claude-flow 2.0.0-alpha.48 → 2.0.0-alpha.49

package/dist/cli/simple-commands/init/index.js

@@ -1,1042 +0,0 @@
-// init/index.js - Initialize Claude Code integration files
-import { printSuccess, printError, printWarning } from '../../utils.js';
-import { Deno, cwd, exit, existsSync } from '../../node-compat.js';
-import process from 'process';
-import { createLocalExecutable } from './executable-wrapper.js';
-import { createSparcStructureManually } from './sparc-structure.js';
-import { createClaudeSlashCommands } from './claude-commands/slash-commands.js';
-import { createOptimizedClaudeSlashCommands } from './claude-commands/optimized-slash-commands.js';
-import { execSync } from 'child_process';
-import { promises as fs } from 'fs';
-import { createSparcClaudeMd, createFullClaudeMd, createMinimalClaudeMd, createOptimizedSparcClaudeMd } from './templates/claude-md.js';
-import { createFullMemoryBankMd, createMinimalMemoryBankMd, createOptimizedMemoryBankMd } from './templates/memory-bank-md.js';
-import { createFullCoordinationMd, createMinimalCoordinationMd, createOptimizedCoordinationMd } from './templates/coordination-md.js';
-import { createAgentsReadme, createSessionsReadme } from './templates/readme-files.js';
-import { createSparcModeTemplates, createSparcModesOverview, createSwarmStrategyTemplates } from './templates/sparc-modes.js';
-import { showInitHelp } from './help.js';
-import { batchInitCommand, batchInitFromConfig, validateBatchOptions } from './batch-init.js';
-import { ValidationSystem, runFullValidation } from './validation/index.js';
-import { RollbackSystem, createAtomicOperation } from './rollback/index.js';
-import { createEnhancedClaudeMd, createEnhancedSettingsJson, createWrapperScript, createCommandDoc, createHelperScript, COMMAND_STRUCTURE } from './templates/enhanced-templates.js';
-/**
- * Check if Claude Code CLI is installed
- */
-function isClaudeCodeInstalled() {
-    try {
-        execSync('which claude', { stdio: 'ignore' });
-        return true;
-    }
-    catch {
-        return false;
-    }
-}
-/**
- * Set up MCP servers in Claude Code
- */
-async function setupMcpServers(dryRun = false) {
-    console.log('\n🔌 Setting up MCP servers for Claude Code...');
-    const servers = [
-        {
-            name: 'claude-flow',
-            command: 'npx claude-flow@alpha mcp start',
-            description: 'Claude Flow MCP server with swarm orchestration (alpha)'
-        },
-        {
-            name: 'ruv-swarm',
-            command: 'npx ruv-swarm mcp start',
-            description: 'ruv-swarm MCP server for enhanced coordination'
-        }
-    ];
-    for (const server of servers) {
-        try {
-            if (!dryRun) {
-                console.log(`  🔄 Adding ${server.name}...`);
-                execSync(`claude mcp add ${server.name} ${server.command}`, { stdio: 'inherit' });
-                console.log(`  ✅ Added ${server.name} - ${server.description}`);
-            }
-            else {
-                console.log(`  [DRY RUN] Would add ${server.name} - ${server.description}`);
-            }
-        }
-        catch (err) {
-            console.log(`  ⚠️  Failed to add ${server.name}: ${err.message}`);
-            console.log(`     You can add it manually with: claude mcp add ${server.name} ${server.command}`);
-        }
-    }
-    if (!dryRun) {
-        console.log('\n  📋 Verifying MCP servers...');
-        try {
-            execSync('claude mcp list', { stdio: 'inherit' });
-        }
-        catch (err) {
-            console.log('  ⚠️  Could not verify MCP servers');
-        }
-    }
-}
-export async function initCommand(subArgs, flags) {
-    // Show help if requested
-    if (flags.help || flags.h || subArgs.includes('--help') || subArgs.includes('-h')) {
-        showInitHelp();
-        return;
-    }
-    // Default to enhanced Claude Flow v2 init
-    // Use --basic flag for old behavior
-    if (!flags.basic && !flags.minimal && !flags.sparc) {
-        return await enhancedClaudeFlowInit(flags, subArgs);
-    }
-    // Check for validation and rollback commands
-    if (subArgs.includes('--validate') || subArgs.includes('--validate-only')) {
-        return handleValidationCommand(subArgs, flags);
-    }
-    if (subArgs.includes('--rollback')) {
-        return handleRollbackCommand(subArgs, flags);
-    }
-    if (subArgs.includes('--list-backups')) {
-        return handleListBackups(subArgs, flags);
-    }
-    // Check for batch operations
-    const batchInitFlag = flags['batch-init'] || subArgs.includes('--batch-init');
-    const configFlag = flags.config || subArgs.includes('--config');
-    if (batchInitFlag || configFlag) {
-        return handleBatchInit(subArgs, flags);
-    }
-    // Check if enhanced initialization is requested
-    const useEnhanced = subArgs.includes('--enhanced') || subArgs.includes('--safe');
-    if (useEnhanced) {
-        return enhancedInitCommand(subArgs, flags);
-    }
-    // Parse init options
-    const initForce = subArgs.includes('--force') || subArgs.includes('-f') || flags.force;
-    const initMinimal = subArgs.includes('--minimal') || subArgs.includes('-m') || flags.minimal;
-    const initSparc = subArgs.includes('--sparc') || subArgs.includes('-s') || flags.sparc;
-    const initDryRun = subArgs.includes('--dry-run') || subArgs.includes('-d') || flags.dryRun;
-    const initOptimized = initSparc && initForce; // Use optimized templates when both flags are present
-    const selectedModes = flags.modes ? flags.modes.split(',') : null; // Support selective mode initialization
-    // Get the actual working directory (where the command was run from)
-    // Use PWD environment variable which preserves the original directory
-    const workingDir = process.env.PWD || cwd();
-    console.log(`📁 Initializing in: ${workingDir}`);
-    // Change to the working directory to ensure all file operations happen there
-    try {
-        process.chdir(workingDir);
-    }
-    catch (err) {
-        printWarning(`Could not change to directory ${workingDir}: ${err.message}`);
-    }
-    try {
-        printSuccess('Initializing Claude Code integration files...');
-        // Check if files already exist in the working directory
-        const files = ['CLAUDE.md', 'memory-bank.md', 'coordination.md'];
-        const existingFiles = [];
-        for (const file of files) {
-            try {
-                await Deno.stat(`${workingDir}/${file}`);
-                existingFiles.push(file);
-            }
-            catch {
-                // File doesn't exist, which is what we want
-            }
-        }
-        if (existingFiles.length > 0 && !initForce) {
-            printWarning(`The following files already exist: ${existingFiles.join(', ')}`);
-            console.log('Use --force to overwrite existing files');
-            return;
-        }
-        // Create CLAUDE.md
-        const claudeMd = initOptimized ? await createOptimizedSparcClaudeMd() :
-            initSparc ? createSparcClaudeMd() :
-                initMinimal ? createMinimalClaudeMd() : createFullClaudeMd();
-        if (!initDryRun) {
-            await Deno.writeTextFile('CLAUDE.md', claudeMd);
-            console.log(`  ✓ Created CLAUDE.md${initOptimized ? ' (Batchtools-optimized SPARC)' : initSparc ? ' (SPARC-enhanced)' : ''}`);
-        }
-        else {
-            console.log(`  [DRY RUN] Would create CLAUDE.md${initOptimized ? ' (Batchtools-optimized SPARC)' : initSparc ? ' (SPARC-enhanced)' : ''}`);
-        }
-        // Create memory-bank.md
-        const memoryBankMd = initOptimized ? await createOptimizedMemoryBankMd() :
-            initMinimal ? createMinimalMemoryBankMd() : createFullMemoryBankMd();
-        if (!initDryRun) {
-            await Deno.writeTextFile('memory-bank.md', memoryBankMd);
-            console.log('  ✓ Created memory-bank.md' + (initOptimized ? ' (Optimized for parallel operations)' : ''));
-        }
-        else {
-            console.log('  [DRY RUN] Would create memory-bank.md' + (initOptimized ? ' (Optimized for parallel operations)' : ''));
-        }
-        // Create coordination.md
-        const coordinationMd = initOptimized ? await createOptimizedCoordinationMd() :
-            initMinimal ? createMinimalCoordinationMd() : createFullCoordinationMd();
-        if (!initDryRun) {
-            await Deno.writeTextFile('coordination.md', coordinationMd);
-            console.log('  ✓ Created coordination.md' + (initOptimized ? ' (Enhanced with batchtools)' : ''));
-        }
-        else {
-            console.log('  [DRY RUN] Would create coordination.md' + (initOptimized ? ' (Enhanced with batchtools)' : ''));
-        }
-        // Create directory structure
-        const directories = [
-            'memory',
-            'memory/agents',
-            'memory/sessions',
-            'coordination',
-            'coordination/memory_bank',
-            'coordination/subtasks',
-            'coordination/orchestration',
-            '.claude',
-            '.claude/commands',
-            '.claude/commands/sparc',
-            '.claude/commands/swarm',
-            '.claude/logs',
-            '.swarm' // Add .swarm directory for memory persistence (matching hive-mind pattern)
-        ];
-        for (const dir of directories) {
-            try {
-                if (!initDryRun) {
-                    await Deno.mkdir(dir, { recursive: true });
-                    console.log(`  ✓ Created ${dir}/ directory`);
-                }
-                else {
-                    console.log(`  [DRY RUN] Would create ${dir}/ directory`);
-                }
-            }
-            catch (err) {
-                if (err.code !== 'EEXIST') {
-                    throw err;
-                }
-            }
-        }
-        // Create SPARC command files if --sparc flag is used
-        if (initSparc && !initDryRun) {
-            try {
-                const sparcTargetDir = `${workingDir}/.claude/commands/sparc`;
-                // Get SPARC mode templates
-                const sparcTemplates = createSparcModeTemplates();
-                console.log('  📁 Creating SPARC command files...');
-                for (const [filename, content] of Object.entries(sparcTemplates)) {
-                    try {
-                        await Deno.writeTextFile(`${sparcTargetDir}/${filename}`, content);
-                        console.log(`    ✓ Created ${filename}`);
-                    }
-                    catch (err) {
-                        console.log(`    ⚠️  Could not create ${filename}: ${err.message}`);
-                    }
-                }
-                // Also create sparc-modes.md overview file
-                const sparcModesOverview = createSparcModesOverview();
-                await Deno.writeTextFile(`${sparcTargetDir}/sparc-modes.md`, sparcModesOverview);
-                console.log(`    ✓ Created sparc-modes.md`);
-                console.log('  ✅ SPARC command files created successfully');
-            }
-            catch (err) {
-                console.log(`  ⚠️  Could not create SPARC files: ${err.message}`);
-            }
-            // Also create swarm strategy files
-            try {
-                const swarmTargetDir = `${workingDir}/.claude/commands/swarm`;
-                // Get swarm strategy templates
-                const swarmTemplates = createSwarmStrategyTemplates();
-                console.log('  📁 Creating swarm strategy files...');
-                for (const [filename, content] of Object.entries(swarmTemplates)) {
-                    try {
-                        await Deno.writeTextFile(`${swarmTargetDir}/${filename}`, content);
-                        console.log(`    ✓ Created ${filename}`);
-                    }
-                    catch (err) {
-                        console.log(`    ⚠️  Could not create ${filename}: ${err.message}`);
-                    }
-                }
-                console.log('  ✅ Swarm strategy files created successfully');
-            }
-            catch (err) {
-                console.log(`  ⚠️  Could not create swarm files: ${err.message}`);
-            }
-            // Create .claude/config.json
-            try {
-                const configContent = {
-                    "version": "1.0",
-                    "sparc": {
-                        "enabled": true,
-                        "modes": ["orchestrator", "coder", "researcher", "tdd", "architect", "reviewer", "debugger", "tester", "analyzer", "optimizer", "documenter", "designer", "innovator", "swarm-coordinator", "memory-manager", "batch-executor", "workflow-manager"]
-                    },
-                    "swarm": {
-                        "enabled": true,
-                        "strategies": ["research", "development", "analysis", "testing", "optimization", "maintenance"]
-                    }
-                };
-                await Deno.writeTextFile(`${workingDir}/.claude/config.json`, JSON.stringify(configContent, null, 2));
-                console.log('  ✓ Created .claude/config.json');
-            }
-            catch (err) {
-                console.log(`  ⚠️  Could not create config.json: ${err.message}`);
-            }
-        }
-        // Create placeholder files for memory directories
-        const agentsReadme = createAgentsReadme();
-        if (!initDryRun) {
-            await Deno.writeTextFile('memory/agents/README.md', agentsReadme);
-            console.log('  ✓ Created memory/agents/README.md');
-        }
-        else {
-            console.log('  [DRY RUN] Would create memory/agents/README.md');
-        }
-        const sessionsReadme = createSessionsReadme();
-        if (!initDryRun) {
-            await Deno.writeTextFile('memory/sessions/README.md', sessionsReadme);
-            console.log('  ✓ Created memory/sessions/README.md');
-        }
-        else {
-            console.log('  [DRY RUN] Would create memory/sessions/README.md');
-        }
-        // Initialize persistence database
-        const initialData = {
-            agents: [],
-            tasks: [],
-            lastUpdated: Date.now()
-        };
-        if (!initDryRun) {
-            await Deno.writeTextFile('memory/claude-flow-data.json', JSON.stringify(initialData, null, 2));
-            console.log('  ✓ Created memory/claude-flow-data.json (persistence database)');
-        }
-        else {
-            console.log('  [DRY RUN] Would create memory/claude-flow-data.json (persistence database)');
-        }
-        // Create local claude-flow executable wrapper
-        if (!initDryRun) {
-            await createLocalExecutable(workingDir);
-        }
-        else {
-            console.log('  [DRY RUN] Would create local claude-flow executable wrapper');
-        }
-        // SPARC initialization
-        if (initSparc) {
-            console.log('\n🚀 Initializing SPARC development environment...');
-            if (initDryRun) {
-                console.log('  [DRY RUN] Would run: npx -y create-sparc init --force');
-                console.log('  [DRY RUN] Would create SPARC environment with all modes');
-                console.log('  [DRY RUN] Would create Claude slash commands' + (initOptimized ? ' (Batchtools-optimized)' : ''));
-                if (selectedModes) {
-                    console.log(`  [DRY RUN] Would create commands for selected modes: ${selectedModes.join(', ')}`);
-                }
-            }
-            else {
-                // Check if create-sparc exists and run it
-                let sparcInitialized = false;
-                try {
-                    const createSparcCommand = new Deno.Command('npx', {
-                        args: ['-y', 'create-sparc', 'init', '--force'],
-                        cwd: workingDir, // Use the original working directory
-                        stdout: 'inherit',
-                        stderr: 'inherit',
-                        env: {
-                            ...Deno.env.toObject(),
-                            PWD: workingDir, // Ensure PWD is set correctly
-                        },
-                    });
-                    console.log('  🔄 Running: npx -y create-sparc init --force');
-                    const createSparcResult = await createSparcCommand.output();
-                    if (createSparcResult.success) {
-                        console.log('  ✅ SPARC environment initialized successfully');
-                        sparcInitialized = true;
-                    }
-                    else {
-                        printWarning('create-sparc failed, creating basic SPARC structure manually...');
-                        // Fallback: create basic SPARC structure manually
-                        await createSparcStructureManually();
-                        sparcInitialized = true; // Manual creation still counts as initialized
-                    }
-                }
-                catch (err) {
-                    printWarning('create-sparc not available, creating basic SPARC structure manually...');
-                    // Fallback: create basic SPARC structure manually
-                    await createSparcStructureManually();
-                    sparcInitialized = true; // Manual creation still counts as initialized
-                }
-                // Always create Claude slash commands after SPARC initialization
-                if (sparcInitialized) {
-                    try {
-                        if (initOptimized) {
-                            await createOptimizedClaudeSlashCommands(workingDir, selectedModes);
-                        }
-                        else {
-                            await createClaudeSlashCommands(workingDir);
-                        }
-                    }
-                    catch (err) {
-                        printWarning(`Could not create Claude Code slash commands: ${err.message}`);
-                    }
-                }
-            }
-        }
-        if (initDryRun) {
-            printSuccess('🔍 Dry run completed! Here\'s what would be created:');
-            console.log('\n📋 Summary of planned initialization:');
-            console.log(`  • Configuration: ${initOptimized ? 'Batchtools-optimized SPARC' : initSparc ? 'SPARC-enhanced' : 'Standard'}`);
-            console.log(`  • Template type: ${initOptimized ? 'Optimized for parallel processing' : 'Standard'}`);
-            console.log('  • Core files: CLAUDE.md, memory-bank.md, coordination.md');
-            console.log('  • Directory structure: memory/, coordination/, .claude/');
-            console.log('  • Local executable: ./claude-flow');
-            if (initSparc) {
-                console.log(`  • Claude Code slash commands: ${selectedModes ? selectedModes.length : 'All'} SPARC mode commands`);
-                console.log('  • SPARC environment with all development modes');
-            }
-            if (initOptimized) {
-                console.log('  • Batchtools optimization: Enabled for parallel processing');
-                console.log('  • Performance enhancements: Smart batching, concurrent operations');
-            }
-            console.log('\n🚀 To proceed with initialization, run the same command without --dry-run');
-        }
-        else {
-            printSuccess('🎉 Claude Code integration files initialized successfully!');
-            if (initOptimized) {
-                console.log('\n⚡ Batchtools Optimization Enabled!');
-                console.log('  • Parallel processing capabilities activated');
-                console.log('  • Performance improvements: 250-500% faster operations');
-                console.log('  • Smart batching and concurrent operations available');
-            }
-            console.log('\n📋 What was created:');
-            console.log(`  ✅ CLAUDE.md (${initOptimized ? 'Batchtools-optimized' : initSparc ? 'SPARC-enhanced' : 'Standard configuration'})`);
-            console.log(`  ✅ memory-bank.md (${initOptimized ? 'With parallel processing' : 'Standard memory system'})`);
-            console.log(`  ✅ coordination.md (${initOptimized ? 'Enhanced with batchtools' : 'Standard coordination'})`);
-            console.log('  ✅ Directory structure with memory/ and coordination/');
-            console.log('  ✅ Local executable at ./claude-flow');
-            console.log('  ✅ Persistence database at memory/claude-flow-data.json');
-            if (initSparc) {
-                const modeCount = selectedModes ? selectedModes.length : '20+';
-                console.log(`  ✅ Claude Code slash commands (${modeCount} SPARC modes)`);
-                console.log('  ✅ Complete SPARC development environment');
-            }
-            console.log('\n🚀 Next steps:');
-            console.log('1. Review and customize the generated files for your project');
-            console.log('2. Run \'./claude-flow start\' to begin the orchestration system');
-            console.log('3. Use \'./claude-flow\' instead of \'npx claude-flow\' for all commands');
-            console.log('4. Use \'claude --dangerously-skip-permissions\' for unattended operation');
-            if (initSparc) {
-                console.log('5. Use Claude Code slash commands: /sparc, /sparc-architect, /sparc-tdd, etc.');
-                console.log('6. Explore SPARC modes with \'./claude-flow sparc modes\'');
-                console.log('7. Try TDD workflow with \'./claude-flow sparc tdd "your task"\'');
-                if (initOptimized) {
-                    console.log('8. Use batchtools commands: /batchtools, /performance for optimization');
-                    console.log('9. Enable parallel processing with --parallel flags');
-                    console.log('10. Monitor performance with \'./claude-flow performance monitor\'');
-                }
-            }
-            console.log('\n💡 Tips:');
-            console.log('  • Type \'/\' in Claude Code to see all available slash commands');
-            console.log('  • Use \'./claude-flow status\' to check system health');
-            console.log('  • Store important context with \'./claude-flow memory store\'');
-            if (initOptimized) {
-                console.log('  • Use --parallel flags for concurrent operations');
-                console.log('  • Enable batch processing for multiple related tasks');
-                console.log('  • Monitor performance with real-time metrics');
-            }
-            // Check for Claude Code and set up MCP servers (always enabled by default)
-            if (!initDryRun && isClaudeCodeInstalled()) {
-                console.log('\n🔍 Claude Code CLI detected!');
-                const skipMcp = subArgs && subArgs.includes && subArgs.includes('--skip-mcp');
-                if (!skipMcp) {
-                    await setupMcpServers(initDryRun);
-                }
-                else {
-                    console.log('  ℹ️  Skipping MCP setup (--skip-mcp flag used)');
-                }
-            }
-            else if (!initDryRun && !isClaudeCodeInstalled()) {
-                console.log('\n⚠️  Claude Code CLI not detected!');
-                console.log('  📥 Install with: npm install -g @anthropic-ai/claude-code');
-                console.log('  📋 Then add MCP servers manually with:');
-                console.log('     claude mcp add claude-flow claude-flow mcp start');
-                console.log('     claude mcp add ruv-swarm npx ruv-swarm mcp start');
-            }
-        }
-    }
-    catch (err) {
-        printError(`Failed to initialize files: ${err.message}`);
-    }
-}
-// Handle batch initialization
-async function handleBatchInit(subArgs, flags) {
-    try {
-        // Options parsing from flags and subArgs
-        const options = {
-            parallel: !flags['no-parallel'] && flags.parallel !== false,
-            sparc: flags.sparc || flags.s,
-            minimal: flags.minimal || flags.m,
-            force: flags.force || flags.f,
-            maxConcurrency: flags['max-concurrent'] || 5,
-            progressTracking: true,
-            template: flags.template,
-            environments: flags.environments ? flags.environments.split(',').map(env => env.trim()) : ['dev']
-        };
-        // Validate options
-        const validationErrors = validateBatchOptions(options);
-        if (validationErrors.length > 0) {
-            printError('Batch options validation failed:');
-            validationErrors.forEach(error => console.error(`  - ${error}`));
-            return;
-        }
-        // Config file mode
-        if (flags.config) {
-            const configFile = flags.config;
-            printSuccess(`Loading batch configuration from: ${configFile}`);
-            const results = await batchInitFromConfig(configFile, options);
-            if (results) {
-                printSuccess('Batch initialization from config completed');
-            }
-            return;
-        }
-        // Batch init mode  
-        if (flags['batch-init']) {
-            const projectsString = flags['batch-init'];
-            const projects = projectsString.split(',').map(project => project.trim());
-            if (projects.length === 0) {
-                printError('No projects specified for batch initialization');
-                return;
-            }
-            printSuccess(`Initializing ${projects.length} projects in batch mode`);
-            const results = await batchInitCommand(projects, options);
-            if (results) {
-                const successful = results.filter(r => r.success).length;
-                const failed = results.filter(r => !r.success).length;
-                if (failed === 0) {
-                    printSuccess(`All ${successful} projects initialized successfully`);
-                }
-                else {
-                    printWarning(`${successful} projects succeeded, ${failed} failed`);
-                }
-            }
-            return;
-        }
-        printError('No batch operation specified. Use --batch-init <projects> or --config <file>');
-    }
-    catch (err) {
-        printError(`Batch initialization failed: ${err.message}`);
-    }
-}
-/**
- * Enhanced initialization command with validation and rollback
- */
-async function enhancedInitCommand(subArgs, flags) {
-    console.log('🛡️  Starting enhanced initialization with validation and rollback...');
-    // Store parameters to avoid scope issues in async context
-    const args = subArgs || [];
-    const options = flags || {};
-    // Get the working directory
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    // Initialize systems
-    const rollbackSystem = new RollbackSystem(workingDir);
-    const validationSystem = new ValidationSystem(workingDir);
-    let atomicOp = null;
-    try {
-        // Parse options
-        const initOptions = {
-            force: args.includes('--force') || args.includes('-f') || options.force,
-            minimal: args.includes('--minimal') || args.includes('-m') || options.minimal,
-            sparc: args.includes('--sparc') || args.includes('-s') || options.sparc,
-            skipPreValidation: args.includes('--skip-pre-validation'),
-            skipBackup: args.includes('--skip-backup'),
-            validateOnly: args.includes('--validate-only')
-        };
-        // Phase 1: Pre-initialization validation
-        if (!initOptions.skipPreValidation) {
-            console.log('\n🔍 Phase 1: Pre-initialization validation...');
-            const preValidation = await validationSystem.validatePreInit(initOptions);
-            if (!preValidation.success) {
-                printError('Pre-initialization validation failed:');
-                preValidation.errors.forEach(error => console.error(`  ❌ ${error}`));
-                return;
-            }
-            if (preValidation.warnings.length > 0) {
-                printWarning('Pre-initialization warnings:');
-                preValidation.warnings.forEach(warning => console.warn(`  ⚠️  ${warning}`));
-            }
-            printSuccess('Pre-initialization validation passed');
-        }
-        // Stop here if validation-only mode
-        if (options.validateOnly) {
-            console.log('\n✅ Validation-only mode completed');
-            return;
-        }
-        // Phase 2: Create backup
-        if (!options.skipBackup) {
-            console.log('\n💾 Phase 2: Creating backup...');
-            const backupResult = await rollbackSystem.createPreInitBackup();
-            if (!backupResult.success) {
-                printError('Backup creation failed:');
-                backupResult.errors.forEach(error => console.error(`  ❌ ${error}`));
-                return;
-            }
-        }
-        // Phase 3: Initialize with atomic operations
-        console.log('\n🔧 Phase 3: Atomic initialization...');
-        atomicOp = createAtomicOperation(rollbackSystem, 'enhanced-init');
-        const atomicBegin = await atomicOp.begin();
-        if (!atomicBegin) {
-            printError('Failed to begin atomic operation');
-            return;
-        }
-        // Perform initialization steps with checkpoints
-        await performInitializationWithCheckpoints(rollbackSystem, options, workingDir, dryRun);
-        // Phase 4: Post-initialization validation
-        console.log('\n✅ Phase 4: Post-initialization validation...');
-        const postValidation = await validationSystem.validatePostInit();
-        if (!postValidation.success) {
-            printError('Post-initialization validation failed:');
-            postValidation.errors.forEach(error => console.error(`  ❌ ${error}`));
-            // Attempt automatic rollback
-            console.log('\n🔄 Attempting automatic rollback...');
-            await atomicOp.rollback();
-            printWarning('Initialization rolled back due to validation failure');
-            return;
-        }
-        // Phase 5: Configuration validation
-        console.log('\n🔧 Phase 5: Configuration validation...');
-        const configValidation = await validationSystem.validateConfiguration();
-        if (configValidation.warnings.length > 0) {
-            printWarning('Configuration warnings:');
-            configValidation.warnings.forEach(warning => console.warn(`  ⚠️  ${warning}`));
-        }
-        // Phase 6: Health checks
-        console.log('\n🏥 Phase 6: System health checks...');
-        const healthChecks = await validationSystem.runHealthChecks();
-        if (healthChecks.warnings.length > 0) {
-            printWarning('Health check warnings:');
-            healthChecks.warnings.forEach(warning => console.warn(`  ⚠️  ${warning}`));
-        }
-        // Commit atomic operation
-        await atomicOp.commit();
-        // Generate and display validation report
-        const fullValidation = await runFullValidation(workingDir, {
-            postInit: true,
-            skipPreInit: options.skipPreValidation
-        });
-        console.log('\n📊 Validation Report:');
-        console.log(fullValidation.report);
-        printSuccess('🎉 Enhanced initialization completed successfully!');
-        console.log('\n✨ Your SPARC environment is fully validated and ready to use');
-    }
-    catch (error) {
-        printError(`Enhanced initialization failed: ${error.message}`);
-        // Attempt rollback if atomic operation is active
-        if (atomicOp && !atomicOp.completed) {
-            console.log('\n🔄 Performing emergency rollback...');
-            try {
-                await atomicOp.rollback();
-                printWarning('Emergency rollback completed');
-            }
-            catch (rollbackError) {
-                printError(`Rollback also failed: ${rollbackError.message}`);
-            }
-        }
-    }
-}
-/**
- * Handle validation commands
- */
-async function handleValidationCommand(subArgs, flags) {
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    console.log('🔍 Running validation checks...');
-    const options = {
-        skipPreInit: subArgs.includes('--skip-pre-init'),
-        skipConfig: subArgs.includes('--skip-config'),
-        skipModeTest: subArgs.includes('--skip-mode-test'),
-        postInit: !subArgs.includes('--pre-init-only')
-    };
-    try {
-        const validationResults = await runFullValidation(workingDir, options);
-        console.log('\n📊 Validation Results:');
-        console.log(validationResults.report);
-        if (validationResults.success) {
-            printSuccess('✅ All validation checks passed');
-        }
-        else {
-            printError('❌ Some validation checks failed');
-            process.exit(1);
-        }
-    }
-    catch (error) {
-        printError(`Validation failed: ${error.message}`);
-        process.exit(1);
-    }
-}
-/**
- * Handle rollback commands
- */
-async function handleRollbackCommand(subArgs, flags) {
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    const rollbackSystem = new RollbackSystem(workingDir);
-    try {
-        // Check for specific rollback options
-        if (subArgs.includes('--full')) {
-            console.log('🔄 Performing full rollback...');
-            const result = await rollbackSystem.performFullRollback();
-            if (result.success) {
-                printSuccess('Full rollback completed successfully');
-            }
-            else {
-                printError('Full rollback failed:');
-                result.errors.forEach(error => console.error(`  ❌ ${error}`));
-            }
-        }
-        else if (subArgs.includes('--partial')) {
-            const phaseIndex = subArgs.findIndex(arg => arg === '--phase');
-            if (phaseIndex !== -1 && subArgs[phaseIndex + 1]) {
-                const phase = subArgs[phaseIndex + 1];
-                console.log(`🔄 Performing partial rollback for phase: ${phase}`);
-                const result = await rollbackSystem.performPartialRollback(phase);
-                if (result.success) {
-                    printSuccess(`Partial rollback completed for phase: ${phase}`);
-                }
-                else {
-                    printError(`Partial rollback failed for phase: ${phase}`);
-                    result.errors.forEach(error => console.error(`  ❌ ${error}`));
-                }
-            }
-            else {
-                printError('Partial rollback requires --phase <phase-name>');
-            }
-        }
-        else {
-            // Interactive rollback point selection
-            const rollbackPoints = await rollbackSystem.listRollbackPoints();
-            if (rollbackPoints.rollbackPoints.length === 0) {
-                printWarning('No rollback points available');
-                return;
-            }
-            console.log('\n📋 Available rollback points:');
-            rollbackPoints.rollbackPoints.forEach((point, index) => {
-                const date = new Date(point.timestamp).toLocaleString();
-                console.log(`  ${index + 1}. ${point.type} - ${date}`);
-            });
-            // For now, rollback to the most recent point
-            const latest = rollbackPoints.rollbackPoints[0];
-            if (latest) {
-                console.log(`\n🔄 Rolling back to: ${latest.type} (${new Date(latest.timestamp).toLocaleString()})`);
-                const result = await rollbackSystem.performFullRollback(latest.backupId);
-                if (result.success) {
-                    printSuccess('Rollback completed successfully');
-                }
-                else {
-                    printError('Rollback failed');
-                }
-            }
-        }
-    }
-    catch (error) {
-        printError(`Rollback operation failed: ${error.message}`);
-    }
-}
-/**
- * Handle list backups command
- */
-async function handleListBackups(subArgs, flags) {
-    const workingDir = Deno.env.get('PWD') || Deno.cwd();
-    const rollbackSystem = new RollbackSystem(workingDir);
-    try {
-        const rollbackPoints = await rollbackSystem.listRollbackPoints();
-        console.log('\n📋 Rollback Points and Backups:');
-        if (rollbackPoints.rollbackPoints.length === 0) {
-            console.log('  No rollback points available');
-        }
-        else {
-            console.log('\n🔄 Rollback Points:');
-            rollbackPoints.rollbackPoints.forEach((point, index) => {
-                const date = new Date(point.timestamp).toLocaleString();
-                console.log(`  ${index + 1}. ${point.type} - ${date} (${point.backupId || 'No backup'})`);
-            });
-        }
-        if (rollbackPoints.checkpoints.length > 0) {
-            console.log('\n📍 Checkpoints:');
-            rollbackPoints.checkpoints.slice(-5).forEach((checkpoint, index) => {
-                const date = new Date(checkpoint.timestamp).toLocaleString();
-                console.log(`  ${index + 1}. ${checkpoint.phase} - ${date} (${checkpoint.status})`);
-            });
-        }
-    }
-    catch (error) {
-        printError(`Failed to list backups: ${error.message}`);
-    }
-}
-/**
- * Perform initialization with checkpoints
- */
-async function performInitializationWithCheckpoints(rollbackSystem, options, workingDir, dryRun = false) {
-    const phases = [
-        { name: 'file-creation', action: () => createInitialFiles(options, workingDir, dryRun) },
-        { name: 'directory-structure', action: () => createDirectoryStructure(workingDir, dryRun) },
-        { name: 'memory-setup', action: () => setupMemorySystem(workingDir, dryRun) },
-        { name: 'coordination-setup', action: () => setupCoordinationSystem(workingDir, dryRun) },
-        { name: 'executable-creation', action: () => createLocalExecutable(workingDir, dryRun) }
-    ];
-    if (options.sparc) {
-        phases.push({ name: 'sparc-init', action: () => createSparcStructureManually() }, { name: 'claude-commands', action: () => createClaudeSlashCommands(workingDir) });
-    }
-    for (const phase of phases) {
-        console.log(`  🔧 ${phase.name}...`);
-        // Create checkpoint before phase
-        await rollbackSystem.createCheckpoint(phase.name, {
-            timestamp: Date.now(),
-            phase: phase.name
-        });
-        try {
-            await phase.action();
-            console.log(`  ✅ ${phase.name} completed`);
-        }
-        catch (error) {
-            console.error(`  ❌ ${phase.name} failed: ${error.message}`);
-            throw error;
-        }
-    }
-}
-// Helper functions for atomic initialization
-async function createInitialFiles(options, workingDir, dryRun = false) {
-    if (!dryRun) {
-        const claudeMd = options.sparc ? createSparcClaudeMd() :
-            options.minimal ? createMinimalClaudeMd() : createFullClaudeMd();
-        await Deno.writeTextFile(`${workingDir}/CLAUDE.md`, claudeMd);
-        const memoryBankMd = options.minimal ? createMinimalMemoryBankMd() : createFullMemoryBankMd();
-        await Deno.writeTextFile(`${workingDir}/memory-bank.md`, memoryBankMd);
-        const coordinationMd = options.minimal ? createMinimalCoordinationMd() : createFullCoordinationMd();
-        await Deno.writeTextFile(`${workingDir}/coordination.md`, coordinationMd);
-    }
-}
-async function createDirectoryStructure(workingDir, dryRun = false) {
-    const directories = [
-        'memory', 'memory/agents', 'memory/sessions',
-        'coordination', 'coordination/memory_bank', 'coordination/subtasks', 'coordination/orchestration',
-        '.claude', '.claude/commands', '.claude/logs'
-    ];
-    if (!dryRun) {
-        for (const dir of directories) {
-            await Deno.mkdir(`${workingDir}/${dir}`, { recursive: true });
-        }
-    }
-}
-async function setupMemorySystem(workingDir, dryRun = false) {
-    if (!dryRun) {
-        const initialData = { agents: [], tasks: [], lastUpdated: Date.now() };
-        await Deno.writeTextFile(`${workingDir}/memory/claude-flow-data.json`, JSON.stringify(initialData, null, 2));
-        await Deno.writeTextFile(`${workingDir}/memory/agents/README.md`, createAgentsReadme());
-        await Deno.writeTextFile(`${workingDir}/memory/sessions/README.md`, createSessionsReadme());
-    }
-}
-async function setupCoordinationSystem(workingDir, dryRun = false) {
-    // Coordination system is already set up by createDirectoryStructure
-    // This is a placeholder for future coordination setup logic
-}
-/**
- * Enhanced Claude Flow v2.0.0 initialization
- */
-async function enhancedClaudeFlowInit(flags, subArgs = []) {
-    console.log('🚀 Initializing Claude Flow v2.0.0 with enhanced features...');
-    const workingDir = process.cwd();
-    const force = flags.force || flags.f;
-    const dryRun = flags.dryRun || flags['dry-run'] || flags.d;
-    // Store parameters to avoid scope issues in async context
-    const args = subArgs || [];
-    const options = flags || {};
-    // Import fs module for Node.js
-    const fs = await import('fs/promises');
-    const { chmod } = fs;
-    try {
-        // Check existing files
-        const existingFiles = [];
-        const filesToCheck = ['CLAUDE.md', '.claude/settings.json'];
-        for (const file of filesToCheck) {
-            if (existsSync(`${workingDir}/${file}`)) {
-                existingFiles.push(file);
-            }
-        }
-        if (existingFiles.length > 0 && !force) {
-            printWarning(`The following files already exist: ${existingFiles.join(', ')}`);
-            console.log('Use --force to overwrite existing files');
-            return;
-        }
-        // Create CLAUDE.md
-        if (!dryRun) {
-            await Deno.writeTextFile(`${workingDir}/CLAUDE.md`, createEnhancedClaudeMd());
-            printSuccess('✓ Created CLAUDE.md (Claude Flow v2.0.0)');
-        }
-        else {
-            console.log('[DRY RUN] Would create CLAUDE.md (Claude Flow v2.0.0)');
-        }
-        // Create .claude directory structure
-        const claudeDir = `${workingDir}/.claude`;
-        if (!dryRun) {
-            await Deno.mkdir(claudeDir, { recursive: true });
-            await Deno.mkdir(`${claudeDir}/commands`, { recursive: true });
-            await Deno.mkdir(`${claudeDir}/helpers`, { recursive: true });
-            printSuccess('✓ Created .claude directory structure');
-        }
-        else {
-            console.log('[DRY RUN] Would create .claude directory structure');
-        }
-        // Create settings.json
-        if (!dryRun) {
-            await Deno.writeTextFile(`${claudeDir}/settings.json`, createEnhancedSettingsJson());
-            printSuccess('✓ Created .claude/settings.json with hooks and MCP configuration');
-        }
-        else {
-            console.log('[DRY RUN] Would create .claude/settings.json');
-        }
-        // Create settings.local.json with default MCP permissions
-        const settingsLocal = {
-            "permissions": {
-                "allow": [
-                    "mcp__ruv-swarm",
-                    "mcp__claude-flow"
-                ],
-                "deny": []
-            }
-        };
-        if (!dryRun) {
-            await Deno.writeTextFile(`${claudeDir}/settings.local.json`, JSON.stringify(settingsLocal, null, 2));
-            printSuccess('✓ Created .claude/settings.local.json with default MCP permissions');
-        }
-        else {
-            console.log('[DRY RUN] Would create .claude/settings.local.json with default MCP permissions');
-        }
-        // Create command documentation
-        for (const [category, commands] of Object.entries(COMMAND_STRUCTURE)) {
-            const categoryDir = `${claudeDir}/commands/${category}`;
-            if (!dryRun) {
-                await Deno.mkdir(categoryDir, { recursive: true });
-                // Create category README
-                const categoryReadme = `# ${category.charAt(0).toUpperCase() + category.slice(1)} Commands
-
-Commands for ${category} operations in Claude Flow.
-
-## Available Commands
-
-${commands.map(cmd => `- [${cmd}](./${cmd}.md)`).join('\n')}
-`;
-                await Deno.writeTextFile(`${categoryDir}/README.md`, categoryReadme);
-                // Create individual command docs
-                for (const command of commands) {
-                    const doc = createCommandDoc(category, command);
-                    if (doc) {
-                        await Deno.writeTextFile(`${categoryDir}/${command}.md`, doc);
-                    }
-                }
-                console.log(`  ✓ Created ${commands.length} ${category} command docs`);
-            }
-            else {
-                console.log(`[DRY RUN] Would create ${commands.length} ${category} command docs`);
-            }
-        }
-        // Create wrapper scripts
-        if (!dryRun) {
-            // Unix wrapper - now uses universal ES module compatible wrapper
-            const unixWrapper = createWrapperScript('unix');
-            await Deno.writeTextFile(`${workingDir}/claude-flow`, unixWrapper);
-            await fs.chmod(`${workingDir}/claude-flow`, 0o755);
-            // Windows wrapper
-            await Deno.writeTextFile(`${workingDir}/claude-flow.bat`, createWrapperScript('windows'));
-            // PowerShell wrapper
-            await Deno.writeTextFile(`${workingDir}/claude-flow.ps1`, createWrapperScript('powershell'));
-            printSuccess('✓ Created platform-specific wrapper scripts');
-        }
-        else {
-            console.log('[DRY RUN] Would create wrapper scripts');
-        }
-        // Create helper scripts
-        const helpers = ['setup-mcp.sh', 'quick-start.sh', 'github-setup.sh'];
-        for (const helper of helpers) {
-            if (!dryRun) {
-                const content = createHelperScript(helper);
-                if (content) {
-                    await Deno.writeTextFile(`${claudeDir}/helpers/${helper}`, content);
-                    await fs.chmod(`${claudeDir}/helpers/${helper}`, 0o755);
-                }
-            }
-        }
-        if (!dryRun) {
-            printSuccess(`✓ Created ${helpers.length} helper scripts`);
-        }
-        else {
-            console.log(`[DRY RUN] Would create ${helpers.length} helper scripts`);
-        }
-        // Create standard directories from original init
-        const standardDirs = [
-            'memory',
-            'memory/agents',
-            'memory/sessions',
-            'coordination',
-            'coordination/memory_bank',
-            'coordination/subtasks',
-            'coordination/orchestration',
-            '.swarm' // Add .swarm directory for shared memory
-        ];
-        for (const dir of standardDirs) {
-            if (!dryRun) {
-                await fs.mkdir(`${workingDir}/${dir}`, { recursive: true });
-            }
-        }
-        if (!dryRun) {
-            printSuccess('✓ Created standard directory structure');
-            // Initialize memory system
-            const initialData = { agents: [], tasks: [], lastUpdated: Date.now() };
-            await fs.writeFile(`${workingDir}/memory/claude-flow-data.json`, JSON.stringify(initialData, null, 2));
-            // Create README files
-            await fs.writeFile(`${workingDir}/memory/agents/README.md`, createAgentsReadme());
-            await fs.writeFile(`${workingDir}/memory/sessions/README.md`, createSessionsReadme());
-            printSuccess('✓ Initialized memory system');
-            // Initialize memory database
-            try {
-                // Import and initialize SqliteMemoryStore to create the database
-                const { SqliteMemoryStore } = await import('../../../memory/sqlite-store.js');
-                const memoryStore = new SqliteMemoryStore();
-                await memoryStore.initialize();
-                memoryStore.close();
-                printSuccess('✓ Initialized memory database (.swarm/memory.db)');
-            }
-            catch (err) {
-                console.log(`  ⚠️  Could not initialize memory database: ${err.message}`);
-                console.log('     The database will be created on first use');
-            }
-        }
-        // Check for Claude Code and set up MCP servers (always enabled by default)
-        if (!dryRun && isClaudeCodeInstalled()) {
-            console.log('\n🔍 Claude Code CLI detected!');
-            const skipMcp = (options && options['skip-mcp']) || (subArgs && subArgs.includes && subArgs.includes('--skip-mcp'));
-            if (!skipMcp) {
-                await setupMcpServers(dryRun);
-            }
-            else {
-                console.log('  ℹ️  Skipping MCP setup (--skip-mcp flag used)');
-                console.log('\n  📋 To add MCP servers manually:');
-                console.log('     claude mcp add claude-flow claude-flow mcp start');
-                console.log('     claude mcp add ruv-swarm npx ruv-swarm mcp start');
-            }
-        }
-        else if (!dryRun && !isClaudeCodeInstalled()) {
-            console.log('\n⚠️  Claude Code CLI not detected!');
-            console.log('\n  📥 To install Claude Code:');
-            console.log('     npm install -g @anthropic-ai/claude-code');
-            console.log('\n  📋 After installing, add MCP servers:');
-            console.log('     claude mcp add claude-flow claude-flow mcp start');
-            console.log('     claude mcp add ruv-swarm npx ruv-swarm mcp start');
-        }
-        // Final instructions
-        console.log('\n🎉 Claude Flow v2.0.0 initialization complete!');
-        console.log('\n📚 Quick Start:');
-        if (isClaudeCodeInstalled()) {
-            console.log('1. View available commands: ls .claude/commands/');
-            console.log('2. Start a swarm: npx claude-flow swarm init');
-            console.log('3. Use MCP tools in Claude Code for enhanced coordination');
-        }
-        else {
-            console.log('1. Install Claude Code: npm install -g @anthropic-ai/claude-code');
-            console.log('2. Add MCP servers (see instructions above)');
-            console.log('3. View available commands: ls .claude/commands/');
-            console.log('4. Start a swarm: npx claude-flow swarm init');
-        }
-        console.log('\n💡 Tips:');
-        console.log('• Check .claude/commands/ for detailed documentation');
-        console.log('• Use --help with any command for options');
-        console.log('• Enable GitHub integration with .claude/helpers/github-setup.sh');
-    }
-    catch (err) {
-        printError(`Failed to initialize Claude Flow v2.0.0: ${err.message}`);
-    }
-}
-//# sourceMappingURL=index.js.map