claude-ex 1.4.1 → 1.5.0

package/dist/db/schema.d.ts

@@ -1,5 +1,7 @@
 import Database from 'better-sqlite3';
 export declare function openDatabase(projectRoot: string, work?: boolean): Database.Database;
+export declare function isSqliteCorruptionError(err: unknown): boolean;
+export declare function resetDatabaseFiles(projectRoot: string, work?: boolean): void;
 export interface FileRecord {
     id: number;
     changed: boolean;

package/dist/db/schema.js

@@ -37,6 +37,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.openDatabase = openDatabase;
+exports.isSqliteCorruptionError = isSqliteCorruptionError;
+exports.resetDatabaseFiles = resetDatabaseFiles;
 exports.getOrCreateFile = getOrCreateFile;
 exports.clearFileData = clearFileData;
 exports.insertSymbol = insertSymbol;
@@ -50,6 +52,7 @@ const better_sqlite3_1 = __importDefault(require("better-sqlite3"));
 const path = __importStar(require("path"));
 const fs = __importStar(require("fs"));
 const utils_1 = require("../utils");
+const SCHEMA_VERSION = 2;
 const SCHEMA_SQL = `
 CREATE TABLE IF NOT EXISTS files (
     id INTEGER PRIMARY KEY AUTOINCREMENT,
@@ -155,11 +158,31 @@ CREATE TRIGGER IF NOT EXISTS symbols_au AFTER UPDATE ON symbols BEGIN
     VALUES (new.id, new.name, new.qualified_name, new.signature);
 END;
 `;
+const FTS_ONLY_TRIGGERS_SQL = `
+CREATE TRIGGER IF NOT EXISTS symbols_ai AFTER INSERT ON symbols BEGIN
+    INSERT INTO symbols_fts(rowid, name, qualified_name, signature, docstring, content)
+    VALUES (new.id, new.name, new.qualified_name, new.signature, new.docstring, new.content);
+END;
+
+CREATE TRIGGER IF NOT EXISTS symbols_ad AFTER DELETE ON symbols BEGIN
+    INSERT INTO symbols_fts(symbols_fts, rowid, name, qualified_name, signature, docstring, content)
+    VALUES('delete', old.id, old.name, old.qualified_name, old.signature, old.docstring, old.content);
+END;
+
+CREATE TRIGGER IF NOT EXISTS symbols_au AFTER UPDATE ON symbols BEGIN
+    INSERT INTO symbols_fts(symbols_fts, rowid, name, qualified_name, signature, docstring, content)
+    VALUES('delete', old.id, old.name, old.qualified_name, old.signature, old.docstring, old.content);
+    INSERT INTO symbols_fts(rowid, name, qualified_name, signature, docstring, content)
+    VALUES (new.id, new.name, new.qualified_name, new.signature, new.docstring, new.content);
+END;
+`;
 const INDEXES_SQL = `
 CREATE INDEX IF NOT EXISTS idx_symbols_file ON symbols(file_id);
 CREATE INDEX IF NOT EXISTS idx_symbols_name ON symbols(name);
+CREATE INDEX IF NOT EXISTS idx_symbols_name_nocase ON symbols(name COLLATE NOCASE);
 CREATE INDEX IF NOT EXISTS idx_symbols_kind ON symbols(kind);
 CREATE INDEX IF NOT EXISTS idx_symbols_qualified ON symbols(qualified_name);
+CREATE INDEX IF NOT EXISTS idx_symbols_qualified_nocase ON symbols(qualified_name COLLATE NOCASE);
 CREATE INDEX IF NOT EXISTS idx_symbols_exported ON symbols(exported, file_id);
 CREATE INDEX IF NOT EXISTS idx_edges_to ON edges(to_id, kind);
 CREATE INDEX IF NOT EXISTS idx_edges_from ON edges(from_id, kind);
@@ -189,6 +212,7 @@ function openDatabase(projectRoot, work) {
     const dbPath = path.join(codexDir, 'index.db');
     function initDb() {
         const db = new better_sqlite3_1.default(dbPath);
+        const schemaVersion = db.pragma('user_version', { simple: true });
         for (const pragma of PRAGMAS) {
             db.pragma(pragma.replace('PRAGMA ', ''));
         }
@@ -196,19 +220,26 @@ function openDatabase(projectRoot, work) {
         db.exec(FTS_SQL);
         db.exec(INDEXES_SQL);
         // Trigram table — may fail on older SQLite without trigram tokenizer
+        let hasTrigram = true;
         try {
             db.exec(TRIGRAM_SQL);
         }
-        catch { /* trigram tokenizer not available */ }
-        // Recreate triggers to include trigram sync (DROP + CREATE is safe)
-        db.exec(`
-            DROP TRIGGER IF EXISTS symbols_ai;
-            DROP TRIGGER IF EXISTS symbols_ad;
-            DROP TRIGGER IF EXISTS symbols_au;
-        `);
-        db.exec(TRIGGERS_SQL);
-        // Migrations for existing databases
-        migrateSchema(db);
+        catch {
+            hasTrigram = false;
+        }
+        if (schemaVersion < SCHEMA_VERSION) {
+            // Recreate triggers only during migrations; doing this on every open slows
+            // CLI/MCP startup and can fail when callers only need a read query.
+            db.exec(`
+                DROP TRIGGER IF EXISTS symbols_ai;
+                DROP TRIGGER IF EXISTS symbols_ad;
+                DROP TRIGGER IF EXISTS symbols_au;
+            `);
+            db.exec(hasTrigram ? TRIGGERS_SQL : FTS_ONLY_TRIGGERS_SQL);
+            // Migrations for existing databases
+            migrateSchema(db);
+            db.pragma(`user_version = ${SCHEMA_VERSION}`);
+        }
         return db;
     }
     try {
@@ -216,27 +247,35 @@ function openDatabase(projectRoot, work) {
     }
     catch (err) {
         const code = err.code ?? '';
-        if (code.startsWith('SQLITE_CORRUPT')) {
+        if (isSqliteCorruptionError(err)) {
             // Database is corrupted — delete and recreate from scratch
-            try {
-                fs.unlinkSync(dbPath);
-            }
-            catch { /* already gone */ }
-            // Also remove WAL/SHM sidecar files
-            try {
-                fs.unlinkSync(dbPath + '-wal');
-            }
-            catch { /* ok */ }
-            try {
-                fs.unlinkSync(dbPath + '-shm');
-            }
-            catch { /* ok */ }
+            resetDatabaseFiles(projectRoot, work);
             process.stderr.write(`Warning: corrupted index database deleted, rebuilding...\n`);
             return initDb();
         }
         throw err;
     }
 }
+function isSqliteCorruptionError(err) {
+    const code = err.code ?? '';
+    return code.startsWith('SQLITE_CORRUPT');
+}
+function resetDatabaseFiles(projectRoot, work) {
+    const codexDir = work !== undefined ? (0, utils_1.ensureCodexDir)(projectRoot, work) : (0, utils_1.getCodexDir)(projectRoot);
+    const dbPath = path.join(codexDir, 'index.db');
+    try {
+        fs.unlinkSync(dbPath);
+    }
+    catch { /* already gone */ }
+    try {
+        fs.unlinkSync(dbPath + '-wal');
+    }
+    catch { /* ok */ }
+    try {
+        fs.unlinkSync(dbPath + '-shm');
+    }
+    catch { /* ok */ }
+}
 function migrateSchema(db) {
     // Add columns that may not exist in older databases
     const migrations = [

package/dist/db/schema.js.map

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+{"version":3,"file":"schema.js","sourceRoot":"","sources":["../../src/db/schema.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAwKA,oCAkDC;AAED,0DAGC;AAED,gDAMC;AAmCD,0CAgCC;AAID,sCAmBC;AAkBD,oCAoBC;AAID,gCAEC;AAID,oCAEC;AAID,gDAEC;AAID,sCAQC;AAED,4CAWC;AAED,gCAMC;AA1ZD,oEAAsC;AACtC,2CAA6B;AAC7B,uCAAyB;AACzB,oCAAuD;AAEvD,MAAM,cAAc,GAAG,CAAC,CAAC;AAEzB,MAAM,UAAU,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA8DlB,CAAC;AAEF,MAAM,OAAO,GAAG;;;;;;;CAOf,CAAC;AAEF,MAAM,WAAW,GAAG;;;;;;;CAOnB,CAAC;AAEF,MAAM,YAAY,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;CAyBpB,CAAC;AAEF,MAAM,qBAAqB,GAAG;;;;;;;;;;;;;;;;;CAiB7B,CAAC;AAEF,MAAM,WAAW,GAAG;;;;;;;;;;;;;;;;;;;;;;CAsBnB,CAAC;AAEF,MAAM,OAAO,GAAG;IACZ,2BAA2B;IAC3B,6BAA6B;IAC7B,4BAA4B;IAC5B,0BAA0B;IAC1B,4BAA4B;IAC5B,8BAA8B;CACjC,CAAC;AAEF,SAAgB,YAAY,CAAC,WAAmB,EAAE,IAAc;IAC5D,MAAM,QAAQ,GAAG,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,IAAA,sBAAc,EAAC,WAAW,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,IAAA,sBAAc,EAAC,WAAW,CAAC,CAAC;IACtG,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;IAE/C,SAAS,MAAM;QACX,MAAM,EAAE,GAAG,IAAI,wBAAQ,CAAC,MAAM,CAAC,CAAC;QAChC,MAAM,aAAa,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAW,CAAC;QAE5E,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC3B,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,CAAC;QAC7C,CAAC;QAED,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;QACpB,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QACjB,EAAE,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;QAErB,qEAAqE;QACrE,IAAI,UAAU,GAAG,IAAI,CAAC;QACtB,IAAI,CAAC;YAAC,EAAE,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC;YAAC,UAAU,GAAG,KAAK,CAAC;QAAC,CAAC;QAE3D,IAAI,aAAa,GAAG,cAAc,EAAE,CAAC;YACjC,2EAA2E;YAC3E,oEAAoE;YACpE,EAAE,CAAC,IAAI,CAAC;;;;aAIP,CAAC,CAAC;YACH,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,qBAAqB,CAAC,CAAC;YAE3D,oCAAoC;YACpC,aAAa,CAAC,EAAE,CAAC,CAAC;YAClB,EAAE,CAAC,MAAM,CAAC,kBAAkB,cAAc,EAAE,CAAC,CAAC;QAClD,CAAC;QAED,OAAO,EAAE,CAAC;IACd,CAAC;IAED,IAAI,CAAC;QACD,OAAO,MAAM,EAAE,CAAC;IACpB,CAAC;IAAC,OAAO,GAAY,EAAE,CAAC;QACpB,MAAM,IAAI,GAAI,GAAyB,CAAC,IAAI,IAAI,EAAE,CAAC;QACnD,IAAI,uBAAuB,CAAC,GAAG,CAAC,EAAE,CAAC;YAC/B,2DAA2D;YAC3D,kBAAkB,CAAC,WAAW,EAAE,IAAI,CAAC,CAAC;YACtC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,4DAA4D,CAAC,CAAC;YACnF,OAAO,MAAM,EAAE,CAAC;QACpB,CAAC;QACD,MAAM,GAAG,CAAC;IACd,CAAC;AACL,CAAC;AAED,SAAgB,uBAAuB,CAAC,GAAY;IAChD,MAAM,IAAI,GAAI,GAAyB,CAAC,IAAI,IAAI,EAAE,CAAC;IACnD,OAAO,IAAI,CAAC,UAAU,CAAC,gBAAgB,CAAC,CAAC;AAC7C,CAAC;AAED,SAAgB,kBAAkB,CAAC,WAAmB,EAAE,IAAc;IAClE,MAAM,QAAQ,GAAG,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,IAAA,sBAAc,EAAC,WAAW,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,IAAA,mBAAW,EAAC,WAAW,CAAC,CAAC;IACnG,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;IAC/C,IAAI,CAAC;QAAC,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;IAAC,CAAC;IAAC,MAAM,CAAC,CAAC,kBAAkB,CAAC,CAAC;IAC3D,IAAI,CAAC;QAAC,EAAE,CAAC,UAAU,CAAC,MAAM,GAAG,MAAM,CAAC,CAAC;IAAC,CAAC;IAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,CAAC;IAC1D,IAAI,CAAC;QAAC,EAAE,CAAC,UAAU,CAAC,MAAM,GAAG,MAAM,CAAC,CAAC;IAAC,CAAC;IAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,CAAC;AAC9D,CAAC;AAED,SAAS,aAAa,CAAC,EAAqB;IACxC,oDAAoD;IACpD,MAAM,UAAU,GAAG;QACf,gDAAgD;QAChD,2CAA2C;KAC9C,CAAC;IACF,KAAK,MAAM,GAAG,IAAI,UAAU,EAAE,CAAC;QAC3B,IAAI,CAAC;YAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC,CAAC,2BAA2B,CAAC,CAAC;IAC/D,CAAC;AACL,CAAC;AAOD,MAAM,WAAW,GAAG,IAAI,OAAO,EAAyC,CAAC;AACzE,MAAM,cAAc,GAAG,IAAI,OAAO,EAAyC,CAAC;AAC5E,MAAM,cAAc,GAAG,IAAI,OAAO,EAAyC,CAAC;AAE5E,SAAS,YAAY,CACjB,GAAkC,EAClC,EAAqB,EACrB,GAAW;IAEX,IAAI,IAAI,GAAG,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IACvB,IAAI,CAAC,IAAI,EAAE,CAAC;QACR,IAAI,GAAG,EAAE,CAAC,OAAO,CAAC,GAAG,CAAM,CAAC;QAC5B,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC;IACtB,CAAC;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,SAAgB,eAAe,CAC3B,EAAqB,EACrB,QAAgB,EAChB,IAAY,EACZ,QAAuB,EACvB,SAAiB,EACjB,YAAqB;IAErB,MAAM,GAAG,GAAG,YAAY,CACpB,WAAW,EAAE,EAAE,EACf,mDAAmD,CACtD,CAAC;IACF,MAAM,QAAQ,GAAG,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAqD,CAAC;IAEvF,IAAI,QAAQ,EAAE,CAAC;QACX,IAAI,QAAQ,CAAC,YAAY,KAAK,IAAI,EAAE,CAAC;YACjC,OAAO,EAAE,EAAE,EAAE,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;QAC/C,CAAC;QACD,MAAM,MAAM,GAAG,YAAY,CACvB,cAAc,EAAE,EAAE,EAClB,mHAAmH,CACtH,CAAC;QACF,MAAM,CAAC,GAAG,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,YAAY,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE,IAAI,CAAC,GAAG,EAAE,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC;QAC3F,OAAO,EAAE,EAAE,EAAE,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC;IAC9C,CAAC;IAED,MAAM,MAAM,GAAG,YAAY,CACvB,cAAc,EAAE,EAAE,EAClB,qHAAqH,CACxH,CAAC;IACF,MAAM,MAAM,GAAG,MAAM,CAAC,GAAG,CAAC,QAAQ,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,YAAY,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC;IACvG,OAAO,EAAE,EAAE,EAAE,MAAM,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC;AACjE,CAAC;AAED,MAAM,UAAU,GAAG,IAAI,OAAO,EAA2C,CAAC;AAE1E,SAAgB,aAAa,CAAC,EAAqB,EAAE,MAAc;IAC/D,IAAI,KAAK,GAAG,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IAC/B,IAAI,CAAC,KAAK,EAAE,CAAC;QACT,KAAK,GAAG;YACJ,EAAE,CAAC,OAAO,CAAC,oFAAoF,CAAC;YAChG,EAAE,CAAC,OAAO,CAAC,yFAAyF,CAAC;YACrG,EAAE,CAAC,OAAO,CAAC,sIAAsI,CAAC;YAClJ,EAAE,CAAC,OAAO,CAAC,uCAAuC,CAAC;YACnD,EAAE,CAAC,OAAO,CAAC,2CAA2C,CAA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package/dist/index.js

@@ -71,17 +71,22 @@ program
     .argument('[path]', 'Project directory')
     .option('-v, --verbose', 'Verbose output')
     .option('-w, --work', 'Work mode: store data in .local/ and gitignore all config (nothing committed)')
+    .option('--codex', 'Also register the MCP server with Codex and generate AGENTS.md')
     .description('Index project + install Claude Code config + generate docs')
     .action((pathArg, opts) => {
     const rootDir = resolveRoot(pathArg);
     const dirname = path.basename(rootDir);
     const work = !!opts.work;
+    const codex = !!opts.codex;
     console.log(`Indexing ${dirname}...${work ? ' (work mode — .local/)' : ''}`);
     const stats = (0, indexer_1.indexProject)(rootDir, { verbose: opts.verbose, work });
     console.log(`Indexed ${stats.indexedFiles} files (${stats.skippedFiles} unchanged) in ${(0, utils_1.formatMs)(stats.timeMs)}`);
     console.log(`  ${stats.symbols} symbols, ${stats.edges} edges`);
     console.log('Installing Claude Code config...');
-    (0, installer_1.install)(rootDir, { work });
+    if (codex) {
+        console.log('Registering Codex MCP config...');
+    }
+    (0, installer_1.install)(rootDir, { work, codex });
     if (!work) {
         console.log('Generating CLAUDE.md...');
         (0, claudemd_1.writeClaudeMd)(rootDir);
@@ -92,8 +97,11 @@ program
     console.log('');
     console.log('Setup complete! MCP server will start automatically when you open Claude Code.');
     console.log('Hooks installed: SessionStart, PreToolUse (Write/Edit), PostToolUse (Write/Edit)');
+    if (codex) {
+        console.log('Codex setup complete: registered MCP server "claude-ex" and updated AGENTS.md.');
+    }
     if (work) {
-        console.log('Work mode: .local/, .claude/, .mcp.json are gitignored — nothing committed.');
+        console.log(`Work mode: .local/, .claude/, .mcp.json${codex ? ', AGENTS.md' : ''} are gitignored — nothing committed.`);
     }
 });
 // --- reindex ---
@@ -114,7 +122,7 @@ program
     .description('Re-index a single file')
     .action((file) => {
     const rootDir = requireIndex();
-    (0, indexer_1.reindexFile)(rootDir, file);
+    (0, indexer_1.reindexFile)(rootDir, file, undefined, { force: true });
 });
 // --- search ---
 program
@@ -285,9 +293,11 @@ daemon
 // --- mcp ---
 program
     .command('mcp')
+    .argument('[path]', 'Project directory')
+    .option('--no-watch', 'Disable the MCP file watcher')
     .description('Run as MCP server (stdio, long-lived)')
-    .action(async () => {
-    await (0, mcp_1.runMcpServer)();
+    .action(async (pathArg, opts) => {
+    await (0, mcp_1.runMcpServer)(pathArg, { watch: opts.watch });
 });
 // --- uninstall ---
 program

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/indexer/collector.js

@@ -128,6 +128,6 @@ function collectFiles(rootDir) {
         }
     }
     walk(rootDir);
-    return files;
+    return files.sort();
 }
 //# sourceMappingURL=collector.js.map

package/dist/indexer/collector.js.map

@@ -1 +1 @@
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package/dist/indexer/index.d.ts

@@ -11,4 +11,7 @@ export declare function indexProject(rootDir: string, options?: {
     verbose?: boolean;
     work?: boolean;
 }): IndexStats;
-export declare function reindexFile(rootDir: string, relPath: string, db?: Database.Database): void;
+export interface ReindexFileOptions {
+    force?: boolean;
+}
+export declare function reindexFile(rootDir: string, relPath: string, db?: Database.Database, options?: ReindexFileOptions): void;

package/dist/indexer/index.js

@@ -87,6 +87,18 @@ function getFileMtime(fullPath) {
     }
 }
 function indexProject(rootDir, options) {
+    try {
+        return indexProjectOnce(rootDir, options);
+    }
+    catch (err) {
+        if (!(0, schema_1.isSqliteCorruptionError)(err))
+            throw err;
+        (0, schema_1.resetDatabaseFiles)(rootDir, options?.work);
+        process.stderr.write('Warning: corrupted index database detected during indexing, rebuilding from scratch...\n');
+        return indexProjectOnce(rootDir, options);
+    }
+}
+function indexProjectOnce(rootDir, options) {
     const start = performance.now();
     const db = (0, schema_1.openDatabase)(rootDir, options?.work);
     const files = (0, collector_1.collectFiles)(rootDir);
@@ -98,10 +110,11 @@ function indexProject(rootDir, options) {
     // Track file -> symbol IDs and file -> imported file paths
     const fileSymbolMap = new Map(); // filePath -> (symbolName -> symbolId)
     const fileImportMap = new Map();
+    const fileIds = new Map();
     const validPaths = new Set(files);
-    const lookupFileStmt = db.prepare('SELECT id FROM files WHERE path = ?');
     const lookupExistingSymsStmt = db.prepare('SELECT id, name, qualified_name, exported FROM symbols WHERE file_id = ?');
     const transaction = db.transaction(() => {
+        const changedFiles = [];
         for (const relPath of files) {
             const fullPath = path.join(rootDir, relPath);
             let content;
@@ -117,6 +130,7 @@ function indexProject(rootDir, options) {
             const lineCount = content.split('\n').length;
             const mtime = getFileMtime(fullPath);
             const fileRecord = (0, schema_1.getOrCreateFile)(db, relPath, hash, language, lineCount, mtime);
+            fileIds.set(relPath, fileRecord.id);
             if (!fileRecord.changed) {
                 skippedFiles++;
                 // Still need to track existing symbols for cross-file resolution
@@ -132,11 +146,15 @@ function indexProject(rootDir, options) {
                 fileSymbolMap.set(relPath, symbolMap);
                 continue;
             }
-            (0, schema_1.clearFileData)(db, fileRecord.id);
+            changedFiles.push({ relPath, content, fileId: fileRecord.id });
+        }
+        for (const changedFile of changedFiles) {
+            const { relPath, content, fileId } = changedFile;
+            (0, schema_1.clearFileData)(db, fileId);
             const parsed = (0, parser_1.parseFile)(relPath, content);
             const symbolMap = new Map();
             for (const sym of parsed.symbols) {
-                const symId = (0, schema_1.insertSymbol)(db, fileRecord.id, {
+                const symId = (0, schema_1.insertSymbol)(db, fileId, {
                     name: sym.name,
                     qualifiedName: sym.qualifiedName,
                     kind: sym.kind,
@@ -169,7 +187,7 @@ function indexProject(rootDir, options) {
             for (const reExport of parsed.reExports) {
                 for (const name of reExport.names) {
                     if (!symbolMap.has(name)) {
-                        const symId = (0, schema_1.insertSymbol)(db, fileRecord.id, {
+                        const symId = (0, schema_1.insertSymbol)(db, fileId, {
                             name,
                             kind: 'reexport',
                             lineStart: 0,
@@ -188,15 +206,15 @@ function indexProject(rootDir, options) {
                 if (isPackageImport(imp.source)) {
                     // Third-party import — store in pkg_deps
                     const names = imp.names.length > 0 ? imp.names.join(',') : imp.isDefault ? 'default' : '*';
-                    (0, schema_1.insertPkgDep)(db, fileRecord.id, imp.source, names);
+                    (0, schema_1.insertPkgDep)(db, fileId, imp.source, names);
                     continue;
                 }
                 const resolved = resolveImportPath(rootDir, relPath, imp.source, validPaths);
                 if (resolved) {
-                    const toFile = lookupFileStmt.get(resolved);
-                    if (toFile) {
+                    const toFileId = fileIds.get(resolved);
+                    if (toFileId) {
                         const importName = imp.names.length > 0 ? imp.names.join(',') : '*';
-                        (0, schema_1.insertFileDep)(db, fileRecord.id, toFile.id, 'import', importName);
+                        (0, schema_1.insertFileDep)(db, fileId, toFileId, 'import', importName);
                     }
                     resolvedImports.push({ resolved, names: imp.names });
                 }
@@ -255,7 +273,21 @@ function indexProject(rootDir, options) {
         timeMs: performance.now() - start,
     };
 }
-function reindexFile(rootDir, relPath, db) {
+function reindexFile(rootDir, relPath, db, options) {
+    try {
+        reindexFileOnce(rootDir, relPath, db, options);
+    }
+    catch (err) {
+        if (!(0, schema_1.isSqliteCorruptionError)(err))
+            throw err;
+        if (db)
+            throw err;
+        (0, schema_1.resetDatabaseFiles)(rootDir);
+        process.stderr.write(`Warning: corrupted index database detected while reindexing ${relPath}, rebuilding...\n`);
+        indexProject(rootDir);
+    }
+}
+function reindexFileOnce(rootDir, relPath, db, options) {
     const shouldClose = !db;
     if (!db)
         db = (0, schema_1.openDatabase)(rootDir);
@@ -280,7 +312,7 @@ function reindexFile(rootDir, relPath, db) {
     const lineCount = content.split('\n').length;
     const mtime = getFileMtime(fullPath);
     const fileRecord = (0, schema_1.getOrCreateFile)(db, relPath, hash, language, lineCount, mtime);
-    if (!fileRecord.changed) {
+    if (!fileRecord.changed && !options?.force) {
         if (shouldClose)
             db.close();
         return;

package/dist/indexer/index.js.map

@@ -1 +1 @@
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package/dist/query/engine.d.ts

@@ -79,8 +79,63 @@ export interface FileSymbolResult {
     exported: boolean;
     parameters: string | null;
 }
+export interface FileContextSymbol extends FileSymbolResult {
+    pagerank: number;
+    code?: string | null;
+}
+export interface FileContextImport {
+    file: string;
+    importName: string | null;
+}
+export interface FileContextPackage {
+    package: string;
+    importedNames: string | null;
+}
+export interface FileContextFile {
+    path: string;
+    language: string | null;
+    lineCount: number;
+    symbols: FileContextSymbol[];
+    exports: FileContextSymbol[];
+    imports: FileContextImport[];
+    importedBy: FileContextImport[];
+    packages: FileContextPackage[];
+}
+export interface RelatedFileContext {
+    file: string;
+    score: number;
+    reasons: string[];
+    symbolCount: number;
+    exports: string[];
+}
+export interface FileContextResult {
+    files: FileContextFile[];
+    relatedFiles: RelatedFileContext[];
+}
+export interface TaskContextResult {
+    query: string;
+    topSymbols: SearchResult[];
+    matchedFiles: FileResult[];
+    selectedFiles: string[];
+    fileContext: FileContextResult;
+    notes: string[];
+}
 /** Get all symbols in a specific file */
 export declare function getFileSymbols(db: Database.Database, filePath: string): FileSymbolResult[];
+/** Build a compact, ranked context bundle around one or more files. */
+export declare function getFileContext(db: Database.Database, filePaths: string[], options?: {
+    maxSymbols?: number;
+    maxRelated?: number;
+    includeCode?: boolean;
+}): FileContextResult;
+/** One-shot context builder for AI agents: query -> relevant symbols/files/context. */
+export declare function getTaskContext(db: Database.Database, query: string, options?: {
+    files?: string[];
+    maxSymbols?: number;
+    maxFiles?: number;
+    maxRelated?: number;
+    includeCode?: boolean;
+}): TaskContextResult;
 /** Find symbols by kind (class, function, interface, type, enum, method, variable) */
 export declare function findByKind(db: Database.Database, kind: string, limit?: number): SearchResult[];
 export interface TypeHierarchyResult {
@@ -167,4 +222,16 @@ export declare function getModulesFromRoot(rootDir: string): ModuleResult[];
 export declare function getStatsFromRoot(rootDir: string): Stats;
 export declare function briefFromRoot(rootDir: string): string;
 export declare function preEditContextFromRoot(rootDir: string, filePath: string): string;
+export declare function getFileContextFromRoot(rootDir: string, files: string[], options?: {
+    maxSymbols?: number;
+    maxRelated?: number;
+    includeCode?: boolean;
+}): FileContextResult;
+export declare function getTaskContextFromRoot(rootDir: string, query: string, options?: {
+    files?: string[];
+    maxSymbols?: number;
+    maxFiles?: number;
+    maxRelated?: number;
+    includeCode?: boolean;
+}): TaskContextResult;
 export declare function reviewDiffFromRoot(rootDir: string, target?: string): ReviewDiffResult;