
 const STRATEGIES = [
@@ -324,6 +353,19 @@ const initCommand = {
             type: 'boolean',
             default: false
         },
+        {
+            name: 'apsc-live',
+            description: 'Apply APSC suspension decisions (default is calibration-only dry run)',
+            type: 'boolean',
+            default: false
+        },
+        { name: 'apsc-alpha', description: 'Task-success score weight', type: 'number', default: 0.5 },
+        { name: 'apsc-beta', description: 'Latency score weight', type: 'number', default: 0.2 },
+        { name: 'apsc-gamma', description: 'Consensus-alignment score weight', type: 'number', default: 0.3 },
+        { name: 'apsc-pruning-factor', description: 'Fraction of adaptive threshold below which agents are eligible for suspension', type: 'number', default: 0.6 },
+        { name: 'apsc-reactivation-threshold', description: 'Fraction of adaptive threshold required for recovery', type: 'number', default: 0.75 },
+        { name: 'apsc-min-active-agents', description: 'Hard quorum floor', type: 'number', default: 3 },
+        { name: 'apsc-min-samples', description: 'Warm-up observations before pruning', type: 'number', default: 3 },
         {
             // #2768 — dream-cycle SubagentPermissionDelegate. Ships a per-role
             // capability manifest to `.swarm/permissions.jsonl` + an append-only
@@ -366,6 +408,18 @@ const initCommand = {
                     failureHandling: 'retry',
                     loadBalancing: true,
                     autoScaling: ctx.flags.autoScale ?? true,
+                    ...(topology === 'pheromone-adaptive' ? {
+                        apsc: {
+                            alpha: Number(ctx.flags.apscAlpha ?? 0.5),
+                            beta: Number(ctx.flags.apscBeta ?? 0.2),
+                            gamma: Number(ctx.flags.apscGamma ?? 0.3),
+                            pruningFactor: Number(ctx.flags.apscPruningFactor ?? 0.6),
+                            reactivationThreshold: Number(ctx.flags.apscReactivationThreshold ?? 0.75),
+                            minActiveAgents: Number(ctx.flags.apscMinActiveAgents ?? 3),
+                            minSamples: Number(ctx.flags.apscMinSamples ?? 3),
+                            dryRun: ctx.flags.apscLive !== true,
+                        },
+                    } : {}),
                 },
                 metadata: {
                     v3Mode,
@@ -393,7 +447,10 @@ const initCommand = {
                     { property: 'Max Agents', value: result.config.maxAgents },
                     { property: 'Auto Scale', value: result.config.autoScaling ? 'Enabled' : 'Disabled' },
                     { property: 'Protocol', value: result.config.communicationProtocol || 'N/A' },
-                    { property: 'V3 Mode', value: v3Mode ? 'Enabled' : 'Disabled' }
+                    { property: 'V3 Mode', value: v3Mode ? 'Enabled' : 'Disabled' },
+                    ...(topology === 'pheromone-adaptive'
+                        ? [{ property: 'APSC Mode', value: ctx.flags.apscLive === true ? 'Live' : 'Dry run' }]
+                        : [])
                 ]
             });
             output.writeln();
@@ -924,15 +981,41 @@ const compressMessageCommand = {
         return { success: true, data: result };
     },
 };
+const pheromoneCommand = {
+    name: 'pheromone',
+    description: 'Inspect or update ADR-330 pheromone-adaptive scheduling state',
+    options: [
+        { name: 'agent-id', description: 'Agent identifier; omit to show status', type: 'string' },
+        { name: 'role', description: 'Agent role for role-local normalization', type: 'string' },
+        { name: 'task-success', description: 'Task success in [0,1]', type: 'number' },
+        { name: 'normalized-latency', description: 'Latency divided by budget in [0,1]', type: 'number' },
+        { name: 'consensus-alignment', description: 'Consensus alignment in [0,1]', type: 'number' },
+    ],
+    action: async (ctx) => {
+        const agentId = ctx.flags.agentId;
+        const data = agentId
+            ? await callMCPTool('swarm_pheromone_update', {
+                agentId,
+                role: String(ctx.flags.role ?? 'worker'),
+                taskSuccess: Number(ctx.flags.taskSuccess ?? 1),
+                normalizedLatency: Number(ctx.flags.normalizedLatency ?? 0),
+                consensusAlignment: Number(ctx.flags.consensusAlignment ?? 1),
+            })
+            : await callMCPTool('swarm_pheromone_status', {});
+        output.writeln(JSON.stringify(data, null, 2));
+        return { success: data.active !== false, data };
+    },
+};
 export const swarmCommand = {
     name: 'swarm',
     description: 'Swarm coordination commands',
-    subcommands: [initCommand, startCommand, statusCommand, stopCommand, scaleCommand, coordinateCommand, compressMessageCommand],
+    subcommands: [initCommand, startCommand, statusCommand, stopCommand, scaleCommand, coordinateCommand, compressMessageCommand, pheromoneCommand],
     options: [],
     examples: [
         { command: 'claude-flow swarm init --v3-mode', description: 'Initialize V3 swarm' },
         { command: 'claude-flow swarm start -o "Build API" -s development', description: 'Start development swarm' },
-        { command: 'claude-flow swarm coordinate --agents 15', description: 'V3 coordination' }
+        { command: 'claude-flow swarm coordinate --agents 15', description: 'V3 coordination' },
+        { command: 'claude-flow swarm pheromone', description: 'Inspect pheromone-adaptive scheduling state' }
     ],
     action: async (ctx) => {
         output.writeln();
@@ -947,7 +1030,8 @@ export const swarmCommand = {
             `${output.highlight('status')}      - Show swarm status`,
             `${output.highlight('stop')}        - Stop swarm execution`,
             `${output.highlight('scale')}       - Scale swarm agent count`,
-            `${output.highlight('coordinate')}  - V3 15-agent coordination`
+            `${output.highlight('coordinate')}  - V3 15-agent coordination`,
+            `${output.highlight('pheromone')}   - Inspect/update adaptive pheromone state`
         ]);
         return { success: true };
     }

package/v3/@claude-flow/cli/dist/src/config-adapter.js

@@ -147,6 +147,7 @@ function normalizeTopology(topology) {
         case 'hierarchical-mesh':
             return topology;
         case 'adaptive':
+        case 'pheromone-adaptive':
             return 'hybrid';
         default:
             return 'hierarchical';

package/v3/@claude-flow/cli/dist/src/index.js

@@ -196,8 +196,9 @@ export class CLI {
                     try {
                         const { ensureDaemonRunning } = await import('./services/daemon-autostart.js');
                         const d = ensureDaemonRunning(process.cwd());
-                        if (d.started && this.output.isVerbose())
-                            this.output.printDebug('Started background daemon (auto)');
+                        if (d.started) {
+                            this.output.printInfo(`Started Ruflo background daemon for ${process.cwd()} (stop: ruflo daemon stop)`);
+                        }
                     }
                     catch { /* silent */ }
                 }

package/v3/@claude-flow/cli/dist/src/init/executor.js

@@ -370,18 +370,19 @@ function mergeSettingsForUpgrade(existing) {
     // js/redos): a crafted settings.json command string with dozens of
     // dash-token repetitions can hang this check for minutes.
     const BROKEN_STATUSLINE_RE = /(?:npx\s+(?:--?\S+\s+){0,10})?@?claude-flow(?:\/cli)?(?:@\S+)?\s+hooks\s+statusline/;
+    const BROKEN_NPX_LATEST_RE = /npx\s+(?:--?\S+\s+){0,10}@?claude-flow\/cli@latest\s+\S+/;
     const existingStatusLine = existing.statusLine;
     if (existingStatusLine) {
         const existingCmd = typeof existingStatusLine.command === 'string' ? existingStatusLine.command : '';
-        const isBroken = BROKEN_STATUSLINE_RE.test(existingCmd);
+        const isBroken = BROKEN_STATUSLINE_RE.test(existingCmd) || BROKEN_NPX_LATEST_RE.test(existingCmd);
         merged.statusLine = {
             type: 'command',
             command: isBroken || !existingCmd ? NEW_STATUSLINE_CMD : existingCmd,
             // Remove invalid fields: refreshMs, enabled (not supported by Claude Code)
         };
     }
-    // #2448 — Detect and REGENERATE per-action hook commands that still use
-    // the runaway `npx @claude-flow/cli@latest hooks <sub>` form. These fire
+    // #2448 / #2677 — Detect and REGENERATE per-action hook commands that still
+    // use the runaway `npx @claude-flow/cli@latest hooks <sub>` form. These fire
     // on every PreToolUse/PostToolUse/UserPromptSubmit, each spawning ~130 MB
     // of cold Node + npm registry resolution; the storm is what kernel-paniced
     // the reporter's machine in #2448.
@@ -409,15 +410,20 @@ function mergeSettingsForUpgrade(existing) {
             for (const group of groups) {
                 if (!Array.isArray(group.hooks))
                     continue;
-                for (const h of group.hooks) {
+                group.hooks = group.hooks.filter((h) => {
                     if (typeof h?.command !== 'string')
-                        continue;
+                        return true;
                     const m = BROKEN_HOOK_RE.exec(h.command);
-                    if (!m)
-                        continue;
-                    // Subcommand captured (e.g. "pre-bash", "post-edit", "route") — keep it.
-                    h.command = localHookCmd(m[1]);
-                }
+                    if (m) {
+                        // Subcommand captured (e.g. "pre-bash", "post-edit", "route") — keep it.
+                        h.command = localHookCmd(m[1]);
+                        return true;
+                    }
+                    // Sibling CLI invocations (memory/daemon/swarm/...) have no
+                    // hook-handler equivalent. Drop the stale extra; the merge above
+                    // has already installed current local-helper hooks for this event.
+                    return !BROKEN_NPX_LATEST_RE.test(h.command);
+                });
             }
         }
     }

package/v3/@claude-flow/cli/dist/src/init/helpers-generator.js

@@ -775,11 +775,22 @@ export function generateIntelligenceStub() {
         "const path = require('path');",
         "const os = require('os');",
         '',
-        "const DATA_DIR = path.join(process.cwd(), '.claude-flow', 'data');",
+        'function resolveProjectRoot(startDir) {',
+        '  if (process.env.CLAUDE_PROJECT_DIR) return path.resolve(process.env.CLAUDE_PROJECT_DIR);',
+        '  var dir = path.resolve(startDir || process.cwd());',
+        '  while (true) {',
+        '    if (fs.existsSync(path.join(dir, ".git")) || fs.existsSync(path.join(dir, ".claude-flow"))) return dir;',
+        '    var parent = path.dirname(dir);',
+        '    if (parent === dir) return path.resolve(startDir || process.cwd());',
+        '    dir = parent;',
+        '  }',
+        '}',
+        "const PROJECT_ROOT = resolveProjectRoot(process.cwd());",
+        "const DATA_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'data');",
         "const STORE_PATH = path.join(DATA_DIR, 'auto-memory-store.json');",
         "const RANKED_PATH = path.join(DATA_DIR, 'ranked-context.json');",
         "const PENDING_PATH = path.join(DATA_DIR, 'pending-insights.jsonl');",
-        "const SESSION_DIR = path.join(process.cwd(), '.claude-flow', 'sessions');",
+        "const SESSION_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'sessions');",
         "const SESSION_FILE = path.join(SESSION_DIR, 'current.json');",
         '',
         'function ensureDir(dir) {',
@@ -823,8 +834,8 @@ export function generateIntelligenceStub() {
         '  var entries = [];',
         '  var candidates = [',
         '    path.join(os.homedir(), ".claude", "projects"),',
-        '    path.join(process.cwd(), ".claude-flow", "memory"),',
-        '    path.join(process.cwd(), ".claude", "memory"),',
+        '    path.join(PROJECT_ROOT, ".claude-flow", "memory"),',
+        '    path.join(PROJECT_ROOT, ".claude", "memory"),',
         '  ];',
         '  for (var i = 0; i < candidates.length; i++) {',
         '    try {',

package/v3/@claude-flow/cli/dist/src/init/statusline-generator.js

@@ -53,6 +53,16 @@ function getInstalledCliVersionLocal() {
         return '0.0.0';
     }
 }
+function compareVersionsLocal(a, b) {
+    const pa = a.split(/[.-]/).map(part => Number.parseInt(part, 10) || 0);
+    const pb = b.split(/[.-]/).map(part => Number.parseInt(part, 10) || 0);
+    for (let i = 0; i < Math.max(pa.length, pb.length); i++) {
+        const delta = (pa[i] ?? 0) - (pb[i] ?? 0);
+        if (delta !== 0)
+            return delta;
+    }
+    return 0;
+}
 /**
  * Generate optimized statusline script
  * Output format:
@@ -91,10 +101,12 @@ export function generateStatuslineScript(options) {
     // getInstalledCliVersionLocal() above — reuse the pattern for the
     // same reason it exists there.
     let helperContent = null;
+    let helperPackageRoot = '';
     try {
         const esmRequire = createRequire(import.meta.url);
         const pkgJsonPath = esmRequire.resolve('@claude-flow/cli/package.json');
-        const helperPath = path.join(path.dirname(pkgJsonPath), '.claude', 'helpers', 'statusline.cjs');
+        helperPackageRoot = path.dirname(pkgJsonPath);
+        const helperPath = path.join(helperPackageRoot, '.claude', 'helpers', 'statusline.cjs');
         helperContent = fs.readFileSync(helperPath, 'utf-8');
     }
     catch {
@@ -105,6 +117,7 @@ export function generateStatuslineScript(options) {
                 if (pkg && pkg.name === '@claude-flow/cli') {
                     const candidate = path.join(dir, '.claude', 'helpers', 'statusline.cjs');
                     if (fs.existsSync(candidate)) {
+                        helperPackageRoot = dir;
                         helperContent = fs.readFileSync(candidate, 'utf-8');
                         break;
                     }
@@ -128,15 +141,15 @@ export function generateStatuslineScript(options) {
     // whatever the helper hard-codes) ships. Add a paired test in
     // statusline-cost-display.test.ts before changing either token.
     helperContent = helperContent.replace(/maxAgents: \d+,/, `maxAgents: ${maxAgents},`);
+    helperContent = helperContent.replace(/const BAKED_INSTALL_ROOT = "[^"]*";/, `const BAKED_INSTALL_ROOT = ${JSON.stringify(helperPackageRoot)};`);
     // Only overwrite the helper's baked version if OURS resolves higher.
     // Otherwise the substitution could DOWNGRADE (test environments where
     // esmRequire.resolve happens to hit an older node_modules install would
-    // clobber a fresh committed helper). Naive lexicographic compare — works
-    // for canonical semver strings with same-width digit parts, which is
-    // reliable at this stage of the version space.
+    // clobber a fresh committed helper). Compare numeric components:
+    // lexicographic comparison freezes 3.32.24 below 3.32.8 (#2811).
     const helperVerMatch = helperContent.match(/let ver = "([^"]+)";/);
     const helperVer = helperVerMatch ? helperVerMatch[1] : '';
-    if (!helperVer || bakedVersion > helperVer) {
+    if (!helperVer || compareVersionsLocal(bakedVersion, helperVer) > 0) {
         helperContent = helperContent.replace(/let ver = "[^"]+";/, `let ver = ${JSON.stringify(bakedVersion)};`);
     }
     return helperContent;

package/v3/@claude-flow/cli/dist/src/mcp-server.d.ts

@@ -48,6 +48,31 @@ export interface MCPServerStatus {
         metrics?: Record<string, number>;
     };
 }
+export declare function parseMcpToolSelection(value: string | undefined): string[] | 'all';
+/**
+ * Apply the existing `--tools` contract to advertised schemas. A selector can
+ * be an exact tool name, a category, or a namespace prefix (`memory` matches
+ * `memory_store`). Execution remains registered internally; only the fixed
+ * per-request schema catalogue is reduced.
+ */
+export declare function filterAdvertisedMcpTools<T extends {
+    name: string;
+    category?: string;
+}>(tools: T[], selection: string[] | 'all'): T[];
+export interface McpSchemaOverhead {
+    toolCount: number;
+    bytes: number;
+    estimatedTokens: number;
+    contextWindowTokens?: number;
+    ratio?: number;
+    risk: 'normal' | 'high';
+}
+/** Conservative JSON-size estimate for the fixed tools/list catalogue. */
+export declare function assessMcpSchemaOverhead(tools: Array<{
+    name: string;
+    description?: string;
+    inputSchema?: unknown;
+}>, contextWindowTokens?: number): McpSchemaOverhead;
 /**
  * MCP Server Manager
  *

package/v3/@claude-flow/cli/dist/src/mcp-server.js

@@ -42,6 +42,54 @@ const DEFAULT_OPTIONS = {
     daemonize: false,
     timeout: 30000,
 };
+export function parseMcpToolSelection(value) {
+    if (!value || value.trim().toLowerCase() === 'all')
+        return 'all';
+    const selectors = value.split(',').map((item) => item.trim()).filter(Boolean);
+    return selectors.length > 0 ? selectors : 'all';
+}
+/**
+ * Apply the existing `--tools` contract to advertised schemas. A selector can
+ * be an exact tool name, a category, or a namespace prefix (`memory` matches
+ * `memory_store`). Execution remains registered internally; only the fixed
+ * per-request schema catalogue is reduced.
+ */
+export function filterAdvertisedMcpTools(tools, selection) {
+    if (selection === 'all')
+        return tools;
+    const selectors = new Set(selection.map((item) => item.toLowerCase()));
+    return tools.filter((tool) => {
+        const name = tool.name.toLowerCase();
+        const category = tool.category?.toLowerCase();
+        return selectors.has(name)
+            || (category !== undefined && selectors.has(category))
+            || Array.from(selectors).some((selector) => name.startsWith(`${selector}_`));
+    });
+}
+/** Conservative JSON-size estimate for the fixed tools/list catalogue. */
+export function assessMcpSchemaOverhead(tools, contextWindowTokens) {
+    const catalogue = tools.map((tool) => ({
+        name: tool.name,
+        description: tool.description,
+        inputSchema: tool.inputSchema,
+    }));
+    const bytes = Buffer.byteLength(JSON.stringify(catalogue), 'utf8');
+    const estimatedTokens = Math.ceil(bytes / 4);
+    const validWindow = Number.isFinite(contextWindowTokens) && Number(contextWindowTokens) > 0
+        ? Number(contextWindowTokens)
+        : undefined;
+    const ratio = validWindow ? estimatedTokens / validWindow : undefined;
+    return {
+        toolCount: tools.length,
+        bytes,
+        estimatedTokens,
+        ...(validWindow === undefined ? {} : { contextWindowTokens: validWindow }),
+        ...(ratio === undefined ? {} : { ratio }),
+        risk: (ratio !== undefined ? ratio >= 0.2 : estimatedTokens >= 8_000)
+            ? 'high'
+            : 'normal',
+    };
+}
 /**
  * MCP Server Manager
  *
@@ -55,7 +103,14 @@ export class MCPServerManager extends EventEmitter {
     healthCheckInterval;
     constructor(options = {}) {
         super();
-        this.options = { ...DEFAULT_OPTIONS, ...options };
+        // `options.tools`, populated by the `mcp start --tools` CLI flag, is
+        // spread last below and therefore takes precedence over this env fallback.
+        const environmentTools = parseMcpToolSelection(process.env.CLAUDE_FLOW_MCP_TOOLS);
+        this.options = {
+            ...DEFAULT_OPTIONS,
+            ...(environmentTools === 'all' ? {} : { tools: environmentTools }),
+            ...options,
+        };
     }
     /**
      * Start the MCP server
@@ -420,7 +475,7 @@ export class MCPServerManager extends EventEmitter {
                         },
                     };
                 case 'tools/list':
-                    const tools = listMCPTools();
+                    const tools = filterAdvertisedMcpTools(listMCPTools(), this.options.tools);
                     return {
                         jsonrpc: '2.0',
                         id: message.id,

package/v3/@claude-flow/cli/dist/src/mcp-tools/agent-tools.js

@@ -9,6 +9,7 @@ import { join } from 'node:path';
 import { getProjectCwd } from './types.js';
 import { validateIdentifier, validateText, validateAgentSpawn } from './validate-input.js';
 import { executeAgentTask } from './agent-execute-core.js';
+import { pheromoneAgentEligibility } from './swarm-tools.js';
 // Storage paths
 const STORAGE_DIR = '.claude-flow';
 const AGENT_DIR = 'agents';
@@ -383,6 +384,15 @@ export const agentTools = [
             const vP = validateText(input.prompt, 'prompt');
             if (!vP.valid)
                 return { success: false, error: `Input validation failed: ${vP.error}` };
+            const pheromone = pheromoneAgentEligibility(input.agentId);
+            if (!pheromone.eligible) {
+                return {
+                    success: false,
+                    agentId: input.agentId,
+                    suspended: true,
+                    error: pheromone.reason,
+                };
+            }
             // Delegate to the shared core (also used by the workflow runtime).
             return executeAgentTask({
                 agentId: input.agentId,