claude-flow 2.0.0-alpha.28 → 2.0.0-alpha.3

package/.claude/commands/analysis/README.md

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+# Analysis Commands
+
+Commands for analysis operations in Claude Flow.
+
+## Available Commands
+
+- [bottleneck-detect](./bottleneck-detect.md)
+- [token-usage](./token-usage.md)
+- [performance-report](./performance-report.md)

package/.claude/commands/analysis/bottleneck-detect.md

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+# bottleneck detect
+
+Analyze performance bottlenecks in swarm operations and suggest optimizations.
+
+## Usage
+
+```bash
+npx claude-flow bottleneck detect [options]
+```
+
+## Options
+
+- `--swarm-id, -s <id>` - Analyze specific swarm (default: current)
+- `--time-range, -t <range>` - Analysis period: 1h, 24h, 7d, all (default: 1h)
+- `--threshold <percent>` - Bottleneck threshold percentage (default: 20)
+- `--export, -e <file>` - Export analysis to file
+- `--fix` - Apply automatic optimizations
+
+## Examples
+
+### Basic bottleneck detection
+```bash
+npx claude-flow bottleneck detect
+```
+
+### Analyze specific swarm
+```bash
+npx claude-flow bottleneck detect --swarm-id swarm-123
+```
+
+### Last 24 hours with export
+```bash
+npx claude-flow bottleneck detect -t 24h -e bottlenecks.json
+```
+
+### Auto-fix detected issues
+```bash
+npx claude-flow bottleneck detect --fix --threshold 15
+```
+
+## Metrics Analyzed
+
+### Communication Bottlenecks
+- Message queue delays
+- Agent response times
+- Coordination overhead
+- Memory access patterns
+
+### Processing Bottlenecks
+- Task completion times
+- Agent utilization rates
+- Parallel execution efficiency
+- Resource contention
+
+### Memory Bottlenecks
+- Cache hit rates
+- Memory access patterns
+- Storage I/O performance
+- Neural pattern loading
+
+### Network Bottlenecks
+- API call latency
+- MCP communication delays
+- External service timeouts
+- Concurrent request limits
+
+## Output Format
+
+```
+🔍 Bottleneck Analysis Report
+━━━━━━━━━━━━━━━━━━━━━━━━━━━
+
+📊 Summary
+├── Time Range: Last 1 hour
+├── Agents Analyzed: 6
+├── Tasks Processed: 42
+└── Critical Issues: 2
+
+🚨 Critical Bottlenecks
+1. Agent Communication (35% impact)
+   └── coordinator → coder-1 messages delayed by 2.3s avg
+   
+2. Memory Access (28% impact)
+   └── Neural pattern loading taking 1.8s per access
+
+⚠️ Warning Bottlenecks
+1. Task Queue (18% impact)
+   └── 5 tasks waiting > 10s for assignment
+
+💡 Recommendations
+1. Switch to hierarchical topology (est. 40% improvement)
+2. Enable memory caching (est. 25% improvement)
+3. Increase agent concurrency to 8 (est. 20% improvement)
+
+✅ Quick Fixes Available
+Run with --fix to apply:
+- Enable smart caching
+- Optimize message routing
+- Adjust agent priorities
+```
+
+## Automatic Fixes
+
+When using `--fix`, the following optimizations may be applied:
+
+1. **Topology Optimization**
+   - Switch to more efficient topology
+   - Adjust communication patterns
+   - Reduce coordination overhead
+
+2. **Caching Enhancement**
+   - Enable memory caching
+   - Optimize cache strategies
+   - Preload common patterns
+
+3. **Concurrency Tuning**
+   - Adjust agent counts
+   - Optimize parallel execution
+   - Balance workload distribution
+
+4. **Priority Adjustment**
+   - Reorder task queues
+   - Prioritize critical paths
+   - Reduce wait times
+
+## Performance Impact
+
+Typical improvements after bottleneck resolution:
+- **Communication**: 30-50% faster message delivery
+- **Processing**: 20-40% reduced task completion time
+- **Memory**: 40-60% fewer cache misses
+- **Overall**: 25-45% performance improvement
+
+## Integration with Claude Code
+
+```javascript
+// Check for bottlenecks in Claude Code
+mcp__claude-flow__bottleneck_detect { 
+  timeRange: "1h",
+  threshold: 20,
+  autoFix: false
+}
+```
+
+## See Also
+
+- `performance report` - Detailed performance analysis
+- `token usage` - Token optimization analysis
+- `swarm monitor` - Real-time monitoring
+- `cache manage` - Cache optimization

package/.claude/commands/analysis/performance-report.md

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+# performance-report
+
+Generate comprehensive performance reports for swarm operations.
+
+## Usage
+```bash
+npx claude-flow analysis performance-report [options]
+```
+
+## Options
+- `--format <type>` - Report format (json, html, markdown)
+- `--include-metrics` - Include detailed metrics
+- `--compare <id>` - Compare with previous swarm
+
+## Examples
+```bash
+# Generate HTML report
+npx claude-flow analysis performance-report --format html
+
+# Compare swarms
+npx claude-flow analysis performance-report --compare swarm-123
+
+# Full metrics report
+npx claude-flow analysis performance-report --include-metrics --format markdown
+```

package/.claude/commands/analysis/token-usage.md

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+# token-usage
+
+Analyze token usage patterns and optimize for efficiency.
+
+## Usage
+```bash
+npx claude-flow analysis token-usage [options]
+```
+
+## Options
+- `--period <time>` - Analysis period (1h, 24h, 7d, 30d)
+- `--by-agent` - Break down by agent
+- `--by-operation` - Break down by operation type
+
+## Examples
+```bash
+# Last 24 hours token usage
+npx claude-flow analysis token-usage --period 24h
+
+# By agent breakdown
+npx claude-flow analysis token-usage --by-agent
+
+# Export detailed report
+npx claude-flow analysis token-usage --period 7d --export tokens.csv
+```

package/.claude/commands/automation/README.md

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+# Automation Commands
+
+Commands for automation operations in Claude Flow.
+
+## Available Commands
+
+- [auto-agent](./auto-agent.md)
+- [smart-spawn](./smart-spawn.md)
+- [workflow-select](./workflow-select.md)

package/.claude/commands/automation/auto-agent.md

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+# auto agent
+
+Automatically spawn and manage agents based on task requirements.
+
+## Usage
+
+```bash
+npx claude-flow auto agent [options]
+```
+
+## Options
+
+- `--task, -t <description>` - Task description for agent analysis
+- `--max-agents, -m <number>` - Maximum agents to spawn (default: auto)
+- `--min-agents <number>` - Minimum agents required (default: 1)
+- `--strategy, -s <type>` - Selection strategy: optimal, minimal, balanced
+- `--no-spawn` - Analyze only, don't spawn agents
+
+## Examples
+
+### Basic auto-spawning
+```bash
+npx claude-flow auto agent --task "Build a REST API with authentication"
+```
+
+### Constrained spawning
+```bash
+npx claude-flow auto agent -t "Debug performance issue" --max-agents 3
+```
+
+### Analysis only
+```bash
+npx claude-flow auto agent -t "Refactor codebase" --no-spawn
+```
+
+### Minimal strategy
+```bash
+npx claude-flow auto agent -t "Fix bug in login" -s minimal
+```
+
+## How It Works
+
+1. **Task Analysis**
+   - Parses task description
+   - Identifies required skills
+   - Estimates complexity
+   - Determines parallelization opportunities
+
+2. **Agent Selection**
+   - Matches skills to agent types
+   - Considers task dependencies
+   - Optimizes for efficiency
+   - Respects constraints
+
+3. **Topology Selection**
+   - Chooses optimal swarm structure
+   - Configures communication patterns
+   - Sets up coordination rules
+   - Enables monitoring
+
+4. **Automatic Spawning**
+   - Creates selected agents
+   - Assigns specific roles
+   - Distributes subtasks
+   - Initiates coordination
+
+## Agent Types Selected
+
+- **Architect**: System design, architecture decisions
+- **Coder**: Implementation, code generation
+- **Tester**: Test creation, quality assurance
+- **Analyst**: Performance, optimization
+- **Researcher**: Documentation, best practices
+- **Coordinator**: Task management, progress tracking
+
+## Strategies
+
+### Optimal
+- Maximum efficiency
+- May spawn more agents
+- Best for complex tasks
+- Highest resource usage
+
+### Minimal
+- Minimum viable agents
+- Conservative approach
+- Good for simple tasks
+- Lowest resource usage
+
+### Balanced
+- Middle ground
+- Adaptive to complexity
+- Default strategy
+- Good performance/resource ratio
+
+## Integration with Claude Code
+
+```javascript
+// In Claude Code after auto-spawning
+mcp__claude-flow__auto_agent { 
+  task: "Build authentication system",
+  strategy: "balanced",
+  maxAgents: 6
+}
+```
+
+## See Also
+
+- `agent spawn` - Manual agent creation
+- `swarm init` - Initialize swarm manually
+- `smart spawn` - Intelligent agent spawning
+- `workflow select` - Choose predefined workflows

package/.claude/commands/automation/smart-spawn.md

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+# smart-spawn
+
+Intelligently spawn agents based on workload analysis.
+
+## Usage
+```bash
+npx claude-flow automation smart-spawn [options]
+```
+
+## Options
+- `--analyze` - Analyze before spawning
+- `--threshold <n>` - Spawn threshold
+- `--topology <type>` - Preferred topology
+
+## Examples
+```bash
+# Smart spawn with analysis
+npx claude-flow automation smart-spawn --analyze
+
+# Set spawn threshold
+npx claude-flow automation smart-spawn --threshold 5
+
+# Force topology
+npx claude-flow automation smart-spawn --topology hierarchical
+```

package/.claude/commands/automation/workflow-select.md

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+# workflow-select
+
+Automatically select optimal workflow based on task type.
+
+## Usage
+```bash
+npx claude-flow automation workflow-select [options]
+```
+
+## Options
+- `--task <description>` - Task description
+- `--constraints <list>` - Workflow constraints
+- `--preview` - Preview without executing
+
+## Examples
+```bash
+# Select workflow for task
+npx claude-flow automation workflow-select --task "Deploy to production"
+
+# With constraints
+npx claude-flow automation workflow-select --constraints "no-downtime,rollback"
+
+# Preview mode
+npx claude-flow automation workflow-select --task "Database migration" --preview
+```

package/.claude/commands/coordination/README.md

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+# Coordination Commands
+
+Commands for coordination operations in Claude Flow.
+
+## Available Commands
+
+- [swarm-init](./swarm-init.md)
+- [agent-spawn](./agent-spawn.md)
+- [task-orchestrate](./task-orchestrate.md)

package/.claude/commands/coordination/agent-spawn.md

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+# agent-spawn
+
+Spawn a new agent in the current swarm.
+
+## Usage
+```bash
+npx claude-flow agent spawn [options]
+```
+
+## Options
+- `--type <type>` - Agent type (coder, researcher, analyst, tester, coordinator)
+- `--name <name>` - Custom agent name
+- `--skills <list>` - Specific skills (comma-separated)
+
+## Examples
+```bash
+# Spawn coder agent
+npx claude-flow agent spawn --type coder
+
+# With custom name
+npx claude-flow agent spawn --type researcher --name "API Expert"
+
+# With specific skills
+npx claude-flow agent spawn --type coder --skills "python,fastapi,testing"
+```

package/.claude/commands/coordination/swarm-init.md

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+# swarm init
+
+Initialize a Claude Flow swarm with specified topology and configuration.
+
+## Usage
+
+```bash
+npx claude-flow swarm init [options]
+```
+
+## Options
+
+- `--topology, -t <type>` - Swarm topology: mesh, hierarchical, ring, star (default: hierarchical)
+- `--max-agents, -m <number>` - Maximum number of agents (default: 8)
+- `--strategy, -s <type>` - Execution strategy: balanced, parallel, sequential (default: parallel)
+- `--auto-spawn` - Automatically spawn agents based on task complexity
+- `--memory` - Enable cross-session memory persistence
+- `--github` - Enable GitHub integration features
+
+## Examples
+
+### Basic initialization
+```bash
+npx claude-flow swarm init
+```
+
+### Mesh topology for research
+```bash
+npx claude-flow swarm init --topology mesh --max-agents 5 --strategy balanced
+```
+
+### Hierarchical for development
+```bash
+npx claude-flow swarm init --topology hierarchical --max-agents 10 --strategy parallel --auto-spawn
+```
+
+### GitHub-focused swarm
+```bash
+npx claude-flow swarm init --topology star --github --memory
+```
+
+## Topologies
+
+### Mesh
+- All agents connect to all others
+- Best for: Research, exploration, brainstorming
+- Communication: High overhead, maximum information sharing
+
+### Hierarchical
+- Tree structure with clear command chain
+- Best for: Development, structured tasks, large projects
+- Communication: Efficient, clear responsibilities
+
+### Ring
+- Agents connect in a circle
+- Best for: Pipeline processing, sequential workflows
+- Communication: Low overhead, ordered processing
+
+### Star
+- Central coordinator with satellite agents
+- Best for: Simple tasks, centralized control
+- Communication: Minimal overhead, clear coordination
+
+## Integration with Claude Code
+
+Once initialized, use MCP tools in Claude Code:
+```javascript
+mcp__claude-flow__swarm_init { topology: "hierarchical", maxAgents: 8 }
+```
+
+## See Also
+
+- `agent spawn` - Create swarm agents
+- `task orchestrate` - Coordinate task execution
+- `swarm status` - Check swarm state
+- `swarm monitor` - Real-time monitoring

package/.claude/commands/coordination/task-orchestrate.md

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+# task-orchestrate
+
+Orchestrate complex tasks across the swarm.
+
+## Usage
+```bash
+npx claude-flow task orchestrate [options]
+```
+
+## Options
+- `--task <description>` - Task description
+- `--strategy <type>` - Orchestration strategy
+- `--priority <level>` - Task priority (low, medium, high, critical)
+
+## Examples
+```bash
+# Orchestrate development task
+npx claude-flow task orchestrate --task "Implement user authentication"
+
+# High priority task
+npx claude-flow task orchestrate --task "Fix production bug" --priority critical
+
+# With specific strategy
+npx claude-flow task orchestrate --task "Refactor codebase" --strategy parallel
+```

package/.claude/commands/github/README.md

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+# Github Commands
+
+Commands for github operations in Claude Flow.
+
+## Available Commands
+
+- [github-swarm](./github-swarm.md)
+- [repo-analyze](./repo-analyze.md)
+- [pr-enhance](./pr-enhance.md)
+- [issue-triage](./issue-triage.md)
+- [code-review](./code-review.md)

package/.claude/commands/github/code-review.md

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+# code-review
+
+Automated code review with swarm intelligence.
+
+## Usage
+```bash
+npx claude-flow github code-review [options]
+```
+
+## Options
+- `--pr-number <n>` - Pull request to review
+- `--focus <areas>` - Review focus (security, performance, style)
+- `--suggest-fixes` - Suggest code fixes
+
+## Examples
+```bash
+# Review PR
+npx claude-flow github code-review --pr-number 456
+
+# Security focus
+npx claude-flow github code-review --pr-number 456 --focus security
+
+# With fix suggestions
+npx claude-flow github code-review --pr-number 456 --suggest-fixes
+```

package/.claude/commands/github/github-swarm.md

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+# github swarm
+
+Create a specialized swarm for GitHub repository management.
+
+## Usage
+
+```bash
+npx claude-flow github swarm [options]
+```
+
+## Options
+
+- `--repository, -r <owner/repo>` - Target GitHub repository
+- `--agents, -a <number>` - Number of specialized agents (default: 5)
+- `--focus, -f <type>` - Focus area: maintenance, development, review, triage
+- `--auto-pr` - Enable automatic pull request enhancements
+- `--issue-labels` - Auto-categorize and label issues
+- `--code-review` - Enable AI-powered code reviews
+
+## Examples
+
+### Basic GitHub swarm
+```bash
+npx claude-flow github swarm --repository owner/repo
+```
+
+### Maintenance-focused swarm
+```bash
+npx claude-flow github swarm -r owner/repo -f maintenance --issue-labels
+```
+
+### Development swarm with PR automation
+```bash
+npx claude-flow github swarm -r owner/repo -f development --auto-pr --code-review
+```
+
+### Full-featured triage swarm
+```bash
+npx claude-flow github swarm -r owner/repo -a 8 -f triage --issue-labels --auto-pr
+```
+
+## Agent Types
+
+### Issue Triager
+- Analyzes and categorizes issues
+- Suggests labels and priorities
+- Identifies duplicates and related issues
+
+### PR Reviewer
+- Reviews code changes
+- Suggests improvements
+- Checks for best practices
+
+### Documentation Agent
+- Updates README files
+- Creates API documentation
+- Maintains changelog
+
+### Test Agent
+- Identifies missing tests
+- Suggests test cases
+- Validates test coverage
+
+### Security Agent
+- Scans for vulnerabilities
+- Reviews dependencies
+- Suggests security improvements
+
+## Workflows
+
+### Issue Triage Workflow
+1. Scan all open issues
+2. Categorize by type and priority
+3. Apply appropriate labels
+4. Suggest assignees
+5. Link related issues
+
+### PR Enhancement Workflow
+1. Analyze PR changes
+2. Suggest missing tests
+3. Improve documentation
+4. Format code consistently
+5. Add helpful comments
+
+### Repository Health Check
+1. Analyze code quality metrics
+2. Review dependency status
+3. Check test coverage
+4. Assess documentation completeness
+5. Generate health report
+
+## Integration with Claude Code
+
+Use in Claude Code with MCP tools:
+```javascript
+mcp__claude-flow__github_swarm { 
+  repository: "owner/repo", 
+  agents: 6, 
+  focus: "maintenance" 
+}
+```
+
+## See Also
+
+- `repo analyze` - Deep repository analysis
+- `pr enhance` - Enhance pull requests
+- `issue triage` - Intelligent issue management
+- `code review` - Automated reviews