claude-cognitive 0.10.0 → 0.11.2

package/README.md

@@ -104,6 +104,15 @@ Claude: "What patterns have I noticed about error handling?"
 → memory_reflect({ query: "error handling patterns" })
 ```
 
+### memory_retain
+
+Store important information in memory for future sessions.
+
+```
+Claude: "I should remember this auth pattern..."
+→ memory_retain({ content: "Auth uses magic links via Supabase" })
+```
+
 ---
 
 ## CLI Commands
@@ -120,8 +129,9 @@ claude-cognitive reflect "query"        # Reason about knowledge
 claude-cognitive config                 # Show configuration
 claude-cognitive update                 # Update global configuration
 claude-cognitive update --check         # Check what needs updating
-claude-cognitive feedback-stats         # Show feedback queue statistics
-claude-cognitive feedback-sync          # Sync pending feedback signals
+claude-cognitive retain "content"       # Store a memory
+claude-cognitive sync-session           # Sync buffered session before /clear
+claude-cognitive update-bank            # Update bank settings
 claude-cognitive uninstall              # Remove from project
 ```
 
@@ -216,53 +226,6 @@ When Hindsight becomes available again, offline memories are automatically synce
 
 ---
 
-## Feedback Signals
-
-claude-cognitive automatically tracks which recalled memories are useful and submits feedback to Hindsight. This enables **query-context aware scoring** - frequently used facts rank higher in future recalls.
-
-### How It Works
-
-1. **Track** - Recalls are tracked during sessions
-2. **Detect** - 4 detection strategies identify which facts Claude used
-3. **Score** - Signals are aggregated into used/ignored verdicts
-4. **Submit** - Feedback is sent to Hindsight (or queued offline)
-5. **Boost** - Future recalls prioritize frequently-used facts
-
-### Detection Strategies
-
-| Strategy            | Confidence | Description                               |
-| ------------------- | ---------- | ----------------------------------------- |
-| Explicit Reference  | 0.9        | "I remember...", "As mentioned before..." |
-| Semantic Similarity | 0.7        | Word overlap between response and facts   |
-| File Access         | 0.4        | Fact mentions files Claude accessed       |
-| Task Correlation    | 0.5        | Fact topics match completed tasks         |
-
-### Configuration
-
-```json
-{
-  "feedback": {
-    "enabled": true,
-    "detection": {
-      "explicit": true,
-      "semantic": true,
-      "behavioral": true
-    }
-  }
-}
-```
-
-### CLI Commands
-
-```bash
-claude-cognitive feedback-stats    # Show queue statistics
-claude-cognitive feedback-sync     # Sync pending signals
-```
-
-See [Feedback Signals](./docs/feedback-signals.md) for full documentation.
-
----
-
 ## API Usage
 
 ```typescript
@@ -308,7 +271,6 @@ Without Hindsight, claude-cognitive works in offline mode - memories are stored
 - **[Concepts](./docs/concepts.md)** - Memory networks, operations, architecture
 - **[Configuration](./docs/configuration.md)** - Full configuration reference
 - **[API Reference](./docs/api-reference.md)** - Complete API documentation
-- **[Feedback Signals](./docs/feedback-signals.md)** - Automatic usage tracking
 - **[Performance](./docs/performance.md)** - Benchmarks and optimization
 
 ---

package/dist/agents/index.d.ts

@@ -2,8 +2,7 @@
  * Agent templates module.
  * @module agents
  */
-export type { AgentTemplate, AgentContext, BuiltInAgentType, GetAgentContextOptions, } from "./types.js";
-export { CODE_EXPLORER_TEMPLATE, CODE_ARCHITECT_TEMPLATE, CODE_REVIEWER_TEMPLATE, BUILT_IN_TEMPLATES, getBuiltInTemplate, getAllBuiltInTemplates, isBuiltInAgent, } from "./templates.js";
+export type { AgentTemplate, AgentContext, GetAgentContextOptions, } from "./types.js";
 export { parseAgentMarkdown, loadCustomAgents, templateToMarkdown, } from "./loader.js";
 export { getAgentContext, formatAgentPrompt, createMinimalContext, } from "./context.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/agents/index.d.ts.map

@@ -1 +1 @@
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package/dist/agents/index.js

@@ -2,8 +2,6 @@
  * Agent templates module.
  * @module agents
  */
-// Built-in templates
-export { CODE_EXPLORER_TEMPLATE, CODE_ARCHITECT_TEMPLATE, CODE_REVIEWER_TEMPLATE, BUILT_IN_TEMPLATES, getBuiltInTemplate, getAllBuiltInTemplates, isBuiltInAgent, } from "./templates.js";
 // Custom agent loading
 export { parseAgentMarkdown, loadCustomAgents, templateToMarkdown, } from "./loader.js";
 // Context preparation

package/dist/agents/index.js.map

@@ -1 +1 @@
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package/dist/agents/types.d.ts

@@ -34,10 +34,6 @@ export interface AgentContext {
     /** Additional context from orchestrator */
     additionalContext?: string;
 }
-/**
- * Built-in agent type identifiers.
- */
-export type BuiltInAgentType = "code-explorer" | "code-architect" | "code-reviewer";
 /**
  * Options for preparing agent context.
  */

package/dist/agents/types.d.ts.map

@@ -1 +1 @@
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package/dist/cli/commands/install.d.ts.map

@@ -1 +1 @@
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package/dist/cli/commands/install.js

@@ -241,10 +241,9 @@ CONTEXT_OUTPUT=$(claude-cognitive inject-context --project "$PROJECT_DIR" 2>/dev
 # Write context to rules file
 if [ -n "$CONTEXT_OUTPUT" ]; then
   cat > "$CONTEXT_FILE" << CONTEXT_EOF
-# Session Context (Auto-Recalled)
+# Hindsight Memory (Auto-Recalled)
 
-This context was automatically recalled from memory at session start.
-Use this background to inform your work on this project.
+Recent activity recalled from Hindsight memory at session start.
 
 ---
 
@@ -257,10 +256,11 @@ CONTEXT_EOF
 else
   # No memories - create minimal placeholder
   cat > "$CONTEXT_FILE" << CONTEXT_EOF
-# Session Context
+# Hindsight Memory
 
 No prior memories found for this project yet.
 Memory will be stored automatically when the session ends.
+Use memory_recall, memory_reflect, and memory_retain MCP tools to interact with memory.
 
 *Generated at $(date -Iseconds)*
 CONTEXT_EOF
@@ -749,7 +749,7 @@ export function registerInstallCommand(cli) {
                 context: {
                     recentMemoryLimit: 3,
                 },
-                retain: {
+                retainFilter: {
                     maxTranscriptLength: 25000,
                     filterToolResults: true,
                     filterFileContents: true,
@@ -844,12 +844,12 @@ export function registerInstallCommand(cli) {
             print("");
             print("Next steps:");
             print(color("  1. Restart Claude Code to load the MCP server", "dim"));
-            print(color("  2. Ask Claude to use memory_recall to verify", "dim"));
+            print(color("  2. Ask Claude to use memory_recall, memory_reflect, or memory_retain", "dim"));
             if (!hindsightConnected) {
                 print(color("  3. Start Hindsight and run: claude-cognitive learn", "dim"));
             }
             print("");
-            print(color("Tip: Session memory syncs automatically when session ends.", "dim"));
+            print(color("Tip: Session memory syncs automatically. Custom agents in .claude/agents/ enable orchestration.", "dim"));
             print("");
         }
         finally {

package/dist/cli/commands/install.js.map

@@ -1 +1 @@
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package/dist/cli/commands/update.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/update.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,KAAK,EAAE,GAAG,EAAE,MAAM,KAAK,CAAC;AAyE/B;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,GAAG,GAAG,IAAI,CAojBpD"}
+{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/update.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,KAAK,EAAE,GAAG,EAAE,MAAM,KAAK,CAAC;AAyE/B;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,GAAG,GAAG,IAAI,CAoepD"}

package/dist/cli/commands/update.js

@@ -2,7 +2,7 @@
  * CLI update command - update claude-cognitive configuration without reinstall.
  * @module cli/commands/update
  */
-import { mkdir, readFile, writeFile, access } from "node:fs/promises";
+import { mkdir, readFile, writeFile, access, unlink } from "node:fs/promises";
 import { join } from "node:path";
 import { homedir } from "node:os";
 import { createStartHookScript, createSessionEndHookScript, createSecurityReviewerAgent, } from "./install.js";
@@ -54,7 +54,7 @@ const DEFAULT_CONFIG = {
     context: {
         recentMemoryLimit: 3,
     },
-    retain: {
+    retainFilter: {
         maxTranscriptLength: 25000,
         filterToolResults: true,
         filterFileContents: true,
@@ -274,100 +274,11 @@ export function registerUpdateCommand(cli) {
                     printWarn("Old stop-hook.sh found (will be replaced with session-end-hook.sh)");
                 }
                 else {
-                    // Create new simplified session-end-hook.sh
-                    const { mkdir: mkdirAsync, writeFile: writeFileAsync, unlink: unlinkAsync, } = await import("node:fs/promises");
-                    const scriptDir = join(projectPath, ".claude", "hooks");
-                    await mkdirAsync(scriptDir, { recursive: true });
-                    const scriptContent = `#!/bin/bash
-# Claude Code SessionEnd hook wrapper for claude-cognitive (project-local)
-# Only processes MAIN sessions in projects with .claudemindrc
-# Skips agent sessions and unconfigured projects
-#
-# NOTE: SessionEnd hook only fires when session truly ends, so we don't need
-# the /exit grep and marker file logic from the old Stop hook.
-
-# Read stdin
-INPUT=$(cat)
-
-# Extract fields using jq (or fallback to grep/sed)
-if command -v jq &> /dev/null; then
-  TRANSCRIPT_PATH=$(echo "$INPUT" | jq -r '.transcript_path // empty')
-  PROJECT_DIR=$(echo "$INPUT" | jq -r '.cwd // empty')
-  SESSION_ID=$(echo "$INPUT" | jq -r '.session_id // empty')
-  REASON=$(echo "$INPUT" | jq -r '.reason // empty')
-else
-  TRANSCRIPT_PATH=$(echo "$INPUT" | grep -o '"transcript_path":"[^"]*"' | cut -d'"' -f4)
-  PROJECT_DIR=$(echo "$INPUT" | grep -o '"cwd":"[^"]*"' | cut -d'"' -f4)
-  SESSION_ID=$(echo "$INPUT" | grep -o '"session_id":"[^"]*"' | cut -d'"' -f4)
-  REASON=$(echo "$INPUT" | grep -o '"reason":"[^"]*"' | cut -d'"' -f4)
-fi
-
-# Exit early if no transcript path
-if [ -z "$TRANSCRIPT_PATH" ] || [ ! -f "$TRANSCRIPT_PATH" ]; then
-  exit 0
-fi
-
-# FILTER 1: Skip agent sessions (filename starts with "agent-")
-FILENAME=$(basename "$TRANSCRIPT_PATH")
-if [[ "$FILENAME" == agent-* ]]; then
-  exit 0
-fi
-
-# FILTER 2: Skip projects without .claudemindrc
-if [ -z "$PROJECT_DIR" ] || [ ! -f "$PROJECT_DIR/.claudemindrc" ]; then
-  exit 0
-fi
-
-# Process main session (pass project dir to ensure correct context)
-# Use timeout to prevent hanging if Hindsight is slow (2 minute limit on Linux)
-# Note: timeout may not be available on macOS - script continues without timeout
-if command -v timeout &> /dev/null; then
-  timeout 120 claude-cognitive process-session --project "$PROJECT_DIR" --transcript "$TRANSCRIPT_PATH" || true
-elif command -v gtimeout &> /dev/null; then
-  gtimeout 120 claude-cognitive process-session --project "$PROJECT_DIR" --transcript "$TRANSCRIPT_PATH" || true
-else
-  claude-cognitive process-session --project "$PROJECT_DIR" --transcript "$TRANSCRIPT_PATH" || true
-fi
-
-# Clean up ONLY this session's entries from buffer (not other ongoing sessions)
-# Use flock to prevent race conditions when multiple sessions end simultaneously
-if [ -n "$SESSION_ID" ]; then
-  BUFFER_FILE="$PROJECT_DIR/.claude/.session-buffer.jsonl"
-  LOCK_FILE="$BUFFER_FILE.lock"
-  if [ -f "$BUFFER_FILE" ]; then
-    # Wrap cleanup in flock to ensure atomic read-filter-write
-    (
-      flock -x 200 2>/dev/null || true  # Acquire exclusive lock, continue if flock unavailable
-      if command -v jq &> /dev/null; then
-        # Filter out entries matching this session_id
-        TEMP_FILE=$(mktemp)
-        jq -c "select(.session_id != \\"$SESSION_ID\\")" "$BUFFER_FILE" > "$TEMP_FILE" 2>/dev/null || true
-        if [ -s "$TEMP_FILE" ]; then
-          mv "$TEMP_FILE" "$BUFFER_FILE"
-        else
-          rm -f "$BUFFER_FILE" "$TEMP_FILE"
-        fi
-      else
-        # Without jq, use grep to filter (less reliable but works)
-        TEMP_FILE=$(mktemp)
-        grep -v "\\"session_id\\":\\"$SESSION_ID\\"" "$BUFFER_FILE" > "$TEMP_FILE" 2>/dev/null || true
-        if [ -s "$TEMP_FILE" ]; then
-          mv "$TEMP_FILE" "$BUFFER_FILE"
-        else
-          rm -f "$BUFFER_FILE" "$TEMP_FILE"
-        fi
-      fi
-    ) 200>"$LOCK_FILE"
-    rm -f "$LOCK_FILE" 2>/dev/null || true
-  fi
-fi
-`;
-                    await writeFileAsync(newSessionEndHookPath, scriptContent, {
-                        mode: 0o755,
-                    });
+                    // Create new session-end-hook.sh using shared function
+                    await createSessionEndHookScript(projectPath);
                     // Remove old stop-hook.sh
                     try {
-                        await unlinkAsync(oldStopHookPath);
+                        await unlink(oldStopHookPath);
                     }
                     catch {
                         // Ignore if deletion fails
@@ -403,15 +314,20 @@ fi
                 projectUpdatesNeeded++;
                 projectUpdates.push("Remove obsolete 'semantic' config");
             }
+            // Check for old 'retain' key (renamed to 'retainFilter')
+            if ("retain" in projectConfig && !("retainFilter" in projectConfig)) {
+                projectUpdatesNeeded++;
+                projectUpdates.push("Rename 'retain' to 'retainFilter'");
+            }
             // Check for missing context config
             if (!("context" in projectConfig)) {
                 projectUpdatesNeeded++;
                 projectUpdates.push("Add 'context' config");
             }
-            // Check for missing retain config
-            if (!("retain" in projectConfig)) {
+            // Check for missing retainFilter config
+            if (!("retainFilter" in projectConfig) && !("retain" in projectConfig)) {
                 projectUpdatesNeeded++;
-                projectUpdates.push("Add 'retain' config");
+                projectUpdates.push("Add 'retainFilter' config");
             }
             // Check for missing gemini config
             if (!("gemini" in projectConfig)) {
@@ -437,12 +353,18 @@ fi
                     if ("semantic" in projectConfig) {
                         delete projectConfig.semantic;
                     }
+                    // Migrate 'retain' → 'retainFilter'
+                    if ("retain" in projectConfig &&
+                        !("retainFilter" in projectConfig)) {
+                        projectConfig.retainFilter = projectConfig.retain;
+                        delete projectConfig.retain;
+                    }
                     // Add missing configs with defaults
                     if (!("context" in projectConfig)) {
                         projectConfig.context = DEFAULT_CONFIG.context;
                     }
-                    if (!("retain" in projectConfig)) {
-                        projectConfig.retain = DEFAULT_CONFIG.retain;
+                    if (!("retainFilter" in projectConfig)) {
+                        projectConfig.retainFilter = DEFAULT_CONFIG.retainFilter;
                     }
                     // Remove obsolete feedback config
                     if ("feedback" in projectConfig) {

package/dist/cli/commands/update.js.map

@@ -1 +1 @@
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package/dist/config.d.ts

@@ -1,5 +1,6 @@
 /**
  * Configuration loading for claude-cognitive.
+ * Uses Zod schemas for validation and deep merging.
  * @module config
  */
 import type { ClaudeMindConfig, RetainFilterConfig, SecurityReviewConfig } from "./types.js";
@@ -13,9 +14,6 @@ export declare const DEFAULT_RETAIN_FILTER: RetainFilterConfig;
  * Disabled by default (opt-in feature).
  */
 export declare const DEFAULT_SECURITY_REVIEW_CONFIG: SecurityReviewConfig;
-/**
- * Partial configuration for merging.
- */
 type DeepPartial<T> = {
     [P in keyof T]?: T[P] extends object ? DeepPartial<T[P]> : T[P];
 };

package/dist/config.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH,OAAO,KAAK,EACV,gBAAgB,EAChB,kBAAkB,EAClB,oBAAoB,EACrB,MAAM,YAAY,CAAC;AAsFpB;;;GAGG;AACH,eAAO,MAAM,qBAAqB,EAAE,kBAQnC,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,8BAA8B,EAAE,oBAkB5C,CAAC;AAsBF,KAAK,WAAW,CAAC,CAAC,IAAI;KACnB,CAAC,IAAI,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,MAAM,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;CAChE,CAAC;AAEF,MAAM,MAAM,aAAa,GAAG,WAAW,CAAC,gBAAgB,CAAC,CAAC;AA+I1D;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAsB,UAAU,CAC9B,WAAW,GAAE,MAAsB,EACnC,SAAS,CAAC,EAAE,aAAa,GACxB,OAAO,CAAC,gBAAgB,CAAC,CAkD3B;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,IAAI,gBAAgB,CAEnD"}