claude-flow-novice 1.3.0 → 1.3.2

package/src/cli/simple-commands/hive-mind/mcp-wrapper.js

@@ -0,0 +1,1364 @@
+/**
+ * MCP Tool Wrapper for Hive Mind System
+ * Wraps all 87 MCP tools for coordinated swarm usage
+ */
+
+import { spawn } from 'child_process';
+
+/**
+ * MCP Tool categories and their methods
+ */
+const MCP_TOOLS = {
+  swarm: [
+    'swarm_init',
+    'agent_spawn',
+    'task_orchestrate',
+    'swarm_status',
+    'agent_list',
+    'agent_metrics',
+    'swarm_monitor',
+    'topology_optimize',
+    'load_balance',
+    'coordination_sync',
+    'swarm_scale',
+    'swarm_destroy',
+  ],
+  neural: [
+    'neural_status',
+    'neural_train',
+    'neural_patterns',
+    'neural_predict',
+    'model_load',
+    'model_save',
+    'wasm_optimize',
+    'inference_run',
+    'pattern_recognize',
+    'cognitive_analyze',
+    'learning_adapt',
+    'neural_compress',
+    'ensemble_create',
+    'transfer_learn',
+    'neural_explain',
+  ],
+  memory: [
+    'memory_usage',
+    'memory_search',
+    'memory_persist',
+    'memory_namespace',
+    'memory_backup',
+    'memory_restore',
+    'memory_compress',
+    'memory_sync',
+    'cache_manage',
+    'state_snapshot',
+    'context_restore',
+    'memory_analytics',
+  ],
+  performance: [
+    'performance_report',
+    'bottleneck_analyze',
+    'token_usage',
+    'benchmark_run',
+    'metrics_collect',
+    'trend_analysis',
+    'cost_analysis',
+    'quality_assess',
+    'error_analysis',
+    'usage_stats',
+    'health_check',
+  ],
+  github: [
+    'github_repo_analyze',
+    'github_pr_manage',
+    'github_issue_track',
+    'github_release_coord',
+    'github_workflow_auto',
+    'github_code_review',
+    'github_sync_coord',
+    'github_metrics',
+  ],
+  workflow: [
+    'workflow_create',
+    'workflow_execute',
+    'workflow_export',
+    'automation_setup',
+    'pipeline_create',
+    'scheduler_manage',
+    'trigger_setup',
+    'workflow_template',
+    'batch_process',
+    'parallel_execute',
+  ],
+  daa: [
+    'daa_agent_create',
+    'daa_capability_match',
+    'daa_resource_alloc',
+    'daa_lifecycle_manage',
+    'daa_communication',
+    'daa_consensus',
+    'daa_fault_tolerance',
+    'daa_optimization',
+  ],
+  system: [
+    'terminal_execute',
+    'config_manage',
+    'features_detect',
+    'security_scan',
+    'backup_create',
+    'restore_system',
+    'log_analysis',
+    'diagnostic_run',
+  ],
+  sparc: ['sparc_mode'],
+  task: ['task_status', 'task_results'],
+};
+
+/**
+ * MCPToolWrapper class for unified MCP tool access
+ */
+export class MCPToolWrapper {
+  constructor(config = {}) {
+    this.config = {
+      parallel: true,
+      timeout: 60000,
+      retryCount: 3,
+      ...config,
+    };
+
+    this.toolStats = new Map();
+    this.parallelQueue = [];
+    this.executing = false;
+
+    /** @type {import('better-sqlite3').Database | null} */
+    this.memoryDb = null;
+
+    // Initialize memory store for fallback
+    this.memoryStore = new Map();
+
+    // Initialize real memory storage
+    this.initializeMemoryStorage();
+  }
+
+  /**
+   * Initialize real memory storage using SQLite
+   */
+  async initializeMemoryStorage() {
+    try {
+      const { createDatabase, isSQLiteAvailable } = await import(
+        '../../../memory/sqlite-wrapper.js'
+      );
+      const path = await import('path');
+      const fs = await import('fs');
+
+      // Check if SQLite is available
+      const sqliteAvailable = await isSQLiteAvailable();
+      if (!sqliteAvailable) {
+        throw new Error('SQLite not available');
+      }
+
+      // Create .hive-mind directory if it doesn't exist
+      const hiveMindDir = path.join(process.cwd(), '.hive-mind');
+      if (!fs.existsSync(hiveMindDir)) {
+        fs.mkdirSync(hiveMindDir, { recursive: true });
+      }
+
+      // Initialize SQLite database
+      const dbPath = path.join(hiveMindDir, 'memory.db');
+      this.memoryDb = await createDatabase(dbPath);
+
+      // Create memories table
+      this.memoryDb.exec(`
+        CREATE TABLE IF NOT EXISTS memories (
+          id INTEGER PRIMARY KEY AUTOINCREMENT,
+          namespace TEXT NOT NULL,
+          key TEXT NOT NULL,
+          value TEXT NOT NULL,
+          type TEXT DEFAULT 'knowledge',
+          timestamp INTEGER NOT NULL,
+          created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+          UNIQUE(namespace, key)
+        )
+      `);
+
+      // Real memory storage initialized with SQLite
+    } catch (error) {
+      console.warn(
+        'Failed to initialize SQLite storage, falling back to in-memory:',
+        error.message,
+      );
+      this.memoryDb = null;
+      this.memoryStore = new Map(); // Fallback to in-memory storage
+
+      // Log Windows-specific help if applicable
+      if (process.platform === 'win32') {
+        console.info(`
+Windows users: For persistent storage, please see installation guide:
+https://github.com/ruvnet/claude-code-flow/docs/windows-installation.md
+`);
+      }
+    }
+  }
+
+  /**
+   * Execute MCP tool with automatic retry and error handling
+   */
+  async executeTool(toolName, params = {}) {
+    const startTime = Date.now();
+    let lastError = null;
+
+    for (let attempt = 1; attempt <= this.config.retryCount; attempt++) {
+      try {
+        const result = await this._executeToolInternal(toolName, params);
+
+        // Track statistics
+        this._trackToolUsage(toolName, Date.now() - startTime, true);
+
+        return result;
+      } catch (error) {
+        lastError = error;
+        console.error(`Attempt ${attempt} failed for ${toolName}:`, error.message);
+
+        if (attempt < this.config.retryCount) {
+          // Exponential backoff
+          await new Promise((resolve) => setTimeout(resolve, Math.pow(2, attempt) * 1000));
+        }
+      }
+    }
+
+    // Track failure
+    this._trackToolUsage(toolName, Date.now() - startTime, false);
+
+    throw new Error(
+      `Failed to execute ${toolName} after ${this.config.retryCount} attempts: ${lastError.message}`,
+    );
+  }
+
+  /**
+   * Execute multiple tools in parallel with optimized batching
+   */
+  async executeParallel(toolCalls) {
+    if (!this.config.parallel) {
+      // Execute sequentially if parallel is disabled
+      const results = [];
+      for (const call of toolCalls) {
+        results.push(await this.executeTool(call.tool, call.params));
+      }
+      return results;
+    }
+
+    if (!Array.isArray(toolCalls) || toolCalls.length === 0) {
+      return [];
+    }
+
+    const startTime = Date.now();
+
+    // Intelligent concurrency limit based on tool types
+    const concurrencyLimit = this._calculateOptimalConcurrency(toolCalls);
+
+    // Group tools by priority and dependency
+    const toolGroups = this._groupToolsByPriority(toolCalls);
+    const allResults = [];
+
+    try {
+      // Execute high-priority tools first
+      for (const group of toolGroups) {
+        const groupResults = [];
+
+        for (let i = 0; i < group.length; i += concurrencyLimit) {
+          const batch = group.slice(i, i + concurrencyLimit);
+
+          // Execute batch with timeout and retry logic
+          const batchPromises = batch.map((call) =>
+            this._executeWithTimeout(call, this.config.timeout),
+          );
+
+          const batchResults = await Promise.allSettled(batchPromises);
+
+          // Process results and handle failures
+          for (let j = 0; j < batchResults.length; j++) {
+            const result = batchResults[j];
+            if (result.status === 'fulfilled') {
+              groupResults.push(result.value);
+            } else {
+              console.warn(`Tool execution failed: ${batch[j].tool}`, result.reason);
+              groupResults.push({ error: result.reason.message, tool: batch[j].tool });
+            }
+          }
+        }
+
+        allResults.push(...groupResults);
+      }
+
+      // Track performance metrics
+      const executionTime = Date.now() - startTime;
+      this._trackBatchPerformance(toolCalls.length, executionTime, concurrencyLimit);
+
+      return allResults;
+    } catch (error) {
+      console.error('Parallel execution failed:', error);
+      throw error;
+    }
+  }
+
+  /**
+   * Calculate optimal concurrency based on tool types
+   */
+  _calculateOptimalConcurrency(toolCalls) {
+    const toolTypes = toolCalls.map((call) => this._getToolCategory(call.tool));
+    const uniqueTypes = new Set(toolTypes);
+
+    // Heavy operations (neural, github) need lower concurrency
+    const heavyTypes = ['neural', 'github', 'workflow'];
+    const hasHeavyOps = toolTypes.some((type) => heavyTypes.includes(type));
+
+    if (hasHeavyOps) {
+      return Math.min(3, Math.max(1, Math.floor(toolCalls.length / 2)));
+    }
+
+    // Light operations (memory, performance) can handle higher concurrency
+    return Math.min(8, Math.max(2, Math.floor(toolCalls.length / 1.5)));
+  }
+
+  /**
+   * Group tools by execution priority
+   */
+  _groupToolsByPriority(toolCalls) {
+    const priorities = {
+      critical: [], // swarm_init, swarm_destroy
+      high: [], // agent_spawn, memory operations
+      medium: [], // task operations, monitoring
+      low: [], // analytics, reporting
+    };
+
+    toolCalls.forEach((call) => {
+      const category = this._getToolCategory(call.tool);
+      const tool = call.tool;
+
+      if (['swarm_init', 'swarm_destroy', 'memory_backup'].includes(tool)) {
+        priorities.critical.push(call);
+      } else if (['agent_spawn', 'memory_usage', 'neural_train'].includes(tool)) {
+        priorities.high.push(call);
+      } else if (category === 'performance' || tool.includes('report')) {
+        priorities.low.push(call);
+      } else {
+        priorities.medium.push(call);
+      }
+    });
+
+    // Return groups in priority order, filtering empty groups
+    return [priorities.critical, priorities.high, priorities.medium, priorities.low].filter(
+      (group) => group.length > 0,
+    );
+  }
+
+  /**
+   * Execute tool with timeout wrapper
+   */
+  async _executeWithTimeout(call, timeout) {
+    return new Promise((resolve, reject) => {
+      const timer = setTimeout(() => {
+        reject(new Error(`Tool ${call.tool} timed out after ${timeout}ms`));
+      }, timeout);
+
+      this.executeTool(call.tool, call.params)
+        .then((result) => {
+          clearTimeout(timer);
+          resolve(result);
+        })
+        .catch((error) => {
+          clearTimeout(timer);
+          reject(error);
+        });
+    });
+  }
+
+  /**
+   * Track batch execution performance
+   */
+  _trackBatchPerformance(toolCount, executionTime, concurrency) {
+    if (!this.batchStats) {
+      this.batchStats = {
+        totalBatches: 0,
+        totalTools: 0,
+        totalTime: 0,
+        avgConcurrency: 0,
+        avgToolsPerBatch: 0,
+        avgTimePerTool: 0,
+      };
+    }
+
+    this.batchStats.totalBatches++;
+    this.batchStats.totalTools += toolCount;
+    this.batchStats.totalTime += executionTime;
+    this.batchStats.avgConcurrency =
+      (this.batchStats.avgConcurrency * (this.batchStats.totalBatches - 1) + concurrency) /
+      this.batchStats.totalBatches;
+    this.batchStats.avgToolsPerBatch = this.batchStats.totalTools / this.batchStats.totalBatches;
+    this.batchStats.avgTimePerTool = this.batchStats.totalTime / this.batchStats.totalTools;
+  }
+
+  /**
+   * Internal tool execution
+   */
+  async _executeToolInternal(toolName, params) {
+    const toolCategory = this._getToolCategory(toolName);
+    if (!toolCategory) {
+      throw new Error(`Unknown MCP tool: ${toolName}`);
+    }
+
+    // Handle memory operations with real storage
+    if (toolName === 'memory_usage') {
+      if (params.action === 'store') {
+        return await this.storeMemory(params.namespace, params.key, params.value, params.type);
+      } else if (params.action === 'retrieve') {
+        return await this.retrieveMemory(params.namespace, params.key);
+      }
+    } else if (toolName === 'memory_search') {
+      return await this.searchMemory(params.namespace, params.pattern);
+    } else if (toolName === 'swarm_status') {
+      return await this.getSwarmStatus(params);
+    }
+
+    // For other tools, use mock responses
+    console.log(`Executing MCP tool: mcp__claude-flow__${toolName} with params:`, params);
+
+    // Simulate async execution for non-memory tools
+    await new Promise((resolve) => setTimeout(resolve, Math.random() * 500));
+
+    // Mock response based on tool type
+    const mockResponse = this._getMockResponse(toolName, params);
+    return mockResponse;
+  }
+
+  /**
+   * Get tool category
+   */
+  _getToolCategory(toolName) {
+    for (const [category, tools] of Object.entries(MCP_TOOLS)) {
+      if (tools.includes(toolName)) {
+        return category;
+      }
+    }
+    return null;
+  }
+
+  /**
+   * Get mock response for demonstration
+   */
+  _getMockResponse(toolName, params) {
+    // Mock responses for different tool types
+    const mockResponses = {
+      swarm_init: {
+        swarmId: `swarm-${Date.now()}`,
+        topology: params.topology || 'hierarchical',
+        status: 'initialized',
+      },
+      agent_spawn: {
+        agentId: `agent-${Date.now()}-${Math.random().toString(36).substring(2, 11)}`,
+        type: params.type,
+        status: 'active',
+      },
+      task_orchestrate: {
+        taskId: `task-${Date.now()}`,
+        status: 'orchestrated',
+        strategy: params.strategy || 'parallel',
+      },
+      memory_usage: {
+        action: params.action,
+        result: params.action === 'store' ? 'stored' : 'retrieved',
+        data: params.value || null,
+      },
+      neural_status: {
+        status: 'ready',
+        models: 27,
+        accuracy: 0.848,
+      },
+    };
+
+    return mockResponses[toolName] || { status: 'success', toolName };
+  }
+
+  /**
+   * Track tool usage statistics
+   */
+  _trackToolUsage(toolName, duration, success) {
+    if (!this.toolStats.has(toolName)) {
+      this.toolStats.set(toolName, {
+        calls: 0,
+        successes: 0,
+        failures: 0,
+        totalDuration: 0,
+        avgDuration: 0,
+      });
+    }
+
+    const stats = this.toolStats.get(toolName);
+    stats.calls++;
+    if (success) {
+      stats.successes++;
+    } else {
+      stats.failures++;
+    }
+    stats.totalDuration += duration;
+    stats.avgDuration = stats.totalDuration / stats.calls;
+  }
+
+  /**
+   * Get comprehensive tool statistics
+   */
+  getStatistics() {
+    const toolStats = {};
+    this.toolStats.forEach((value, key) => {
+      toolStats[key] = { ...value };
+    });
+
+    return {
+      tools: toolStats,
+      batch: this.batchStats || {
+        totalBatches: 0,
+        totalTools: 0,
+        totalTime: 0,
+        avgConcurrency: 0,
+        avgToolsPerBatch: 0,
+        avgTimePerTool: 0,
+      },
+      spawn: this.spawnStats || {
+        totalSpawns: 0,
+        totalAgents: 0,
+        totalTime: 0,
+        avgTimePerAgent: 0,
+        bestTime: 0,
+        worstTime: 0,
+      },
+      performance: {
+        totalCalls: Array.from(this.toolStats.values()).reduce((sum, stat) => sum + stat.calls, 0),
+        successRate: this._calculateOverallSuccessRate(),
+        avgLatency: this._calculateAvgLatency(),
+        throughput: this._calculateThroughput(),
+      },
+    };
+  }
+
+  /**
+   * Calculate overall success rate
+   */
+  _calculateOverallSuccessRate() {
+    const total = Array.from(this.toolStats.values()).reduce((sum, stat) => sum + stat.calls, 0);
+    const successes = Array.from(this.toolStats.values()).reduce(
+      (sum, stat) => sum + stat.successes,
+      0,
+    );
+
+    return total > 0 ? ((successes / total) * 100).toFixed(2) : 100;
+  }
+
+  /**
+   * Calculate average latency
+   */
+  _calculateAvgLatency() {
+    const stats = Array.from(this.toolStats.values()).filter((stat) => stat.calls > 0);
+    if (stats.length === 0) return 0;
+
+    const totalLatency = stats.reduce((sum, stat) => sum + stat.avgDuration, 0);
+    return (totalLatency / stats.length).toFixed(2);
+  }
+
+  /**
+   * Calculate throughput (operations per second)
+   */
+  _calculateThroughput() {
+    const batchStats = this.batchStats;
+    if (!batchStats || batchStats.totalTime === 0) return 0;
+
+    return (batchStats.totalTools / (batchStats.totalTime / 1000)).toFixed(2);
+  }
+
+  /**
+   * Create batch of tool calls for parallel execution
+   */
+  createBatch(calls) {
+    return calls.map((call) => ({
+      tool: call.tool,
+      params: call.params || {},
+    }));
+  }
+
+  /**
+   * Execute swarm initialization sequence with optimization
+   */
+  async initializeSwarm(config) {
+    const swarmId = config.swarmId || `swarm-${Date.now()}`;
+    const startTime = Date.now();
+
+    try {
+      // Phase 1: Critical initialization (sequential)
+      const criticalOps = [
+        {
+          tool: 'swarm_init',
+          params: {
+            topology: config.topology || 'hierarchical',
+            maxAgents: config.maxAgents || 8,
+            strategy: 'auto',
+            swarmId,
+          },
+        },
+      ];
+
+      const [swarmInitResult] = await this.executeParallel(criticalOps);
+
+      // Phase 2: Supporting services (parallel)
+      const supportingOps = [
+        {
+          tool: 'memory_namespace',
+          params: {
+            action: 'create',
+            namespace: swarmId,
+            maxSize: config.memorySize || 100,
+          },
+        },
+        { tool: 'neural_status', params: {} },
+        { tool: 'performance_report', params: { format: 'summary' } },
+        { tool: 'features_detect', params: { component: 'swarm' } },
+      ];
+
+      const supportingResults = await this.executeParallel(supportingOps);
+
+      // Store initialization metadata
+      const initTime = Date.now() - startTime;
+      await this.storeMemory(
+        swarmId,
+        'init_performance',
+        {
+          initTime,
+          topology: config.topology || 'hierarchical',
+          maxAgents: config.maxAgents || 8,
+          timestamp: Date.now(),
+        },
+        'metrics',
+      );
+
+      // Store swarm status
+      await this.storeMemory(swarmId, 'status', 'active', 'status');
+
+      // Store swarm config
+      await this.storeMemory(
+        swarmId,
+        'config',
+        {
+          topology: config.topology || 'hierarchical',
+          maxAgents: config.maxAgents || 8,
+          strategy: config.strategy || 'auto',
+          createdAt: Date.now(),
+        },
+        'config',
+      );
+
+      return [swarmInitResult, ...supportingResults];
+    } catch (error) {
+      console.error('Swarm initialization failed:', error);
+      throw error;
+    }
+  }
+
+  /**
+   * Spawn multiple agents in parallel with optimization
+   */
+  async spawnAgents(types, swarmId) {
+    if (!Array.isArray(types) || types.length === 0) {
+      return [];
+    }
+
+    const startTime = Date.now();
+
+    // Optimize agent spawning by grouping similar types
+    const groupedTypes = this._groupAgentTypes(types);
+    const allResults = [];
+
+    try {
+      // Spawn each group in parallel
+      for (const group of groupedTypes) {
+        const batch = group.map((type) => ({
+          tool: 'agent_spawn',
+          params: {
+            type,
+            swarmId,
+            timestamp: Date.now(),
+            batchId: `batch-${Date.now()}-${Math.random().toString(36).substr(2, 9)}`,
+          },
+        }));
+
+        const groupResults = await this.executeParallel(batch);
+        allResults.push(...groupResults);
+
+        // Store agent information in memory
+        for (const result of groupResults) {
+          if (result && result.agentId && !result.error) {
+            await this.storeMemory(
+              swarmId,
+              `agent-${result.agentId}`,
+              {
+                id: result.agentId,
+                type: result.type,
+                status: result.status || 'active',
+                createdAt: Date.now(),
+              },
+              'agent',
+            );
+          }
+        }
+      }
+
+      // Track spawn performance
+      const spawnTime = Date.now() - startTime;
+      this._trackSpawnPerformance(types.length, spawnTime);
+
+      return allResults;
+    } catch (error) {
+      console.error('Agent spawning failed:', error);
+      throw error;
+    }
+  }
+
+  /**
+   * Group agent types for optimized spawning
+   */
+  _groupAgentTypes(types) {
+    // Group complementary agent types that work well together
+    const groups = {
+      development: ['coder', 'architect', 'reviewer'],
+      analysis: ['researcher', 'analyst', 'optimizer'],
+      quality: ['tester', 'documenter'],
+      coordination: ['coordinator'],
+    };
+
+    const result = [];
+    const remaining = [...types];
+
+    // Create groups of complementary agents
+    Object.values(groups).forEach((groupTypes) => {
+      const groupAgents = remaining.filter((type) => groupTypes.includes(type));
+      if (groupAgents.length > 0) {
+        result.push(groupAgents);
+        groupAgents.forEach((type) => {
+          const index = remaining.indexOf(type);
+          if (index > -1) remaining.splice(index, 1);
+        });
+      }
+    });
+
+    // Add remaining agents as individual groups
+    remaining.forEach((type) => result.push([type]));
+
+    return result;
+  }
+
+  /**
+   * Track agent spawn performance
+   */
+  _trackSpawnPerformance(agentCount, spawnTime) {
+    if (!this.spawnStats) {
+      this.spawnStats = {
+        totalSpawns: 0,
+        totalAgents: 0,
+        totalTime: 0,
+        avgTimePerAgent: 0,
+        bestTime: Infinity,
+        worstTime: 0,
+      };
+    }
+
+    this.spawnStats.totalSpawns++;
+    this.spawnStats.totalAgents += agentCount;
+    this.spawnStats.totalTime += spawnTime;
+    this.spawnStats.avgTimePerAgent = this.spawnStats.totalTime / this.spawnStats.totalAgents;
+    this.spawnStats.bestTime = Math.min(this.spawnStats.bestTime, spawnTime);
+    this.spawnStats.worstTime = Math.max(this.spawnStats.worstTime, spawnTime);
+  }
+
+  /**
+   * Store data in collective memory (REAL IMPLEMENTATION)
+   */
+  async storeMemory(swarmId, key, value, type = 'knowledge') {
+    try {
+      // Don't reinitialize if we already have storage
+      if (!this.memoryDb && !this.memoryStore) {
+        await this.initializeMemoryStorage();
+      }
+
+      const timestamp = Date.now();
+      const valueStr = typeof value === 'string' ? value : JSON.stringify(value);
+
+      if (this.memoryDb) {
+        // SQLite storage
+        const stmt = this.memoryDb.prepare(`
+          INSERT OR REPLACE INTO memories (namespace, key, value, type, timestamp)
+          VALUES (?, ?, ?, ?, ?)
+        `);
+
+        const result = stmt.run(swarmId, key, valueStr, type, timestamp);
+
+        return {
+          success: true,
+          action: 'store',
+          namespace: swarmId,
+          key,
+          type,
+          timestamp,
+          id: result.lastInsertRowid,
+        };
+      } else {
+        // Fallback in-memory storage
+        const memoryKey = `${swarmId}:${key}`;
+        this.memoryStore.set(memoryKey, {
+          namespace: swarmId,
+          key,
+          value: valueStr,
+          type,
+          timestamp,
+        });
+
+        return {
+          success: true,
+          action: 'store',
+          namespace: swarmId,
+          key,
+          type,
+          timestamp,
+        };
+      }
+    } catch (error) {
+      console.error('Error storing memory:', error);
+      throw error;
+    }
+  }
+
+  /**
+   * Retrieve data from collective memory (REAL IMPLEMENTATION)
+   */
+  async retrieveMemory(swarmId, key) {
+    try {
+      // Don't reinitialize if we already have storage
+      if (!this.memoryDb && !this.memoryStore) {
+        await this.initializeMemoryStorage();
+      }
+
+      if (this.memoryDb) {
+        // SQLite retrieval
+        const stmt = this.memoryDb.prepare(`
+          SELECT * FROM memories WHERE namespace = ? AND key = ?
+        `);
+
+        const row = stmt.get(swarmId, key);
+        if (row) {
+          try {
+            return {
+              ...row,
+              value: JSON.parse(row.value),
+            };
+          } catch {
+            return row;
+          }
+        }
+      } else {
+        // Fallback in-memory retrieval
+        const memoryKey = `${swarmId}:${key}`;
+        const memory = this.memoryStore.get(memoryKey);
+        if (memory) {
+          try {
+            return {
+              ...memory,
+              value: JSON.parse(memory.value),
+            };
+          } catch {
+            return memory;
+          }
+        }
+      }
+
+      return null;
+    } catch (error) {
+      console.error('Error retrieving memory:', error);
+      throw error;
+    }
+  }
+
+  /**
+   * Search collective memory (REAL IMPLEMENTATION)
+   */
+  async searchMemory(swarmId, pattern) {
+    try {
+      // Don't reinitialize if we already have storage
+      if (!this.memoryDb && !this.memoryStore) {
+        await this.initializeMemoryStorage();
+      }
+
+      let results = [];
+
+      if (this.memoryDb) {
+        // SQLite search
+        let query, params;
+
+        if (pattern && pattern.trim()) {
+          // Search with pattern
+          query = `
+            SELECT * FROM memories 
+            WHERE namespace = ? AND (key LIKE ? OR value LIKE ? OR type LIKE ?)
+            ORDER BY timestamp DESC
+            LIMIT 50
+          `;
+          const searchPattern = `%${pattern}%`;
+          params = [swarmId, searchPattern, searchPattern, searchPattern];
+        } else {
+          // Get all memories for namespace
+          query = `
+            SELECT * FROM memories 
+            WHERE namespace = ?
+            ORDER BY timestamp DESC
+            LIMIT 50
+          `;
+          params = [swarmId];
+        }
+
+        const stmt = this.memoryDb.prepare(query);
+        results = stmt.all(...params);
+
+        // Parse JSON values where possible
+        results = results.map((row) => {
+          try {
+            return {
+              ...row,
+              value: JSON.parse(row.value),
+            };
+          } catch {
+            return row;
+          }
+        });
+      } else {
+        // Fallback in-memory search
+        for (const [memKey, memory] of this.memoryStore) {
+          if (memory.namespace === swarmId) {
+            if (
+              !pattern ||
+              memory.key.includes(pattern) ||
+              memory.value.includes(pattern) ||
+              memory.type.includes(pattern)
+            ) {
+              try {
+                results.push({
+                  ...memory,
+                  value: JSON.parse(memory.value),
+                });
+              } catch {
+                results.push(memory);
+              }
+            }
+          }
+        }
+
+        // Sort by timestamp descending
+        results.sort((a, b) => b.timestamp - a.timestamp);
+        results = results.slice(0, 50);
+      }
+
+      return {
+        success: true,
+        namespace: swarmId,
+        pattern: pattern || '',
+        total: results.length,
+        results: results,
+      };
+    } catch (error) {
+      console.error('Error searching memory:', error);
+      throw error;
+    }
+  }
+
+  /**
+   * Orchestrate task with monitoring and optimization
+   */
+  async orchestrateTask(task, strategy = 'parallel', metadata = {}) {
+    const taskId = metadata.taskId || `task-${Date.now()}`;
+    const swarmId = metadata.swarmId || 'default-swarm';
+    const complexity = metadata.complexity || 'medium';
+
+    // Store task information
+    await this.storeMemory(
+      swarmId,
+      `task-${taskId}`,
+      {
+        id: taskId,
+        task,
+        strategy,
+        status: 'pending',
+        priority: metadata.priority || 5,
+        complexity,
+        createdAt: Date.now(),
+      },
+      'task',
+    );
+
+    // Adjust monitoring frequency based on task complexity
+    const monitoringInterval =
+      {
+        low: 10000,
+        medium: 5000,
+        high: 2000,
+      }[complexity] || 5000;
+
+    const batch = [
+      {
+        tool: 'task_orchestrate',
+        params: {
+          task,
+          strategy,
+          taskId,
+          priority: metadata.priority || 5,
+          estimatedDuration: metadata.estimatedDuration || 30000,
+        },
+      },
+      {
+        tool: 'swarm_monitor',
+        params: {
+          interval: monitoringInterval,
+          taskId,
+          metrics: ['performance', 'progress', 'bottlenecks'],
+        },
+      },
+      // Add performance tracking for high-priority tasks
+      ...(metadata.priority > 7
+        ? [
+            {
+              tool: 'performance_report',
+              params: { format: 'detailed', taskId },
+            },
+          ]
+        : []),
+    ];
+
+    const results = await this.executeParallel(batch);
+
+    // Update task status
+    await this.storeMemory(
+      swarmId,
+      `task-${taskId}`,
+      {
+        id: taskId,
+        task,
+        strategy,
+        status: 'in_progress',
+        priority: metadata.priority || 5,
+        complexity,
+        createdAt: Date.now(),
+      },
+      'task',
+    );
+
+    return results;
+  }
+
+  /**
+   * Analyze performance bottlenecks
+   */
+  async analyzePerformance(swarmId) {
+    const batch = [
+      { tool: 'bottleneck_analyze', params: { component: swarmId } },
+      { tool: 'performance_report', params: { format: 'detailed' } },
+      { tool: 'token_usage', params: { operation: swarmId } },
+    ];
+
+    return await this.executeParallel(batch);
+  }
+
+  /**
+   * GitHub integration for code operations
+   */
+  async githubOperations(repo, operation, params = {}) {
+    const githubTools = {
+      analyze: 'github_repo_analyze',
+      pr: 'github_pr_manage',
+      issue: 'github_issue_track',
+      review: 'github_code_review',
+    };
+
+    const tool = githubTools[operation];
+    if (!tool) {
+      throw new Error(`Unknown GitHub operation: ${operation}`);
+    }
+
+    return await this.executeTool(tool, { repo, ...params });
+  }
+
+  /**
+   * Neural network operations
+   */
+  async neuralOperation(operation, params = {}) {
+    const neuralTools = {
+      train: 'neural_train',
+      predict: 'neural_predict',
+      analyze: 'neural_patterns',
+      optimize: 'wasm_optimize',
+    };
+
+    const tool = neuralTools[operation];
+    if (!tool) {
+      throw new Error(`Unknown neural operation: ${operation}`);
+    }
+
+    return await this.executeTool(tool, params);
+  }
+
+  /**
+   * Clean up and destroy swarm
+   */
+  async destroySwarm(swarmId) {
+    const batch = [
+      { tool: 'swarm_destroy', params: { swarmId } },
+      {
+        tool: 'memory_namespace',
+        params: {
+          action: 'delete',
+          namespace: swarmId,
+        },
+      },
+      {
+        tool: 'cache_manage',
+        params: {
+          action: 'clear',
+          key: `swarm-${swarmId}`,
+        },
+      },
+    ];
+
+    return await this.executeParallel(batch);
+  }
+
+  /**
+   * Get real swarm status from memory storage
+   */
+  async getSwarmStatus(params = {}) {
+    try {
+      // Don't reinitialize if we already have storage
+      if (!this.memoryDb && !this.memoryStore) {
+        await this.initializeMemoryStorage();
+      }
+
+      const swarms = [];
+      let activeAgents = 0;
+      let totalTasks = 0;
+      let completedTasks = 0;
+
+      if (this.memoryDb) {
+        // Get all unique swarm namespaces
+        const namespacesQuery = this.memoryDb.prepare(`
+          SELECT DISTINCT namespace FROM memories 
+          WHERE namespace LIKE 'swarm-%' OR namespace LIKE 'hive-%'
+          ORDER BY timestamp DESC
+        `);
+        const namespaces = namespacesQuery.all();
+
+        // For each swarm, gather its information
+        for (const { namespace } of namespaces) {
+          const swarmId = namespace;
+
+          // Get swarm metadata
+          const metadataQuery = this.memoryDb.prepare(`
+            SELECT key, value, type, timestamp FROM memories 
+            WHERE namespace = ? AND (
+              key IN ('init_performance', 'config', 'status', 'agents', 'tasks', 'topology')
+              OR key LIKE 'agent-%'
+              OR key LIKE 'task-%'
+            )
+          `);
+          const swarmData = metadataQuery.all(swarmId);
+
+          // Parse swarm information
+          let swarmInfo = {
+            id: swarmId,
+            name: swarmId,
+            status: 'unknown',
+            agents: 0,
+            tasks: { total: 0, completed: 0, pending: 0, failed: 0 },
+            topology: 'hierarchical',
+            createdAt: null,
+            lastActivity: null,
+            memoryUsage: swarmData.length,
+          };
+
+          // Process swarm data
+          for (const record of swarmData) {
+            try {
+              const value =
+                typeof record.value === 'string' ? JSON.parse(record.value) : record.value;
+
+              switch (record.key) {
+                case 'init_performance':
+                  swarmInfo.createdAt = value.timestamp;
+                  swarmInfo.topology = value.topology || 'hierarchical';
+                  break;
+                case 'status':
+                  swarmInfo.status = value;
+                  break;
+                case 'config':
+                  swarmInfo.topology = value.topology || swarmInfo.topology;
+                  break;
+              }
+
+              // Count agents
+              if (record.key.startsWith('agent-')) {
+                swarmInfo.agents++;
+                activeAgents++;
+              }
+
+              // Count tasks
+              if (record.key.startsWith('task-')) {
+                swarmInfo.tasks.total++;
+                totalTasks++;
+                if (value.status === 'completed') {
+                  swarmInfo.tasks.completed++;
+                  completedTasks++;
+                } else if (value.status === 'failed') {
+                  swarmInfo.tasks.failed++;
+                } else if (value.status === 'pending' || value.status === 'in_progress') {
+                  swarmInfo.tasks.pending++;
+                }
+              }
+
+              // Track last activity
+              if (record.timestamp > (swarmInfo.lastActivity || 0)) {
+                swarmInfo.lastActivity = record.timestamp;
+              }
+            } catch (e) {
+              // Skip invalid JSON values
+            }
+          }
+
+          // Determine swarm status based on activity
+          if (swarmInfo.status === 'unknown') {
+            const now = Date.now();
+            const lastActivityAge = now - (swarmInfo.lastActivity || 0);
+
+            if (lastActivityAge < 60000) {
+              // Active within last minute
+              swarmInfo.status = 'active';
+            } else if (lastActivityAge < 300000) {
+              // Active within last 5 minutes
+              swarmInfo.status = 'idle';
+            } else {
+              swarmInfo.status = 'inactive';
+            }
+          }
+
+          swarms.push(swarmInfo);
+        }
+
+        // Get recent activity logs
+        const activityQuery = this.memoryDb.prepare(`
+          SELECT namespace, key, type, timestamp FROM memories 
+          WHERE (namespace LIKE 'swarm-%' OR namespace LIKE 'hive-%')
+          AND timestamp > ?
+          ORDER BY timestamp DESC
+          LIMIT 10
+        `);
+        const recentActivity = activityQuery.all(Date.now() - 300000); // Last 5 minutes
+
+        return {
+          swarms,
+          activeAgents,
+          totalTasks,
+          completedTasks,
+          pendingTasks: totalTasks - completedTasks,
+          recentActivity: recentActivity.map((r) => ({
+            swarmId: r.namespace,
+            action: r.key,
+            type: r.type,
+            timestamp: r.timestamp,
+          })),
+          summary: {
+            totalSwarms: swarms.length,
+            activeSwarms: swarms.filter((s) => s.status === 'active').length,
+            idleSwarms: swarms.filter((s) => s.status === 'idle').length,
+            inactiveSwarms: swarms.filter((s) => s.status === 'inactive').length,
+          },
+        };
+      } else {
+        // Fallback to in-memory storage
+        const swarmMap = new Map();
+
+        for (const [key, memory] of this.memoryStore) {
+          const namespace = memory.namespace;
+          if (namespace && (namespace.startsWith('swarm-') || namespace.startsWith('hive-'))) {
+            if (!swarmMap.has(namespace)) {
+              swarmMap.set(namespace, {
+                id: namespace,
+                name: namespace,
+                status: 'active',
+                agents: 0,
+                tasks: { total: 0, completed: 0, pending: 0, failed: 0 },
+                memoryUsage: 0,
+              });
+            }
+
+            const swarm = swarmMap.get(namespace);
+            swarm.memoryUsage++;
+
+            if (memory.key.startsWith('agent-')) {
+              swarm.agents++;
+              activeAgents++;
+            }
+
+            if (memory.key.startsWith('task-')) {
+              swarm.tasks.total++;
+              totalTasks++;
+              try {
+                const taskData = JSON.parse(memory.value);
+                if (taskData.status === 'completed') {
+                  swarm.tasks.completed++;
+                  completedTasks++;
+                } else if (taskData.status === 'failed') {
+                  swarm.tasks.failed++;
+                } else if (taskData.status === 'pending' || taskData.status === 'in_progress') {
+                  swarm.tasks.pending++;
+                }
+              } catch (e) {
+                // Skip invalid JSON
+              }
+            }
+          }
+        }
+
+        return {
+          swarms: Array.from(swarmMap.values()),
+          activeAgents,
+          totalTasks,
+          completedTasks,
+          pendingTasks: totalTasks - completedTasks,
+          summary: {
+            totalSwarms: swarmMap.size,
+            activeSwarms: swarmMap.size,
+          },
+        };
+      }
+    } catch (error) {
+      console.error('Error getting swarm status:', error);
+      // Return empty status on error
+      return {
+        swarms: [],
+        activeAgents: 0,
+        totalTasks: 0,
+        completedTasks: 0,
+        pendingTasks: 0,
+        recentActivity: [],
+        summary: {
+          totalSwarms: 0,
+          activeSwarms: 0,
+          idleSwarms: 0,
+          inactiveSwarms: 0,
+        },
+        error: error.message,
+      };
+    }
+  }
+}
+
+// Export tool categories for reference
+export { MCP_TOOLS };