claude-cortex 1.5.2 → 1.6.0

package/dist/__tests__/store.test.js

@@ -4,6 +4,8 @@
  * Tests for core memory operations, salience detection, and decay calculations.
  */
 import { describe, it, expect } from '@jest/globals';
+import { jaccardSimilarity } from '../memory/similarity.js';
+import { cosineSimilarity } from '../embeddings/generator.js';
 describe('Memory Types', () => {
     describe('DEFAULT_CONFIG', () => {
         it('should have sensible default values', async () => {
@@ -318,4 +320,263 @@ describe('Content Truncation', () => {
         expect(longContent.length).toBeGreaterThan(MAX_CONTENT_SIZE);
     });
 });
+describe('Semantic Linking', () => {
+    describe('cosineSimilarity for embedding-based linking', () => {
+        it('should return 1.0 for identical vectors', () => {
+            const a = new Float32Array([1, 2, 3]);
+            const b = new Float32Array([1, 2, 3]);
+            expect(cosineSimilarity(a, b)).toBeCloseTo(1.0, 5);
+        });
+        it('should return 0.0 for orthogonal vectors', () => {
+            const a = new Float32Array([1, 0, 0]);
+            const b = new Float32Array([0, 1, 0]);
+            expect(cosineSimilarity(a, b)).toBeCloseTo(0.0, 5);
+        });
+        it('should return high similarity for similar vectors', () => {
+            const a = new Float32Array([1, 2, 3]);
+            const b = new Float32Array([1.1, 2.1, 3.1]);
+            expect(cosineSimilarity(a, b)).toBeGreaterThan(0.99);
+        });
+    });
+    describe('jaccardSimilarity for FTS fallback linking', () => {
+        it('should link memories with similar content but different tags', () => {
+            // Two memories about the same topic (SQLite performance) but with different tags
+            const memoryA = 'SQLite database performance optimization using WAL mode and busy timeout';
+            const memoryB = 'SQLite performance tuning with WAL journal mode and connection pooling';
+            const similarity = jaccardSimilarity(memoryA, memoryB);
+            // Should exceed the 0.3 threshold for FTS fallback linking
+            expect(similarity).toBeGreaterThanOrEqual(0.3);
+        });
+        it('should not link unrelated memories', () => {
+            const memoryA = 'React component lifecycle hooks and state management';
+            const memoryB = 'PostgreSQL database backup and restore procedures';
+            const similarity = jaccardSimilarity(memoryA, memoryB);
+            // Should be below the 0.3 threshold
+            expect(similarity).toBeLessThan(0.3);
+        });
+        it('should compute correct strength: min(0.7, sim + 0.2)', () => {
+            const memoryA = 'SQLite WAL mode performance optimization database';
+            const memoryB = 'SQLite WAL mode performance tuning database';
+            const sim = jaccardSimilarity(memoryA, memoryB);
+            const strength = Math.min(0.7, sim + 0.2);
+            expect(strength).toBeGreaterThan(0.2);
+            expect(strength).toBeLessThanOrEqual(0.7);
+        });
+    });
+    describe('Search Reinforcement and Co-Search Linking', () => {
+        it('should increase salience after repeated searches', async () => {
+            const { initDatabase, closeDatabase } = await import('../database/init.js');
+            const { addMemory, searchMemories, getMemoryById, deleteMemory } = await import('../memory/store.js');
+            closeDatabase();
+            initDatabase(':memory:');
+            let memoryId;
+            try {
+                const memory = addMemory({
+                    title: 'Unique Reinforcement Test Target',
+                    content: 'This memory is about reinforcement testing with a unique keyword xyzzyplugh',
+                    tags: ['reinforcement-test'],
+                    project: 'test-project',
+                });
+                memoryId = memory.id;
+                const initialSalience = memory.salience;
+                // Search 3 times for this memory
+                for (let i = 0; i < 3; i++) {
+                    await searchMemories({ query: 'xyzzyplugh', project: 'test-project' });
+                }
+                const updated = getMemoryById(memoryId);
+                expect(updated).not.toBeNull();
+                expect(updated.salience).toBeGreaterThan(initialSalience);
+            }
+            finally {
+                if (memoryId) {
+                    try {
+                        deleteMemory(memoryId);
+                    }
+                    catch { /* ignore */ }
+                }
+                closeDatabase();
+            }
+        });
+        it('should link memories that co-appear in search results', async () => {
+            const { initDatabase, closeDatabase } = await import('../database/init.js');
+            const { addMemory, searchMemories, getRelatedMemories, deleteMemory } = await import('../memory/store.js');
+            closeDatabase();
+            initDatabase(':memory:');
+            let idA;
+            let idB;
+            try {
+                const memA = addMemory({
+                    title: 'Co-search Link Memory Alpha',
+                    content: 'Shared topic cosearchunique for linking test alpha variant',
+                    tags: ['cosearch-test'],
+                    project: 'test-project',
+                });
+                idA = memA.id;
+                const memB = addMemory({
+                    title: 'Co-search Link Memory Beta',
+                    content: 'Shared topic cosearchunique for linking test beta variant',
+                    tags: ['cosearch-test'],
+                    project: 'test-project',
+                });
+                idB = memB.id;
+                // Search for a term that matches both
+                await searchMemories({ query: 'cosearchunique', project: 'test-project' });
+                // Verify they got linked
+                const relatedToA = getRelatedMemories(idA);
+                const linkToB = relatedToA.find(r => r.memory.id === idB);
+                expect(linkToB).toBeDefined();
+                if (linkToB) {
+                    expect(linkToB.relationship).toBe('related');
+                    expect(linkToB.strength).toBeGreaterThan(0);
+                }
+            }
+            finally {
+                if (idA) {
+                    try {
+                        deleteMemory(idA);
+                    }
+                    catch { /* ignore */ }
+                }
+                if (idB) {
+                    try {
+                        deleteMemory(idB);
+                    }
+                    catch { /* ignore */ }
+                }
+                closeDatabase();
+            }
+        });
+    });
+    describe('Integration: detectRelationships via addMemory', () => {
+        it('should auto-link related memories with different tags', async () => {
+            const { initDatabase, closeDatabase } = await import('../database/init.js');
+            const { addMemory, getRelatedMemories, deleteMemory } = await import('../memory/store.js');
+            // Close any existing database connection first
+            closeDatabase();
+            // Initialize a fresh test database
+            const testDbPath = ':memory:';
+            initDatabase(testDbPath);
+            let memoryAId;
+            let memoryBId;
+            try {
+                // Create first memory tagged "database"
+                const memoryA = addMemory({
+                    title: 'SQLite Performance Optimization',
+                    content: 'SQLite database performance optimization using WAL mode and busy timeout for concurrent access',
+                    tags: ['database'],
+                    project: 'test-project',
+                });
+                memoryAId = memoryA.id;
+                // Create second memory tagged "backend" with similar content
+                // This triggers detectRelationships internally, which should find memoryA
+                const memoryB = addMemory({
+                    title: 'Backend Database Tuning',
+                    content: 'SQLite performance tuning with WAL journal mode and connection pooling for better throughput',
+                    tags: ['backend'],
+                    project: 'test-project',
+                });
+                memoryBId = memoryB.id;
+                // Wait a bit for async embedding generation (though FTS fallback should work immediately)
+                await new Promise(resolve => setTimeout(resolve, 100));
+                // Verify that memoryB is linked to memoryA
+                const relatedToB = getRelatedMemories(memoryB.id);
+                // Should have at least one link
+                expect(relatedToB.length).toBeGreaterThan(0);
+                // Should contain a link to memoryA
+                const linkToA = relatedToB.find(rel => rel.memory.id === memoryA.id);
+                expect(linkToA).toBeDefined();
+                if (linkToA) {
+                    // Verify the relationship properties
+                    expect(linkToA.relationship).toBe('related');
+                    expect(linkToA.strength).toBeGreaterThan(0);
+                    expect(linkToA.strength).toBeLessThanOrEqual(1);
+                    expect(linkToA.direction).toBe('outgoing');
+                }
+            }
+            finally {
+                // Cleanup: delete test memories
+                if (memoryAId) {
+                    try {
+                        deleteMemory(memoryAId);
+                    }
+                    catch (e) { /* ignore */ }
+                }
+                if (memoryBId) {
+                    try {
+                        deleteMemory(memoryBId);
+                    }
+                    catch (e) { /* ignore */ }
+                }
+                // Close the database connection
+                closeDatabase();
+            }
+        });
+    });
+    describe('enrichMemory', () => {
+        it('should enrich a memory with new related context', async () => {
+            const { initDatabase, closeDatabase } = await import('../database/init.js');
+            const { addMemory, enrichMemory, getMemoryById, deleteMemory } = await import('../memory/store.js');
+            closeDatabase();
+            initDatabase(':memory:');
+            let memoryId;
+            try {
+                const memory = addMemory({
+                    title: 'JWT token authentication',
+                    content: 'We use JWT tokens for authentication in our API server with rate limiting',
+                    category: 'architecture',
+                    tags: ['auth', 'jwt'],
+                    project: 'test-project',
+                    type: 'long_term',
+                });
+                memoryId = memory.id;
+                const result = enrichMemory(memoryId, 'We use JWT tokens for authentication in our API server with rate limiting and also need Redis caching', 'search');
+                expect(result.enriched).toBe(true);
+                const updated = getMemoryById(memoryId);
+                expect(updated).toBeDefined();
+                expect(updated.content).toContain('rate limiting');
+                expect(updated.content).toContain('search:');
+            }
+            finally {
+                if (memoryId) {
+                    try {
+                        deleteMemory(memoryId);
+                    }
+                    catch { /* ignore */ }
+                }
+                closeDatabase();
+            }
+        });
+        it('should reject enrichment when context is too similar', async () => {
+            const { initDatabase, closeDatabase } = await import('../database/init.js');
+            const { addMemory, enrichMemory, deleteMemory } = await import('../memory/store.js');
+            closeDatabase();
+            initDatabase(':memory:');
+            let memoryId;
+            try {
+                const memory = addMemory({
+                    title: 'JWT token authentication',
+                    content: 'We use JWT tokens for authentication with RS256 signing',
+                    category: 'architecture',
+                    tags: ['auth'],
+                    project: 'test-project',
+                    type: 'long_term',
+                });
+                memoryId = memory.id;
+                const result = enrichMemory(memoryId, 'We use JWT tokens for authentication with RS256 signing', 'search');
+                expect(result.enriched).toBe(false);
+                // May fail due to cooldown (shared process state) or similarity
+                expect(result.reason).toMatch(/similar|cooldown/);
+            }
+            finally {
+                if (memoryId) {
+                    try {
+                        deleteMemory(memoryId);
+                    }
+                    catch { /* ignore */ }
+                }
+                closeDatabase();
+            }
+        });
+    });
+});
 //# sourceMappingURL=store.test.js.map

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package/dist/memory/activation.js

@@ -22,7 +22,7 @@ const activationCache = new Map();
 const DECAY_HALF_LIFE_MINUTES = 30; // Activation halves every 30 minutes
 const SPREAD_FACTOR = 0.5; // How much activation spreads (50% of link strength)
 const MAX_SPREAD_DEPTH = 1; // Only spread to direct neighbors (not neighbors of neighbors)
-const MAX_ACTIVATION_BOOST = 0.2; // Cap search boost at 20%
+const MAX_ACTIVATION_BOOST = 0.3; // Cap search boost at 30%
 /**
  * Activate a memory and spread activation to linked memories
  *

package/dist/memory/consolidate.d.ts

@@ -19,8 +19,10 @@ export declare function consolidate(config?: MemoryConfig): ConsolidationResult;
  */
 export declare function enforceMemoryLimits(config?: MemoryConfig): number;
 /**
- * Find and merge similar memories
- * Reduces redundancy while preserving important information
+ * Find and merge similar short-term memories into coherent long-term entries.
+ * Groups memories by project|category, then clusters by Jaccard similarity
+ * on content (0.6 weight) + title (0.4 weight).
+ * Returns count of deleted (merged) memories.
  */
 export declare function mergeSimilarMemories(project?: string, similarityThreshold?: number): number;
 /**

package/dist/memory/consolidate.d.ts.map

@@ -1 +1 @@
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package/dist/memory/consolidate.js

@@ -12,6 +12,8 @@ import { DEFAULT_CONFIG, } from './types.js';
 import { getMemoriesByType, getRecentMemories, promoteMemory, deleteMemory, searchMemories, getMemoryStats, updateDecayScores, } from './store.js';
 import { processDecay, } from './decay.js';
 import { detectContradictions, linkContradictions, } from './contradiction.js';
+import { jaccardSimilarity } from './similarity.js';
+import { pruneActivationCache } from './activation.js';
 /**
  * Run full consolidation process
  * This is like the brain's sleep consolidation - should be run periodically
@@ -51,6 +53,14 @@ export function consolidate(config = DEFAULT_CONFIG) {
         deleted += enforceMemoryLimits(config);
         // Persist updated decay scores for efficient sorting
         updateDecayScores();
+        // Evolve salience based on structural importance
+        let salienceEvolved = 0;
+        try {
+            salienceEvolved = evolveSalience(db);
+        }
+        catch (e) {
+            console.error('[claude-cortex] Salience evolution failed:', e);
+        }
         // ORGANIC FEATURE: Contradiction Detection (Phase 3)
         // Detect and link contradicting memories during consolidation
         let contradictionsFound = 0;
@@ -63,9 +73,52 @@ export function consolidate(config = DEFAULT_CONFIG) {
         catch (e) {
             console.error('[claude-cortex] Contradiction detection failed:', e);
         }
-        return { consolidated, decayed, deleted, contradictionsFound, contradictionsLinked };
+        // Prune activation cache to prevent unbounded growth
+        pruneActivationCache();
+        return { consolidated, decayed, deleted, contradictionsFound, contradictionsLinked, salienceEvolved };
     });
 }
+/**
+ * Adjust salience based on structural importance (link count, contradiction status).
+ * Called during consolidation.
+ */
+function evolveSalience(db) {
+    let updated = 0;
+    // Boost highly-linked memories (hub bonus)
+    const hubs = db.prepare(`
+    SELECT m.id, m.salience,
+      (SELECT COUNT(*) FROM memory_links WHERE source_id = m.id OR target_id = m.id) as link_count
+    FROM memories m
+    WHERE m.type IN ('long_term', 'episodic')
+  `).all();
+    for (const hub of hubs) {
+        if (hub.link_count < 2)
+            continue;
+        const linkBonus = Math.min(0.1, Math.log2(hub.link_count) * 0.03);
+        const newSalience = Math.min(1.0, hub.salience + linkBonus);
+        if (newSalience > hub.salience) {
+            db.prepare('UPDATE memories SET salience = ? WHERE id = ?').run(newSalience, hub.id);
+            updated++;
+        }
+    }
+    // Penalize contradicted memories slightly (both sides)
+    const contradicted = db.prepare(`
+    SELECT DISTINCT source_id, target_id
+    FROM memory_links
+    WHERE relationship = 'contradicts'
+  `).all();
+    for (const pair of contradicted) {
+        for (const id of [pair.source_id, pair.target_id]) {
+            const mem = db.prepare('SELECT salience FROM memories WHERE id = ?').get(id);
+            if (mem && mem.salience > 0.3) {
+                db.prepare('UPDATE memories SET salience = ? WHERE id = ?')
+                    .run(mem.salience - 0.02, id);
+                updated++;
+            }
+        }
+    }
+    return updated;
+}
 /**
  * Enforce maximum memory limits
  * Removes lowest-priority memories when limits are exceeded
@@ -108,46 +161,104 @@ export function enforceMemoryLimits(config = DEFAULT_CONFIG) {
     return deleted;
 }
 /**
- * Find and merge similar memories
- * Reduces redundancy while preserving important information
+ * Find and merge similar short-term memories into coherent long-term entries.
+ * Groups memories by project|category, then clusters by Jaccard similarity
+ * on content (0.6 weight) + title (0.4 weight).
+ * Returns count of deleted (merged) memories.
  */
-export function mergeSimilarMemories(project, similarityThreshold = 0.8) {
-    // Wrap in transaction for atomic merge operations
+export function mergeSimilarMemories(project, similarityThreshold = 0.25) {
     return withTransaction(() => {
         const db = getDatabase();
-        let merged = 0;
-        // Get all memories (optionally filtered by project)
-        let sql = 'SELECT * FROM memories';
+        let deleted = 0;
+        // Step 1: Get all short-term memories, optionally filtered by project
+        let sql = "SELECT * FROM memories WHERE type = 'short_term'";
         const params = [];
         if (project) {
-            sql += ' WHERE project = ?';
+            sql += ' AND project = ?';
             params.push(project);
         }
         sql += ' ORDER BY created_at ASC';
         const memories = db.prepare(sql).all(...params);
-        // Simple similarity check based on title and first 100 chars of content
-        const seen = new Map(); // key -> id of primary memory
-        for (const row of memories) {
-            const key = `${row.title.toLowerCase().trim()}|${row.content.slice(0, 100).toLowerCase()}`;
-            if (seen.has(key)) {
-                // This is a duplicate, merge into the primary
-                const primaryId = seen.get(key);
-                // Boost the primary memory's salience
+        // Step 2: Group by project|category
+        const groups = new Map();
+        for (const mem of memories) {
+            const key = `${mem.project || ''}|${mem.category || ''}`;
+            if (!groups.has(key))
+                groups.set(key, []);
+            groups.get(key).push(mem);
+        }
+        // Step 3: For each group with 2+ members, find clusters
+        for (const [, group] of groups) {
+            if (group.length < 2)
+                continue;
+            // Track which memories have been clustered
+            const clustered = new Set();
+            for (let i = 0; i < group.length; i++) {
+                if (clustered.has(i))
+                    continue;
+                const cluster = [i]; // indices into group
+                const memA = group[i];
+                for (let j = i + 1; j < group.length; j++) {
+                    if (clustered.has(j))
+                        continue;
+                    const memB = group[j];
+                    const contentSim = jaccardSimilarity(memA.content, memB.content);
+                    const titleSim = jaccardSimilarity(memA.title, memB.title);
+                    const combinedSim = contentSim * 0.6 + titleSim * 0.4;
+                    if (combinedSim >= similarityThreshold) {
+                        cluster.push(j);
+                    }
+                }
+                if (cluster.length < 2)
+                    continue;
+                // Mark all as clustered
+                for (const idx of cluster)
+                    clustered.add(idx);
+                // Step 4: Merge cluster
+                // Sort by salience desc, pick highest as base
+                const clusterMems = cluster.map(idx => group[idx]);
+                clusterMems.sort((a, b) => b.salience - a.salience);
+                const base = clusterMems[0];
+                const others = clusterMems.slice(1);
+                // Merge content
+                const bulletPoints = others
+                    .map(m => `- ${m.title}: ${m.content}`)
+                    .join('\n');
+                const mergedContent = `${base.content}\n\nConsolidated context:\n${bulletPoints}`;
+                // Merge tags (union)
+                const allTags = new Set();
+                for (const m of clusterMems) {
+                    try {
+                        const tags = JSON.parse(m.tags || '[]');
+                        for (const t of tags)
+                            allTags.add(t);
+                    }
+                    catch {
+                        // skip invalid tags
+                    }
+                }
+                // Sum access counts
+                const totalAccessCount = clusterMems.reduce((sum, m) => sum + (m.access_count || 0), 0);
+                // New salience: base + 0.1, capped at 1.0
+                const newSalience = Math.min(1.0, base.salience + 0.1);
+                // Update base memory
                 db.prepare(`
           UPDATE memories
-          SET salience = MIN(1.0, salience + 0.1),
-              access_count = access_count + 1
+          SET type = 'long_term',
+              content = ?,
+              tags = ?,
+              salience = ?,
+              access_count = ?
           WHERE id = ?
-        `).run(primaryId);
-                // Delete the duplicate
-                deleteMemory(row.id);
-                merged++;
-            }
-            else {
-                seen.set(key, row.id);
+        `).run(mergedContent, JSON.stringify([...allTags]), newSalience, totalAccessCount, base.id);
+                // Delete others
+                for (const other of others) {
+                    deleteMemory(other.id);
+                    deleted++;
+                }
             }
         }
-        return merged;
+        return deleted;
     });
 }
 /**