claude-cognitive 0.6.2 → 0.6.5

package/README.md

@@ -162,6 +162,34 @@ Each memory bank has personality traits that shape how `reflect()` reasons:
 | literalism | Flexible interpretation | Precise, literal            |
 | empathy    | Fact-focused            | Considers emotional context |
 
+### Gemini Integration (Optional)
+
+If you have the [Gemini CLI](https://github.com/google/gemini-cli) installed, claude-cognitive exposes additional MCP tools for deep code analysis:
+
+| Tool | Purpose |
+|------|---------|
+| `gemini_analyze_code` | Security audits, quality reviews, architecture analysis |
+| `gemini_research` | Deep topic research with file context |
+| `gemini_summarize` | Condensing large files or content |
+
+```json
+{
+  "gemini": {
+    "model": "auto",
+    "timeout": 0,
+    "maxConcurrentRequests": 1
+  }
+}
+```
+
+| Option | Default | Description |
+|--------|---------|-------------|
+| `model` | `"auto"` | Model to use (`"auto"`, `"gemini-3-flash-preview"`, `"gemini-3-pro-preview"`) |
+| `timeout` | `0` | CLI timeout in ms (0 = no timeout) |
+| `maxConcurrentRequests` | `1` | Max parallel Gemini operations |
+
+> **Note:** Gemini findings should be verified by reading actual code. Use as a starting point for exploration.
+
 ---
 
 ## Graceful Degradation & Offline Mode

package/dist/gemini/executor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"executor.d.ts","sourceRoot":"","sources":["../../src/gemini/executor.ts"],"names":[],"mappings":"AAAA;;;GAGG;AASH,OAAO,KAAK,EAAE,cAAc,EAAoB,MAAM,YAAY,CAAC;AAkCnE,qBAAa,cAAc;IACzB;;;;;;;OAOG;IACH,OAAO,CAAC,aAAa;IAUrB;;;;OAIG;IACG,cAAc,IAAI,OAAO,CAAC,OAAO,CAAC;IAuBxC;;;;;;;;;OASG;IACG,OAAO,CAAC,OAAO,EAAE,cAAc,GAAG,OAAO,CAAC,MAAM,CAAC;IAuBvD;;;;;;;OAOG;IACH,OAAO,CAAC,WAAW;IAqGnB;;;OAGG;IACH,OAAO,CAAC,UAAU;CAgEnB"}

package/dist/gemini/executor.js

@@ -35,9 +35,10 @@ import { GeminiError } from "./errors.js";
 /** Valid Gemini models that can be used with the CLI */
 const VALID_MODELS = [
     "auto",
+    "gemini-3-flash-preview",
+    "gemini-3-pro-preview",
     "gemini-2.5-flash",
     "gemini-2.5-pro",
-    "gemini-2.0-flash",
 ];
 export class GeminiExecutor {
     /**
@@ -88,14 +89,14 @@ export class GeminiExecutor {
      * @throws {GeminiError} On CLI errors, timeout, or execution failure
      */
     async execute(options) {
-        const { prompt, model, timeout } = options;
+        const { prompt, model, timeout, onProgress } = options;
         // Create secure temp file for prompt
         const tempPath = join(tmpdir(), `gemini-prompt-${randomUUID()}.txt`);
         try {
             // Write prompt to temp file with secure permissions (owner read/write only)
             await writeFile(tempPath, prompt, { mode: 0o600 });
             // Execute CLI with prompt from stdin
-            const response = await this.spawnGemini(tempPath, model, timeout);
+            const response = await this.spawnGemini(tempPath, model, timeout, onProgress);
             return response;
         }
         finally {
@@ -116,7 +117,7 @@ export class GeminiExecutor {
      *
      * @internal
      */
-    spawnGemini(promptFile, model, timeout) {
+    spawnGemini(promptFile, model, timeout, onProgress) {
         // Validate model first to prevent injection
         this.validateModel(model);
         return new Promise((resolve, reject) => {
@@ -137,6 +138,28 @@ export class GeminiExecutor {
                     proc.kill("SIGTERM");
                 }, timeout);
             }
+            // Set up progress notifications (every 30 seconds)
+            let progressIntervalId;
+            let progressCount = 0;
+            const PROGRESS_INTERVAL_MS = 30_000; // 30 seconds
+            if (onProgress) {
+                progressIntervalId = setInterval(() => {
+                    progressCount++;
+                    onProgress({
+                        progress: progressCount,
+                        message: `Gemini CLI processing... (${progressCount * 30}s elapsed)`,
+                    }).catch((err) => {
+                        console.error("[gemini-executor] Progress notification failed:", err);
+                    });
+                }, PROGRESS_INTERVAL_MS);
+            }
+            // Helper to cleanup intervals
+            const cleanup = () => {
+                if (timeoutId)
+                    clearTimeout(timeoutId);
+                if (progressIntervalId)
+                    clearInterval(progressIntervalId);
+            };
             proc.stdout.on("data", (data) => {
                 stdout += data.toString();
             });
@@ -144,15 +167,11 @@ export class GeminiExecutor {
                 stderr += data.toString();
             });
             proc.on("error", (error) => {
-                if (timeoutId) {
-                    clearTimeout(timeoutId);
-                }
+                cleanup();
                 reject(this.parseError(error.message, "spawn"));
             });
             proc.on("close", (code) => {
-                if (timeoutId) {
-                    clearTimeout(timeoutId);
-                }
+                cleanup();
                 if (timedOut) {
                     reject(new GeminiError(`Gemini CLI timed out after ${timeout}ms`, "TIMEOUT", { isRetryable: true }));
                     return;
@@ -167,9 +186,7 @@ export class GeminiExecutor {
             const stream = createReadStream(promptFile);
             stream.pipe(proc.stdin);
             stream.on("error", (err) => {
-                if (timeoutId) {
-                    clearTimeout(timeoutId);
-                }
+                cleanup();
                 proc.kill("SIGTERM");
                 reject(this.parseError(err.message, "spawn"));
             });

package/dist/gemini/executor.js.map

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package/dist/gemini/index.d.ts

@@ -32,10 +32,11 @@
  * }
  * ```
  */
-export type { GeminiModel, GeminiConfig, ExecuteOptions, PromptOptions, GeminiResult, AnalysisType, AnalyzeOptions, ResearchOptions, SummarizeOptions, } from "./types.js";
+export type { GeminiModel, GeminiConfig, ExecuteOptions, PromptOptions, GeminiResult, AnalysisType, AnalyzeOptions, ResearchOptions, SummarizeOptions, ProgressCallback, } from "./types.js";
 export { DEFAULT_GEMINI_CONFIG } from "./types.js";
 export type { GeminiErrorCode } from "./errors.js";
 export { GeminiError } from "./errors.js";
 export { GeminiExecutor } from "./executor.js";
 export { GeminiWrapper } from "./wrapper.js";
+export { Semaphore } from "./semaphore.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/gemini/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/gemini/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAiCG;AAGH,YAAY,EACV,WAAW,EACX,YAAY,EACZ,cAAc,EACd,aAAa,EACb,YAAY,EACZ,YAAY,EACZ,cAAc,EACd,eAAe,EACf,gBAAgB,EAChB,gBAAgB,GACjB,MAAM,YAAY,CAAC;AAEpB,OAAO,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAC;AAGnD,YAAY,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAG1C,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAG/C,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAG7C,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC"}

package/dist/gemini/index.js

@@ -38,4 +38,6 @@ export { GeminiError } from "./errors.js";
 export { GeminiExecutor } from "./executor.js";
 // Wrapper
 export { GeminiWrapper } from "./wrapper.js";
+// Semaphore
+export { Semaphore } from "./semaphore.js";
 //# sourceMappingURL=index.js.map

package/dist/gemini/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/gemini/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAiCG;AAeH,OAAO,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAC;AAInD,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE1C,WAAW;AACX,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAE/C,UAAU;AACV,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/gemini/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAiCG;AAgBH,OAAO,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAC;AAInD,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE1C,WAAW;AACX,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAE/C,UAAU;AACV,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAE7C,YAAY;AACZ,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC"}

package/dist/gemini/semaphore.d.ts

@@ -0,0 +1,64 @@
+/**
+ * Async semaphore for controlling concurrent operations.
+ * @module gemini/semaphore
+ */
+/**
+ * Async semaphore that limits concurrent operations.
+ *
+ * Provides a classic semaphore pattern for Node.js async operations.
+ * When all slots are occupied, acquire() returns a promise that resolves
+ * when a slot becomes available (FIFO order).
+ *
+ * @example
+ * ```typescript
+ * const semaphore = new Semaphore(3); // Max 3 concurrent
+ *
+ * async function doWork(id: number) {
+ *   const release = await semaphore.acquire();
+ *   try {
+ *     console.log(`Task ${id} started`);
+ *     await someAsyncOperation();
+ *   } finally {
+ *     release(); // Always release, even on error
+ *   }
+ * }
+ * ```
+ */
+export declare class Semaphore {
+    private readonly maxConcurrent;
+    /** Number of available slots */
+    private available;
+    /** Queue of waiting acquire() calls (FIFO) */
+    private readonly waiting;
+    /**
+     * Create a new semaphore.
+     *
+     * @param maxConcurrent - Maximum number of concurrent operations allowed
+     * @throws {Error} If maxConcurrent is less than 1
+     */
+    constructor(maxConcurrent: number);
+    /**
+     * Acquire a semaphore slot.
+     *
+     * Returns immediately if a slot is available, otherwise waits until
+     * another operation releases a slot. Slots are granted in FIFO order.
+     *
+     * @returns Promise that resolves to a release function. MUST call
+     *          the release function when operation completes (use finally).
+     */
+    acquire(): Promise<() => void>;
+    /**
+     * Release a semaphore slot.
+     * @internal - Called via release function returned by acquire()
+     */
+    private release;
+    /**
+     * Get current number of available slots.
+     */
+    get availableSlots(): number;
+    /**
+     * Get number of operations waiting for a slot.
+     */
+    get queueLength(): number;
+}
+//# sourceMappingURL=semaphore.d.ts.map

package/dist/gemini/semaphore.d.ts.map

@@ -0,0 +1 @@
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package/dist/gemini/semaphore.js

@@ -0,0 +1,99 @@
+/**
+ * Async semaphore for controlling concurrent operations.
+ * @module gemini/semaphore
+ */
+/**
+ * Async semaphore that limits concurrent operations.
+ *
+ * Provides a classic semaphore pattern for Node.js async operations.
+ * When all slots are occupied, acquire() returns a promise that resolves
+ * when a slot becomes available (FIFO order).
+ *
+ * @example
+ * ```typescript
+ * const semaphore = new Semaphore(3); // Max 3 concurrent
+ *
+ * async function doWork(id: number) {
+ *   const release = await semaphore.acquire();
+ *   try {
+ *     console.log(`Task ${id} started`);
+ *     await someAsyncOperation();
+ *   } finally {
+ *     release(); // Always release, even on error
+ *   }
+ * }
+ * ```
+ */
+export class Semaphore {
+    maxConcurrent;
+    /** Number of available slots */
+    available;
+    /** Queue of waiting acquire() calls (FIFO) */
+    waiting = [];
+    /**
+     * Create a new semaphore.
+     *
+     * @param maxConcurrent - Maximum number of concurrent operations allowed
+     * @throws {Error} If maxConcurrent is less than 1
+     */
+    constructor(maxConcurrent) {
+        this.maxConcurrent = maxConcurrent;
+        if (maxConcurrent < 1) {
+            throw new Error(`Semaphore maxConcurrent must be >= 1, got: ${maxConcurrent}`);
+        }
+        this.available = maxConcurrent;
+    }
+    /**
+     * Acquire a semaphore slot.
+     *
+     * Returns immediately if a slot is available, otherwise waits until
+     * another operation releases a slot. Slots are granted in FIFO order.
+     *
+     * @returns Promise that resolves to a release function. MUST call
+     *          the release function when operation completes (use finally).
+     */
+    acquire() {
+        // If slot available, return immediately (synchronous fast path)
+        if (this.available > 0) {
+            this.available--;
+            return Promise.resolve(() => this.release());
+        }
+        // No slots available, queue and wait
+        return new Promise((resolve) => {
+            this.waiting.push(() => {
+                resolve(() => this.release());
+            });
+        });
+    }
+    /**
+     * Release a semaphore slot.
+     * @internal - Called via release function returned by acquire()
+     */
+    release() {
+        // If someone is waiting, wake them up immediately
+        const nextWaiting = this.waiting.shift();
+        if (nextWaiting) {
+            nextWaiting();
+            return;
+        }
+        // No one waiting, make slot available
+        this.available++;
+        // Safety check: should never exceed max
+        if (this.available > this.maxConcurrent) {
+            throw new Error(`Semaphore corrupted: available (${this.available}) > max (${this.maxConcurrent})`);
+        }
+    }
+    /**
+     * Get current number of available slots.
+     */
+    get availableSlots() {
+        return this.available;
+    }
+    /**
+     * Get number of operations waiting for a slot.
+     */
+    get queueLength() {
+        return this.waiting.length;
+    }
+}
+//# sourceMappingURL=semaphore.js.map

package/dist/gemini/semaphore.js.map

@@ -0,0 +1 @@
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package/dist/gemini/types.d.ts

@@ -6,7 +6,7 @@
  * Available Gemini models.
  * "auto" lets the Gemini CLI choose the best model automatically.
  */
-export type GeminiModel = "auto" | "gemini-2.5-flash" | "gemini-2.5-pro" | "gemini-2.0-flash";
+export type GeminiModel = "auto" | "gemini-3-flash-preview" | "gemini-3-pro-preview" | "gemini-2.5-flash" | "gemini-2.5-pro";
 /**
  * Configuration for Gemini CLI wrapper.
  */
@@ -15,6 +15,12 @@ export interface GeminiConfig {
     model: GeminiModel;
     /** Timeout in milliseconds for CLI execution (0 = no timeout, default: 0) */
     timeout: number;
+    /**
+     * Maximum number of concurrent Gemini CLI requests.
+     * Additional requests will queue and wait for a slot.
+     * Default: 3
+     */
+    maxConcurrentRequests: number;
 }
 /**
  * Default configuration for Gemini CLI wrapper.
@@ -23,6 +29,18 @@ export declare const DEFAULT_GEMINI_CONFIG: GeminiConfig;
 /**
  * Options for low-level CLI execution.
  */
+/**
+ * Callback for sending progress notifications during long-running operations.
+ * Called periodically to prevent timeout on client side.
+ */
+export type ProgressCallback = (params: {
+    /** Current progress value */
+    progress: number;
+    /** Optional total value for completion percentage */
+    total?: number;
+    /** Optional status message */
+    message?: string;
+}) => Promise<void>;
 export interface ExecuteOptions {
     /** The prompt to send to Gemini */
     prompt: string;
@@ -30,6 +48,8 @@ export interface ExecuteOptions {
     model: GeminiModel;
     /** Timeout in milliseconds */
     timeout: number;
+    /** Optional progress callback for long-running operations */
+    onProgress?: ProgressCallback;
 }
 /**
  * Options for high-level prompt operation.
@@ -43,6 +63,8 @@ export interface PromptOptions {
     model?: GeminiModel;
     /** Timeout override (default: from config) */
     timeout?: number;
+    /** Optional progress callback for long-running operations */
+    onProgress?: ProgressCallback;
 }
 /**
  * Result from Gemini operations.

package/dist/gemini/types.d.ts.map

@@ -1 +1 @@
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package/dist/gemini/types.js

@@ -8,5 +8,6 @@
 export const DEFAULT_GEMINI_CONFIG = {
     model: "auto",
     timeout: 0, // 0 = no timeout, wait indefinitely
+    maxConcurrentRequests: 1,
 };
 //# sourceMappingURL=types.js.map

package/dist/gemini/types.js.map

@@ -1 +1 @@
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+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/gemini/types.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAqCH;;GAEG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAAiB;IACjD,KAAK,EAAE,MAAM;IACb,OAAO,EAAE,CAAC,EAAE,oCAAoC;IAChD,qBAAqB,EAAE,CAAC;CACzB,CAAC"}

package/dist/gemini/wrapper.d.ts

@@ -45,6 +45,7 @@ export declare class GeminiWrapper {
     private readonly config;
     private readonly projectPath;
     private readonly executor;
+    private readonly semaphore;
     /**
      * Create a new GeminiWrapper.
      *

package/dist/gemini/wrapper.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"wrapper.d.ts","sourceRoot":"","sources":["../../src/gemini/wrapper.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAC/C,OAAO,EAEL,KAAK,YAAY,EACjB,KAAK,YAAY,EACjB,KAAK,WAAW,EAChB,KAAK,YAAY,EACjB,KAAK,aAAa,EACnB,MAAM,YAAY,CAAC;AAKpB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoCG;AACH,qBAAa,aAAa;IACxB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAe;IACtC,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAiB;IAE1C;;;;;;OAMG;gBAED,MAAM,EAAE,OAAO,CAAC,YAAY,CAAC,YAAK,EAClC,WAAW,EAAE,MAAM,EACnB,QAAQ,CAAC,EAAE,cAAc;IAO3B;;;;OAIG;IACG,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;IAIrC;;;;;OAKG;IACH,YAAY,CAAC,KAAK,EAAE,WAAW,GAAG,WAAW;IAI7C;;;;;;OAMG;IACG,MAAM,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,YAAY,CAAC;IAqB3D;;;;;;;;;;;;;OAaG;IACG,SAAS,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAuE9D;;;;;;;;OAQG;IACG,WAAW,CACf,KAAK,EAAE,MAAM,EAAE,EACf,IAAI,EAAE,YAAY,EAClB,KAAK,CAAC,EAAE,MAAM,GACb,OAAO,CAAC,YAAY,CAAC;IAoCxB;;;;;;;;OAQG;IACG,QAAQ,CACZ,KAAK,EAAE,MAAM,EACb,KAAK,CAAC,EAAE,MAAM,EAAE,EAChB,KAAK,GAAE,SAAS,GAAG,QAAQ,GAAG,MAAiB,GAC9C,OAAO,CAAC,YAAY,CAAC;IAsBxB;;;;;;;;OAQG;IACG,SAAS,CACb,OAAO,CAAC,EAAE,MAAM,EAChB,KAAK,CAAC,EAAE,MAAM,EAAE,EAChB,MAAM,GAAE,QAAQ,GAAG,WAAW,GAAG,WAAsB,GACtD,OAAO,CAAC,YAAY,CAAC;CA+BzB"}
+{"version":3,"file":"wrapper.d.ts","sourceRoot":"","sources":["../../src/gemini/wrapper.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAE/C,OAAO,EAEL,KAAK,YAAY,EACjB,KAAK,YAAY,EACjB,KAAK,WAAW,EAChB,KAAK,YAAY,EACjB,KAAK,aAAa,EACnB,MAAM,YAAY,CAAC;AAKpB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoCG;AACH,qBAAa,aAAa;IACxB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAe;IACtC,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAiB;IAC1C,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAY;IAEtC;;;;;;OAMG;gBAED,MAAM,EAAE,OAAO,CAAC,YAAY,CAAC,YAAK,EAClC,WAAW,EAAE,MAAM,EACnB,QAAQ,CAAC,EAAE,cAAc;IAW3B;;;;OAIG;IACG,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;IAIrC;;;;;OAKG;IACH,YAAY,CAAC,KAAK,EAAE,WAAW,GAAG,WAAW;IAI7C;;;;;;OAMG;IACG,MAAM,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,YAAY,CAAC;IA4B3D;;;;;;;;;;;;;OAaG;IACG,SAAS,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAuE9D;;;;;;;;OAQG;IACG,WAAW,CACf,KAAK,EAAE,MAAM,EAAE,EACf,IAAI,EAAE,YAAY,EAClB,KAAK,CAAC,EAAE,MAAM,GACb,OAAO,CAAC,YAAY,CAAC;IAoCxB;;;;;;;;OAQG;IACG,QAAQ,CACZ,KAAK,EAAE,MAAM,EACb,KAAK,CAAC,EAAE,MAAM,EAAE,EAChB,KAAK,GAAE,SAAS,GAAG,QAAQ,GAAG,MAAiB,GAC9C,OAAO,CAAC,YAAY,CAAC;IAsBxB;;;;;;;;OAQG;IACG,SAAS,CACb,OAAO,CAAC,EAAE,MAAM,EAChB,KAAK,CAAC,EAAE,MAAM,EAAE,EAChB,MAAM,GAAE,QAAQ,GAAG,WAAW,GAAG,WAAsB,GACtD,OAAO,CAAC,YAAY,CAAC;CA+BzB"}

package/dist/gemini/wrapper.js

@@ -6,6 +6,7 @@ import { readFile, stat, realpath } from "node:fs/promises";
 import { resolve, relative, isAbsolute } from "node:path";
 import { GeminiError } from "./errors.js";
 import { GeminiExecutor } from "./executor.js";
+import { Semaphore } from "./semaphore.js";
 import { DEFAULT_GEMINI_CONFIG, } from "./types.js";
 /** Maximum file size in bytes (10MB) */
 const MAX_FILE_SIZE = 10 * 1024 * 1024;
@@ -50,6 +51,7 @@ export class GeminiWrapper {
     config;
     projectPath;
     executor;
+    semaphore;
     /**
      * Create a new GeminiWrapper.
      *
@@ -61,6 +63,10 @@ export class GeminiWrapper {
         this.config = { ...DEFAULT_GEMINI_CONFIG, ...config };
         this.projectPath = resolve(projectPath);
         this.executor = executor ?? new GeminiExecutor();
+        this.semaphore =
+            this.config.maxConcurrentRequests > 0
+                ? new Semaphore(this.config.maxConcurrentRequests)
+                : new Semaphore(Number.MAX_SAFE_INTEGER);
     }
     /**
      * Check if Gemini CLI is available.
@@ -94,14 +100,22 @@ export class GeminiWrapper {
         if (options.context) {
             fullPrompt = `${options.context}\n\n${options.prompt}`;
         }
-        const startTime = Date.now();
-        const response = await this.executor.execute({
-            prompt: fullPrompt,
-            model,
-            timeout,
-        });
-        const duration = Date.now() - startTime;
-        return { response, model, duration };
+        // Acquire semaphore slot for rate limiting
+        const release = await this.semaphore.acquire();
+        try {
+            const startTime = Date.now();
+            const response = await this.executor.execute({
+                prompt: fullPrompt,
+                model,
+                timeout,
+                ...(options.onProgress && { onProgress: options.onProgress }),
+            });
+            const duration = Date.now() - startTime;
+            return { response, model, duration };
+        }
+        finally {
+            release();
+        }
     }
     /**
      * Read files with security validation.

package/dist/gemini/wrapper.js.map

@@ -1 +1 @@
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package/dist/mcp/gemini-handlers.d.ts

@@ -2,6 +2,8 @@
  * MCP tool handlers for Gemini CLI integration.
  * @module mcp/gemini-handlers
  */
+import type { RequestHandlerExtra } from "@modelcontextprotocol/sdk/shared/protocol.js";
+import type { ServerRequest, ServerNotification } from "@modelcontextprotocol/sdk/types.js";
 import type { ToolResult } from "./types.js";
 import type { GeminiWrapper } from "../gemini/wrapper.js";
 import type { GeminiPromptInput, GeminiResearchInput, GeminiAnalyzeCodeInput, GeminiSummarizeInput } from "./gemini-tools.js";
@@ -12,9 +14,10 @@ import type { GeminiPromptInput, GeminiResearchInput, GeminiAnalyzeCodeInput, Ge
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with prompt and optional context
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted response or error
  */
-export declare function handleGeminiPrompt(wrapper: GeminiWrapper, input: GeminiPromptInput): Promise<ToolResult>;
+export declare function handleGeminiPrompt(wrapper: GeminiWrapper, input: GeminiPromptInput, extra?: RequestHandlerExtra<ServerRequest, ServerNotification>): Promise<ToolResult>;
 /**
  * Handle gemini_research tool invocation.
  *
@@ -22,9 +25,10 @@ export declare function handleGeminiPrompt(wrapper: GeminiWrapper, input: Gemini
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with topic, optional files, and depth
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted research findings or error
  */
-export declare function handleGeminiResearch(wrapper: GeminiWrapper, input: GeminiResearchInput): Promise<ToolResult>;
+export declare function handleGeminiResearch(wrapper: GeminiWrapper, input: GeminiResearchInput, _extra?: RequestHandlerExtra<ServerRequest, ServerNotification>): Promise<ToolResult>;
 /**
  * Handle gemini_analyze_code tool invocation.
  *
@@ -32,9 +36,10 @@ export declare function handleGeminiResearch(wrapper: GeminiWrapper, input: Gemi
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with files, analysis type, and optional focus
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted analysis or error
  */
-export declare function handleGeminiAnalyzeCode(wrapper: GeminiWrapper, input: GeminiAnalyzeCodeInput): Promise<ToolResult>;
+export declare function handleGeminiAnalyzeCode(wrapper: GeminiWrapper, input: GeminiAnalyzeCodeInput, _extra?: RequestHandlerExtra<ServerRequest, ServerNotification>): Promise<ToolResult>;
 /**
  * Handle gemini_summarize tool invocation.
  *
@@ -43,7 +48,8 @@ export declare function handleGeminiAnalyzeCode(wrapper: GeminiWrapper, input: G
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with content/files and format
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted summary or error
  */
-export declare function handleGeminiSummarize(wrapper: GeminiWrapper, input: GeminiSummarizeInput): Promise<ToolResult>;
+export declare function handleGeminiSummarize(wrapper: GeminiWrapper, input: GeminiSummarizeInput, _extra?: RequestHandlerExtra<ServerRequest, ServerNotification>): Promise<ToolResult>;
 //# sourceMappingURL=gemini-handlers.d.ts.map

package/dist/mcp/gemini-handlers.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"gemini-handlers.d.ts","sourceRoot":"","sources":["../../src/mcp/gemini-handlers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,8CAA8C,CAAC;AACxF,OAAO,KAAK,EACV,aAAa,EACb,kBAAkB,EACnB,MAAM,oCAAoC,CAAC;AAC5C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AAC7C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,KAAK,EACV,iBAAiB,EACjB,mBAAmB,EACnB,sBAAsB,EACtB,oBAAoB,EACrB,MAAM,mBAAmB,CAAC;AA+G3B;;;;;;;;;GASG;AACH,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,aAAa,EACtB,KAAK,EAAE,iBAAiB,EACxB,KAAK,CAAC,EAAE,mBAAmB,CAAC,aAAa,EAAE,kBAAkB,CAAC,GAC7D,OAAO,CAAC,UAAU,CAAC,CAYrB;AAED;;;;;;;;;GASG;AACH,wBAAsB,oBAAoB,CACxC,OAAO,EAAE,aAAa,EACtB,KAAK,EAAE,mBAAmB,EAC1B,MAAM,CAAC,EAAE,mBAAmB,CAAC,aAAa,EAAE,kBAAkB,CAAC,GAC9D,OAAO,CAAC,UAAU,CAAC,CAYrB;AAED;;;;;;;;;GASG;AACH,wBAAsB,uBAAuB,CAC3C,OAAO,EAAE,aAAa,EACtB,KAAK,EAAE,sBAAsB,EAC7B,MAAM,CAAC,EAAE,mBAAmB,CAAC,aAAa,EAAE,kBAAkB,CAAC,GAC9D,OAAO,CAAC,UAAU,CAAC,CAYrB;AAED;;;;;;;;;;GAUG;AACH,wBAAsB,qBAAqB,CACzC,OAAO,EAAE,aAAa,EACtB,KAAK,EAAE,oBAAoB,EAC3B,MAAM,CAAC,EAAE,mBAAmB,CAAC,aAAa,EAAE,kBAAkB,CAAC,GAC9D,OAAO,CAAC,UAAU,CAAC,CAsBrB"}

package/dist/mcp/gemini-handlers.js

@@ -67,6 +67,35 @@ function formatError(error) {
         isError: true,
     };
 }
+/**
+ * Create a progress callback from MCP request metadata.
+ *
+ * Sends progress notifications to prevent client-side timeout during long operations.
+ *
+ * @param extra - Request handler extra data from MCP SDK
+ * @returns Progress callback or undefined if no progress token available
+ */
+function createProgressCallback(extra) {
+    if (!extra?.sendNotification || !extra._meta?.progressToken) {
+        return undefined;
+    }
+    const progressToken = extra._meta.progressToken;
+    return async (params) => {
+        try {
+            await extra.sendNotification({
+                method: "notifications/progress",
+                params: {
+                    progressToken,
+                    progress: params.progress,
+                    message: params.message,
+                },
+            });
+        }
+        catch (error) {
+            console.error("[gemini-handlers] Progress notification failed:", error);
+        }
+    };
+}
 // ============================================
 // Handlers
 // ============================================
@@ -77,13 +106,16 @@ function formatError(error) {
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with prompt and optional context
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted response or error
  */
-export async function handleGeminiPrompt(wrapper, input) {
+export async function handleGeminiPrompt(wrapper, input, extra) {
     try {
+        const onProgress = createProgressCallback(extra);
         const result = await wrapper.prompt({
             prompt: input.prompt,
             ...(input.context ? { context: input.context } : {}),
+            ...(onProgress ? { onProgress } : {}),
         });
         return formatSuccess(result.response, result.model, result.duration);
     }
@@ -98,10 +130,12 @@ export async function handleGeminiPrompt(wrapper, input) {
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with topic, optional files, and depth
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted research findings or error
  */
-export async function handleGeminiResearch(wrapper, input) {
+export async function handleGeminiResearch(wrapper, input, _extra) {
     try {
+        // Note: progress callback not yet supported by wrapper.research()
         const result = await wrapper.research(input.topic, input.files, input.depth ?? "medium");
         return formatSuccess(result.response, result.model, result.duration);
     }
@@ -116,10 +150,12 @@ export async function handleGeminiResearch(wrapper, input) {
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with files, analysis type, and optional focus
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted analysis or error
  */
-export async function handleGeminiAnalyzeCode(wrapper, input) {
+export async function handleGeminiAnalyzeCode(wrapper, input, _extra) {
     try {
+        // Note: progress callback not yet supported by wrapper.analyzeCode()
         const result = await wrapper.analyzeCode(input.files, input.analysis_type ?? "general", input.focus);
         return formatSuccess(result.response, result.model, result.duration);
     }
@@ -135,9 +171,10 @@ export async function handleGeminiAnalyzeCode(wrapper, input) {
  *
  * @param wrapper - GeminiWrapper instance to use for execution
  * @param input - Tool input with content/files and format
+ * @param extra - Optional MCP request handler extra data for progress notifications
  * @returns Tool result with formatted summary or error
  */
-export async function handleGeminiSummarize(wrapper, input) {
+export async function handleGeminiSummarize(wrapper, input, _extra) {
     try {
         // Validate that either content or files is provided
         if (!input.content && (!input.files || input.files.length === 0)) {
@@ -148,6 +185,7 @@ export async function handleGeminiSummarize(wrapper, input) {
                 isError: true,
             };
         }
+        // Note: progress callback not yet supported by wrapper.summarize()
         const result = await wrapper.summarize(input.content, input.files, input.format ?? "bullet");
         return formatSuccess(result.response, result.model, result.duration);
     }

package/dist/mcp/gemini-handlers.js.map

@@ -1 +1 @@
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+{"version":3,"file":"gemini-handlers.js","sourceRoot":"","sources":["../../src/mcp/gemini-handlers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAeH,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAElD,+CAA+C;AAC/C,aAAa;AACb,+CAA+C;AAE/C;;;;;;;GAOG;AACH,SAAS,aAAa,CACpB,QAAgB,EAChB,KAAa,EACb,QAAgB;IAEhB,MAAM,MAAM,GAAG,oBAAoB,KAAK,gBAAgB,CAAC,QAAQ,GAAG,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC;IACzF,OAAO;QACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,GAAG,MAAM,EAAE,CAAC;KACrD,CAAC;AACJ,CAAC;AAED;;;;;;;;;;;GAWG;AACH,SAAS,WAAW,CAAC,KAAc;IACjC,IAAI,OAAe,CAAC;IAEpB,IAAI,WAAW,CAAC,aAAa,CAAC,KAAK,CAAC,EAAE,CAAC;QACrC,QAAQ,KAAK,CAAC,IAAI,EAAE,CAAC;YACnB,KAAK,eAAe;gBAClB,OAAO,GAAG,wDAAwD,CAAC;gBACnE,MAAM;YACR,KAAK,eAAe;gBAClB,OAAO;oBACL,uEAAuE,CAAC;gBAC1E,MAAM;YACR,KAAK,gBAAgB,CAAC;YACtB,KAAK,gBAAgB,CAAC;YACtB,KAAK,gBAAgB;gBACnB,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC;gBACxB,MAAM;YACR,KAAK,SAAS;gBACZ,OAAO;oBACL,8DAA8D,CAAC;gBACjE,MAAM;YACR;gBACE,OAAO,GAAG,iBAAiB,KAAK,CAAC,OAAO,EAAE,CAAC;QAC/C,CAAC;IACH,CAAC;SAAM,IAAI,KAAK,YAAY,KAAK,EAAE,CAAC;QAClC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC;IAC1B,CAAC;SAAM,CAAC;QACN,OAAO,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;IAC1B,CAAC;IAED,OAAO;QACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;QAC1C,OAAO,EAAE,IAAI;KACd,CAAC;AACJ,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,sBAAsB,CAC7B,KAA8D;IAE9D,IAAI,CAAC,KAAK,EAAE,gBAAgB,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,aAAa,EAAE,CAAC;QAC5D,OAAO,SAAS,CAAC;IACnB,CAAC;IAED,MAAM,aAAa,GAAG,KAAK,CAAC,KAAK,CAAC,aAAa,CAAC;IAEhD,OAAO,KAAK,EAAE,MAAM,EAAE,EAAE;QACtB,IAAI,CAAC;YACH,MAAM,KAAK,CAAC,gBAAgB,CAAC;gBAC3B,MAAM,EAAE,wBAAwB;gBAChC,MAAM,EAAE;oBACN,aAAa;oBACb,QAAQ,EAAE,MAAM,CAAC,QAAQ;oBACzB,OAAO,EAAE,MAAM,CAAC,OAAO;iBACxB;aACF,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,OAAO,CAAC,KAAK,CAAC,iDAAiD,EAAE,KAAK,CAAC,CAAC;QAC1E,CAAC;IACH,CAAC,CAAC;AACJ,CAAC;AAED,+CAA+C;AAC/C,WAAW;AACX,+CAA+C;AAE/C;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,OAAsB,EACtB,KAAwB,EACxB,KAA8D;IAE9D,IAAI,CAAC;QACH,MAAM,UAAU,GAAG,sBAAsB,CAAC,KAAK,CAAC,CAAC;QACjD,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,MAAM,CAAC;YAClC,MAAM,EAAE,KAAK,CAAC,MAAM;YACpB,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACpD,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;SACtC,CAAC,CAAC;QACH,OAAO,aAAa,CAAC,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,QAAQ,CAAC,CAAC;IACvE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,WAAW,CAAC,KAAK,CAAC,CAAC;IAC5B,CAAC;AACH,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,OAAsB,EACtB,KAA0B,EAC1B,MAA+D;IAE/D,IAAI,CAAC;QACH,kEAAkE;QAClE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,QAAQ,CACnC,KAAK,CAAC,KAAK,EACX,KAAK,CAAC,KAAK,EACX,KAAK,CAAC,KAAK,IAAI,QAAQ,CACxB,CAAC;QACF,OAAO,aAAa,CAAC,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,QAAQ,CAAC,CAAC;IACvE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,WAAW,CAAC,KAAK,CAAC,CAAC;IAC5B,CAAC;AACH,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,uBAAuB,CAC3C,OAAsB,EACtB,KAA6B,EAC7B,MAA+D;IAE/D,IAAI,CAAC;QACH,qEAAqE;QACrE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,WAAW,CACtC,KAAK,CAAC,KAAK,EACX,KAAK,CAAC,aAAa,IAAI,SAAS,EAChC,KAAK,CAAC,KAAK,CACZ,CAAC;QACF,OAAO,aAAa,CAAC,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,QAAQ,CAAC,CAAC;IACvE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,WAAW,CAAC,KAAK,CAAC,CAAC;IAC5B,CAAC;AACH,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,CAAC,KAAK,UAAU,qBAAqB,CACzC,OAAsB,EACtB,KAA2B,EAC3B,MAA+D;IAE/D,IAAI,CAAC;QACH,oDAAoD;QACpD,IAAI,CAAC,KAAK,CAAC,OAAO,IAAI,CAAC,CAAC,KAAK,CAAC,KAAK,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,EAAE,CAAC;YACjE,OAAO;gBACL,OAAO,EAAE;oBACP,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,0CAA0C,EAAE;iBACnE;gBACD,OAAO,EAAE,IAAI;aACd,CAAC;QACJ,CAAC;QAED,mEAAmE;QACnE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,SAAS,CACpC,KAAK,CAAC,OAAO,EACb,KAAK,CAAC,KAAK,EACX,KAAK,CAAC,MAAM,IAAI,QAAQ,CACzB,CAAC;QACF,OAAO,aAAa,CAAC,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,QAAQ,CAAC,CAAC;IACvE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,WAAW,CAAC,KAAK,CAAC,CAAC;IAC5B,CAAC;AACH,CAAC"}

package/dist/mcp/server.js

@@ -271,7 +271,7 @@ export class ClaudeMindMcpServer {
         const wrapper = this.geminiWrapper;
         const server = this.mcpServer;
         // gemini_prompt
-        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_prompt.name, GEMINI_TOOL_DEFINITIONS.gemini_prompt.description, GEMINI_SCHEMAS.gemini_prompt.shape, async (args) => {
+        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_prompt.name, GEMINI_TOOL_DEFINITIONS.gemini_prompt.description, GEMINI_SCHEMAS.gemini_prompt.shape, async (args, extra) => {
             const parsed = GEMINI_SCHEMAS.gemini_prompt.safeParse(args);
             if (!parsed.success) {
                 return {
@@ -281,14 +281,14 @@ export class ClaudeMindMcpServer {
                     isError: true,
                 };
             }
-            const result = await handleGeminiPrompt(wrapper, parsed.data);
+            const result = await handleGeminiPrompt(wrapper, parsed.data, extra);
             return {
                 content: result.content,
                 ...(result.isError ? { isError: result.isError } : {}),
             };
         });
         // gemini_research
-        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_research.name, GEMINI_TOOL_DEFINITIONS.gemini_research.description, GEMINI_SCHEMAS.gemini_research.shape, async (args) => {
+        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_research.name, GEMINI_TOOL_DEFINITIONS.gemini_research.description, GEMINI_SCHEMAS.gemini_research.shape, async (args, extra) => {
             const parsed = GEMINI_SCHEMAS.gemini_research.safeParse(args);
             if (!parsed.success) {
                 return {
@@ -298,14 +298,14 @@ export class ClaudeMindMcpServer {
                     isError: true,
                 };
             }
-            const result = await handleGeminiResearch(wrapper, parsed.data);
+            const result = await handleGeminiResearch(wrapper, parsed.data, extra);
             return {
                 content: result.content,
                 ...(result.isError ? { isError: result.isError } : {}),
             };
         });
         // gemini_analyze_code
-        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_analyze_code.name, GEMINI_TOOL_DEFINITIONS.gemini_analyze_code.description, GEMINI_SCHEMAS.gemini_analyze_code.shape, async (args) => {
+        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_analyze_code.name, GEMINI_TOOL_DEFINITIONS.gemini_analyze_code.description, GEMINI_SCHEMAS.gemini_analyze_code.shape, async (args, extra) => {
             const parsed = GEMINI_SCHEMAS.gemini_analyze_code.safeParse(args);
             if (!parsed.success) {
                 return {
@@ -315,14 +315,14 @@ export class ClaudeMindMcpServer {
                     isError: true,
                 };
             }
-            const result = await handleGeminiAnalyzeCode(wrapper, parsed.data);
+            const result = await handleGeminiAnalyzeCode(wrapper, parsed.data, extra);
             return {
                 content: result.content,
                 ...(result.isError ? { isError: result.isError } : {}),
             };
         });
         // gemini_summarize
-        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_summarize.name, GEMINI_TOOL_DEFINITIONS.gemini_summarize.description, GEMINI_SCHEMAS.gemini_summarize.shape, async (args) => {
+        server.tool(GEMINI_TOOL_DEFINITIONS.gemini_summarize.name, GEMINI_TOOL_DEFINITIONS.gemini_summarize.description, GEMINI_SCHEMAS.gemini_summarize.shape, async (args, extra) => {
             const parsed = GEMINI_SCHEMAS.gemini_summarize.safeParse(args);
             if (!parsed.success) {
                 return {
@@ -332,7 +332,7 @@ export class ClaudeMindMcpServer {
                     isError: true,
                 };
             }
-            const result = await handleGeminiSummarize(wrapper, parsed.data);
+            const result = await handleGeminiSummarize(wrapper, parsed.data, extra);
             return {
                 content: result.content,
                 ...(result.isError ? { isError: result.isError } : {}),

package/dist/mcp/server.js.map

@@ -1 +1 @@
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package/dist/mind.d.ts.map

@@ -1 +1 @@
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package/dist/mind.js

@@ -1029,6 +1029,15 @@ ${template.outputFormat}
         lines.push("- Security audits before releases (then verify findings)");
         lines.push("- Exploring unfamiliar code patterns");
         lines.push("");
+        lines.push("### CRITICAL: Serial Requests Only");
+        lines.push("");
+        lines.push("**DO NOT make parallel Gemini requests.** Make ONE request at a time and wait for it to complete before making another.");
+        lines.push("");
+        lines.push("- Gemini CLI can timeout under concurrent load");
+        lines.push("- Always wait for each Gemini call to finish before starting the next");
+        lines.push("- Operations may take 60+ seconds for large file sets - this is normal");
+        lines.push("- Progress notifications sent every 30s during long operations");
+        lines.push("");
         return lines.join("\n");
     }
     /**

package/dist/mind.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "claude-cognitive",
-  "version": "0.6.2",
+  "version": "0.6.5",
   "description": "Human-inspired memory system for Claude. LLM thinks. Hindsight remembers. Together = mind.",
   "type": "module",
   "main": "dist/index.js",