claude-flow-novice 2.15.11 → 2.16.1

package/claude-assets/skills/cfn-dependency-ingestion/src/ingest-dependencies.ts

@@ -0,0 +1,563 @@
+#!/usr/bin/env node
+/**
+ * CFN Dependency Ingestion - TypeScript Implementation
+ * Dynamically discovers and ingests CFN Loop CLI dependency files
+ *
+ * Features:
+ * - Dynamic file discovery from dependency diagram
+ * - Content injection mode (--inject-content) for atomic context loading
+ * - Token estimation with 25k safety limit
+ * - Priority filtering (P0, P1, P2)
+ * - Type filtering (TS, SH)
+ * - File existence validation
+ *
+ * Usage:
+ *   node ingest-dependencies.js [--inject-content] [--priority P0,P1] [--type TS,SH]
+ *
+ * Version: 2.0.0 (Enhancement #5: Content Injection Mode)
+ */
+
+import * as fs from 'fs';
+import * as path from 'path';
+import { execSync } from 'child_process';
+import { fileURLToPath } from 'url';
+
+// Types
+type DiagramType = 'cli' | 'docker';
+
+interface Options {
+  injectContent: boolean;
+  priorityFilter: string;
+  typeFilter: string;
+  includeDeprecated: boolean;
+  skipValidation: boolean;
+  diagram: DiagramType;
+}
+
+interface FileInfo {
+  path: string;
+  priority?: 'P0' | 'P1' | 'P2';
+  type?: 'TS' | 'SH' | 'MD';
+}
+
+interface IngestionResult {
+  files: string[];
+  totalTokens: number;
+  content?: string;
+  exceeded25kLimit: boolean;
+}
+
+// Constants
+const PROJECT_ROOT = execSync('git rev-parse --show-toplevel', { encoding: 'utf-8' }).trim();
+const DIAGRAMS: Record<DiagramType, string> = {
+  cli: path.join(PROJECT_ROOT, 'readme/CFN_LOOP_DEPENDENCY_DIAGRAM.txt'),
+  docker: path.join(PROJECT_ROOT, 'readme/CFN_LOOP_DOCKER_DEPENDENCY_DIAGRAM.txt'),
+};
+const TOKEN_LIMIT = 25000; // 25k token safety limit (for single-file mode)
+const CHUNK_SIZE = 20000; // 20k tokens per chunk for multi-file mode
+const CHARS_PER_TOKEN = 4; // Rough estimation
+const TEMP_DIR = '/tmp/cfn-dependency-chunks'; // Temp directory for chunk files
+
+// Global state for current diagram (set during parseArgs)
+let DIAGRAM_PATH = DIAGRAMS.cli;
+
+// Parse command-line arguments
+function parseArgs(): Options {
+  const args = process.argv.slice(2);
+  const options: Options = {
+    injectContent: false,
+    priorityFilter: '',
+    typeFilter: '',
+    includeDeprecated: false,
+    skipValidation: false,
+    diagram: 'cli',
+  };
+
+  for (let i = 0; i < args.length; i++) {
+    switch (args[i]) {
+      case '--inject-content':
+        options.injectContent = true;
+        break;
+      case '--priority':
+        options.priorityFilter = args[++i] || '';
+        break;
+      case '--type':
+        options.typeFilter = args[++i] || '';
+        break;
+      case '--include-deprecated':
+        options.includeDeprecated = true;
+        break;
+      case '--skip-validation':
+        options.skipValidation = true;
+        break;
+      case '--diagram':
+        const diagramArg = args[++i] || 'cli';
+        if (diagramArg !== 'cli' && diagramArg !== 'docker') {
+          console.error(`Invalid diagram type: ${diagramArg}. Use 'cli' or 'docker'`);
+          process.exit(1);
+        }
+        options.diagram = diagramArg as DiagramType;
+        break;
+      case '--help':
+      case '-h':
+        printHelp();
+        process.exit(0);
+      default:
+        console.error(`Unknown option: ${args[i]}`);
+        printHelp();
+        process.exit(1);
+    }
+  }
+
+  // Set global diagram path based on option
+  DIAGRAM_PATH = DIAGRAMS[options.diagram];
+
+  return options;
+}
+
+function printHelp(): void {
+  console.log(`
+CFN Dependency Ingestion - TypeScript Implementation
+
+Usage:
+  node ingest-dependencies.js [options]
+
+Options:
+  --diagram cli|docker     Select dependency diagram (default: cli)
+  --inject-content         Inject file contents directly (default: output Read commands)
+  --priority P0,P1,P2     Filter by priority levels (comma-separated)
+  --type TS,SH            Filter by file type (TS=TypeScript, SH=Shell)
+  --include-deprecated    Include deprecated files
+  --skip-validation       Skip file existence validation
+  --help, -h             Show this help message
+
+Diagrams:
+  cli    - CFN_LOOP_DEPENDENCY_DIAGRAM.txt (CLI mode execution flow)
+  docker - CFN_LOOP_DOCKER_DEPENDENCY_DIAGRAM.txt (Docker mode execution flow)
+
+Examples:
+  # CLI mode dependencies (default)
+  node ingest-dependencies.js --inject-content
+
+  # Docker mode dependencies
+  node ingest-dependencies.js --diagram docker --inject-content
+
+  # P0 files only with content injection
+  node ingest-dependencies.js --inject-content --priority P0
+
+  # TypeScript files only
+  node ingest-dependencies.js --type TS
+`);
+}
+
+// Extract all file paths from the dependency diagram
+function extractAllFiles(): string[] {
+  const diagramContent = fs.readFileSync(DIAGRAM_PATH, 'utf-8');
+  const filePattern = /\.(claude|src|tests)\/[^ ,)]+\.(md|ts|sh|js|cjs)/g;
+  const matches = diagramContent.match(filePattern) || [];
+
+  // Deduplicate and filter wildcards
+  const uniqueFiles = [...new Set(matches)]
+    .filter(file => !file.includes('*') && !file.includes('<'));
+
+  return uniqueFiles;
+}
+
+// Validate file existence
+function validateFileExistence(files: string[], skipValidation: boolean): string[] {
+  if (skipValidation) {
+    return files;
+  }
+
+  const validFiles: string[] = [];
+  let missingCount = 0;
+
+  for (const file of files) {
+    // Handle both absolute and relative paths
+    const fullPath = path.isAbsolute(file)
+      ? file
+      : path.join(PROJECT_ROOT, file);
+
+    if (fs.existsSync(fullPath)) {
+      validFiles.push(file);
+    } else {
+      console.error(`WARNING: File not found: ${file}`);
+      missingCount++;
+    }
+  }
+
+  if (missingCount > 0) {
+    console.error(`WARNING: ${missingCount} file(s) not found (use --skip-validation to disable checks)`);
+  }
+
+  return validFiles;
+}
+
+// Filter by priority markers
+function filterByPriority(files: string[], priorityFilter: string): string[] {
+  if (!priorityFilter) {
+    return files;
+  }
+
+  const diagramContent = fs.readFileSync(DIAGRAM_PATH, 'utf-8');
+  const priorities = priorityFilter.split(',');
+
+  return files.filter(file => {
+    const filename = path.basename(file);
+    return priorities.some(priority => {
+      const pattern = new RegExp(`\\[${priority}\\].*${filename}`);
+      return pattern.test(diagramContent);
+    });
+  });
+}
+
+// Filter by file type
+function filterByType(files: string[], typeFilter: string): string[] {
+  if (!typeFilter) {
+    return files;
+  }
+
+  return files.filter(file => {
+    const types = typeFilter.split(',');
+
+    return types.some(type => {
+      if (type === 'TS') {
+        return /\.(ts|js|cjs)$/.test(file);
+      } else if (type === 'SH') {
+        return /\.sh$/.test(file);
+      }
+      return false;
+    });
+  });
+}
+
+// Filter deprecated files
+function filterDeprecated(files: string[], includeDeprecated: boolean): string[] {
+  if (includeDeprecated) {
+    return files;
+  }
+
+  const diagramContent = fs.readFileSync(DIAGRAM_PATH, 'utf-8');
+
+  return files.filter(file => {
+    const filename = path.basename(file);
+    const deprecatedPattern = new RegExp(`\\[DEPRECATED\\].*${filename}`);
+
+    // Exclude if marked DEPRECATED
+    if (deprecatedPattern.test(diagramContent)) {
+      return false;
+    }
+
+    // Exclude helpers unless marked with priority
+    if (file.includes('/helpers/')) {
+      const priorityPattern = new RegExp(`\\[(P0|P1|P2)\\].*${filename}`);
+      return priorityPattern.test(diagramContent);
+    }
+
+    return true;
+  });
+}
+
+// Categorize files by priority
+function categorizeByPriority(files: string[], diagramType: DiagramType): Record<string, string[]> {
+  const diagramContent = fs.readFileSync(DIAGRAM_PATH, 'utf-8');
+  const diagramFile = diagramType === 'docker'
+    ? 'readme/CFN_LOOP_DOCKER_DEPENDENCY_DIAGRAM.txt'
+    : 'readme/CFN_LOOP_DEPENDENCY_DIAGRAM.txt';
+
+  const categories: Record<string, string[]> = {
+    diagram: [diagramFile],
+    P0: [],
+    P1: [],
+    P2: [],
+    coordination: [],
+    agents: [],
+    commands: [],
+  };
+
+  for (const file of files) {
+    const filename = path.basename(file);
+
+    if (/\[P0\]/.test(diagramContent) && new RegExp(`\\[P0\\].*${filename}`).test(diagramContent)) {
+      categories.P0.push(file);
+    } else if (/\[P1\]/.test(diagramContent) && new RegExp(`\\[P1\\].*${filename}`).test(diagramContent)) {
+      categories.P1.push(file);
+    } else if (/\[P2\]/.test(diagramContent) && new RegExp(`\\[P2\\].*${filename}`).test(diagramContent)) {
+      categories.P2.push(file);
+    } else if (/coordination-wait|report-completion|orchestrate|cfn-redis/.test(file)) {
+      categories.coordination.push(file);
+    } else if (file.includes('.claude/agents/cfn-dev-team')) {
+      categories.agents.push(file);
+    } else if (file.includes('.claude/commands')) {
+      categories.commands.push(file);
+    }
+  }
+
+  return categories;
+}
+
+// Estimate token count
+function estimateTokens(text: string): number {
+  return Math.ceil(text.length / CHARS_PER_TOKEN);
+}
+
+// Read file content with error handling
+function readFileContent(filePath: string): string {
+  try {
+    // Handle both absolute and relative paths
+    const fullPath = path.isAbsolute(filePath)
+      ? filePath
+      : path.join(PROJECT_ROOT, filePath);
+    return fs.readFileSync(fullPath, 'utf-8');
+  } catch (error) {
+    return `[ERROR: Could not read file: ${error}]`;
+  }
+}
+
+// Split content into chunks for parallel reading
+function splitIntoChunks(files: string[]): { chunkFiles: string[], totalTokens: number } {
+  // Ensure temp directory exists
+  if (!fs.existsSync(TEMP_DIR)) {
+    fs.mkdirSync(TEMP_DIR, { recursive: true });
+  }
+
+  // Clean old chunks
+  const oldChunks = fs.readdirSync(TEMP_DIR).filter(f => f.startsWith('chunk-'));
+  oldChunks.forEach(f => fs.unlinkSync(path.join(TEMP_DIR, f)));
+
+  let currentChunk = '';
+  let currentChunkTokens = 0;
+  let chunkIndex = 1;
+  const chunkFiles: string[] = [];
+  let totalTokens = 0;
+
+  for (const file of files) {
+    const content = readFileContent(file);
+    const fileBlock = `
+${'='.repeat(80)}
+FILE: ${file}
+${'='.repeat(80)}
+
+${content}
+
+`;
+
+    const blockTokens = estimateTokens(fileBlock);
+
+    // If adding this file exceeds chunk size, write current chunk
+    if (currentChunkTokens + blockTokens > CHUNK_SIZE && currentChunk.length > 0) {
+      const chunkPath = path.join(TEMP_DIR, `chunk-${chunkIndex}.txt`);
+      fs.writeFileSync(chunkPath, currentChunk, 'utf-8');
+      chunkFiles.push(chunkPath);
+
+      currentChunk = '';
+      currentChunkTokens = 0;
+      chunkIndex++;
+    }
+
+    currentChunk += fileBlock;
+    currentChunkTokens += blockTokens;
+    totalTokens += blockTokens;
+  }
+
+  // Write final chunk if any content remains
+  if (currentChunk.length > 0) {
+    const chunkPath = path.join(TEMP_DIR, `chunk-${chunkIndex}.txt`);
+    fs.writeFileSync(chunkPath, currentChunk, 'utf-8');
+    chunkFiles.push(chunkPath);
+  }
+
+  return { chunkFiles, totalTokens };
+}
+
+// Inject content mode - read all files and concatenate
+function injectContent(files: string[]): IngestionResult {
+  let totalContent = '';
+  let totalChars = 0;
+  const processedFiles: string[] = [];
+
+  // Build content with file markers
+  for (const file of files) {
+    const content = readFileContent(file);
+    const fileBlock = `
+${'='.repeat(80)}
+FILE: ${file}
+${'='.repeat(80)}
+
+${content}
+
+`;
+
+    totalContent += fileBlock;
+    totalChars += fileBlock.length;
+    processedFiles.push(file);
+  }
+
+  const totalTokens = estimateTokens(totalContent);
+  const exceeded25kLimit = totalTokens > TOKEN_LIMIT;
+
+  if (exceeded25kLimit) {
+    console.error(`WARNING: Content exceeds 25k token limit (${totalTokens} tokens)`);
+    console.error('Splitting into 20k token chunks for parallel reading...');
+
+    const { chunkFiles, totalTokens: chunkedTokens } = splitIntoChunks(files);
+
+    console.log('');
+    console.log('# CFN Loop CLI Dependency Context (Chunked)');
+    console.log(`# Total tokens: ${chunkedTokens.toLocaleString()}`);
+    console.log(`# Chunks: ${chunkFiles.length} files (20k tokens each)`);
+    console.log(`# Location: ${TEMP_DIR}/`);
+    console.log('');
+    console.log('# For Task tool agents: Read these files in parallel');
+    chunkFiles.forEach((chunkFile, idx) => {
+      console.log(`Read: ${chunkFile}`);
+    });
+    console.log('');
+    console.log('# Cleanup after reading: rm -rf /tmp/cfn-dependency-chunks/');
+
+    return {
+      files: processedFiles,
+      totalTokens: chunkedTokens,
+      exceeded25kLimit: true,
+    };
+  }
+
+  return {
+    files: processedFiles,
+    totalTokens,
+    content: totalContent,
+    exceeded25kLimit: false,
+  };
+}
+
+// Output Read commands (traditional mode)
+function outputReadCommands(categories: Record<string, string[]>, diagramType: DiagramType): void {
+  const seenFiles = new Set<string>();
+  const modeName = diagramType === 'docker' ? 'Docker' : 'CLI';
+  const diagramFile = categories.diagram[0];
+
+  const outputFile = (file: string) => {
+    if (!seenFiles.has(file)) {
+      seenFiles.add(file);
+      console.log(`Read: ${file}`);
+    }
+  };
+
+  console.log(`# CFN Loop ${modeName} Dependency Ingestion`);
+  console.log(`# Generated from: ${diagramFile}`);
+  console.log('');
+
+  console.log('# Step 1: Read the dependency diagram');
+  categories.diagram.forEach(outputFile);
+  console.log('');
+
+  console.log('# Step 2: Read P0 critical path files (required for 5-iteration e2e)');
+  if (categories.P0.length > 0) {
+    categories.P0.forEach(outputFile);
+  } else {
+    console.log('# No P0 files found matching filters');
+  }
+  console.log('');
+
+  console.log('# Step 3: Read P1 files (post-validation features)');
+  if (categories.P1.length > 0) {
+    categories.P1.forEach(outputFile);
+  } else {
+    console.log('# No P1 files found matching filters');
+  }
+  console.log('');
+
+  console.log('# Step 4: Read P2 files (deferred features)');
+  if (categories.P2.length > 0) {
+    categories.P2.forEach(outputFile);
+  } else {
+    console.log('# No P2 files found matching filters');
+  }
+  console.log('');
+
+  console.log('# Step 5: Read coordination layer (Redis/Shell scripts)');
+  if (categories.coordination.length > 0) {
+    categories.coordination.forEach(outputFile);
+  } else {
+    console.log('# No coordination files found matching filters');
+  }
+  console.log('');
+
+  console.log('# Step 6: Read agent profiles (coordinators and workers)');
+  if (categories.agents.length > 0) {
+    categories.agents.forEach(outputFile);
+  } else {
+    console.log('# No agent profile files found');
+  }
+  console.log('');
+
+  console.log('# Step 7: Read slash commands');
+  if (categories.commands.length > 0) {
+    categories.commands.forEach(outputFile);
+  } else {
+    console.log('# No command files found');
+  }
+  console.log('');
+
+  console.log('# Ingestion complete');
+  console.log(`# Total files: ${seenFiles.size}`);
+}
+
+// Main execution
+function main(): void {
+  const options = parseArgs();
+
+  // Validate diagram exists
+  if (!fs.existsSync(DIAGRAM_PATH)) {
+    console.error(`ERROR: Dependency diagram not found: ${DIAGRAM_PATH}`);
+    process.exit(1);
+  }
+
+  const modeName = options.diagram === 'docker' ? 'Docker' : 'CLI';
+  const diagramFile = options.diagram === 'docker'
+    ? 'readme/CFN_LOOP_DOCKER_DEPENDENCY_DIAGRAM.txt'
+    : 'readme/CFN_LOOP_DEPENDENCY_DIAGRAM.txt';
+
+  // Extract and filter files
+  let files = extractAllFiles();
+  files = validateFileExistence(files, options.skipValidation);
+  files = filterByPriority(files, options.priorityFilter);
+  files = filterByType(files, options.typeFilter);
+  files = filterDeprecated(files, options.includeDeprecated);
+
+  // Add diagram to file list
+  const allFiles = [diagramFile, ...files];
+
+  if (options.injectContent) {
+    // Content injection mode
+    const result = injectContent(allFiles);
+
+    if (result.exceeded25kLimit) {
+      // Fallback to Read commands
+      const categories = categorizeByPriority(files, options.diagram);
+      outputReadCommands(categories, options.diagram);
+    } else {
+      // Output injected content
+      console.log(`# CFN Loop ${modeName} Dependency Context`);
+      console.log(`# Files: ${result.files.length}`);
+      console.log(`# Estimated tokens: ${result.totalTokens.toLocaleString()}`);
+      console.log(`# Token limit: ${TOKEN_LIMIT.toLocaleString()}`);
+      console.log('');
+      console.log(result.content);
+    }
+  } else {
+    // Traditional Read command mode
+    const categories = categorizeByPriority(files, options.diagram);
+    outputReadCommands(categories, options.diagram);
+  }
+}
+
+// Execute if run directly (ESM compatible)
+const __filename = fileURLToPath(import.meta.url);
+const isMainModule = process.argv[1] === __filename;
+
+if (isMainModule) {
+  main();
+}
+
+export { extractAllFiles, filterByPriority, filterByType, injectContent, estimateTokens };

package/claude-assets/skills/cfn-environment-sanitization/sanitize-environment.sh

@@ -20,10 +20,20 @@ sanitize_environment() {
     export CFN_AGENT_ID="$agent_id"
     export CFN_TASK_ID="$task_id"
 
-    # Validate critical paths
-    if [ ! -d "/home/user/claude-flow-novice" ]; then
-        echo "ERROR: Project root not found" >&2
-        return 1
+    # Validate critical paths - detect project root dynamically
+    local project_root=""
+    if [ -n "${CFN_PROJECT_ROOT:-}" ]; then
+        project_root="$CFN_PROJECT_ROOT"
+    elif [ -d ".claude" ] && [ -f "package.json" ]; then
+        project_root="$(pwd)"
+    else
+        # Try to find project root by searching upward
+        project_root="$(git rev-parse --show-toplevel 2>/dev/null || echo "$(pwd)")"
+    fi
+    
+    if [ ! -d "$project_root/.claude" ]; then
+        echo "WARNING: CFN project structure not found at $project_root" >&2
+        # Don't fail - continue with sanitization
     fi
 
     # Set secure permissions

package/claude-assets/skills/cfn-loop-orchestration/.backups/unknown/1763619700_33aff4a69b99159e4e849107ebc4d09f/metadata.json

@@ -0,0 +1,8 @@
+{
+  "timestamp": "1763619700",
+  "agent_id": "unknown",
+  "original_file": "/mnt/c/Users/masha/Documents/claude-flow-novice/.claude/agents/cfn-dev-team/coordinators/cfn-v3-coordinator.md",
+  "file_hash": "33aff4a69b99159e4e849107ebc4d09f",
+  "backup_path": "/mnt/c/Users/masha/Documents/claude-flow-novice/.claude/skills/cfn-loop-orchestration/.backups/unknown/1763619700_33aff4a69b99159e4e849107ebc4d09f",
+  "created_at": "2025-11-20T06:21:40Z"
+}