claude-flow 3.0.0-alpha.4 → 3.0.0-alpha.41

package/v3/@claude-flow/cli/dist/src/init/claudemd-generator.js

@@ -0,0 +1,628 @@
+/**
+ * CLAUDE.md Generator
+ * Generates project-specific Claude Code configuration with V3 swarm guidance
+ */
+/**
+ * Generate CLAUDE.md content based on init options
+ */
+export function generateClaudeMd(options) {
+    const topology = options.runtime.topology;
+    const maxAgents = options.runtime.maxAgents;
+    const memoryBackend = options.runtime.memoryBackend;
+    return `# Claude Code Configuration - Claude Flow V3
+
+## 🚨 AUTOMATIC SWARM ORCHESTRATION
+
+**When starting work on complex tasks, Claude Code MUST automatically:**
+
+1. **Initialize the swarm** using CLI tools via Bash
+2. **Spawn concurrent agents** using Claude Code's Task tool
+3. **Coordinate via hooks** and memory
+
+### 🚨 CRITICAL: CLI + Task Tool in SAME Message
+
+**When user says "spawn swarm" or requests complex work, Claude Code MUST in ONE message:**
+1. Call CLI tools via Bash to initialize coordination
+2. **IMMEDIATELY** call Task tool to spawn REAL working agents
+3. Both CLI and Task calls must be in the SAME response
+
+**CLI coordinates, Task tool agents do the actual work!**
+
+### 🔄 Auto-Start Swarm Protocol (Background Execution)
+
+When the user requests a complex task, **spawn agents in background and WAIT for completion:**
+
+\`\`\`javascript
+// STEP 1: Initialize swarm coordination
+Bash("npx @claude-flow/cli@latest swarm init --topology ${topology} --max-agents ${maxAgents}")
+
+// STEP 2: Spawn ALL agents IN BACKGROUND in a SINGLE message
+// Use run_in_background: true so agents work concurrently
+Task({
+  prompt: "Research requirements, analyze codebase patterns, store findings in memory",
+  subagent_type: "researcher",
+  description: "Research phase",
+  run_in_background: true  // ← CRITICAL: Run in background
+})
+Task({
+  prompt: "Design architecture based on research. Document decisions.",
+  subagent_type: "system-architect",
+  description: "Architecture phase",
+  run_in_background: true
+})
+Task({
+  prompt: "Implement the solution following the design. Write clean code.",
+  subagent_type: "coder",
+  description: "Implementation phase",
+  run_in_background: true
+})
+Task({
+  prompt: "Write comprehensive tests for the implementation.",
+  subagent_type: "tester",
+  description: "Testing phase",
+  run_in_background: true
+})
+Task({
+  prompt: "Review code quality, security, and best practices.",
+  subagent_type: "reviewer",
+  description: "Review phase",
+  run_in_background: true
+})
+
+// STEP 3: WAIT - Tell user agents are working, then STOP
+// Say: "I've spawned 5 agents to work on this in parallel. They'll report back when done."
+// DO NOT check status repeatedly. Just wait for user or agent responses.
+\`\`\`
+
+### ⏸️ CRITICAL: Spawn and Wait Pattern
+
+**After spawning background agents:**
+
+1. **TELL USER** - "I've spawned X agents working in parallel on: [list tasks]"
+2. **STOP** - Do not continue with more tool calls
+3. **WAIT** - Let the background agents complete their work
+4. **RESPOND** - When agents return results, review and synthesize
+
+**Example response after spawning:**
+\`\`\`
+I've launched 5 concurrent agents to work on this:
+- 🔍 Researcher: Analyzing requirements and codebase
+- 🏗️ Architect: Designing the implementation approach
+- 💻 Coder: Implementing the solution
+- 🧪 Tester: Writing tests
+- 👀 Reviewer: Code review and security check
+
+They're working in parallel. I'll synthesize their results when they complete.
+\`\`\`
+
+### 🚫 DO NOT:
+- Continuously check swarm status
+- Poll TaskOutput repeatedly
+- Add more tool calls after spawning
+- Ask "should I check on the agents?"
+
+### ✅ DO:
+- Spawn all agents in ONE message
+- Tell user what's happening
+- Wait for agent results to arrive
+- Synthesize results when they return
+
+## 🧠 AUTO-LEARNING PROTOCOL
+
+### Before Starting Any Task
+\`\`\`bash
+# 1. Search memory for relevant patterns from past successes
+Bash("npx @claude-flow/cli@latest memory search -q '[task keywords]' --namespace patterns")
+
+# 2. Check if similar task was done before
+Bash("npx @claude-flow/cli@latest memory search -q '[task type]' --namespace tasks")
+
+# 3. Load learned optimizations
+Bash("npx @claude-flow/cli@latest hooks route --task '[task description]'")
+\`\`\`
+
+### After Completing Any Task Successfully
+\`\`\`bash
+# 1. Store successful pattern for future reference
+Bash("npx @claude-flow/cli@latest memory store --namespace patterns --key '[pattern-name]' --value '[what worked]'")
+
+# 2. Train neural patterns on the successful approach
+Bash("npx @claude-flow/cli@latest hooks post-edit --file '[main-file]' --train-neural true")
+
+# 3. Record task completion with metrics
+Bash("npx @claude-flow/cli@latest hooks post-task --task-id '[id]' --success true --store-results true")
+
+# 4. Trigger optimization worker if performance-related
+Bash("npx @claude-flow/cli@latest hooks worker dispatch --trigger optimize")
+\`\`\`
+
+### Continuous Improvement Triggers
+
+| Trigger | Worker | When to Use |
+|---------|--------|-------------|
+| After major refactor | \`optimize\` | Performance optimization |
+| After adding features | \`testgaps\` | Find missing test coverage |
+| After security changes | \`audit\` | Security analysis |
+| After API changes | \`document\` | Update documentation |
+| Every 5+ file changes | \`map\` | Update codebase map |
+| Complex debugging | \`deepdive\` | Deep code analysis |
+
+### Memory-Enhanced Development
+
+**ALWAYS check memory before:**
+- Starting a new feature (search for similar implementations)
+- Debugging an issue (search for past solutions)
+- Refactoring code (search for learned patterns)
+- Performance work (search for optimization strategies)
+
+**ALWAYS store in memory after:**
+- Solving a tricky bug (store the solution pattern)
+- Completing a feature (store the approach)
+- Finding a performance fix (store the optimization)
+- Discovering a security issue (store the vulnerability pattern)
+
+### 📋 Agent Routing by Task Type
+
+| Task Type | Required Agents | Topology |
+|-----------|-----------------|----------|
+| Bug Fix | researcher, coder, tester | mesh |
+| New Feature | coordinator, architect, coder, tester, reviewer | hierarchical |
+| Refactoring | architect, coder, reviewer | mesh |
+| Performance | researcher, performance-engineer, coder | hierarchical |
+| Security Audit | security-architect, security-auditor, reviewer | hierarchical |
+| Memory Optimization | memory-specialist, performance-engineer | mesh |
+| Documentation | researcher, api-docs | mesh |
+
+### 🎯 Task Complexity Detection
+
+**AUTO-INVOKE SWARM when task involves:**
+- Multiple files (3+)
+- New feature implementation
+- Refactoring across modules
+- API changes with tests
+- Security-related changes
+- Performance optimization
+- Database schema changes
+
+**SKIP SWARM for:**
+- Single file edits
+- Simple bug fixes (1-2 lines)
+- Documentation updates
+- Configuration changes
+- Quick questions/exploration
+
+## 🚨 CRITICAL: CONCURRENT EXECUTION & FILE MANAGEMENT
+
+**ABSOLUTE RULES**:
+1. ALL operations MUST be concurrent/parallel in a single message
+2. **NEVER save working files, text/mds and tests to the root folder**
+3. ALWAYS organize files in appropriate subdirectories
+4. **USE CLAUDE CODE'S TASK TOOL** for spawning agents concurrently, not just MCP
+
+### ⚡ GOLDEN RULE: "1 MESSAGE = ALL RELATED OPERATIONS"
+
+**MANDATORY PATTERNS:**
+- **TodoWrite**: ALWAYS batch ALL todos in ONE call (5-10+ todos minimum)
+- **Task tool (Claude Code)**: ALWAYS spawn ALL agents in ONE message with full instructions
+- **File operations**: ALWAYS batch ALL reads/writes/edits in ONE message
+- **Bash commands**: ALWAYS batch ALL terminal operations in ONE message
+- **Memory operations**: ALWAYS batch ALL memory store/retrieve in ONE message
+
+### 📁 File Organization Rules
+
+**NEVER save to root folder. Use these directories:**
+- \`/src\` - Source code files
+- \`/tests\` - Test files
+- \`/docs\` - Documentation and markdown files
+- \`/config\` - Configuration files
+- \`/scripts\` - Utility scripts
+- \`/examples\` - Example code
+
+## Project Configuration
+
+This project is configured with Claude Flow V3:
+- **Topology**: ${topology}
+- **Max Agents**: ${maxAgents}
+- **Memory Backend**: ${memoryBackend}
+- **HNSW Indexing**: ${options.runtime.enableHNSW ? 'Enabled (150x-12,500x faster)' : 'Disabled'}
+- **Neural Learning**: ${options.runtime.enableNeural ? 'Enabled (SONA)' : 'Disabled'}
+
+## 🚀 V3 CLI Commands (26 Commands, 140+ Subcommands)
+
+### Core Commands
+
+| Command | Subcommands | Description |
+|---------|-------------|-------------|
+| \`init\` | 4 | Project initialization with wizard, presets, skills, hooks |
+| \`agent\` | 8 | Agent lifecycle (spawn, list, status, stop, metrics, pool, health, logs) |
+| \`swarm\` | 6 | Multi-agent swarm coordination and orchestration |
+| \`memory\` | 11 | AgentDB memory with vector search (150x-12,500x faster) |
+| \`mcp\` | 9 | MCP server management and tool execution |
+| \`task\` | 6 | Task creation, assignment, and lifecycle |
+| \`session\` | 7 | Session state management and persistence |
+| \`config\` | 7 | Configuration management and provider setup |
+| \`status\` | 3 | System status monitoring with watch mode |
+| \`workflow\` | 6 | Workflow execution and template management |
+| \`hooks\` | 17 | Self-learning hooks + 12 background workers |
+| \`hive-mind\` | 6 | Queen-led Byzantine fault-tolerant consensus |
+
+### Advanced Commands
+
+| Command | Subcommands | Description |
+|---------|-------------|-------------|
+| \`daemon\` | 5 | Background worker daemon (start, stop, status, trigger, enable) |
+| \`neural\` | 5 | Neural pattern training (train, status, patterns, predict, optimize) |
+| \`security\` | 6 | Security scanning (scan, audit, cve, threats, validate, report) |
+| \`performance\` | 5 | Performance profiling (benchmark, profile, metrics, optimize, report) |
+| \`providers\` | 5 | AI providers (list, add, remove, test, configure) |
+| \`plugins\` | 5 | Plugin management (list, install, uninstall, enable, disable) |
+| \`deployment\` | 5 | Deployment management (deploy, rollback, status, environments, release) |
+| \`embeddings\` | 4 | Vector embeddings (embed, batch, search, init) - 75x faster with agentic-flow |
+| \`claims\` | 4 | Claims-based authorization (check, grant, revoke, list) |
+| \`migrate\` | 5 | V2 to V3 migration with rollback support |
+| \`doctor\` | 1 | System diagnostics with health checks |
+| \`completions\` | 4 | Shell completions (bash, zsh, fish, powershell) |
+
+### Quick CLI Examples
+
+\`\`\`bash
+# Initialize project
+npx @claude-flow/cli@latest init --wizard
+
+# Start daemon with background workers
+npx @claude-flow/cli@latest daemon start
+
+# Spawn an agent
+npx @claude-flow/cli@latest agent spawn -t coder --name my-coder
+
+# Initialize swarm
+npx @claude-flow/cli@latest swarm init --v3-mode
+
+# Search memory (HNSW-indexed)
+npx @claude-flow/cli@latest memory search -q "authentication patterns"
+
+# System diagnostics
+npx @claude-flow/cli@latest doctor --fix
+
+# Security scan
+npx @claude-flow/cli@latest security scan --depth full
+
+# Performance benchmark
+npx @claude-flow/cli@latest performance benchmark --suite all
+\`\`\`
+
+## 🚀 Available Agents (60+ Types)
+
+### Core Development
+\`coder\`, \`reviewer\`, \`tester\`, \`planner\`, \`researcher\`
+
+### V3 Specialized Agents
+\`security-architect\`, \`security-auditor\`, \`memory-specialist\`, \`performance-engineer\`
+
+### Swarm Coordination
+\`hierarchical-coordinator\`, \`mesh-coordinator\`, \`adaptive-coordinator\`, \`collective-intelligence-coordinator\`, \`swarm-memory-manager\`
+
+### Consensus & Distributed
+\`byzantine-coordinator\`, \`raft-manager\`, \`gossip-coordinator\`, \`consensus-builder\`, \`crdt-synchronizer\`, \`quorum-manager\`, \`security-manager\`
+
+### Performance & Optimization
+\`perf-analyzer\`, \`performance-benchmarker\`, \`task-orchestrator\`, \`memory-coordinator\`, \`smart-agent\`
+
+### GitHub & Repository
+\`github-modes\`, \`pr-manager\`, \`code-review-swarm\`, \`issue-tracker\`, \`release-manager\`, \`workflow-automation\`, \`project-board-sync\`, \`repo-architect\`, \`multi-repo-swarm\`
+
+### SPARC Methodology
+\`sparc-coord\`, \`sparc-coder\`, \`specification\`, \`pseudocode\`, \`architecture\`, \`refinement\`
+
+### Specialized Development
+\`backend-dev\`, \`mobile-dev\`, \`ml-developer\`, \`cicd-engineer\`, \`api-docs\`, \`system-architect\`, \`code-analyzer\`, \`base-template-generator\`
+
+### Testing & Validation
+\`tdd-london-swarm\`, \`production-validator\`
+
+## 🪝 V3 Hooks System (17 Hooks + 12 Workers)
+
+### Hook Categories
+
+| Category | Hooks | Purpose |
+|----------|-------|---------|
+| **Core** | \`pre-edit\`, \`post-edit\`, \`pre-command\`, \`post-command\`, \`pre-task\`, \`post-task\` | Tool lifecycle |
+| **Session** | \`session-start\`, \`session-end\`, \`session-restore\`, \`notify\` | Context management |
+| **Intelligence** | \`route\`, \`explain\`, \`pretrain\`, \`build-agents\`, \`transfer\` | Neural learning |
+| **Learning** | \`intelligence\` (trajectory-start/step/end, pattern-store/search, stats, attention) | Reinforcement |
+
+### 12 Background Workers
+
+| Worker | Priority | Description |
+|--------|----------|-------------|
+| \`ultralearn\` | normal | Deep knowledge acquisition |
+| \`optimize\` | high | Performance optimization |
+| \`consolidate\` | low | Memory consolidation |
+| \`predict\` | normal | Predictive preloading |
+| \`audit\` | critical | Security analysis |
+| \`map\` | normal | Codebase mapping |
+| \`preload\` | low | Resource preloading |
+| \`deepdive\` | normal | Deep code analysis |
+| \`document\` | normal | Auto-documentation |
+| \`refactor\` | normal | Refactoring suggestions |
+| \`benchmark\` | normal | Performance benchmarking |
+| \`testgaps\` | normal | Test coverage analysis |
+
+### Essential Hook Commands
+
+\`\`\`bash
+# Core hooks
+npx @claude-flow/cli@latest hooks pre-task --description "[task]"
+npx @claude-flow/cli@latest hooks post-task --task-id "[id]" --success true
+npx @claude-flow/cli@latest hooks post-edit --file "[file]" --train-patterns
+
+# Session management
+npx @claude-flow/cli@latest hooks session-start --session-id "[id]"
+npx @claude-flow/cli@latest hooks session-end --export-metrics true
+npx @claude-flow/cli@latest hooks session-restore --session-id "[id]"
+
+# Intelligence routing
+npx @claude-flow/cli@latest hooks route --task "[task]"
+npx @claude-flow/cli@latest hooks explain --topic "[topic]"
+
+# Neural learning
+npx @claude-flow/cli@latest hooks pretrain --model-type moe --epochs 10
+npx @claude-flow/cli@latest hooks build-agents --agent-types coder,tester
+
+# Background workers
+npx @claude-flow/cli@latest hooks worker list
+npx @claude-flow/cli@latest hooks worker dispatch --trigger audit
+npx @claude-flow/cli@latest hooks worker status
+\`\`\`
+
+## 🧠 Intelligence System (RuVector)
+
+V3 includes the RuVector Intelligence System:
+- **SONA**: Self-Optimizing Neural Architecture (<0.05ms adaptation)
+- **MoE**: Mixture of Experts for specialized routing
+- **HNSW**: 150x-12,500x faster pattern search
+- **EWC++**: Elastic Weight Consolidation (prevents forgetting)
+- **Flash Attention**: 2.49x-7.47x speedup
+
+The 4-step intelligence pipeline:
+1. **RETRIEVE** - Fetch relevant patterns via HNSW
+2. **JUDGE** - Evaluate with verdicts (success/failure)
+3. **DISTILL** - Extract key learnings via LoRA
+4. **CONSOLIDATE** - Prevent catastrophic forgetting via EWC++
+
+## 📦 Embeddings Package (v3.0.0-alpha.12)
+
+Features:
+- **sql.js**: Cross-platform SQLite persistent cache (WASM, no native compilation)
+- **Document chunking**: Configurable overlap and size
+- **Normalization**: L2, L1, min-max, z-score
+- **Hyperbolic embeddings**: Poincaré ball model for hierarchical data
+- **75x faster**: With agentic-flow ONNX integration
+- **Neural substrate**: Integration with RuVector
+
+## 🐝 Hive-Mind Consensus
+
+### Topologies
+- \`hierarchical\` - Queen controls workers directly
+- \`mesh\` - Fully connected peer network
+- \`hierarchical-mesh\` - Hybrid (recommended)
+- \`adaptive\` - Dynamic based on load
+
+### Consensus Strategies
+- \`byzantine\` - BFT (tolerates f < n/3 faulty)
+- \`raft\` - Leader-based (tolerates f < n/2)
+- \`gossip\` - Epidemic for eventual consistency
+- \`crdt\` - Conflict-free replicated data types
+- \`quorum\` - Configurable quorum-based
+
+## V3 Performance Targets
+
+| Metric | Target |
+|--------|--------|
+| Flash Attention | 2.49x-7.47x speedup |
+| HNSW Search | 150x-12,500x faster |
+| Memory Reduction | 50-75% with quantization |
+| MCP Response | <100ms |
+| CLI Startup | <500ms |
+| SONA Adaptation | <0.05ms |
+
+## 📊 Performance Optimization Protocol
+
+### Automatic Performance Tracking
+\`\`\`bash
+# After any significant operation, track metrics
+Bash("npx @claude-flow/cli@latest hooks post-command --command '[operation]' --track-metrics true")
+
+# Periodically run benchmarks (every major feature)
+Bash("npx @claude-flow/cli@latest performance benchmark --suite all")
+
+# Analyze bottlenecks when performance degrades
+Bash("npx @claude-flow/cli@latest performance profile --target '[component]'")
+\`\`\`
+
+### Session Persistence (Cross-Conversation Learning)
+\`\`\`bash
+# At session start - restore previous context
+Bash("npx @claude-flow/cli@latest session restore --latest")
+
+# At session end - persist learned patterns
+Bash("npx @claude-flow/cli@latest hooks session-end --generate-summary true --persist-state true --export-metrics true")
+\`\`\`
+
+### Neural Pattern Training
+\`\`\`bash
+# Train on successful code patterns
+Bash("npx @claude-flow/cli@latest neural train --pattern-type coordination --epochs 10")
+
+# Predict optimal approach for new tasks
+Bash("npx @claude-flow/cli@latest neural predict --input '[task description]'")
+
+# View learned patterns
+Bash("npx @claude-flow/cli@latest neural patterns --list")
+\`\`\`
+
+## 🔧 Environment Variables
+
+\`\`\`bash
+# Configuration
+CLAUDE_FLOW_CONFIG=./claude-flow.config.json
+CLAUDE_FLOW_LOG_LEVEL=info
+
+# Provider API Keys
+ANTHROPIC_API_KEY=sk-ant-...
+OPENAI_API_KEY=sk-...
+GOOGLE_API_KEY=...
+
+# MCP Server
+CLAUDE_FLOW_MCP_PORT=3000
+CLAUDE_FLOW_MCP_HOST=localhost
+CLAUDE_FLOW_MCP_TRANSPORT=stdio
+
+# Memory
+CLAUDE_FLOW_MEMORY_BACKEND=hybrid
+CLAUDE_FLOW_MEMORY_PATH=./data/memory
+\`\`\`
+
+## 🔍 Doctor Health Checks
+
+Run \`npx @claude-flow/cli@latest doctor\` to check:
+- Node.js version (20+)
+- npm version (9+)
+- Git installation
+- Config file validity
+- Daemon status
+- Memory database
+- API keys
+- MCP servers
+- Disk space
+- TypeScript installation
+
+## 🚀 Quick Setup
+
+\`\`\`bash
+# Add MCP servers (auto-detects MCP mode when stdin is piped)
+claude mcp add claude-flow -- npx -y @claude-flow/cli@latest
+claude mcp add ruv-swarm -- npx -y ruv-swarm mcp start  # Optional
+claude mcp add flow-nexus -- npx -y flow-nexus@latest mcp start  # Optional
+
+# Start daemon
+npx @claude-flow/cli@latest daemon start
+
+# Run doctor
+npx @claude-flow/cli@latest doctor --fix
+\`\`\`
+
+## 🎯 Claude Code vs CLI Tools
+
+### Claude Code Handles ALL EXECUTION:
+- **Task tool**: Spawn and run agents concurrently
+- File operations (Read, Write, Edit, MultiEdit, Glob, Grep)
+- Code generation and programming
+- Bash commands and system operations
+- TodoWrite and task management
+- Git operations
+
+### CLI Tools Handle Coordination (via Bash):
+- **Swarm init**: \`npx @claude-flow/cli@latest swarm init --topology <type>\`
+- **Swarm status**: \`npx @claude-flow/cli@latest swarm status\`
+- **Agent spawn**: \`npx @claude-flow/cli@latest agent spawn -t <type> --name <name>\`
+- **Memory store**: \`npx @claude-flow/cli@latest memory store --namespace <ns> --key <k> --value <v>\`
+- **Memory search**: \`npx @claude-flow/cli@latest memory search -q "<query>"\`
+- **Hooks**: \`npx @claude-flow/cli@latest hooks <hook-name> [options]\`
+
+**KEY**: CLI coordinates the strategy via Bash, Claude Code's Task tool executes with real agents.
+
+## Support
+
+- Documentation: https://github.com/ruvnet/claude-flow
+- Issues: https://github.com/ruvnet/claude-flow/issues
+
+---
+
+Remember: **Claude Flow CLI coordinates, Claude Code Task tool creates!**
+
+# important-instruction-reminders
+Do what has been asked; nothing more, nothing less.
+NEVER create files unless they're absolutely necessary for achieving your goal.
+ALWAYS prefer editing an existing file to creating a new one.
+NEVER proactively create documentation files (*.md) or README files. Only create documentation files if explicitly requested by the User.
+Never save working files, text/mds and tests to the root folder.
+
+## 🚨 SWARM EXECUTION RULES (CRITICAL)
+1. **SPAWN IN BACKGROUND**: Use \`run_in_background: true\` for all agent Task calls
+2. **SPAWN ALL AT ONCE**: Put ALL agent Task calls in ONE message for parallel execution
+3. **TELL USER**: After spawning, list what each agent is doing (use emojis for clarity)
+4. **STOP AND WAIT**: After spawning, STOP - do NOT add more tool calls or check status
+5. **NO POLLING**: Never poll TaskOutput or check swarm status - trust agents to return
+6. **SYNTHESIZE**: When agent results arrive, review ALL results before proceeding
+7. **NO CONFIRMATION**: Don't ask "should I check?" - just wait for results
+
+Example spawn message:
+\`\`\`
+"I've launched 4 agents in background:
+- 🔍 Researcher: [task]
+- 💻 Coder: [task]
+- 🧪 Tester: [task]
+- 👀 Reviewer: [task]
+Working in parallel - I'll synthesize when they complete."
+\`\`\`
+`;
+}
+/**
+ * Generate minimal CLAUDE.md content
+ */
+export function generateMinimalClaudeMd(options) {
+    return `# Claude Code Configuration - Claude Flow V3
+
+## Quick Reference
+
+- **Topology**: ${options.runtime.topology}
+- **Max Agents**: ${options.runtime.maxAgents}
+- **Memory**: ${options.runtime.memoryBackend}
+- **HNSW**: ${options.runtime.enableHNSW ? 'Enabled' : 'Disabled'}
+- **Neural**: ${options.runtime.enableNeural ? 'Enabled' : 'Disabled'}
+
+## Key Rules
+
+1. **Batch Operations**: All related operations in ONE message
+2. **Task Tool**: Use Claude Code's Task tool for agent execution
+3. **CLI Tools**: Use via Bash for coordination (swarm, memory, hooks)
+4. **File Organization**: Never save to root folder
+
+## Agent Execution Pattern
+
+\`\`\`javascript
+// Single message with parallel agents
+Task("Researcher", "Analyze requirements...", "researcher")
+Task("Coder", "Implement features...", "coder")
+Task("Tester", "Write tests...", "tester")
+\`\`\`
+
+## 26 CLI Commands
+
+\`\`\`bash
+# Core
+npx @claude-flow/cli@latest init --wizard
+npx @claude-flow/cli@latest agent spawn -t coder
+npx @claude-flow/cli@latest swarm init --v3-mode
+npx @claude-flow/cli@latest memory search -q "query"
+
+# Advanced
+npx @claude-flow/cli@latest daemon start
+npx @claude-flow/cli@latest doctor --fix
+npx @claude-flow/cli@latest security scan
+npx @claude-flow/cli@latest performance benchmark
+\`\`\`
+
+## MCP Setup
+
+\`\`\`bash
+claude mcp add claude-flow -- npx -y @claude-flow/cli@latest
+\`\`\`
+
+---
+Remember: **Claude Flow CLI coordinates, Claude Code Task tool creates!**
+`;
+}
+export default generateClaudeMd;
+//# sourceMappingURL=claudemd-generator.js.map

package/v3/@claude-flow/cli/dist/src/init/claudemd-generator.js.map

@@ -0,0 +1 @@
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package/v3/@claude-flow/cli/dist/src/init/executor.d.ts

@@ -0,0 +1,11 @@
+/**
+ * Init Executor
+ * Main execution logic for V3 initialization
+ */
+import type { InitOptions, InitResult } from './types.js';
+/**
+ * Execute initialization
+ */
+export declare function executeInit(options: InitOptions): Promise<InitResult>;
+export default executeInit;
+//# sourceMappingURL=executor.d.ts.map

package/v3/@claude-flow/cli/dist/src/init/executor.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"executor.d.ts","sourceRoot":"","sources":["../../../src/init/executor.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAUH,OAAO,KAAK,EAAE,WAAW,EAAE,UAAU,EAAgB,MAAM,YAAY,CAAC;AAgIxE;;GAEG;AACH,wBAAsB,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,CAAC,CAiF3E;AAspBD,eAAe,WAAW,CAAC"}