claude-flow-novice 1.2.1 → 1.3.1

package/src/cli/simple-commands/init/templates/enhanced-templates.js

@@ -0,0 +1,2347 @@
+// enhanced-templates.js - Generate Claude Flow v2.0.0 enhanced templates
+import { readFileSync } from 'fs';
+import { dirname, join } from 'path';
+import { fileURLToPath } from 'url';
+
+const __dirname = dirname(fileURLToPath(import.meta.url));
+
+// Load template files
+const loadTemplate = (filename) => {
+  try {
+    return readFileSync(join(__dirname, filename), 'utf8');
+  } catch (error) {
+    // Silently fall back to hardcoded templates if files not found
+    // This handles npm packaging scenarios where template files may not be included
+    return null;
+  }
+};
+
+export function createEnhancedClaudeMd() {
+  const template = loadTemplate('CLAUDE.md');
+  if (!template) {
+    // Fallback to hardcoded if template file not found
+    return createEnhancedClaudeMdFallback();
+  }
+  return template;
+}
+
+export function createEnhancedSettingsJson() {
+  const template = loadTemplate('settings.json');
+  if (!template) {
+    return createEnhancedSettingsJsonFallback();
+  }
+  return template;
+}
+
+export function createWrapperScript(type = 'unix') {
+  // For unix, use the universal wrapper that works in both CommonJS and ES modules
+  if (type === 'unix') {
+    const universalTemplate = loadTemplate('claude-flow-universal');
+    if (universalTemplate) {
+      return universalTemplate;
+    }
+  }
+
+  const filename =
+    type === 'unix' ? 'claude-flow' : type === 'windows' ? 'claude-flow.bat' : 'claude-flow.ps1';
+
+  const template = loadTemplate(filename);
+  if (!template) {
+    return createWrapperScriptFallback(type);
+  }
+  return template;
+}
+
+export function createCommandDoc(category, command) {
+  const template = loadTemplate(`commands/${category}/${command}.md`);
+  if (!template) {
+    // Silently fall back to generated documentation
+    return createCommandDocFallback(category, command);
+  }
+  return template;
+}
+
+// Generate command documentation fallbacks
+function createCommandDocFallback(category, command) {
+  const docs = {
+    analysis: {
+      'bottleneck-detect': `# bottleneck-detect
+
+Automatically detect performance bottlenecks in your swarm operations.
+
+## Usage
+\`\`\`bash
+npx claude-flow analysis bottleneck-detect [options]
+\`\`\`
+
+## Options
+- \`--swarm-id <id>\` - Target specific swarm
+- \`--threshold <ms>\` - Performance threshold (default: 1000ms)
+- \`--export <file>\` - Export results to file
+
+## Examples
+\`\`\`bash
+# Detect bottlenecks in current swarm
+npx claude-flow analysis bottleneck-detect
+
+# Set custom threshold
+npx claude-flow analysis bottleneck-detect --threshold 500
+
+# Export results
+npx claude-flow analysis bottleneck-detect --export bottlenecks.json
+\`\`\`
+`,
+      'token-usage': `# token-usage
+
+Analyze token usage patterns and optimize for efficiency.
+
+## Usage
+\`\`\`bash
+npx claude-flow analysis token-usage [options]
+\`\`\`
+
+## Options
+- \`--period <time>\` - Analysis period (1h, 24h, 7d, 30d)
+- \`--by-agent\` - Break down by agent
+- \`--by-operation\` - Break down by operation type
+
+## Examples
+\`\`\`bash
+# Last 24 hours token usage
+npx claude-flow analysis token-usage --period 24h
+
+# By agent breakdown
+npx claude-flow analysis token-usage --by-agent
+
+# Export detailed report
+npx claude-flow analysis token-usage --period 7d --export tokens.csv
+\`\`\`
+`,
+      'performance-report': `# performance-report
+
+Generate comprehensive performance reports for swarm operations.
+
+## Usage
+\`\`\`bash
+npx claude-flow analysis performance-report [options]
+\`\`\`
+
+## Options
+- \`--format <type>\` - Report format (json, html, markdown)
+- \`--include-metrics\` - Include detailed metrics
+- \`--compare <id>\` - Compare with previous swarm
+
+## Examples
+\`\`\`bash
+# Generate HTML report
+npx claude-flow analysis performance-report --format html
+
+# Compare swarms
+npx claude-flow analysis performance-report --compare swarm-123
+
+# Full metrics report
+npx claude-flow analysis performance-report --include-metrics --format markdown
+\`\`\`
+`,
+    },
+    automation: {
+      'auto-agent': `# auto-agent
+
+Automatically assign agents based on task analysis.
+
+## Usage
+\`\`\`bash
+npx claude-flow automation auto-agent [options]
+\`\`\`
+
+## Options
+- \`--task <description>\` - Task to analyze
+- \`--max-agents <n>\` - Maximum agents to spawn
+- \`--strategy <type>\` - Assignment strategy
+
+## Examples
+\`\`\`bash
+# Auto-assign for task
+npx claude-flow automation auto-agent --task "Build REST API"
+
+# Limit agents
+npx claude-flow automation auto-agent --task "Fix bugs" --max-agents 3
+
+# Use specific strategy
+npx claude-flow automation auto-agent --strategy specialized
+\`\`\`
+`,
+      'smart-spawn': `# smart-spawn
+
+Intelligently spawn agents based on workload analysis.
+
+## Usage
+\`\`\`bash
+npx claude-flow automation smart-spawn [options]
+\`\`\`
+
+## Options
+- \`--analyze\` - Analyze before spawning
+- \`--threshold <n>\` - Spawn threshold
+- \`--topology <type>\` - Preferred topology
+
+## Examples
+\`\`\`bash
+# Smart spawn with analysis
+npx claude-flow automation smart-spawn --analyze
+
+# Set spawn threshold
+npx claude-flow automation smart-spawn --threshold 5
+
+# Force topology
+npx claude-flow automation smart-spawn --topology hierarchical
+\`\`\`
+`,
+      'workflow-select': `# workflow-select
+
+Automatically select optimal workflow based on task type.
+
+## Usage
+\`\`\`bash
+npx claude-flow automation workflow-select [options]
+\`\`\`
+
+## Options
+- \`--task <description>\` - Task description
+- \`--constraints <list>\` - Workflow constraints
+- \`--preview\` - Preview without executing
+
+## Examples
+\`\`\`bash
+# Select workflow for task
+npx claude-flow automation workflow-select --task "Deploy to production"
+
+# With constraints
+npx claude-flow automation workflow-select --constraints "no-downtime,rollback"
+
+# Preview mode
+npx claude-flow automation workflow-select --task "Database migration" --preview
+\`\`\`
+`,
+    },
+    coordination: {
+      'swarm-init': `# swarm-init
+
+Initialize a new agent swarm with specified topology.
+
+## Usage
+\`\`\`bash
+npx claude-flow swarm init [options]
+\`\`\`
+
+## Options
+- \`--topology <type>\` - Swarm topology (mesh, hierarchical, ring, star)
+- \`--max-agents <n>\` - Maximum number of agents
+- \`--strategy <type>\` - Execution strategy (parallel, sequential, adaptive)
+
+## Examples
+\`\`\`bash
+# Initialize hierarchical swarm
+npx claude-flow swarm init --topology hierarchical
+
+# With agent limit
+npx claude-flow swarm init --topology mesh --max-agents 8
+
+# Parallel execution
+npx claude-flow swarm init --strategy parallel
+\`\`\`
+`,
+      'agent-spawn': `# agent-spawn
+
+Spawn a new agent in the current swarm.
+
+## Usage
+\`\`\`bash
+npx claude-flow agent spawn [options]
+\`\`\`
+
+## Options
+- \`--type <type>\` - Agent type (coder, researcher, analyst, tester, coordinator)
+- \`--name <name>\` - Custom agent name
+- \`--skills <list>\` - Specific skills (comma-separated)
+
+## Examples
+\`\`\`bash
+# Spawn coder agent
+npx claude-flow agent spawn --type coder
+
+# With custom name
+npx claude-flow agent spawn --type researcher --name "API Expert"
+
+# With specific skills
+npx claude-flow agent spawn --type coder --skills "python,fastapi,testing"
+\`\`\`
+`,
+      'task-orchestrate': `# task-orchestrate
+
+Orchestrate complex tasks across the swarm.
+
+## Usage
+\`\`\`bash
+npx claude-flow task orchestrate [options]
+\`\`\`
+
+## Options
+- \`--task <description>\` - Task description
+- \`--strategy <type>\` - Orchestration strategy
+- \`--priority <level>\` - Task priority (low, medium, high, critical)
+
+## Examples
+\`\`\`bash
+# Orchestrate development task
+npx claude-flow task orchestrate --task "Implement user authentication"
+
+# High priority task
+npx claude-flow task orchestrate --task "Fix production bug" --priority critical
+
+# With specific strategy
+npx claude-flow task orchestrate --task "Refactor codebase" --strategy parallel
+\`\`\`
+`,
+    },
+    github: {
+      'github-swarm': `# github-swarm
+
+Create a specialized swarm for GitHub repository management.
+
+## Usage
+\`\`\`bash
+npx claude-flow github swarm [options]
+\`\`\`
+
+## Options
+- \`--repository <owner/repo>\` - Target repository
+- \`--agents <n>\` - Number of specialized agents
+- \`--focus <area>\` - Focus area (maintenance, features, security)
+
+## Examples
+\`\`\`bash
+# Create GitHub swarm
+npx claude-flow github swarm --repository myorg/myrepo
+
+# With specific focus
+npx claude-flow github swarm --repository myorg/myrepo --focus security
+
+# Custom agent count
+npx claude-flow github swarm --repository myorg/myrepo --agents 6
+\`\`\`
+`,
+      'repo-analyze': `# repo-analyze
+
+Deep analysis of GitHub repository with AI insights.
+
+## Usage
+\`\`\`bash
+npx claude-flow github repo-analyze [options]
+\`\`\`
+
+## Options
+- \`--repository <owner/repo>\` - Repository to analyze
+- \`--deep\` - Enable deep analysis
+- \`--include <areas>\` - Include specific areas (issues, prs, code, commits)
+
+## Examples
+\`\`\`bash
+# Basic analysis
+npx claude-flow github repo-analyze --repository myorg/myrepo
+
+# Deep analysis
+npx claude-flow github repo-analyze --repository myorg/myrepo --deep
+
+# Specific areas
+npx claude-flow github repo-analyze --repository myorg/myrepo --include issues,prs
+\`\`\`
+`,
+      'pr-enhance': `# pr-enhance
+
+AI-powered pull request enhancements.
+
+## Usage
+\`\`\`bash
+npx claude-flow github pr-enhance [options]
+\`\`\`
+
+## Options
+- \`--pr-number <n>\` - Pull request number
+- \`--add-tests\` - Add missing tests
+- \`--improve-docs\` - Improve documentation
+- \`--check-security\` - Security review
+
+## Examples
+\`\`\`bash
+# Enhance PR
+npx claude-flow github pr-enhance --pr-number 123
+
+# Add tests
+npx claude-flow github pr-enhance --pr-number 123 --add-tests
+
+# Full enhancement
+npx claude-flow github pr-enhance --pr-number 123 --add-tests --improve-docs
+\`\`\`
+`,
+      'issue-triage': `# issue-triage
+
+Intelligent issue classification and triage.
+
+## Usage
+\`\`\`bash
+npx claude-flow github issue-triage [options]
+\`\`\`
+
+## Options
+- \`--repository <owner/repo>\` - Target repository
+- \`--auto-label\` - Automatically apply labels
+- \`--assign\` - Auto-assign to team members
+
+## Examples
+\`\`\`bash
+# Triage issues
+npx claude-flow github issue-triage --repository myorg/myrepo
+
+# With auto-labeling
+npx claude-flow github issue-triage --repository myorg/myrepo --auto-label
+
+# Full automation
+npx claude-flow github issue-triage --repository myorg/myrepo --auto-label --assign
+\`\`\`
+`,
+      'code-review': `# code-review
+
+Automated code review with swarm intelligence.
+
+## Usage
+\`\`\`bash
+npx claude-flow github code-review [options]
+\`\`\`
+
+## Options
+- \`--pr-number <n>\` - Pull request to review
+- \`--focus <areas>\` - Review focus (security, performance, style)
+- \`--suggest-fixes\` - Suggest code fixes
+
+## Examples
+\`\`\`bash
+# Review PR
+npx claude-flow github code-review --pr-number 456
+
+# Security focus
+npx claude-flow github code-review --pr-number 456 --focus security
+
+# With fix suggestions
+npx claude-flow github code-review --pr-number 456 --suggest-fixes
+\`\`\`
+`,
+    },
+    hooks: {
+      'pre-task': `# pre-task
+
+Hook executed before task execution.
+
+## Usage
+\`\`\`bash
+npx claude-flow hook pre-task [options]
+\`\`\`
+
+## Options
+- \`--description <text>\` - Task description
+- \`--auto-spawn-agents\` - Automatically spawn required agents
+- \`--load-context\` - Load previous context
+
+## Examples
+\`\`\`bash
+# Basic pre-task hook
+npx claude-flow hook pre-task --description "Building API endpoints"
+
+# With auto-spawn
+npx claude-flow hook pre-task --description "Complex refactoring" --auto-spawn-agents
+
+# Load context
+npx claude-flow hook pre-task --description "Continue feature" --load-context
+\`\`\`
+`,
+      'post-task': `# post-task
+
+Hook executed after task completion.
+
+## Usage
+\`\`\`bash
+npx claude-flow hook post-task [options]
+\`\`\`
+
+## Options
+- \`--task-id <id>\` - Task identifier
+- \`--analyze-performance\` - Analyze task performance
+- \`--update-memory\` - Update swarm memory
+
+## Examples
+\`\`\`bash
+# Basic post-task
+npx claude-flow hook post-task --task-id task-123
+
+# With performance analysis
+npx claude-flow hook post-task --task-id task-123 --analyze-performance
+
+# Update memory
+npx claude-flow hook post-task --task-id task-123 --update-memory
+\`\`\`
+`,
+      'pre-edit': `# pre-edit
+
+Hook executed before file edits.
+
+## Usage
+\`\`\`bash
+npx claude-flow hook pre-edit [options]
+\`\`\`
+
+## Options
+- \`--file <path>\` - File to be edited
+- \`--validate-syntax\` - Validate syntax before edit
+- \`--backup\` - Create backup
+
+## Examples
+\`\`\`bash
+# Pre-edit hook
+npx claude-flow hook pre-edit --file src/api.js
+
+# With validation
+npx claude-flow hook pre-edit --file src/api.js --validate-syntax
+
+# Create backup
+npx claude-flow hook pre-edit --file src/api.js --backup
+\`\`\`
+`,
+      'post-edit': `# post-edit
+
+Hook executed after file edits.
+
+## Usage
+\`\`\`bash
+npx claude-flow hook post-edit [options]
+\`\`\`
+
+## Options
+- \`--file <path>\` - Edited file
+- \`--memory-key <key>\` - Memory storage key
+- \`--format\` - Auto-format code
+
+## Examples
+\`\`\`bash
+# Post-edit hook
+npx claude-flow hook post-edit --file src/api.js
+
+# Store in memory
+npx claude-flow hook post-edit --file src/api.js --memory-key "api-changes"
+
+# With formatting
+npx claude-flow hook post-edit --file src/api.js --format
+\`\`\`
+`,
+      'session-end': `# session-end
+
+Hook executed at session end.
+
+## Usage
+\`\`\`bash
+npx claude-flow hook session-end [options]
+\`\`\`
+
+## Options
+- \`--export-metrics\` - Export session metrics
+- \`--generate-summary\` - Generate session summary
+- \`--persist-state\` - Save session state
+
+## Examples
+\`\`\`bash
+# End session
+npx claude-flow hook session-end
+
+# Export metrics
+npx claude-flow hook session-end --export-metrics
+
+# Full closure
+npx claude-flow hook session-end --export-metrics --generate-summary --persist-state
+\`\`\`
+`,
+    },
+    memory: {
+      'memory-usage': `# memory-usage
+
+Manage persistent memory storage.
+
+## Usage
+\`\`\`bash
+npx claude-flow memory usage [options]
+\`\`\`
+
+## Options
+- \`--action <type>\` - Action (store, retrieve, list, clear)
+- \`--key <key>\` - Memory key
+- \`--value <data>\` - Data to store (JSON)
+
+## Examples
+\`\`\`bash
+# Store memory
+npx claude-flow memory usage --action store --key "project-config" --value '{"api": "v2"}'
+
+# Retrieve memory
+npx claude-flow memory usage --action retrieve --key "project-config"
+
+# List all keys
+npx claude-flow memory usage --action list
+\`\`\`
+`,
+      'memory-persist': `# memory-persist
+
+Persist memory across sessions.
+
+## Usage
+\`\`\`bash
+npx claude-flow memory persist [options]
+\`\`\`
+
+## Options
+- \`--export <file>\` - Export to file
+- \`--import <file>\` - Import from file
+- \`--compress\` - Compress memory data
+
+## Examples
+\`\`\`bash
+# Export memory
+npx claude-flow memory persist --export memory-backup.json
+
+# Import memory
+npx claude-flow memory persist --import memory-backup.json
+
+# Compressed export
+npx claude-flow memory persist --export memory.gz --compress
+\`\`\`
+`,
+      'memory-search': `# memory-search
+
+Search through stored memory.
+
+## Usage
+\`\`\`bash
+npx claude-flow memory search [options]
+\`\`\`
+
+## Options
+- \`--query <text>\` - Search query
+- \`--pattern <regex>\` - Pattern matching
+- \`--limit <n>\` - Result limit
+
+## Examples
+\`\`\`bash
+# Search memory
+npx claude-flow memory search --query "authentication"
+
+# Pattern search
+npx claude-flow memory search --pattern "api-.*"
+
+# Limited results
+npx claude-flow memory search --query "config" --limit 10
+\`\`\`
+`,
+    },
+    monitoring: {
+      'swarm-monitor': `# swarm-monitor
+
+Real-time swarm monitoring.
+
+## Usage
+\`\`\`bash
+npx claude-flow swarm monitor [options]
+\`\`\`
+
+## Options
+- \`--interval <ms>\` - Update interval
+- \`--metrics\` - Show detailed metrics
+- \`--export\` - Export monitoring data
+
+## Examples
+\`\`\`bash
+# Start monitoring
+npx claude-flow swarm monitor
+
+# Custom interval
+npx claude-flow swarm monitor --interval 5000
+
+# With metrics
+npx claude-flow swarm monitor --metrics
+\`\`\`
+`,
+      'agent-metrics': `# agent-metrics
+
+View agent performance metrics.
+
+## Usage
+\`\`\`bash
+npx claude-flow agent metrics [options]
+\`\`\`
+
+## Options
+- \`--agent-id <id>\` - Specific agent
+- \`--period <time>\` - Time period
+- \`--format <type>\` - Output format
+
+## Examples
+\`\`\`bash
+# All agents metrics
+npx claude-flow agent metrics
+
+# Specific agent
+npx claude-flow agent metrics --agent-id agent-001
+
+# Last hour
+npx claude-flow agent metrics --period 1h
+\`\`\`
+`,
+      'real-time-view': `# real-time-view
+
+Real-time view of swarm activity.
+
+## Usage
+\`\`\`bash
+npx claude-flow monitoring real-time-view [options]
+\`\`\`
+
+## Options
+- \`--filter <type>\` - Filter view
+- \`--highlight <pattern>\` - Highlight pattern
+- \`--tail <n>\` - Show last N events
+
+## Examples
+\`\`\`bash
+# Start real-time view
+npx claude-flow monitoring real-time-view
+
+# Filter errors
+npx claude-flow monitoring real-time-view --filter errors
+
+# Highlight pattern
+npx claude-flow monitoring real-time-view --highlight "API"
+\`\`\`
+`,
+    },
+    optimization: {
+      'topology-optimize': `# topology-optimize
+
+Optimize swarm topology for current workload.
+
+## Usage
+\`\`\`bash
+npx claude-flow optimization topology-optimize [options]
+\`\`\`
+
+## Options
+- \`--analyze-first\` - Analyze before optimizing
+- \`--target <metric>\` - Optimization target
+- \`--apply\` - Apply optimizations
+
+## Examples
+\`\`\`bash
+# Analyze and suggest
+npx claude-flow optimization topology-optimize --analyze-first
+
+# Optimize for speed
+npx claude-flow optimization topology-optimize --target speed
+
+# Apply changes
+npx claude-flow optimization topology-optimize --target efficiency --apply
+\`\`\`
+`,
+      'parallel-execute': `# parallel-execute
+
+Execute tasks in parallel for maximum efficiency.
+
+## Usage
+\`\`\`bash
+npx claude-flow optimization parallel-execute [options]
+\`\`\`
+
+## Options
+- \`--tasks <file>\` - Task list file
+- \`--max-parallel <n>\` - Maximum parallel tasks
+- \`--strategy <type>\` - Execution strategy
+
+## Examples
+\`\`\`bash
+# Execute task list
+npx claude-flow optimization parallel-execute --tasks tasks.json
+
+# Limit parallelism
+npx claude-flow optimization parallel-execute --tasks tasks.json --max-parallel 5
+
+# Custom strategy
+npx claude-flow optimization parallel-execute --strategy adaptive
+\`\`\`
+`,
+      'cache-manage': `# cache-manage
+
+Manage operation cache for performance.
+
+## Usage
+\`\`\`bash
+npx claude-flow optimization cache-manage [options]
+\`\`\`
+
+## Options
+- \`--action <type>\` - Action (view, clear, optimize)
+- \`--max-size <mb>\` - Maximum cache size
+- \`--ttl <seconds>\` - Time to live
+
+## Examples
+\`\`\`bash
+# View cache stats
+npx claude-flow optimization cache-manage --action view
+
+# Clear cache
+npx claude-flow optimization cache-manage --action clear
+
+# Set limits
+npx claude-flow optimization cache-manage --max-size 100 --ttl 3600
+\`\`\`
+`,
+    },
+    training: {
+      'neural-train': `# neural-train
+
+Train neural patterns from operations.
+
+## Usage
+\`\`\`bash
+npx claude-flow training neural-train [options]
+\`\`\`
+
+## Options
+- \`--data <source>\` - Training data source
+- \`--model <name>\` - Target model
+- \`--epochs <n>\` - Training epochs
+
+## Examples
+\`\`\`bash
+# Train from recent ops
+npx claude-flow training neural-train --data recent
+
+# Specific model
+npx claude-flow training neural-train --model task-predictor
+
+# Custom epochs
+npx claude-flow training neural-train --epochs 100
+\`\`\`
+`,
+      'pattern-learn': `# pattern-learn
+
+Learn patterns from successful operations.
+
+## Usage
+\`\`\`bash
+npx claude-flow training pattern-learn [options]
+\`\`\`
+
+## Options
+- \`--source <type>\` - Pattern source
+- \`--threshold <score>\` - Success threshold
+- \`--save <name>\` - Save pattern set
+
+## Examples
+\`\`\`bash
+# Learn from all ops
+npx claude-flow training pattern-learn
+
+# High success only
+npx claude-flow training pattern-learn --threshold 0.9
+
+# Save patterns
+npx claude-flow training pattern-learn --save optimal-patterns
+\`\`\`
+`,
+      'model-update': `# model-update
+
+Update neural models with new data.
+
+## Usage
+\`\`\`bash
+npx claude-flow training model-update [options]
+\`\`\`
+
+## Options
+- \`--model <name>\` - Model to update
+- \`--incremental\` - Incremental update
+- \`--validate\` - Validate after update
+
+## Examples
+\`\`\`bash
+# Update all models
+npx claude-flow training model-update
+
+# Specific model
+npx claude-flow training model-update --model agent-selector
+
+# Incremental with validation
+npx claude-flow training model-update --incremental --validate
+\`\`\`
+`,
+    },
+    workflows: {
+      'workflow-create': `# workflow-create
+
+Create reusable workflow templates.
+
+## Usage
+\`\`\`bash
+npx claude-flow workflow create [options]
+\`\`\`
+
+## Options
+- \`--name <name>\` - Workflow name
+- \`--from-history\` - Create from history
+- \`--interactive\` - Interactive creation
+
+## Examples
+\`\`\`bash
+# Create workflow
+npx claude-flow workflow create --name "deploy-api"
+
+# From history
+npx claude-flow workflow create --name "test-suite" --from-history
+
+# Interactive mode
+npx claude-flow workflow create --interactive
+\`\`\`
+`,
+      'workflow-execute': `# workflow-execute
+
+Execute saved workflows.
+
+## Usage
+\`\`\`bash
+npx claude-flow workflow execute [options]
+\`\`\`
+
+## Options
+- \`--name <name>\` - Workflow name
+- \`--params <json>\` - Workflow parameters
+- \`--dry-run\` - Preview execution
+
+## Examples
+\`\`\`bash
+# Execute workflow
+npx claude-flow workflow execute --name "deploy-api"
+
+# With parameters
+npx claude-flow workflow execute --name "test-suite" --params '{"env": "staging"}'
+
+# Dry run
+npx claude-flow workflow execute --name "deploy-api" --dry-run
+\`\`\`
+`,
+      'workflow-export': `# workflow-export
+
+Export workflows for sharing.
+
+## Usage
+\`\`\`bash
+npx claude-flow workflow export [options]
+\`\`\`
+
+## Options
+- \`--name <name>\` - Workflow to export
+- \`--format <type>\` - Export format
+- \`--include-history\` - Include execution history
+
+## Examples
+\`\`\`bash
+# Export workflow
+npx claude-flow workflow export --name "deploy-api"
+
+# As YAML
+npx claude-flow workflow export --name "test-suite" --format yaml
+
+# With history
+npx claude-flow workflow export --name "deploy-api" --include-history
+\`\`\`
+`,
+    },
+    swarm: {
+      swarm: `# swarm
+
+Main swarm orchestration command for Claude Flow.
+
+## Usage
+\`\`\`bash
+npx claude-flow swarm <objective> [options]
+\`\`\`
+
+## Options
+- \`--strategy <type>\` - Execution strategy (research, development, analysis, testing)
+- \`--mode <type>\` - Coordination mode (centralized, distributed, hierarchical, mesh)
+- \`--max-agents <n>\` - Maximum number of agents (default: 5)
+- \`--claude\` - Open Claude Code CLI with swarm prompt
+- \`--parallel\` - Enable parallel execution
+
+## Examples
+\`\`\`bash
+# Basic swarm
+npx claude-flow swarm "Build REST API"
+
+# With strategy
+npx claude-flow swarm "Research AI patterns" --strategy research
+
+# Open in Claude Code
+npx claude-flow swarm "Build API" --claude
+\`\`\`
+`,
+      'swarm-init': `# swarm-init
+
+Initialize a new swarm with specified topology.
+
+## Usage
+\`\`\`bash
+npx claude-flow swarm init [options]
+\`\`\`
+
+## Options
+- \`--topology <type>\` - Swarm topology (mesh, hierarchical, ring, star)
+- \`--max-agents <n>\` - Maximum agents
+- \`--strategy <type>\` - Distribution strategy
+
+## Examples
+\`\`\`bash
+npx claude-flow swarm init --topology mesh
+npx claude-flow swarm init --topology hierarchical --max-agents 8
+\`\`\`
+`,
+      'swarm-spawn': `# swarm-spawn
+
+Spawn agents in the swarm.
+
+## Usage
+\`\`\`bash
+npx claude-flow swarm spawn [options]
+\`\`\`
+
+## Options
+- \`--type <type>\` - Agent type
+- \`--count <n>\` - Number to spawn
+- \`--capabilities <list>\` - Agent capabilities
+
+## Examples
+\`\`\`bash
+npx claude-flow swarm spawn --type coder --count 3
+npx claude-flow swarm spawn --type researcher --capabilities "web-search,analysis"
+\`\`\`
+`,
+    },
+    'hive-mind': {
+      'hive-mind': `# hive-mind
+
+Hive Mind collective intelligence system for advanced swarm coordination.
+
+## Usage
+\`\`\`bash
+npx claude-flow hive-mind [subcommand] [options]
+\`\`\`
+
+## Subcommands
+- \`init\` - Initialize hive mind system
+- \`spawn\` - Spawn hive mind swarm
+- \`status\` - Show hive mind status
+- \`resume\` - Resume paused session
+- \`stop\` - Stop running session
+
+## Examples
+\`\`\`bash
+# Initialize hive mind
+npx claude-flow hive-mind init
+
+# Spawn swarm
+npx claude-flow hive-mind spawn "Build microservices"
+
+# Check status
+npx claude-flow hive-mind status
+\`\`\`
+`,
+      'hive-mind-init': `# hive-mind-init
+
+Initialize the Hive Mind collective intelligence system.
+
+## Usage
+\`\`\`bash
+npx claude-flow hive-mind init [options]
+\`\`\`
+
+## Options
+- \`--force\` - Force reinitialize
+- \`--config <file>\` - Configuration file
+
+## Examples
+\`\`\`bash
+npx claude-flow hive-mind init
+npx claude-flow hive-mind init --force
+\`\`\`
+`,
+      'hive-mind-spawn': `# hive-mind-spawn
+
+Spawn a Hive Mind swarm with queen-led coordination.
+
+## Usage
+\`\`\`bash
+npx claude-flow hive-mind spawn <objective> [options]
+\`\`\`
+
+## Options
+- \`--queen-type <type>\` - Queen type (strategic, tactical, adaptive)
+- \`--max-workers <n>\` - Maximum worker agents
+- \`--consensus <type>\` - Consensus algorithm
+- \`--claude\` - Generate Claude Code spawn commands
+
+## Examples
+\`\`\`bash
+npx claude-flow hive-mind spawn "Build API"
+npx claude-flow hive-mind spawn "Research patterns" --queen-type adaptive
+npx claude-flow hive-mind spawn "Build service" --claude
+\`\`\`
+`,
+    },
+    agents: {
+      'agent-types': `# agent-types
+
+Complete guide to all 54 available agent types in Claude Flow.
+
+## Core Development Agents
+- \`coder\` - Implementation specialist
+- \`reviewer\` - Code quality assurance
+- \`tester\` - Test creation and validation
+- \`planner\` - Strategic planning
+- \`researcher\` - Information gathering
+
+## Swarm Coordination Agents
+- \`hierarchical-coordinator\` - Queen-led coordination
+- \`mesh-coordinator\` - Peer-to-peer networks
+- \`adaptive-coordinator\` - Dynamic topology
+
+## Specialized Agents
+- \`backend-dev\` - API development
+- \`mobile-dev\` - React Native development
+- \`ml-developer\` - Machine learning
+- \`system-architect\` - High-level design
+
+For full list and details:
+\`\`\`bash
+npx claude-flow agents list
+\`\`\`
+`,
+      'agent-capabilities': `# agent-capabilities
+
+Matrix of agent capabilities and their specializations.
+
+## Capability Matrix
+
+| Agent Type | Primary Skills | Best For |
+|------------|---------------|----------|
+| coder | Implementation, debugging | Feature development |
+| researcher | Analysis, synthesis | Requirements gathering |
+| tester | Testing, validation | Quality assurance |
+| architect | Design, planning | System architecture |
+
+## Querying Capabilities
+\`\`\`bash
+# List all capabilities
+npx claude-flow agents capabilities
+
+# For specific agent
+npx claude-flow agents capabilities --type coder
+\`\`\`
+`,
+      'agent-coordination': `# agent-coordination
+
+Coordination patterns for multi-agent collaboration.
+
+## Coordination Patterns
+
+### Hierarchical
+Queen-led with worker specialization
+\`\`\`bash
+npx claude-flow swarm init --topology hierarchical
+\`\`\`
+
+### Mesh
+Peer-to-peer collaboration
+\`\`\`bash
+npx claude-flow swarm init --topology mesh
+\`\`\`
+
+### Adaptive
+Dynamic topology based on workload
+\`\`\`bash
+npx claude-flow swarm init --topology adaptive
+\`\`\`
+
+## Best Practices
+- Use hierarchical for complex projects
+- Use mesh for research tasks
+- Use adaptive for unknown workloads
+`,
+      'agent-spawning': `# agent-spawning
+
+Guide to spawning agents with Claude Code's Task tool.
+
+## Using Claude Code's Task Tool
+
+**CRITICAL**: Always use Claude Code's Task tool for actual agent execution:
+
+\`\`\`javascript
+// Spawn ALL agents in ONE message
+Task("Researcher", "Analyze requirements...", "researcher")
+Task("Coder", "Implement features...", "coder")
+Task("Tester", "Create tests...", "tester")
+\`\`\`
+
+## MCP Coordination Setup (Optional)
+
+MCP tools are ONLY for coordination:
+\`\`\`javascript
+mcp__claude-flow__swarm_init { topology: "mesh" }
+mcp__claude-flow__agent_spawn { type: "researcher" }
+\`\`\`
+
+## Best Practices
+1. Always spawn agents concurrently
+2. Use Task tool for execution
+3. MCP only for coordination
+4. Batch all operations
+`,
+    },
+  };
+
+  return (
+    docs[category]?.[command] ||
+    `# ${command}\n\nCommand documentation for ${command} in category ${category}.\n\nUsage:\n\`\`\`bash\nnpx claude-flow ${category} ${command} [options]\n\`\`\`\n`
+  );
+}
+
+// Command categories and their commands
+export const COMMAND_STRUCTURE = {
+  analysis: ['bottleneck-detect', 'token-usage', 'performance-report'],
+  automation: ['auto-agent', 'smart-spawn', 'workflow-select'],
+  coordination: ['swarm-init', 'agent-spawn', 'task-orchestrate'],
+  github: ['github-swarm', 'repo-analyze', 'pr-enhance', 'issue-triage', 'code-review'],
+  hooks: ['pre-task', 'post-task', 'pre-edit', 'post-edit', 'session-end'],
+  memory: ['memory-usage', 'memory-persist', 'memory-search'],
+  monitoring: ['swarm-monitor', 'agent-metrics', 'real-time-view'],
+  optimization: ['topology-optimize', 'parallel-execute', 'cache-manage'],
+  training: ['neural-train', 'pattern-learn', 'model-update'],
+  workflows: ['workflow-create', 'workflow-execute', 'workflow-export'],
+  swarm: [
+    'swarm',
+    'swarm-init',
+    'swarm-spawn',
+    'swarm-status',
+    'swarm-monitor',
+    'swarm-strategies',
+    'swarm-modes',
+    'swarm-background',
+    'swarm-analysis',
+  ],
+  'hive-mind': [
+    'hive-mind',
+    'hive-mind-init',
+    'hive-mind-spawn',
+    'hive-mind-status',
+    'hive-mind-resume',
+    'hive-mind-stop',
+    'hive-mind-sessions',
+    'hive-mind-consensus',
+    'hive-mind-memory',
+    'hive-mind-metrics',
+    'hive-mind-wizard',
+  ],
+  agents: ['agent-types', 'agent-capabilities', 'agent-coordination', 'agent-spawning'],
+};
+
+// Helper script content
+export function createHelperScript(name) {
+  const scripts = {
+    'setup-mcp.sh': `#!/bin/bash
+# Setup MCP server for Claude Flow
+
+echo "🚀 Setting up Claude Flow MCP server..."
+
+# Check if claude command exists
+if ! command -v claude &> /dev/null; then
+    echo "❌ Error: Claude Code CLI not found"
+    echo "Please install Claude Code first"
+    exit 1
+fi
+
+# Add MCP server
+echo "📦 Adding Claude Flow MCP server..."
+claude mcp add claude-flow npx claude-flow mcp start
+
+echo "✅ MCP server setup complete!"
+echo "🎯 You can now use mcp__claude-flow__ tools in Claude Code"
+`,
+    'quick-start.sh': `#!/bin/bash
+# Quick start guide for Claude Flow
+
+echo "🚀 Claude Flow Quick Start"
+echo "=========================="
+echo ""
+echo "1. Initialize a swarm:"
+echo "   npx claude-flow swarm init --topology hierarchical"
+echo ""
+echo "2. Spawn agents:"
+echo "   npx claude-flow agent spawn --type coder --name \"API Developer\""
+echo ""
+echo "3. Orchestrate tasks:"
+echo "   npx claude-flow task orchestrate --task \"Build REST API\""
+echo ""
+echo "4. Monitor progress:"
+echo "   npx claude-flow swarm monitor"
+echo ""
+echo "📚 For more examples, see .claude/commands/"
+`,
+    'github-setup.sh': `#!/bin/bash
+# Setup GitHub integration for Claude Flow
+
+echo "🔗 Setting up GitHub integration..."
+
+# Check for gh CLI
+if ! command -v gh &> /dev/null; then
+    echo "⚠️  GitHub CLI (gh) not found"
+    echo "Install from: https://cli.github.com/"
+    echo "Continuing without GitHub features..."
+else
+    echo "✅ GitHub CLI found"
+    
+    # Check auth status
+    if gh auth status &> /dev/null; then
+        echo "✅ GitHub authentication active"
+    else
+        echo "⚠️  Not authenticated with GitHub"
+        echo "Run: gh auth login"
+    fi
+fi
+
+echo ""
+echo "📦 GitHub swarm commands available:"
+echo "  - npx claude-flow github swarm"
+echo "  - npx claude-flow repo analyze"
+echo "  - npx claude-flow pr enhance"
+echo "  - npx claude-flow issue triage"
+`,
+    'github-safe.js': `#!/usr/bin/env node
+
+/**
+ * Safe GitHub CLI Helper
+ * Prevents timeout issues when using gh commands with special characters
+ * 
+ * Usage:
+ *   ./github-safe.js issue comment 123 "Message with \`backticks\`"
+ *   ./github-safe.js pr create --title "Title" --body "Complex body"
+ */
+
+import { execSync } from 'child_process';
+import { writeFileSync, unlinkSync } from 'fs';
+import { tmpdir } from 'os';
+import { join } from 'path';
+import { randomBytes } from 'crypto';
+
+const args = process.argv.slice(2);
+
+if (args.length < 2) {
+  console.log(\`
+Safe GitHub CLI Helper
+
+Usage:
+  ./github-safe.js issue comment <number> <body>
+  ./github-safe.js pr comment <number> <body>
+  ./github-safe.js issue create --title <title> --body <body>
+  ./github-safe.js pr create --title <title> --body <body>
+
+This helper prevents timeout issues with special characters like:
+- Backticks in code examples
+- Command substitution \\$(...)
+- Directory paths
+- Special shell characters
+\`);
+  process.exit(1);
+}
+
+const [command, subcommand, ...restArgs] = args;
+
+// Handle commands that need body content
+if ((command === 'issue' || command === 'pr') && 
+    (subcommand === 'comment' || subcommand === 'create')) {
+  
+  let bodyIndex = -1;
+  let body = '';
+  
+  if (subcommand === 'comment' && restArgs.length >= 2) {
+    // Simple format: github-safe.js issue comment 123 "body"
+    body = restArgs[1];
+    bodyIndex = 1;
+  } else {
+    // Flag format: --body "content" 
+    bodyIndex = restArgs.indexOf('--body');
+    if (bodyIndex !== -1 && bodyIndex < restArgs.length - 1) {
+      body = restArgs[bodyIndex + 1];
+    }
+  }
+  
+  if (body) {
+    // Use temporary file for body content
+    const tmpFile = join(tmpdir(), \`gh-body-\${randomBytes(8).toString('hex')}.tmp\`);
+    
+    try {
+      writeFileSync(tmpFile, body, 'utf8');
+      
+      // Build new command with --body-file
+      const newArgs = [...restArgs];
+      if (subcommand === 'comment' && bodyIndex === 1) {
+        // Replace body with --body-file
+        newArgs[1] = '--body-file';
+        newArgs.push(tmpFile);
+      } else if (bodyIndex !== -1) {
+        // Replace --body with --body-file
+        newArgs[bodyIndex] = '--body-file';
+        newArgs[bodyIndex + 1] = tmpFile;
+      }
+      
+      // Execute safely
+      const ghCommand = \`gh \${command} \${subcommand} \${newArgs.join(' ')}\`;
+      console.log(\`Executing: \${ghCommand}\`);
+      
+      const result = execSync(ghCommand, { 
+        stdio: 'inherit',
+        timeout: 30000 // 30 second timeout
+      });
+      
+    } catch (error) {
+      console.error('Error:', error.message);
+      process.exit(1);
+    } finally {
+      // Clean up
+      try {
+        unlinkSync(tmpFile);
+      } catch (e) {
+        // Ignore cleanup errors
+      }
+    }
+  } else {
+    // No body content, execute normally
+    execSync(\`gh \${args.join(' ')}\`, { stdio: 'inherit' });
+  }
+} else {
+  // Other commands, execute normally
+  execSync(\`gh \${args.join(' ')}\`, { stdio: 'inherit' });
+}
+`,
+    'checkpoint-hooks.sh': `#!/bin/bash
+# Checkpoint hook functions for Claude settings.json
+
+# Function to handle pre-edit checkpoints
+pre_edit_checkpoint() {
+    local tool_input="$1"
+    local file=$(echo "$tool_input" | jq -r '.file_path // empty')
+    
+    if [ -n "$file" ]; then
+        local checkpoint_branch="checkpoint/pre-edit-$(date +%Y%m%d-%H%M%S)"
+        local current_branch=$(git branch --show-current)
+        
+        # Create checkpoint
+        git add -A
+        git stash push -m "Pre-edit checkpoint for $file" >/dev/null 2>&1
+        git branch "$checkpoint_branch"
+        
+        # Store metadata
+        mkdir -p .claude/checkpoints
+        cat > ".claude/checkpoints/$(date +%s).json" <<EOF
+{
+  "branch": "$checkpoint_branch",
+  "file": "$file",
+  "timestamp": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
+  "type": "pre-edit",
+  "original_branch": "$current_branch"
+}
+EOF
+        
+        # Restore working directory
+        git stash pop --quiet >/dev/null 2>&1 || true
+        
+        echo "✅ Created checkpoint: $checkpoint_branch for $file"
+    fi
+}
+
+# Function to handle post-edit checkpoints
+post_edit_checkpoint() {
+    local tool_input="$1"
+    local file=$(echo "$tool_input" | jq -r '.file_path // empty')
+    
+    if [ -n "$file" ] && [ -f "$file" ]; then
+        # Check if file was modified - first check if file is tracked
+        if ! git ls-files --error-unmatch "$file" >/dev/null 2>&1; then
+            # File is not tracked, add it first
+            git add "$file"
+        fi
+        
+        # Now check if there are changes
+        if git diff --cached --quiet "$file" 2>/dev/null && git diff --quiet "$file" 2>/dev/null; then
+            echo "ℹ️  No changes to checkpoint for $file"
+        else
+            local tag_name="checkpoint-$(date +%Y%m%d-%H%M%S)"
+            local current_branch=$(git branch --show-current)
+            
+            # Create commit
+            git add "$file"
+            if git commit -m "🔖 Checkpoint: Edit $file
+
+Automatic checkpoint created by Claude
+- File: $file
+- Branch: $current_branch
+- Timestamp: $(date -u +%Y-%m-%dT%H:%M:%SZ)
+
+[Auto-checkpoint]" --quiet; then
+                # Create tag only if commit succeeded
+                git tag -a "$tag_name" -m "Checkpoint after editing $file"
+                
+                # Store metadata
+                mkdir -p .claude/checkpoints
+                local diff_stats=$(git diff HEAD~1 --stat | tr '\\n' ' ' | sed 's/"/\\\\"/g')
+                cat > ".claude/checkpoints/$(date +%s).json" <<EOF
+{
+  "tag": "$tag_name",
+  "file": "$file",
+  "timestamp": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
+  "type": "post-edit",
+  "branch": "$current_branch",
+  "diff_summary": "$diff_stats"
+}
+EOF
+                
+                echo "✅ Created checkpoint: $tag_name for $file"
+            else
+                echo "ℹ️  No commit created (no changes or commit failed)"
+            fi
+        fi
+    fi
+}
+
+# Function to handle task checkpoints
+task_checkpoint() {
+    local user_prompt="$1"
+    local task=$(echo "$user_prompt" | head -c 100 | tr '\\n' ' ')
+    
+    if [ -n "$task" ]; then
+        local checkpoint_name="task-$(date +%Y%m%d-%H%M%S)"
+        
+        # Commit current state
+        git add -A
+        git commit -m "🔖 Task checkpoint: $task..." --quiet || true
+        
+        # No GitHub release in standard version
+        
+        # Store metadata
+        mkdir -p .claude/checkpoints
+        cat > ".claude/checkpoints/task-$(date +%s).json" <<EOF
+{
+  "checkpoint": "$checkpoint_name",
+  "task": "$task",
+  "timestamp": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
+  "commit": "$(git rev-parse HEAD)"
+}
+EOF
+        
+        echo "✅ Created task checkpoint: $checkpoint_name"
+    fi
+}
+
+# Function to handle session end
+session_end_checkpoint() {
+    local session_id="session-$(date +%Y%m%d-%H%M%S)"
+    local summary_file=".claude/checkpoints/summary-$session_id.md"
+    
+    mkdir -p .claude/checkpoints
+    
+    # Create summary
+    cat > "$summary_file" <<EOF
+# Session Summary - $(date +'%Y-%m-%d %H:%M:%S')
+
+## Checkpoints Created
+$(find .claude/checkpoints -name '*.json' -mtime -1 -exec basename {} \\; | sort)
+
+## Files Modified
+$(git diff --name-only $(git log --format=%H -n 1 --before="1 hour ago" 2>/dev/null) 2>/dev/null || echo "No files tracked")
+
+## Recent Commits
+$(git log --oneline -10 --grep="Checkpoint" || echo "No checkpoint commits")
+
+## Rollback Instructions
+To rollback to a specific checkpoint:
+\\\`\\\`\\\`bash
+# List all checkpoints
+git tag -l 'checkpoint-*' | sort -r
+
+# Rollback to a checkpoint
+git checkout checkpoint-YYYYMMDD-HHMMSS
+
+# Or reset to a checkpoint (destructive)
+git reset --hard checkpoint-YYYYMMDD-HHMMSS
+\\\`\\\`\\\`
+EOF
+    
+    # Create final checkpoint
+    git add -A
+    git commit -m "🏁 Session end checkpoint: $session_id" --quiet || true
+    git tag -a "session-end-$session_id" -m "End of Claude session"
+    
+    echo "✅ Session summary saved to: $summary_file"
+    echo "📌 Final checkpoint: session-end-$session_id"
+}
+
+# Main entry point
+case "$1" in
+    pre-edit)
+        pre_edit_checkpoint "$2"
+        ;;
+    post-edit)
+        post_edit_checkpoint "$2"
+        ;;
+    task)
+        task_checkpoint "$2"
+        ;;
+    session-end)
+        session_end_checkpoint
+        ;;
+    *)
+        echo "Usage: $0 {pre-edit|post-edit|task|session-end} [input]"
+        exit 1
+        ;;
+esac
+`,
+    'checkpoint-manager.sh': `#!/bin/bash
+# Claude Checkpoint Manager
+# Provides easy rollback and management of Claude Code checkpoints
+
+set -e
+
+# Colors
+RED='\\033[0;31m'
+GREEN='\\033[0;32m'
+YELLOW='\\033[1;33m'
+BLUE='\\033[0;34m'
+NC='\\033[0m' # No Color
+
+# Configuration
+CHECKPOINT_DIR=".claude/checkpoints"
+BACKUP_DIR=".claude/backups"
+
+# Help function
+show_help() {
+    cat << EOF
+Claude Checkpoint Manager
+========================
+
+Usage: $0 <command> [options]
+
+Commands:
+  list              List all checkpoints
+  show <id>         Show details of a specific checkpoint
+  rollback <id>     Rollback to a specific checkpoint
+  diff <id>         Show diff since checkpoint
+  clean             Clean old checkpoints (older than 7 days)
+  summary           Show session summary
+  
+Options:
+  --hard            For rollback: use git reset --hard (destructive)
+  --soft            For rollback: use git reset --soft (default)
+  --branch          For rollback: create new branch from checkpoint
+
+Examples:
+  $0 list
+  $0 show checkpoint-20240130-143022
+  $0 rollback checkpoint-20240130-143022 --branch
+  $0 diff session-end-session-20240130-150000
+EOF
+}
+
+# List all checkpoints
+function list_checkpoints() {
+    echo -e "\${BLUE}📋 Available Checkpoints:\${NC}"
+    echo ""
+    
+    # List checkpoint tags
+    echo -e "\${YELLOW}Git Tags:\${NC}"
+    local tags=$(git tag -l 'checkpoint-*' -l 'session-end-*' -l 'task-*' --sort=-creatordate | head -20)
+    if [ -n "$tags" ]; then
+        echo "$tags"
+    else
+        echo "No checkpoint tags found"
+    fi
+    
+    echo ""
+    
+    # List checkpoint branches
+    echo -e "\${YELLOW}Checkpoint Branches:\${NC}"
+    local branches=$(git branch -a | grep "checkpoint/" | sed 's/^[ *]*//')
+    if [ -n "$branches" ]; then
+        echo "$branches"
+    else
+        echo "No checkpoint branches found"
+    fi
+    
+    echo ""
+    
+    # List checkpoint files
+    if [ -d "$CHECKPOINT_DIR" ]; then
+        echo -e "\${YELLOW}Recent Checkpoint Files:\${NC}"
+        find "$CHECKPOINT_DIR" -name "*.json" -type f -printf "%T@ %p\\n" | \\
+            sort -rn | head -10 | cut -d' ' -f2- | xargs -I {} basename {}
+    fi
+}
+
+# Show checkpoint details
+function show_checkpoint() {
+    local checkpoint_id="$1"
+    
+    echo -e "\${BLUE}📍 Checkpoint Details: $checkpoint_id\${NC}"
+    echo ""
+    
+    # Check if it's a tag
+    if git tag -l "$checkpoint_id" | grep -q "$checkpoint_id"; then
+        echo -e "\${YELLOW}Type:\${NC} Git Tag"
+        echo -e "\${YELLOW}Commit:\${NC} $(git rev-list -n 1 "$checkpoint_id")"
+        echo -e "\${YELLOW}Date:\${NC} $(git log -1 --format=%ai "$checkpoint_id")"
+        echo -e "\${YELLOW}Message:\${NC}"
+        git log -1 --format=%B "$checkpoint_id" | sed 's/^/  /'
+        echo ""
+        echo -e "\${YELLOW}Files changed:\${NC}"
+        git diff-tree --no-commit-id --name-status -r "$checkpoint_id" | sed 's/^/  /'
+    # Check if it's a branch
+    elif git branch -a | grep -q "$checkpoint_id"; then
+        echo -e "\${YELLOW}Type:\${NC} Git Branch"
+        echo -e "\${YELLOW}Latest commit:\${NC}"
+        git log -1 --oneline "$checkpoint_id"
+    else
+        echo -e "\${RED}❌ Checkpoint not found: $checkpoint_id\${NC}"
+        exit 1
+    fi
+}
+
+# Rollback to checkpoint
+function rollback_checkpoint() {
+    local checkpoint_id="$1"
+    local mode="$2"
+    
+    echo -e "\${YELLOW}🔄 Rolling back to checkpoint: $checkpoint_id\${NC}"
+    echo ""
+    
+    # Verify checkpoint exists
+    if ! git tag -l "$checkpoint_id" | grep -q "$checkpoint_id" && \\
+       ! git branch -a | grep -q "$checkpoint_id"; then
+        echo -e "\${RED}❌ Checkpoint not found: $checkpoint_id\${NC}"
+        exit 1
+    fi
+    
+    # Create backup before rollback
+    local backup_name="backup-$(date +%Y%m%d-%H%M%S)"
+    echo "Creating backup: $backup_name"
+    git tag "$backup_name" -m "Backup before rollback to $checkpoint_id"
+    
+    case "$mode" in
+        "--hard")
+            echo -e "\${RED}⚠️  Performing hard reset (destructive)\${NC}"
+            git reset --hard "$checkpoint_id"
+            echo -e "\${GREEN}✅ Rolled back to $checkpoint_id (hard reset)\${NC}"
+            ;;
+        "--branch")
+            local branch_name="rollback-$checkpoint_id-$(date +%Y%m%d-%H%M%S)"
+            echo "Creating new branch: $branch_name"
+            git checkout -b "$branch_name" "$checkpoint_id"
+            echo -e "\${GREEN}✅ Created branch $branch_name from $checkpoint_id\${NC}"
+            ;;
+        "--stash"|*)
+            echo "Stashing current changes..."
+            git stash push -m "Stash before rollback to $checkpoint_id"
+            git reset --soft "$checkpoint_id"
+            echo -e "\${GREEN}✅ Rolled back to $checkpoint_id (soft reset)\${NC}"
+            echo "Your changes are stashed. Use 'git stash pop' to restore them."
+            ;;
+    esac
+}
+
+# Show diff since checkpoint
+function diff_checkpoint() {
+    local checkpoint_id="$1"
+    
+    echo -e "\${BLUE}📊 Changes since checkpoint: $checkpoint_id\${NC}"
+    echo ""
+    
+    if git tag -l "$checkpoint_id" | grep -q "$checkpoint_id"; then
+        git diff "$checkpoint_id"
+    elif git branch -a | grep -q "$checkpoint_id"; then
+        git diff "$checkpoint_id"
+    else
+        echo -e "\${RED}❌ Checkpoint not found: $checkpoint_id\${NC}"
+        exit 1
+    fi
+}
+
+# Clean old checkpoints
+function clean_checkpoints() {
+    local days=\${1:-7}
+    
+    echo -e "\${YELLOW}🧹 Cleaning checkpoints older than $days days...\${NC}"
+    echo ""
+    
+    # Clean old checkpoint files
+    if [ -d "$CHECKPOINT_DIR" ]; then
+        find "$CHECKPOINT_DIR" -name "*.json" -type f -mtime +$days -delete
+        echo "✅ Cleaned old checkpoint files"
+    fi
+    
+    # List old tags (but don't delete automatically)
+    echo ""
+    echo "Old checkpoint tags (manual deletion required):"
+    git tag -l 'checkpoint-*' --sort=-creatordate | tail -n +50 || echo "No old tags found"
+}
+
+# Show session summary
+function show_summary() {
+    echo -e "\${BLUE}📊 Session Summary\${NC}"
+    echo ""
+    
+    # Find most recent session summary
+    if [ -d "$CHECKPOINT_DIR" ]; then
+        local latest_summary=$(find "$CHECKPOINT_DIR" -name "summary-*.md" -type f -printf "%T@ %p\\n" | \\
+            sort -rn | head -1 | cut -d' ' -f2-)
+        
+        if [ -n "$latest_summary" ]; then
+            echo -e "\${YELLOW}Latest session summary:\${NC}"
+            cat "$latest_summary"
+        else
+            echo "No session summaries found"
+        fi
+    fi
+}
+
+# Main command handling
+case "$1" in
+    list)
+        list_checkpoints
+        ;;
+    show)
+        if [ -z "$2" ]; then
+            echo -e "\${RED}Error: Please specify a checkpoint ID\${NC}"
+            show_help
+            exit 1
+        fi
+        show_checkpoint "$2"
+        ;;
+    rollback)
+        if [ -z "$2" ]; then
+            echo -e "\${RED}Error: Please specify a checkpoint ID\${NC}"
+            show_help
+            exit 1
+        fi
+        rollback_checkpoint "$2" "$3"
+        ;;
+    diff)
+        if [ -z "$2" ]; then
+            echo -e "\${RED}Error: Please specify a checkpoint ID\${NC}"
+            show_help
+            exit 1
+        fi
+        diff_checkpoint "$2"
+        ;;
+    clean)
+        clean_checkpoints "$2"
+        ;;
+    summary)
+        show_summary
+        ;;
+    help|--help|-h)
+        show_help
+        ;;
+    *)
+        echo -e "\${RED}Error: Unknown command: $1\${NC}"
+        echo ""
+        show_help
+        exit 1
+        ;;
+esac
+`,
+    'standard-checkpoint-hooks.sh': `#!/bin/bash
+# Standard checkpoint hook functions for Claude settings.json (without GitHub features)
+
+# Function to handle pre-edit checkpoints
+pre_edit_checkpoint() {
+    local tool_input="$1"
+    local file=$(echo "$tool_input" | jq -r '.file_path // empty')
+    
+    if [ -n "$file" ]; then
+        local checkpoint_branch="checkpoint/pre-edit-$(date +%Y%m%d-%H%M%S)"
+        local current_branch=$(git branch --show-current)
+        
+        # Create checkpoint
+        git add -A
+        git stash push -m "Pre-edit checkpoint for $file" >/dev/null 2>&1
+        git branch "$checkpoint_branch"
+        
+        # Store metadata
+        mkdir -p .claude/checkpoints
+        cat > ".claude/checkpoints/$(date +%s).json" <<EOF
+{
+  "branch": "$checkpoint_branch",
+  "file": "$file",
+  "timestamp": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
+  "type": "pre-edit",
+  "original_branch": "$current_branch"
+}
+EOF
+        
+        # Restore working directory
+        git stash pop --quiet >/dev/null 2>&1 || true
+        
+        echo "✅ Created checkpoint: $checkpoint_branch for $file"
+    fi
+}
+
+# Function to handle post-edit checkpoints
+post_edit_checkpoint() {
+    local tool_input="$1"
+    local file=$(echo "$tool_input" | jq -r '.file_path // empty')
+    
+    if [ -n "$file" ] && [ -f "$file" ]; then
+        # Check if file was modified - first check if file is tracked
+        if ! git ls-files --error-unmatch "$file" >/dev/null 2>&1; then
+            # File is not tracked, add it first
+            git add "$file"
+        fi
+        
+        # Now check if there are changes
+        if git diff --cached --quiet "$file" 2>/dev/null && git diff --quiet "$file" 2>/dev/null; then
+            echo "ℹ️  No changes to checkpoint for $file"
+        else
+            local tag_name="checkpoint-$(date +%Y%m%d-%H%M%S)"
+            local current_branch=$(git branch --show-current)
+            
+            # Create commit
+            git add "$file"
+            if git commit -m "🔖 Checkpoint: Edit $file
+
+Automatic checkpoint created by Claude
+- File: $file
+- Branch: $current_branch
+- Timestamp: $(date -u +%Y-%m-%dT%H:%M:%SZ)
+
+[Auto-checkpoint]" --quiet; then
+                # Create tag only if commit succeeded
+                git tag -a "$tag_name" -m "Checkpoint after editing $file"
+                
+                # Store metadata
+                mkdir -p .claude/checkpoints
+                local diff_stats=$(git diff HEAD~1 --stat | tr '\\n' ' ' | sed 's/"/\\"/g')
+                cat > ".claude/checkpoints/$(date +%s).json" <<EOF
+{
+  "tag": "$tag_name",
+  "file": "$file",
+  "timestamp": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
+  "type": "post-edit",
+  "branch": "$current_branch",
+  "diff_summary": "$diff_stats"
+}
+EOF
+                
+                echo "✅ Created checkpoint: $tag_name for $file"
+            else
+                echo "ℹ️  No commit created (no changes or commit failed)"
+            fi
+        fi
+    fi
+}
+
+# Function to handle task checkpoints
+task_checkpoint() {
+    local user_prompt="$1"
+    local task=$(echo "$user_prompt" | head -c 100 | tr '\\n' ' ')
+    
+    if [ -n "$task" ]; then
+        local checkpoint_name="task-$(date +%Y%m%d-%H%M%S)"
+        
+        # Commit current state
+        git add -A
+        git commit -m "🔖 Task checkpoint: $task..." --quiet || true
+        
+        # Store metadata
+        mkdir -p .claude/checkpoints
+        cat > ".claude/checkpoints/task-$(date +%s).json" <<EOF
+{
+  "checkpoint": "$checkpoint_name",
+  "task": "$task",
+  "timestamp": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
+  "commit": "$(git rev-parse HEAD)"
+}
+EOF
+        
+        echo "✅ Created task checkpoint: $checkpoint_name"
+    fi
+}
+
+# Function to handle session end
+session_end_checkpoint() {
+    local session_id="session-$(date +%Y%m%d-%H%M%S)"
+    local summary_file=".claude/checkpoints/summary-$session_id.md"
+    
+    mkdir -p .claude/checkpoints
+    
+    # Create summary
+    cat > "$summary_file" <<EOF
+# Session Summary - $(date +'%Y-%m-%d %H:%M:%S')
+
+## Checkpoints Created
+$(find .claude/checkpoints -name '*.json' -mtime -1 -exec basename {} \\; | sort)
+
+## Files Modified
+$(git diff --name-only $(git log --format=%H -n 1 --before="1 hour ago" 2>/dev/null) 2>/dev/null || echo "No files tracked")
+
+## Recent Commits
+$(git log --oneline -10 --grep="Checkpoint" || echo "No checkpoint commits")
+
+## Rollback Instructions
+To rollback to a specific checkpoint:
+\\\`\\\`\\\`bash
+# List all checkpoints
+git tag -l 'checkpoint-*' | sort -r
+
+# Rollback to a checkpoint
+git checkout checkpoint-YYYYMMDD-HHMMSS
+
+# Or reset to a checkpoint (destructive)
+git reset --hard checkpoint-YYYYMMDD-HHMMSS
+\\\`\\\`\\\`
+EOF
+    
+    # Create final checkpoint
+    git add -A
+    git commit -m "🏁 Session end checkpoint: $session_id" --quiet || true
+    git tag -a "session-end-$session_id" -m "End of Claude session"
+    
+    echo "✅ Session summary saved to: $summary_file"
+    echo "📌 Final checkpoint: session-end-$session_id"
+}
+
+# Main entry point
+case "$1" in
+    pre-edit)
+        pre_edit_checkpoint "$2"
+        ;;
+    post-edit)
+        post_edit_checkpoint "$2"
+        ;;
+    task)
+        task_checkpoint "$2"
+        ;;
+    session-end)
+        session_end_checkpoint
+        ;;
+    *)
+        echo "Usage: $0 {pre-edit|post-edit|task|session-end} [input]"
+        exit 1
+        ;;
+esac
+`,
+  };
+
+  return scripts[name] || '';
+}
+
+// Wrapper script fallbacks
+function createWrapperScriptFallback(type) {
+  if (type === 'unix') {
+    // Return the universal ES module compatible wrapper
+    return `#!/usr/bin/env node
+
+/**
+ * Claude Flow CLI - Universal Wrapper
+ * Works in both CommonJS and ES Module projects
+ */
+
+// Use dynamic import to work in both CommonJS and ES modules
+(async () => {
+  const { spawn } = await import('child_process');
+  const { resolve } = await import('path');
+  const { fileURLToPath } = await import('url');
+  
+  try {
+    // Try to use import.meta.url (ES modules)
+    const __filename = fileURLToPath(import.meta.url);
+    const __dirname = resolve(__filename, '..');
+  } catch {
+    // Fallback for CommonJS
+  }
+
+  // Try multiple strategies to find claude-flow
+  const strategies = [
+    // 1. Local node_modules
+    async () => {
+      try {
+        const localPath = resolve(process.cwd(), 'node_modules/.bin/claude-flow');
+        const { existsSync } = await import('fs');
+        if (existsSync(localPath)) {
+          return spawn(localPath, process.argv.slice(2), { stdio: 'inherit' });
+        }
+      } catch {}
+    },
+    
+    // 2. Parent node_modules (monorepo)
+    async () => {
+      try {
+        const parentPath = resolve(process.cwd(), '../node_modules/.bin/claude-flow');
+        const { existsSync } = await import('fs');
+        if (existsSync(parentPath)) {
+          return spawn(parentPath, process.argv.slice(2), { stdio: 'inherit' });
+        }
+      } catch {}
+    },
+    
+    // 3. NPX with latest alpha version (prioritized over global)
+    async () => {
+      return spawn('npx', ['claude-flow@2.0.0-alpha.25', ...process.argv.slice(2)], { stdio: 'inherit' });
+    }
+  ];
+
+  // Try each strategy
+  for (const strategy of strategies) {
+    try {
+      const child = await strategy();
+      if (child) {
+        child.on('exit', (code) => process.exit(code || 0));
+        child.on('error', (err) => {
+          if (err.code !== 'ENOENT') {
+            console.error('Error:', err);
+            process.exit(1);
+          }
+        });
+        return;
+      }
+    } catch {}
+  }
+  
+  console.error('Could not find claude-flow. Please install it with: npm install claude-flow');
+  process.exit(1);
+})();`;
+  } else if (type === 'windows') {
+    return `@echo off
+rem Claude Flow wrapper script for Windows
+
+rem Check if package.json exists in current directory
+if exist "%~dp0package.json" (
+    rem Local development mode
+    if exist "%~dp0src\\cli\\simple-cli.js" (
+        node "%~dp0src\\cli\\simple-cli.js" %*
+    ) else if exist "%~dp0dist\\cli.js" (
+        node "%~dp0dist\\cli.js" %*
+    ) else (
+        echo Error: Could not find Claude Flow CLI files
+        exit /b 1
+    )
+) else (
+    rem Production mode - use npx alpha
+    npx claude-flow@alpha %*
+)`;
+  } else if (type === 'powershell') {
+    return `# Claude Flow wrapper script for PowerShell
+
+$scriptPath = Split-Path -Parent $MyInvocation.MyCommand.Path
+
+if (Test-Path "$scriptPath\\package.json") {
+    # Local development mode
+    if (Test-Path "$scriptPath\\src\\cli\\simple-cli.js") {
+        & node "$scriptPath\\src\\cli\\simple-cli.js" $args
+    } elseif (Test-Path "$scriptPath\\dist\\cli.js") {
+        & node "$scriptPath\\dist\\cli.js" $args
+    } else {
+        Write-Error "Could not find Claude Flow CLI files"
+        exit 1
+    }
+} else {
+    # Production mode - use npx alpha
+    & npx claude-flow@alpha $args
+}`;
+  }
+  return '';
+}
+
+// Fallback functions for when templates can't be loaded
+function createEnhancedClaudeMdFallback() {
+  // Read from the actual template file we created
+  try {
+    return readFileSync(join(__dirname, 'CLAUDE.md'), 'utf8');
+  } catch (error) {
+    // If that fails, return a minimal version
+    return `# Claude Code Configuration for Claude Flow
+
+## 🚀 IMPORTANT: Claude Flow AI-Driven Development
+
+### Claude Code Handles:
+- ✅ **ALL file operations** (Read, Write, Edit, MultiEdit)
+- ✅ **ALL code generation** and development tasks
+- ✅ **ALL bash commands** and system operations
+- ✅ **ALL actual implementation** work
+- ✅ **Project navigation** and code analysis
+
+### Claude Flow MCP Tools Handle:
+- 🧠 **Coordination only** - Orchestrating Claude Code's actions
+- 💾 **Memory management** - Persistent state across sessions
+- 🤖 **Neural features** - Cognitive patterns and learning
+- 📊 **Performance tracking** - Monitoring and metrics
+- 🐝 **Swarm orchestration** - Multi-agent coordination
+- 🔗 **GitHub integration** - Advanced repository management
+
+### ⚠️ Key Principle:
+**MCP tools DO NOT create content or write code.** They coordinate and enhance Claude Code's native capabilities.
+
+## Quick Start
+
+1. Add MCP server: \`claude mcp add claude-flow npx claude-flow mcp start\`
+2. Initialize swarm: \`mcp__claude-flow__swarm_init { topology: "hierarchical" }\`
+3. Spawn agents: \`mcp__claude-flow__agent_spawn { type: "coder" }\`
+4. Orchestrate: \`mcp__claude-flow__task_orchestrate { task: "Build feature" }\`
+
+See full documentation in \`.claude/commands/\`
+`;
+  }
+}
+
+function createEnhancedSettingsJsonFallback() {
+  return JSON.stringify(
+    {
+      env: {
+        CLAUDE_FLOW_AUTO_COMMIT: 'false',
+        CLAUDE_FLOW_AUTO_PUSH: 'false',
+        CLAUDE_FLOW_HOOKS_ENABLED: 'true',
+        CLAUDE_FLOW_TELEMETRY_ENABLED: 'true',
+        CLAUDE_FLOW_REMOTE_EXECUTION: 'true',
+        CLAUDE_FLOW_CHECKPOINTS_ENABLED: 'true',
+      },
+      permissions: {
+        allow: [
+          'Bash(npx claude-flow *)',
+          'Bash(npm run lint)',
+          'Bash(npm run test:*)',
+          'Bash(npm test *)',
+          'Bash(git status)',
+          'Bash(git diff *)',
+          'Bash(git log *)',
+          'Bash(git add *)',
+          'Bash(git commit *)',
+          'Bash(git push)',
+          'Bash(git config *)',
+          'Bash(git tag *)',
+          'Bash(git branch *)',
+          'Bash(git checkout *)',
+          'Bash(git stash *)',
+          'Bash(node *)',
+          'Bash(which *)',
+          'Bash(pwd)',
+          'Bash(ls *)',
+          'Bash(jq *)',
+        ],
+        deny: ['Bash(rm -rf /)', 'Bash(curl * | bash)', 'Bash(wget * | sh)', 'Bash(eval *)'],
+      },
+      enabledMcpjsonServers: ['claude-flow', 'ruv-swarm'],
+      hooks: {
+        PreToolUse: [
+          {
+            matcher: 'Bash',
+            hooks: [
+              {
+                type: 'command',
+                command:
+                  'cat | jq -r \'.tool_input.command // ""\' | xargs -I {} npx claude-flow@alpha hooks pre-command --command "{}" --validate-safety true --prepare-resources true',
+              },
+            ],
+          },
+          {
+            matcher: 'Write|Edit|MultiEdit',
+            hooks: [
+              {
+                type: 'command',
+                command:
+                  'cat | jq -r \'.tool_input.file_path // .tool_input.path // ""\' | xargs -I {} npx claude-flow@alpha hooks pre-edit --file "{}" --auto-assign-agents true --load-context true',
+              },
+              {
+                type: 'command',
+                command: './.claude/helpers/standard-checkpoint-hooks.sh pre-edit "{{tool_input}}"',
+              },
+            ],
+          },
+        ],
+        PostToolUse: [
+          {
+            matcher: 'Bash',
+            hooks: [
+              {
+                type: 'command',
+                command:
+                  'cat | jq -r \'.tool_input.command // ""\' | xargs -I {} npx claude-flow@alpha hooks post-command --command "{}" --track-metrics true --store-results true',
+              },
+            ],
+          },
+          {
+            matcher: 'Write|Edit|MultiEdit',
+            hooks: [
+              {
+                type: 'command',
+                command:
+                  'cat | jq -r \'.tool_input.file_path // .tool_input.path // ""\' | xargs -I {} npx claude-flow@alpha hooks post-edit --file "{}" --format true --update-memory true --train-neural true',
+              },
+              {
+                type: 'command',
+                command:
+                  './.claude/helpers/standard-checkpoint-hooks.sh post-edit "{{tool_input}}"',
+              },
+            ],
+          },
+        ],
+        UserPromptSubmit: [
+          {
+            hooks: [
+              {
+                type: 'command',
+                command: './.claude/helpers/standard-checkpoint-hooks.sh task "{{user_prompt}}"',
+              },
+            ],
+          },
+        ],
+        Stop: [
+          {
+            hooks: [
+              {
+                type: 'command',
+                command:
+                  '/usr/bin/env bash -c \'if command -v npx >/dev/null 2>&1; then npx claude-flow@alpha hooks session-end --generate-summary true --persist-state true --export-metrics true; else echo "⚠️  npx not available, skipping Claude Flow session-end hook"; fi\'',
+              },
+              {
+                type: 'command',
+                command:
+                  '/usr/bin/env bash -c \'if [ -f ./.claude/helpers/standard-checkpoint-hooks.sh ]; then ./.claude/helpers/standard-checkpoint-hooks.sh session-end; else echo "⚠️  Checkpoint hooks not found"; fi\'',
+              },
+            ],
+          },
+        ],
+      },
+      includeCoAuthoredBy: true,
+    },
+    null,
+    2,
+  );
+}