claude-flow 2.0.0-alpha.70 → 2.0.0-alpha.72

package/dist/cli/simple-commands/init/index.js

@@ -1,1127 +0,0 @@
-// init/index.js - Initialize Claude Code integration files
-import { printSuccess, printError, printWarning } from '../../utils.js';
-import { Deno, cwd, exit, existsSync } from '../../node-compat.js';
-import process from 'process';
-import { createLocalExecutable } from './executable-wrapper.js';
-import { createSparcStructureManually } from './sparc-structure.js';
-import { createClaudeSlashCommands } from './claude-commands/slash-commands.js';
-import { createOptimizedClaudeSlashCommands } from './claude-commands/optimized-slash-commands.js';
-import { execSync } from 'child_process';
-import { promises as fs } from 'fs';
-import { copyTemplates } from './template-copier.js';
-import { copyRevisedTemplates, validateTemplatesExist } from './copy-revised-templates.js';
-import { showInitHelp } from './help.js';
-import { batchInitCommand, batchInitFromConfig, validateBatchOptions } from './batch-init.js';
-import { ValidationSystem, runFullValidation } from './validation/index.js';
-import { RollbackSystem, createAtomicOperation } from './rollback/index.js';
-import { createEnhancedClaudeMd, createEnhancedSettingsJson, createWrapperScript, createCommandDoc, createHelperScript, COMMAND_STRUCTURE, } from './templates/enhanced-templates.js';
-import { getIsolatedNpxEnv } from '../../../utils/npx-isolated-cache.js';
-import { updateGitignore, needsGitignoreUpdate } from './gitignore-updater.js';
-import { createFullClaudeMd, createSparcClaudeMd, createMinimalClaudeMd, } from './templates/claude-md.js';
-import { createFullMemoryBankMd, createMinimalMemoryBankMd, } from './templates/memory-bank-md.js';
-import { createFullCoordinationMd, createMinimalCoordinationMd, } from './templates/coordination-md.js';
-import { createAgentsReadme, createSessionsReadme } from './templates/readme-files.js';
-/**
- * Check if Claude Code CLI is installed
- */
-function isClaudeCodeInstalled() {
-    try {
-        execSync('which claude', { stdio: 'ignore' });
-        return true;
-    }
-    catch {
-        return false;
-    }
-}
-/**
- * Set up MCP servers in Claude Code
- */
-async function setupMcpServers(dryRun = false) {
-    console.log('\n🔌 Setting up MCP servers for Claude Code...');
-    const servers = [
-        {
-            name: 'claude-flow',
-            command: 'npx claude-flow@alpha mcp start',
-            description: 'Claude Flow MCP server with swarm orchestration (alpha)',
-        },
-        {
-            name: 'ruv-swarm',
-            command: 'npx ruv-swarm mcp start',
-            description: 'ruv-swarm MCP server for enhanced coordination',
-        },
-    ];
-    for (const server of servers) {
-        try {
-            if (!dryRun) {
-                console.log(`  🔄 Adding ${server.name}...`);
-                execSync(`claude mcp add ${server.name} ${server.command}`, { stdio: 'inherit' });
-                console.log(`  ✅ Added ${server.name} - ${server.description}`);
-            }
-            else {
-                console.log(`  [DRY RUN] Would add ${server.name} - ${server.description}`);
-            }
-        }
-        catch (err) {
-            console.log(`  ⚠️  Failed to add ${server.name}: ${err.message}`);
-            console.log(`     You can add it manually with: claude mcp add ${server.name} ${server.command}`);
-        }
-    }
-    if (!dryRun) {
-        console.log('\n  📋 Verifying MCP servers...');
-        try {
-            execSync('claude mcp list', { stdio: 'inherit' });
-        }
-        catch (err) {
-            console.log('  ⚠️  Could not verify MCP servers');
-        }
-    }
-}
-export async function initCommand(subArgs, flags) {
-    // Show help if requested
-    if (flags.help || flags.h || subArgs.includes('--help') || subArgs.includes('-h')) {
-        showInitHelp();
-        return;
-    }
-    // Default to enhanced Claude Flow v2 init
-    // Use --basic flag for old behavior
-    if (!flags.basic && !flags.minimal && !flags.sparc) {
-        return await enhancedClaudeFlowInit(flags, subArgs);
-    }
-    // Check for validation and rollback commands
-    if (subArgs.includes('--validate') || subArgs.includes('--validate-only')) {
-        return handleValidationCommand(subArgs, flags);
-    }
-    if (subArgs.includes('--rollback')) {
-        return handleRollbackCommand(subArgs, flags);
-    }
-    if (subArgs.includes('--list-backups')) {
-        return handleListBackups(subArgs, flags);
-    }
-    // Check for batch operations
-    const batchInitFlag = flags['batch-init'] || subArgs.includes('--batch-init');
-    const configFlag = flags.config || subArgs.includes('--config');
-    if (batchInitFlag || configFlag) {
-        return handleBatchInit(subArgs, flags);
-    }
-    // Check if enhanced initialization is requested
-    const useEnhanced = subArgs.includes('--enhanced') || subArgs.includes('--safe');
-    if (useEnhanced) {
-        return enhancedInitCommand(subArgs, flags);
-    }
-    // Parse init options
-    const initForce = subArgs.includes('--force') || subArgs.includes('-f') || flags.force;
-    const initMinimal = subArgs.includes('--minimal') || subArgs.includes('-m') || flags.minimal;
-    const initSparc = true; // SPARC is now included by default
-    const initDryRun = subArgs.includes('--dry-run') || subArgs.includes('-d') || flags.dryRun;
-    const initOptimized = initSparc && initForce; // Use optimized templates when both flags are present
-    const selectedModes = flags.modes ? flags.modes.split(',') : null; // Support selective mode initialization
-    // Get the actual working directory (where the command was run from)
-    // Use PWD environment variable which preserves the original directory
-    const workingDir = process.env.PWD || cwd();
-    console.log(`📁 Initializing in: ${workingDir}`);
-    // Change to the working directory to ensure all file operations happen there
-    try {
-        process.chdir(workingDir);
-    }
-    catch (err) {
-        printWarning(`Could not change to directory ${workingDir}: ${err.message}`);
-    }
-    try {
-        printSuccess('Initializing Claude Code integration files...');
-        // Check if files already exist in the working directory
-        const files = ['CLAUDE.md', 'memory-bank.md', 'coordination.md'];
-        const existingFiles = [];
-        for (const file of files) {
-            try {
-                await Deno.stat(`${workingDir}/${file}`);
-                existingFiles.push(file);
-            }
-            catch {
-                // File doesn't exist, which is what we want
-            }
-        }
-        if (existingFiles.length > 0 && !initForce) {
-            printWarning(`The following files already exist: ${existingFiles.join(', ')}`);
-            console.log('Use --force to overwrite existing files');
-            return;
-        }
-        // Use template copier to copy all template files
-        const templateOptions = {
-            sparc: initSparc,
-            minimal: initMinimal,
-            optimized: initOptimized,
-            dryRun: initDryRun,
-            force: initForce,
-            selectedModes: selectedModes,
-        };
-        // First try to copy revised templates from repository
-        const validation = validateTemplatesExist();
-        if (validation.valid) {
-            console.log('  📁 Copying revised template files...');
-            const revisedResults = await copyRevisedTemplates(workingDir, {
-                force: initForce,
-                dryRun: initDryRun,
-                verbose: true,
-                sparc: initSparc
-            });
-            if (revisedResults.success) {
-                console.log(`  ✅ Copied ${revisedResults.copiedFiles.length} template files`);
-                if (revisedResults.skippedFiles.length > 0) {
-                    console.log(`  ⏭️  Skipped ${revisedResults.skippedFiles.length} existing files`);
-                }
-            }
-            else {
-                console.log('  ⚠️  Some template files could not be copied:');
-                revisedResults.errors.forEach(err => console.log(`    - ${err}`));
-            }
-        }
-        else {
-            // Fall back to generated templates
-            console.log('  ⚠️  Revised templates not available, using generated templates');
-            const copyResults = await copyTemplates(workingDir, templateOptions);
-            if (!copyResults.success) {
-                printError('Failed to copy templates:');
-                copyResults.errors.forEach(err => console.log(`  ❌ ${err}`));
-                return;
-            }
-        }
-        // Directory structure is created by template copier
-        // SPARC files are created by template copier when --sparc flag is used
-        // Memory README files and persistence database are created by template copier
-        // Create local claude-flow executable wrapper
-        if (!initDryRun) {
-            await createLocalExecutable(workingDir);
-        }
-        else {
-            console.log('  [DRY RUN] Would create local claude-flow executable wrapper');
-        }
-        // SPARC initialization
-        if (initSparc) {
-            console.log('\n🚀 Initializing SPARC development environment...');
-            if (initDryRun) {
-                console.log('  [DRY RUN] Would run: npx -y create-sparc init --force');
-                console.log('  [DRY RUN] Would create SPARC environment with all modes');
-                console.log('  [DRY RUN] Would create Claude slash commands' +
-                    (initOptimized ? ' (Batchtools-optimized)' : ''));
-                if (selectedModes) {
-                    console.log(`  [DRY RUN] Would create commands for selected modes: ${selectedModes.join(', ')}`);
-                }
-            }
-            else {
-                // Check if create-sparc exists and run it
-                let sparcInitialized = false;
-                try {
-                    // Use isolated NPX cache to prevent concurrent conflicts
-                    const createSparcCommand = new Deno.Command('npx', {
-                        args: ['-y', 'create-sparc', 'init', '--force'],
-                        cwd: workingDir, // Use the original working directory
-                        stdout: 'inherit',
-                        stderr: 'inherit',
-                        env: getIsolatedNpxEnv({
-                            PWD: workingDir, // Ensure PWD is set correctly
-                        }),
-                    });
-                    console.log('  🔄 Running: npx -y create-sparc init --force');
-                    const createSparcResult = await createSparcCommand.output();
-                    if (createSparcResult.success) {
-                        console.log('  ✅ SPARC environment initialized successfully');
-                        sparcInitialized = true;
-                    }
-                    else {
-                        printWarning('create-sparc failed, creating basic SPARC structure manually...');
-                        // Fallback: create basic SPARC structure manually
-                        await createSparcStructureManually();
-                        sparcInitialized = true; // Manual creation still counts as initialized
-                    }
-                }
-                catch (err) {
-                    printWarning('create-sparc not available, creating basic SPARC structure manually...');
-                    // Fallback: create basic SPARC structure manually
-                    await createSparcStructureManually();
-                    sparcInitialized = true; // Manual creation still counts as initialized
-                }
-                // Always create Claude slash commands after SPARC initialization
-                if (sparcInitialized) {
-                    try {
-                        if (initOptimized) {
-                            await createOptimizedClaudeSlashCommands(workingDir, selectedModes);
-                        }
-                        else {
-                            await createClaudeSlashCommands(workingDir);
-                        }
-                    }
-                    catch (err) {
-                        printWarning(`Could not create Claude Code slash commands: ${err.message}`);
-                    }
-                }
-            }
-        }
-        if (initDryRun) {
-            printSuccess("🔍 Dry run completed! Here's what would be created:");
-            console.log('\n📋 Summary of planned initialization:');
-            console.log(`  • Configuration: ${initOptimized ? 'Batchtools-optimized SPARC' : initSparc ? 'SPARC-enhanced' : 'Standard'}`);
-            console.log(`  • Template type: ${initOptimized ? 'Optimized for parallel processing' : 'Standard'}`);
-            console.log('  • Core files: CLAUDE.md, memory-bank.md, coordination.md');
-            console.log('  • Directory structure: memory/, coordination/, .claude/');
-            console.log('  • Local executable: ./claude-flow');
-            if (initSparc) {
-                console.log(`  • Claude Code slash commands: ${selectedModes ? selectedModes.length : 'All'} SPARC mode commands`);
-                console.log('  • SPARC environment with all development modes');
-            }
-            if (initOptimized) {
-                console.log('  • Batchtools optimization: Enabled for parallel processing');
-                console.log('  • Performance enhancements: Smart batching, concurrent operations');
-            }
-            console.log('\n🚀 To proceed with initialization, run the same command without --dry-run');
-        }
-        else {
-            printSuccess('🎉 Claude Code integration files initialized successfully!');
-            if (initOptimized) {
-                console.log('\n⚡ Batchtools Optimization Enabled!');
-                console.log('  • Parallel processing capabilities activated');
-                console.log('  • Performance improvements: 250-500% faster operations');
-                console.log('  • Smart batching and concurrent operations available');
-            }
-            console.log('\n📋 What was created:');
-            console.log(`  ✅ CLAUDE.md (${initOptimized ? 'Batchtools-optimized' : initSparc ? 'SPARC-enhanced' : 'Standard configuration'})`);
-            console.log(`  ✅ memory-bank.md (${initOptimized ? 'With parallel processing' : 'Standard memory system'})`);
-            console.log(`  ✅ coordination.md (${initOptimized ? 'Enhanced with batchtools' : 'Standard coordination'})`);
-            console.log('  ✅ Directory structure with memory/ and coordination/');
-            console.log('  ✅ Local executable at ./claude-flow');
-            console.log('  ✅ Persistence database at memory/claude-flow-data.json');
-            if (initSparc) {
-                const modeCount = selectedModes ? selectedModes.length : '20+';
-                console.log(`  ✅ Claude Code slash commands (${modeCount} SPARC modes)`);
-                console.log('  ✅ Complete SPARC development environment');
-            }
-            console.log('\n🚀 Next steps:');
-            console.log('1. Review and customize the generated files for your project');
-            console.log("2. Run './claude-flow start' to begin the orchestration system");
-            console.log("3. Use './claude-flow' instead of 'npx claude-flow' for all commands");
-            console.log("4. Use 'claude --dangerously-skip-permissions' for unattended operation");
-            if (initSparc) {
-                console.log('5. Use Claude Code slash commands: /sparc, /sparc-architect, /sparc-tdd, etc.');
-                console.log("6. Explore SPARC modes with './claude-flow sparc modes'");
-                console.log('7. Try TDD workflow with \'./claude-flow sparc tdd "your task"\'');
-                if (initOptimized) {
-                    console.log('8. Use batchtools commands: /batchtools, /performance for optimization');
-                    console.log('9. Enable parallel processing with --parallel flags');
-                    console.log("10. Monitor performance with './claude-flow performance monitor'");
-                }
-            }
-            // Update .gitignore
-            const gitignoreResult = await updateGitignore(workingDir, initForce, initDryRun);
-            if (gitignoreResult.success) {
-                if (!initDryRun) {
-                    console.log(`  ✅ ${gitignoreResult.message}`);
-                }
-                else {
-                    console.log(`  ${gitignoreResult.message}`);
-                }
-            }
-            else {
-                console.log(`  ⚠️  ${gitignoreResult.message}`);
-            }
-            console.log('\n💡 Tips:');
-            console.log("  • Type '/' in Claude Code to see all available slash commands");
-            console.log("  • Use './claude-flow status' to check system health");
-            console.log("  • Store important context with './claude-flow memory store'");
-            if (initOptimized) {
-                console.log('  • Use --parallel flags for concurrent operations');
-                console.log('  • Enable batch processing for multiple related tasks');
-                console.log('  • Monitor performance with real-time metrics');
-            }
-            // Check for Claude Code and set up MCP servers (always enabled by default)
-            if (!initDryRun && isClaudeCodeInstalled()) {
-                console.log('\n🔍 Claude Code CLI detected!');
-                const skipMcp = subArgs && subArgs.includes && subArgs.includes('--skip-mcp');
-                if (!skipMcp) {
-                    await setupMcpServers(initDryRun);
-                }
-                else {
-                    console.log('  ℹ️  Skipping MCP setup (--skip-mcp flag used)');
-                }
-            }
-            else if (!initDryRun && !isClaudeCodeInstalled()) {
-                console.log('\n⚠️  Claude Code CLI not detected!');
-                console.log('  📥 Install with: npm install -g @anthropic-ai/claude-code');
-                console.log('  📋 Then add MCP servers manually with:');
-                console.log('     claude mcp add claude-flow claude-flow mcp start');
-                console.log('     claude mcp add ruv-swarm npx ruv-swarm mcp start');
-            }
-        }
-    }
-    catch (err) {
-        printError(`Failed to initialize files: ${err.message}`);
-    }
-}
-// Handle batch initialization
-async function handleBatchInit(subArgs, flags) {
-    try {
-        // Options parsing from flags and subArgs
-        const options = {
-            parallel: !flags['no-parallel'] && flags.parallel !== false,
-            sparc: flags.sparc || flags.s,
-            minimal: flags.minimal || flags.m,
-            force: flags.force || flags.f,
-            maxConcurrency: flags['max-concurrent'] || 5,
-            progressTracking: true,
-            template: flags.template,
-            environments: flags.environments
-                ? flags.environments.split(',').map((env) => env.trim())
-                : ['dev'],
-        };
-        // Validate options
-        const validationErrors = validateBatchOptions(options);
-        if (validationErrors.length > 0) {
-            printError('Batch options validation failed:');
-            validationErrors.forEach((error) => console.error(`  - ${error}`));
-            return;
-        }
-        // Config file mode
-        if (flags.config) {
-            const configFile = flags.config;
-            printSuccess(`Loading batch configuration from: ${configFile}`);
-            const results = await batchInitFromConfig(configFile, options);
-            if (results) {
-                printSuccess('Batch initialization from config completed');
-            }
-            return;
-        }
-        // Batch init mode
-        if (flags['batch-init']) {
-            const projectsString = flags['batch-init'];
-            const projects = projectsString.split(',').map((project) => project.trim());
-            if (projects.length === 0) {
-                printError('No projects specified for batch initialization');
-                return;
-            }
-            printSuccess(`Initializing ${projects.length} projects in batch mode`);
-            const results = await batchInitCommand(projects, options);
-            if (results) {
-                const successful = results.filter((r) => r.success).length;
-                const failed = results.filter((r) => !r.success).length;
-                if (failed === 0) {
-                    printSuccess(`All ${successful} projects initialized successfully`);
-                }
-                else {
-                    printWarning(`${successful} projects succeeded, ${failed} failed`);
-                }
-            }
-            return;
-        }
-        printError('No batch operation specified. Use --batch-init <projects> or --config <file>');
-    }
-    catch (err) {
-        printError(`Batch initialization failed: ${err.message}`);
-    }
-}
-/**
- * Enhanced initialization command with validation and rollback
- */
-async function enhancedInitCommand(subArgs, flags) {
-    console.log('🛡️  Starting enhanced initialization with validation and rollback...');
-    // Store parameters to avoid scope issues in async context
-    const args = subArgs || [];
-    const options = flags || {};
-    // Get the working directory
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    // Initialize systems
-    const rollbackSystem = new RollbackSystem(workingDir);
-    const validationSystem = new ValidationSystem(workingDir);
-    let atomicOp = null;
-    try {
-        // Parse options
-        const initOptions = {
-            force: args.includes('--force') || args.includes('-f') || options.force,
-            minimal: args.includes('--minimal') || args.includes('-m') || options.minimal,
-            sparc: args.includes('--sparc') || args.includes('-s') || options.sparc,
-            skipPreValidation: args.includes('--skip-pre-validation'),
-            skipBackup: args.includes('--skip-backup'),
-            validateOnly: args.includes('--validate-only'),
-        };
-        // Phase 1: Pre-initialization validation
-        if (!initOptions.skipPreValidation) {
-            console.log('\n🔍 Phase 1: Pre-initialization validation...');
-            const preValidation = await validationSystem.validatePreInit(initOptions);
-            if (!preValidation.success) {
-                printError('Pre-initialization validation failed:');
-                preValidation.errors.forEach((error) => console.error(`  ❌ ${error}`));
-                return;
-            }
-            if (preValidation.warnings.length > 0) {
-                printWarning('Pre-initialization warnings:');
-                preValidation.warnings.forEach((warning) => console.warn(`  ⚠️  ${warning}`));
-            }
-            printSuccess('Pre-initialization validation passed');
-        }
-        // Stop here if validation-only mode
-        if (options.validateOnly) {
-            console.log('\n✅ Validation-only mode completed');
-            return;
-        }
-        // Phase 2: Create backup
-        if (!options.skipBackup) {
-            console.log('\n💾 Phase 2: Creating backup...');
-            const backupResult = await rollbackSystem.createPreInitBackup();
-            if (!backupResult.success) {
-                printError('Backup creation failed:');
-                backupResult.errors.forEach((error) => console.error(`  ❌ ${error}`));
-                return;
-            }
-        }
-        // Phase 3: Initialize with atomic operations
-        console.log('\n🔧 Phase 3: Atomic initialization...');
-        atomicOp = createAtomicOperation(rollbackSystem, 'enhanced-init');
-        const atomicBegin = await atomicOp.begin();
-        if (!atomicBegin) {
-            printError('Failed to begin atomic operation');
-            return;
-        }
-        // Perform initialization steps with checkpoints
-        await performInitializationWithCheckpoints(rollbackSystem, options, workingDir, dryRun);
-        // Phase 4: Post-initialization validation
-        console.log('\n✅ Phase 4: Post-initialization validation...');
-        const postValidation = await validationSystem.validatePostInit();
-        if (!postValidation.success) {
-            printError('Post-initialization validation failed:');
-            postValidation.errors.forEach((error) => console.error(`  ❌ ${error}`));
-            // Attempt automatic rollback
-            console.log('\n🔄 Attempting automatic rollback...');
-            await atomicOp.rollback();
-            printWarning('Initialization rolled back due to validation failure');
-            return;
-        }
-        // Phase 5: Configuration validation
-        console.log('\n🔧 Phase 5: Configuration validation...');
-        const configValidation = await validationSystem.validateConfiguration();
-        if (configValidation.warnings.length > 0) {
-            printWarning('Configuration warnings:');
-            configValidation.warnings.forEach((warning) => console.warn(`  ⚠️  ${warning}`));
-        }
-        // Phase 6: Health checks
-        console.log('\n🏥 Phase 6: System health checks...');
-        const healthChecks = await validationSystem.runHealthChecks();
-        if (healthChecks.warnings.length > 0) {
-            printWarning('Health check warnings:');
-            healthChecks.warnings.forEach((warning) => console.warn(`  ⚠️  ${warning}`));
-        }
-        // Commit atomic operation
-        await atomicOp.commit();
-        // Generate and display validation report
-        const fullValidation = await runFullValidation(workingDir, {
-            postInit: true,
-            skipPreInit: options.skipPreValidation,
-        });
-        console.log('\n📊 Validation Report:');
-        console.log(fullValidation.report);
-        printSuccess('🎉 Enhanced initialization completed successfully!');
-        console.log('\n✨ Your SPARC environment is fully validated and ready to use');
-    }
-    catch (error) {
-        printError(`Enhanced initialization failed: ${error.message}`);
-        // Attempt rollback if atomic operation is active
-        if (atomicOp && !atomicOp.completed) {
-            console.log('\n🔄 Performing emergency rollback...');
-            try {
-                await atomicOp.rollback();
-                printWarning('Emergency rollback completed');
-            }
-            catch (rollbackError) {
-                printError(`Rollback also failed: ${rollbackError.message}`);
-            }
-        }
-    }
-}
-/**
- * Handle validation commands
- */
-async function handleValidationCommand(subArgs, flags) {
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    console.log('🔍 Running validation checks...');
-    const options = {
-        skipPreInit: subArgs.includes('--skip-pre-init'),
-        skipConfig: subArgs.includes('--skip-config'),
-        skipModeTest: subArgs.includes('--skip-mode-test'),
-        postInit: !subArgs.includes('--pre-init-only'),
-    };
-    try {
-        const validationResults = await runFullValidation(workingDir, options);
-        console.log('\n📊 Validation Results:');
-        console.log(validationResults.report);
-        if (validationResults.success) {
-            printSuccess('✅ All validation checks passed');
-        }
-        else {
-            printError('❌ Some validation checks failed');
-            process.exit(1);
-        }
-    }
-    catch (error) {
-        printError(`Validation failed: ${error.message}`);
-        process.exit(1);
-    }
-}
-/**
- * Handle rollback commands
- */
-async function handleRollbackCommand(subArgs, flags) {
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    const rollbackSystem = new RollbackSystem(workingDir);
-    try {
-        // Check for specific rollback options
-        if (subArgs.includes('--full')) {
-            console.log('🔄 Performing full rollback...');
-            const result = await rollbackSystem.performFullRollback();
-            if (result.success) {
-                printSuccess('Full rollback completed successfully');
-            }
-            else {
-                printError('Full rollback failed:');
-                result.errors.forEach((error) => console.error(`  ❌ ${error}`));
-            }
-        }
-        else if (subArgs.includes('--partial')) {
-            const phaseIndex = subArgs.findIndex((arg) => arg === '--phase');
-            if (phaseIndex !== -1 && subArgs[phaseIndex + 1]) {
-                const phase = subArgs[phaseIndex + 1];
-                console.log(`🔄 Performing partial rollback for phase: ${phase}`);
-                const result = await rollbackSystem.performPartialRollback(phase);
-                if (result.success) {
-                    printSuccess(`Partial rollback completed for phase: ${phase}`);
-                }
-                else {
-                    printError(`Partial rollback failed for phase: ${phase}`);
-                    result.errors.forEach((error) => console.error(`  ❌ ${error}`));
-                }
-            }
-            else {
-                printError('Partial rollback requires --phase <phase-name>');
-            }
-        }
-        else {
-            // Interactive rollback point selection
-            const rollbackPoints = await rollbackSystem.listRollbackPoints();
-            if (rollbackPoints.rollbackPoints.length === 0) {
-                printWarning('No rollback points available');
-                return;
-            }
-            console.log('\n📋 Available rollback points:');
-            rollbackPoints.rollbackPoints.forEach((point, index) => {
-                const date = new Date(point.timestamp).toLocaleString();
-                console.log(`  ${index + 1}. ${point.type} - ${date}`);
-            });
-            // For now, rollback to the most recent point
-            const latest = rollbackPoints.rollbackPoints[0];
-            if (latest) {
-                console.log(`\n🔄 Rolling back to: ${latest.type} (${new Date(latest.timestamp).toLocaleString()})`);
-                const result = await rollbackSystem.performFullRollback(latest.backupId);
-                if (result.success) {
-                    printSuccess('Rollback completed successfully');
-                }
-                else {
-                    printError('Rollback failed');
-                }
-            }
-        }
-    }
-    catch (error) {
-        printError(`Rollback operation failed: ${error.message}`);
-    }
-}
-/**
- * Handle list backups command
- */
-async function handleListBackups(subArgs, flags) {
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    const rollbackSystem = new RollbackSystem(workingDir);
-    try {
-        const rollbackPoints = await rollbackSystem.listRollbackPoints();
-        console.log('\n📋 Rollback Points and Backups:');
-        if (rollbackPoints.rollbackPoints.length === 0) {
-            console.log('  No rollback points available');
-        }
-        else {
-            console.log('\n🔄 Rollback Points:');
-            rollbackPoints.rollbackPoints.forEach((point, index) => {
-                const date = new Date(point.timestamp).toLocaleString();
-                console.log(`  ${index + 1}. ${point.type} - ${date} (${point.backupId || 'No backup'})`);
-            });
-        }
-        if (rollbackPoints.checkpoints.length > 0) {
-            console.log('\n📍 Checkpoints:');
-            rollbackPoints.checkpoints.slice(-5).forEach((checkpoint, index) => {
-                const date = new Date(checkpoint.timestamp).toLocaleString();
-                console.log(`  ${index + 1}. ${checkpoint.phase} - ${date} (${checkpoint.status})`);
-            });
-        }
-    }
-    catch (error) {
-        printError(`Failed to list backups: ${error.message}`);
-    }
-}
-/**
- * Perform initialization with checkpoints
- */
-async function performInitializationWithCheckpoints(rollbackSystem, options, workingDir, dryRun = false) {
-    const phases = [
-        { name: 'file-creation', action: () => createInitialFiles(options, workingDir, dryRun) },
-        { name: 'directory-structure', action: () => createDirectoryStructure(workingDir, dryRun) },
-        { name: 'memory-setup', action: () => setupMemorySystem(workingDir, dryRun) },
-        { name: 'coordination-setup', action: () => setupCoordinationSystem(workingDir, dryRun) },
-        { name: 'executable-creation', action: () => createLocalExecutable(workingDir, dryRun) },
-    ];
-    if (options.sparc) {
-        phases.push({ name: 'sparc-init', action: () => createSparcStructureManually() }, { name: 'claude-commands', action: () => createClaudeSlashCommands(workingDir) });
-    }
-    for (const phase of phases) {
-        console.log(`  🔧 ${phase.name}...`);
-        // Create checkpoint before phase
-        await rollbackSystem.createCheckpoint(phase.name, {
-            timestamp: Date.now(),
-            phase: phase.name,
-        });
-        try {
-            await phase.action();
-            console.log(`  ✅ ${phase.name} completed`);
-        }
-        catch (error) {
-            console.error(`  ❌ ${phase.name} failed: ${error.message}`);
-            throw error;
-        }
-    }
-}
-// Helper functions for atomic initialization
-async function createInitialFiles(options, workingDir, dryRun = false) {
-    if (!dryRun) {
-        const claudeMd = options.sparc
-            ? createSparcClaudeMd()
-            : options.minimal
-                ? createMinimalClaudeMd()
-                : createFullClaudeMd();
-        await Deno.writeTextFile(`${workingDir}/CLAUDE.md`, claudeMd);
-        const memoryBankMd = options.minimal ? createMinimalMemoryBankMd() : createFullMemoryBankMd();
-        await Deno.writeTextFile(`${workingDir}/memory-bank.md`, memoryBankMd);
-        const coordinationMd = options.minimal
-            ? createMinimalCoordinationMd()
-            : createFullCoordinationMd();
-        await Deno.writeTextFile(`${workingDir}/coordination.md`, coordinationMd);
-    }
-}
-async function createDirectoryStructure(workingDir, dryRun = false) {
-    const directories = [
-        'memory',
-        'memory/agents',
-        'memory/sessions',
-        'coordination',
-        'coordination/memory_bank',
-        'coordination/subtasks',
-        'coordination/orchestration',
-        '.claude',
-        '.claude/commands',
-        '.claude/logs',
-    ];
-    if (!dryRun) {
-        for (const dir of directories) {
-            await Deno.mkdir(`${workingDir}/${dir}`, { recursive: true });
-        }
-    }
-}
-async function setupMemorySystem(workingDir, dryRun = false) {
-    if (!dryRun) {
-        const initialData = { agents: [], tasks: [], lastUpdated: Date.now() };
-        await Deno.writeTextFile(`${workingDir}/memory/claude-flow-data.json`, JSON.stringify(initialData, null, 2));
-        await Deno.writeTextFile(`${workingDir}/memory/agents/README.md`, createAgentsReadme());
-        await Deno.writeTextFile(`${workingDir}/memory/sessions/README.md`, createSessionsReadme());
-    }
-}
-async function setupCoordinationSystem(workingDir, dryRun = false) {
-    // Coordination system is already set up by createDirectoryStructure
-    // This is a placeholder for future coordination setup logic
-}
-/**
- * Enhanced Claude Flow v2.0.0 initialization
- */
-async function enhancedClaudeFlowInit(flags, subArgs = []) {
-    console.log('🚀 Initializing Claude Flow v2.0.0 with enhanced features...');
-    const workingDir = process.cwd();
-    const force = flags.force || flags.f;
-    const dryRun = flags.dryRun || flags['dry-run'] || flags.d;
-    // Store parameters to avoid scope issues in async context
-    const args = subArgs || [];
-    const options = flags || {};
-    // Import fs module for Node.js
-    const fs = await import('fs/promises');
-    const { chmod } = fs;
-    try {
-        // Check existing files
-        const existingFiles = [];
-        const filesToCheck = [
-            'CLAUDE.md',
-            '.claude/settings.json',
-            '.mcp.json',
-            'claude-flow.config.json',
-        ];
-        for (const file of filesToCheck) {
-            if (existsSync(`${workingDir}/${file}`)) {
-                existingFiles.push(file);
-            }
-        }
-        if (existingFiles.length > 0 && !force) {
-            printWarning(`The following files already exist: ${existingFiles.join(', ')}`);
-            console.log('Use --force to overwrite existing files');
-            return;
-        }
-        // Create CLAUDE.md
-        if (!dryRun) {
-            await Deno.writeTextFile(`${workingDir}/CLAUDE.md`, createEnhancedClaudeMd());
-            printSuccess('✓ Created CLAUDE.md (Claude Flow v2.0.0)');
-        }
-        else {
-            console.log('[DRY RUN] Would create CLAUDE.md (Claude Flow v2.0.0)');
-        }
-        // Create .claude directory structure
-        const claudeDir = `${workingDir}/.claude`;
-        if (!dryRun) {
-            await Deno.mkdir(claudeDir, { recursive: true });
-            await Deno.mkdir(`${claudeDir}/commands`, { recursive: true });
-            await Deno.mkdir(`${claudeDir}/helpers`, { recursive: true });
-            printSuccess('✓ Created .claude directory structure');
-        }
-        else {
-            console.log('[DRY RUN] Would create .claude directory structure');
-        }
-        // Create settings.json
-        if (!dryRun) {
-            await Deno.writeTextFile(`${claudeDir}/settings.json`, createEnhancedSettingsJson());
-            printSuccess('✓ Created .claude/settings.json with hooks and MCP configuration');
-        }
-        else {
-            console.log('[DRY RUN] Would create .claude/settings.json');
-        }
-        // Create settings.local.json with default MCP permissions
-        const settingsLocal = {
-            permissions: {
-                allow: ['mcp__ruv-swarm', 'mcp__claude-flow'],
-                deny: [],
-            },
-        };
-        if (!dryRun) {
-            await Deno.writeTextFile(`${claudeDir}/settings.local.json`, JSON.stringify(settingsLocal, null, 2));
-            printSuccess('✓ Created .claude/settings.local.json with default MCP permissions');
-        }
-        else {
-            console.log('[DRY RUN] Would create .claude/settings.local.json with default MCP permissions');
-        }
-        // Create .mcp.json at project root for MCP server configuration
-        const mcpConfig = {
-            mcpServers: {
-                'claude-flow': {
-                    command: 'npx',
-                    args: ['claude-flow@alpha', 'mcp', 'start'],
-                    type: 'stdio',
-                },
-                'ruv-swarm': {
-                    command: 'npx',
-                    args: ['ruv-swarm@latest', 'mcp', 'start'],
-                    type: 'stdio',
-                },
-            },
-        };
-        if (!dryRun) {
-            await Deno.writeTextFile(`${workingDir}/.mcp.json`, JSON.stringify(mcpConfig, null, 2));
-            printSuccess('✓ Created .mcp.json at project root for MCP server configuration');
-        }
-        else {
-            console.log('[DRY RUN] Would create .mcp.json at project root for MCP server configuration');
-        }
-        // Create claude-flow.config.json for Claude Flow specific settings
-        const claudeFlowConfig = {
-            features: {
-                autoTopologySelection: true,
-                parallelExecution: true,
-                neuralTraining: true,
-                bottleneckAnalysis: true,
-                smartAutoSpawning: true,
-                selfHealingWorkflows: true,
-                crossSessionMemory: true,
-                githubIntegration: true,
-            },
-            performance: {
-                maxAgents: 10,
-                defaultTopology: 'hierarchical',
-                executionStrategy: 'parallel',
-                tokenOptimization: true,
-                cacheEnabled: true,
-                telemetryLevel: 'detailed',
-            },
-        };
-        if (!dryRun) {
-            await Deno.writeTextFile(`${workingDir}/claude-flow.config.json`, JSON.stringify(claudeFlowConfig, null, 2));
-            printSuccess('✓ Created claude-flow.config.json for Claude Flow settings');
-        }
-        else {
-            console.log('[DRY RUN] Would create claude-flow.config.json for Claude Flow settings');
-        }
-        // Create command documentation
-        for (const [category, commands] of Object.entries(COMMAND_STRUCTURE)) {
-            const categoryDir = `${claudeDir}/commands/${category}`;
-            if (!dryRun) {
-                await Deno.mkdir(categoryDir, { recursive: true });
-                // Create category README
-                const categoryReadme = `# ${category.charAt(0).toUpperCase() + category.slice(1)} Commands
-
-Commands for ${category} operations in Claude Flow.
-
-## Available Commands
-
-${commands.map((cmd) => `- [${cmd}](./${cmd}.md)`).join('\n')}
-`;
-                await Deno.writeTextFile(`${categoryDir}/README.md`, categoryReadme);
-                // Create individual command docs
-                for (const command of commands) {
-                    const doc = createCommandDoc(category, command);
-                    if (doc) {
-                        await Deno.writeTextFile(`${categoryDir}/${command}.md`, doc);
-                    }
-                }
-                console.log(`  ✓ Created ${commands.length} ${category} command docs`);
-            }
-            else {
-                console.log(`[DRY RUN] Would create ${commands.length} ${category} command docs`);
-            }
-        }
-        // Create wrapper scripts
-        if (!dryRun) {
-            // Unix wrapper - now uses universal ES module compatible wrapper
-            const unixWrapper = createWrapperScript('unix');
-            await Deno.writeTextFile(`${workingDir}/claude-flow`, unixWrapper);
-            await fs.chmod(`${workingDir}/claude-flow`, 0o755);
-            // Windows wrapper
-            await Deno.writeTextFile(`${workingDir}/claude-flow.bat`, createWrapperScript('windows'));
-            // PowerShell wrapper
-            await Deno.writeTextFile(`${workingDir}/claude-flow.ps1`, createWrapperScript('powershell'));
-            printSuccess('✓ Created platform-specific wrapper scripts');
-        }
-        else {
-            console.log('[DRY RUN] Would create wrapper scripts');
-        }
-        // Create helper scripts
-        const helpers = ['setup-mcp.sh', 'quick-start.sh', 'github-setup.sh'];
-        for (const helper of helpers) {
-            if (!dryRun) {
-                const content = createHelperScript(helper);
-                if (content) {
-                    await Deno.writeTextFile(`${claudeDir}/helpers/${helper}`, content);
-                    await fs.chmod(`${claudeDir}/helpers/${helper}`, 0o755);
-                }
-            }
-        }
-        if (!dryRun) {
-            printSuccess(`✓ Created ${helpers.length} helper scripts`);
-        }
-        else {
-            console.log(`[DRY RUN] Would create ${helpers.length} helper scripts`);
-        }
-        // Create standard directories from original init
-        const standardDirs = [
-            'memory',
-            'memory/agents',
-            'memory/sessions',
-            'coordination',
-            'coordination/memory_bank',
-            'coordination/subtasks',
-            'coordination/orchestration',
-            '.swarm', // Add .swarm directory for shared memory
-            '.hive-mind', // Add .hive-mind directory for hive-mind system
-        ];
-        for (const dir of standardDirs) {
-            if (!dryRun) {
-                await fs.mkdir(`${workingDir}/${dir}`, { recursive: true });
-            }
-        }
-        if (!dryRun) {
-            printSuccess('✓ Created standard directory structure');
-            // Initialize memory system
-            const initialData = { agents: [], tasks: [], lastUpdated: Date.now() };
-            await fs.writeFile(`${workingDir}/memory/claude-flow-data.json`, JSON.stringify(initialData, null, 2));
-            // Create README files
-            await fs.writeFile(`${workingDir}/memory/agents/README.md`, createAgentsReadme());
-            await fs.writeFile(`${workingDir}/memory/sessions/README.md`, createSessionsReadme());
-            printSuccess('✓ Initialized memory system');
-            // Initialize memory database with fallback support
-            try {
-                // Import and initialize FallbackMemoryStore to create the database
-                const { FallbackMemoryStore } = await import('../../../memory/fallback-store.js');
-                const memoryStore = new FallbackMemoryStore();
-                await memoryStore.initialize();
-                if (memoryStore.isUsingFallback()) {
-                    printSuccess('✓ Initialized memory system (in-memory fallback for npx compatibility)');
-                    console.log('  💡 For persistent storage, install locally: npm install claude-flow@alpha');
-                }
-                else {
-                    printSuccess('✓ Initialized memory database (.swarm/memory.db)');
-                }
-                memoryStore.close();
-            }
-            catch (err) {
-                console.log(`  ⚠️  Could not initialize memory system: ${err.message}`);
-                console.log('     Memory will be initialized on first use');
-            }
-            // Initialize hive-mind configuration
-            try {
-                const hiveMindConfig = {
-                    version: '2.0.0',
-                    initialized: new Date().toISOString(),
-                    defaults: {
-                        queenType: 'strategic',
-                        maxWorkers: 8,
-                        consensusAlgorithm: 'majority',
-                        memorySize: 100,
-                        autoScale: true,
-                        encryption: false,
-                    },
-                    mcpTools: {
-                        enabled: true,
-                        parallel: true,
-                        timeout: 60000,
-                    },
-                };
-                await fs.writeFile(`${workingDir}/.hive-mind/config.json`, JSON.stringify(hiveMindConfig, null, 2));
-                // Initialize hive.db
-                try {
-                    const Database = (await import('better-sqlite3')).default;
-                    const hivePath = `${workingDir}/.hive-mind/hive.db`;
-                    const hiveDb = new Database(hivePath);
-                    // Create initial tables
-                    hiveDb.exec(`
-            CREATE TABLE IF NOT EXISTS swarms (
-              id TEXT PRIMARY KEY,
-              name TEXT NOT NULL,
-              objective TEXT,
-              status TEXT DEFAULT 'active',
-              queen_type TEXT DEFAULT 'strategic',
-              created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
-              updated_at DATETIME DEFAULT CURRENT_TIMESTAMP
-            );
-            
-            CREATE TABLE IF NOT EXISTS agents (
-              id TEXT PRIMARY KEY,
-              swarm_id TEXT,
-              name TEXT NOT NULL,
-              type TEXT NOT NULL,
-              role TEXT,
-              capabilities TEXT,
-              status TEXT DEFAULT 'active',
-              performance_score REAL DEFAULT 0.5,
-              created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
-              FOREIGN KEY (swarm_id) REFERENCES swarms (id)
-            );
-            
-            CREATE TABLE IF NOT EXISTS messages (
-              id TEXT PRIMARY KEY,
-              swarm_id TEXT,
-              agent_id TEXT,
-              content TEXT NOT NULL,
-              type TEXT DEFAULT 'task',
-              timestamp DATETIME DEFAULT CURRENT_TIMESTAMP,
-              FOREIGN KEY (swarm_id) REFERENCES swarms (id),
-              FOREIGN KEY (agent_id) REFERENCES agents (id)
-            );
-          `);
-                    hiveDb.close();
-                    printSuccess('✓ Initialized hive-mind database (.hive-mind/hive.db)');
-                }
-                catch (dbErr) {
-                    console.log(`  ⚠️  Could not initialize hive-mind database: ${dbErr.message}`);
-                }
-                printSuccess('✓ Initialized hive-mind system');
-            }
-            catch (err) {
-                console.log(`  ⚠️  Could not initialize hive-mind system: ${err.message}`);
-            }
-        }
-        // Update .gitignore with Claude Flow entries
-        const gitignoreResult = await updateGitignore(workingDir, force, dryRun);
-        if (gitignoreResult.success) {
-            if (!dryRun) {
-                printSuccess(`✓ ${gitignoreResult.message}`);
-            }
-            else {
-                console.log(gitignoreResult.message);
-            }
-        }
-        else {
-            console.log(`  ⚠️  ${gitignoreResult.message}`);
-        }
-        // SPARC initialization (now included by default)
-        console.log('\n🚀 Initializing SPARC development environment...');
-        let sparcInitialized = false;
-        try {
-            // Run create-sparc
-            console.log('  🔄 Running: npx -y create-sparc init --force');
-            execSync('npx -y create-sparc init --force', {
-                cwd: workingDir,
-                stdio: 'inherit',
-            });
-            sparcInitialized = true;
-            printSuccess('✅ SPARC environment initialized successfully');
-        }
-        catch (err) {
-            console.log(`  ⚠️  Could not run create-sparc: ${err.message}`);
-            console.log('     SPARC features will be limited to basic functionality');
-        }
-        // Create Claude slash commands for SPARC
-        if (sparcInitialized && !dryRun) {
-            console.log('\n📝 Creating Claude Code slash commands...');
-            await createClaudeSlashCommands(workingDir);
-        }
-        // Check for Claude Code and set up MCP servers (always enabled by default)
-        if (!dryRun && isClaudeCodeInstalled()) {
-            console.log('\n🔍 Claude Code CLI detected!');
-            const skipMcp = (options && options['skip-mcp']) ||
-                (subArgs && subArgs.includes && subArgs.includes('--skip-mcp'));
-            if (!skipMcp) {
-                await setupMcpServers(dryRun);
-            }
-            else {
-                console.log('  ℹ️  Skipping MCP setup (--skip-mcp flag used)');
-                console.log('\n  📋 To add MCP servers manually:');
-                console.log('     claude mcp add claude-flow npx claude-flow@alpha mcp start');
-                console.log('     claude mcp add ruv-swarm npx ruv-swarm@latest mcp start');
-                console.log('\n  💡 MCP servers are defined in .mcp.json (project scope)');
-            }
-        }
-        else if (!dryRun && !isClaudeCodeInstalled()) {
-            console.log('\n⚠️  Claude Code CLI not detected!');
-            console.log('\n  📥 To install Claude Code:');
-            console.log('     npm install -g @anthropic-ai/claude-code');
-            console.log('\n  📋 After installing, add MCP servers:');
-            console.log('     claude mcp add claude-flow npx claude-flow@alpha mcp start');
-            console.log('     claude mcp add ruv-swarm npx ruv-swarm@latest mcp start');
-            console.log('\n  💡 MCP servers are defined in .mcp.json (project scope)');
-        }
-        // Final instructions
-        console.log('\n🎉 Claude Flow v2.0.0 initialization complete!');
-        console.log('\n📚 Quick Start:');
-        if (isClaudeCodeInstalled()) {
-            console.log('1. View available commands: ls .claude/commands/');
-            console.log('2. Start a swarm: npx claude-flow swarm init');
-            console.log('3. Use MCP tools in Claude Code for enhanced coordination');
-        }
-        else {
-            console.log('1. Install Claude Code: npm install -g @anthropic-ai/claude-code');
-            console.log('2. Add MCP servers (see instructions above)');
-            console.log('3. View available commands: ls .claude/commands/');
-            console.log('4. Start a swarm: npx claude-flow swarm init');
-        }
-        console.log('\n💡 Tips:');
-        console.log('• Check .claude/commands/ for detailed documentation');
-        console.log('• Use --help with any command for options');
-        console.log('• Enable GitHub integration with .claude/helpers/github-setup.sh');
-    }
-    catch (err) {
-        printError(`Failed to initialize Claude Flow v2.0.0: ${err.message}`);
-    }
-}
-//# sourceMappingURL=index.js.map