claude-code-workflow 6.3.48 → 6.3.49

package/ccw/src/templates/dashboard-js/views/skills-manager.js

@@ -4,10 +4,13 @@
 // ========== Skills State ==========
 var skillsData = {
   projectSkills: [],
-  userSkills: []
+  userSkills: [],
+  disabledProjectSkills: [],
+  disabledUserSkills: []
 };
 var selectedSkill = null;
 var skillsLoading = false;
+var showDisabledSkills = false;
 
 // ========== Main Render Function ==========
 async function renderSkillsManager() {
@@ -36,18 +39,20 @@ async function renderSkillsManager() {
 async function loadSkillsData() {
   skillsLoading = true;
   try {
-    const response = await fetch('/api/skills?path=' + encodeURIComponent(projectPath));
+    const response = await fetch('/api/skills?path=' + encodeURIComponent(projectPath) + '&includeDisabled=true');
     if (!response.ok) throw new Error('Failed to load skills');
     const data = await response.json();
     skillsData = {
       projectSkills: data.projectSkills || [],
-      userSkills: data.userSkills || []
+      userSkills: data.userSkills || [],
+      disabledProjectSkills: data.disabledProjectSkills || [],
+      disabledUserSkills: data.disabledUserSkills || []
     };
     // Update badge
     updateSkillsBadge();
   } catch (err) {
     console.error('Failed to load skills:', err);
-    skillsData = { projectSkills: [], userSkills: [] };
+    skillsData = { projectSkills: [], userSkills: [], disabledProjectSkills: [], disabledUserSkills: [] };
   } finally {
     skillsLoading = false;
   }
@@ -67,6 +72,9 @@ function renderSkillsView() {
 
   const projectSkills = skillsData.projectSkills || [];
   const userSkills = skillsData.userSkills || [];
+  const disabledProjectSkills = skillsData.disabledProjectSkills || [];
+  const disabledUserSkills = skillsData.disabledUserSkills || [];
+  const totalDisabled = disabledProjectSkills.length + disabledUserSkills.length;
 
   container.innerHTML = `
     <div class="skills-manager">
@@ -109,7 +117,7 @@ function renderSkillsView() {
           </div>
         ` : `
           <div class="skills-grid grid gap-3">
-            ${projectSkills.map(skill => renderSkillCard(skill, 'project')).join('')}
+            ${projectSkills.map(skill => renderSkillCard(skill, 'project', false)).join('')}
           </div>
         `}
       </div>
@@ -133,11 +141,48 @@ function renderSkillsView() {
           </div>
         ` : `
           <div class="skills-grid grid gap-3">
-            ${userSkills.map(skill => renderSkillCard(skill, 'user')).join('')}
+            ${userSkills.map(skill => renderSkillCard(skill, 'user', false)).join('')}
           </div>
         `}
       </div>
 
+      <!-- Disabled Skills Section -->
+      ${totalDisabled > 0 ? `
+        <div class="skills-section mb-6">
+          <div class="flex items-center justify-between mb-4 cursor-pointer" onclick="toggleDisabledSkillsSection()">
+            <div class="flex items-center gap-2">
+              <i data-lucide="${showDisabledSkills ? 'chevron-down' : 'chevron-right'}" class="w-5 h-5 text-muted-foreground transition-transform"></i>
+              <i data-lucide="eye-off" class="w-5 h-5 text-muted-foreground"></i>
+              <h3 class="text-lg font-semibold text-muted-foreground">${t('skills.disabledSkills')}</h3>
+            </div>
+            <span class="text-sm text-muted-foreground">${totalDisabled} ${t('skills.skillsCount')}</span>
+          </div>
+
+          ${showDisabledSkills ? `
+            ${disabledProjectSkills.length > 0 ? `
+              <div class="mb-4">
+                <div class="flex items-center gap-2 mb-2">
+                  <span class="text-xs px-2 py-0.5 bg-muted text-muted-foreground rounded-full">${t('skills.projectSkills')}</span>
+                </div>
+                <div class="skills-grid grid gap-3">
+                  ${disabledProjectSkills.map(skill => renderSkillCard(skill, 'project', true)).join('')}
+                </div>
+              </div>
+            ` : ''}
+            ${disabledUserSkills.length > 0 ? `
+              <div>
+                <div class="flex items-center gap-2 mb-2">
+                  <span class="text-xs px-2 py-0.5 bg-muted text-muted-foreground rounded-full">${t('skills.userSkills')}</span>
+                </div>
+                <div class="skills-grid grid gap-3">
+                  ${disabledUserSkills.map(skill => renderSkillCard(skill, 'user', true)).join('')}
+                </div>
+              </div>
+            ` : ''}
+          ` : ''}
+        </div>
+      ` : ''}
+
       <!-- Skill Detail Panel -->
       ${selectedSkill ? renderSkillDetailPanel(selectedSkill) : ''}
     </div>
@@ -147,19 +192,19 @@ function renderSkillsView() {
   if (typeof lucide !== 'undefined') lucide.createIcons();
 }
 
-function renderSkillCard(skill, location) {
+function renderSkillCard(skill, location, isDisabled = false) {
   const hasAllowedTools = skill.allowedTools && skill.allowedTools.length > 0;
   const hasSupportingFiles = skill.supportingFiles && skill.supportingFiles.length > 0;
   const locationIcon = location === 'project' ? 'folder' : 'user';
   const locationClass = location === 'project' ? 'text-primary' : 'text-indigo';
   const locationBg = location === 'project' ? 'bg-primary/10' : 'bg-indigo/10';
   const folderName = skill.folderName || skill.name;
+  const cardOpacity = isDisabled ? 'opacity-60' : '';
 
   return `
-    <div class="skill-card bg-card border border-border rounded-lg p-4 hover:shadow-md transition-all cursor-pointer"
-         onclick="showSkillDetail('${escapeHtml(folderName)}', '${location}')">
+    <div class="skill-card bg-card border border-border rounded-lg p-4 hover:shadow-md transition-all ${cardOpacity}">
       <div class="flex items-start justify-between mb-3">
-        <div class="flex items-center gap-3">
+        <div class="flex items-center gap-3 cursor-pointer" onclick="showSkillDetail('${escapeHtml(folderName)}', '${location}')">
           <div class="w-10 h-10 ${locationBg} rounded-lg flex items-center justify-center">
             <i data-lucide="sparkles" class="w-5 h-5 ${locationClass}"></i>
           </div>
@@ -168,27 +213,40 @@ function renderSkillCard(skill, location) {
             ${skill.version ? `<span class="text-xs text-muted-foreground">v${escapeHtml(skill.version)}</span>` : ''}
           </div>
         </div>
-        <div class="flex items-center gap-1">
+        <div class="flex items-center gap-2">
           <span class="inline-flex items-center px-2 py-0.5 text-xs font-medium rounded-full ${locationBg} ${locationClass}">
             <i data-lucide="${locationIcon}" class="w-3 h-3 mr-1"></i>
             ${location}
           </span>
+          <button class="p-1.5 rounded-lg transition-colors ${isDisabled ? 'text-green-600 hover:bg-green-100' : 'text-amber-600 hover:bg-amber-100'}"
+                  data-skill-toggle="${escapeHtml(folderName)}"
+                  onclick="event.stopPropagation(); toggleSkillEnabled('${escapeHtml(folderName)}', '${location}', ${!isDisabled})"
+                  title="${isDisabled ? t('skills.enable') : t('skills.disable')}">
+            <i data-lucide="${isDisabled ? 'toggle-left' : 'toggle-right'}" class="w-4 h-4"></i>
+          </button>
         </div>
       </div>
 
-      <p class="text-sm text-muted-foreground mb-3 line-clamp-2">${escapeHtml(skill.description || t('skills.noDescription'))}</p>
+      <p class="text-sm text-muted-foreground mb-3 line-clamp-2 cursor-pointer" onclick="showSkillDetail('${escapeHtml(folderName)}', '${location}')">${escapeHtml(skill.description || t('skills.noDescription'))}</p>
 
-      <div class="flex items-center gap-3 text-xs text-muted-foreground">
-        ${hasAllowedTools ? `
-          <span class="flex items-center gap-1">
-            <i data-lucide="lock" class="w-3 h-3"></i>
-            ${skill.allowedTools.length} ${t('skills.tools')}
-          </span>
-        ` : ''}
-        ${hasSupportingFiles ? `
-          <span class="flex items-center gap-1">
-            <i data-lucide="file-text" class="w-3 h-3"></i>
-            ${skill.supportingFiles.length} ${t('skills.files')}
+      <div class="flex items-center justify-between text-xs text-muted-foreground">
+        <div class="flex items-center gap-3">
+          ${hasAllowedTools ? `
+            <span class="flex items-center gap-1">
+              <i data-lucide="lock" class="w-3 h-3"></i>
+              ${skill.allowedTools.length} ${t('skills.tools')}
+            </span>
+          ` : ''}
+          ${hasSupportingFiles ? `
+            <span class="flex items-center gap-1">
+              <i data-lucide="file-text" class="w-3 h-3"></i>
+              ${skill.supportingFiles.length} ${t('skills.files')}
+            </span>
+          ` : ''}
+        </div>
+        ${isDisabled && skill.disabledAt ? `
+          <span class="text-xs text-muted-foreground/70">
+            ${t('skills.disabledAt')}: ${formatDisabledDate(skill.disabledAt)}
           </span>
         ` : ''}
       </div>
@@ -373,6 +431,89 @@ function editSkill(skillName, location) {
   }
 }
 
+// ========== Enable/Disable Skills Functions ==========
+
+// Track loading state for skill toggle operations
+var toggleLoadingSkills = {};
+
+async function toggleSkillEnabled(skillName, location, currentlyEnabled) {
+  // Prevent double-click
+  var loadingKey = skillName + '-' + location;
+  if (toggleLoadingSkills[loadingKey]) return;
+
+  var action = currentlyEnabled ? 'disable' : 'enable';
+  var confirmMessage = currentlyEnabled 
+    ? t('skills.disableConfirm', { name: skillName })
+    : t('skills.enableConfirm', { name: skillName });
+  
+  if (!confirm(confirmMessage)) return;
+
+  // Set loading state
+  toggleLoadingSkills[loadingKey] = true;
+  var toggleBtn = document.querySelector('[data-skill-toggle="' + skillName + '"]');
+  if (toggleBtn) {
+    toggleBtn.disabled = true;
+    toggleBtn.innerHTML = '<i data-lucide="loader-2" class="w-4 h-4 animate-spin"></i>';
+    if (window.lucide) lucide.createIcons();
+  }
+
+  try {
+    var response = await fetch('/api/skills/' + encodeURIComponent(skillName) + '/' + action, {
+      method: 'POST',
+      headers: { 'Content-Type': 'application/json' },
+      body: JSON.stringify({ location: location, projectPath: projectPath })
+    });
+
+    if (!response.ok) {
+      // Robust JSON parsing with fallback
+      var errorMessage = 'Operation failed';
+      try {
+        var error = await response.json();
+        errorMessage = error.message || errorMessage;
+      } catch (jsonErr) {
+        errorMessage = response.statusText || errorMessage;
+      }
+      throw new Error(errorMessage);
+    }
+
+    // Close detail panel if open
+    selectedSkill = null;
+
+    // Reload skills data
+    await loadSkillsData();
+    renderSkillsView();
+
+    if (window.showToast) {
+      var message = currentlyEnabled 
+        ? t('skills.disableSuccess', { name: skillName })
+        : t('skills.enableSuccess', { name: skillName });
+      showToast(message, 'success');
+    }
+  } catch (err) {
+    console.error('Failed to toggle skill:', err);
+    if (window.showToast) {
+      showToast(err.message || t('skills.toggleError'), 'error');
+    }
+  } finally {
+    // Clear loading state
+    delete toggleLoadingSkills[loadingKey];
+  }
+}
+
+function toggleDisabledSkillsSection() {
+  showDisabledSkills = !showDisabledSkills;
+  renderSkillsView();
+}
+
+function formatDisabledDate(isoString) {
+  try {
+    const date = new Date(isoString);
+    return date.toLocaleDateString() + ' ' + date.toLocaleTimeString([], { hour: '2-digit', minute: '2-digit' });
+  } catch {
+    return isoString;
+  }
+}
+
 // ========== Create Skill Modal ==========
 var skillCreateState = {
   mode: 'import', // 'import' or 'cli-generate'

package/ccw/src/templates/dashboard.html

@@ -503,11 +503,13 @@
                 <i data-lucide="history" class="nav-icon"></i>
                 <span class="nav-text flex-1" data-i18n="nav.history">History</span>
               </li>
+              <!-- Hidden: CodexLens Manager (feature disabled)
               <li class="nav-item flex items-center gap-2 px-3 py-2.5 text-sm text-muted-foreground hover:bg-hover hover:text-foreground rounded cursor-pointer transition-colors" data-view="codexlens-manager" data-tooltip="CodexLens Manager">
                 <i data-lucide="search-code" class="nav-icon"></i>
                 <span class="nav-text flex-1" data-i18n="nav.codexLensManager">CodexLens</span>
                 <span class="badge px-2 py-0.5 text-xs font-semibold rounded-full bg-hover text-muted-foreground" id="badgeCodexLens">-</span>
               </li>
+              -->
               <li class="nav-item flex items-center gap-2 px-3 py-2.5 text-sm text-muted-foreground hover:bg-hover hover:text-foreground rounded cursor-pointer transition-colors" data-view="api-settings" data-tooltip="API Settings">
                 <i data-lucide="settings" class="nav-icon"></i>
                 <span class="nav-text flex-1" data-i18n="nav.apiSettings">API Settings</span>
@@ -670,6 +672,11 @@
                 <span class="nav-text flex-1" data-i18n="nav.rules">Rules</span>
                 <span class="badge px-2 py-0.5 text-xs font-semibold rounded-full bg-hover text-muted-foreground" id="badgeRules">0</span>
               </li>
+              <li class="nav-item flex items-center gap-2 px-3 py-2.5 text-sm text-muted-foreground hover:bg-hover hover:text-foreground rounded cursor-pointer transition-colors" data-view="commands-manager" data-tooltip="Commands Management">
+                <i data-lucide="terminal" class="nav-icon"></i>
+                <span class="nav-text flex-1" data-i18n="nav.commands">Commands</span>
+                <span class="badge px-2 py-0.5 text-xs font-semibold rounded-full bg-hover text-muted-foreground" id="badgeCommands">0</span>
+              </li>
               <li class="nav-item flex items-center gap-2 px-3 py-2.5 text-sm text-muted-foreground hover:bg-hover hover:text-foreground rounded cursor-pointer transition-colors" data-view="claude-manager" data-tooltip="CLAUDE.md Manager">
                 <i data-lucide="file-code" class="nav-icon"></i>
                 <span class="nav-text flex-1" data-i18n="nav.claudeManager">CLAUDE.md</span>

package/ccw/src/tools/claude-cli-tools.ts

@@ -33,6 +33,11 @@ export interface ClaudeCliTool {
   enabled: boolean;
   primaryModel?: string;
   secondaryModel?: string;
+  /**
+   * Available models for this tool (shown in UI dropdown)
+   * If not provided, defaults will be used based on tool type
+   */
+  availableModels?: string[];
   tags: string[];
   /**
    * Tool type determines routing:
@@ -80,7 +85,6 @@ export interface ClaudeCacheSettings {
 export interface ClaudeCliToolsConfig {
   $schema?: string;
   version: string;
-  models?: Record<string, string[]>;  // PREDEFINED_MODELS
   tools: Record<string, ClaudeCliTool>;  // All tools: builtin, cli-wrapper, api-endpoint
   apiEndpoints?: ClaudeApiEndpoint[];  // @deprecated Use tools with type: 'api-endpoint' instead
   customEndpoints?: ClaudeCustomEndpoint[];  // @deprecated Use tools with type: 'cli-wrapper' or 'api-endpoint' instead
@@ -120,34 +124,14 @@ export interface ClaudeCliCombinedConfig extends ClaudeCliToolsConfig {
 
 // ========== Default Config ==========
 
-// Predefined models for each tool
-const PREDEFINED_MODELS: Record<CliToolName, string[]> = {
-  gemini: ['gemini-2.5-pro', 'gemini-2.5-flash', 'gemini-2.0-flash', 'gemini-1.5-pro', 'gemini-1.5-flash'],
-  qwen: ['coder-model', 'vision-model', 'qwen2.5-coder-32b'],
-  codex: ['gpt-5.2', 'gpt-4.1', 'o4-mini', 'o3'],
-  claude: ['sonnet', 'opus', 'haiku', 'claude-sonnet-4-5-20250929', 'claude-opus-4-5-20251101'],
-  opencode: [
-    'opencode/glm-4.7-free',
-    'opencode/gpt-5-nano',
-    'opencode/grok-code',
-    'opencode/minimax-m2.1-free',
-    'anthropic/claude-sonnet-4-20250514',
-    'anthropic/claude-opus-4-20250514',
-    'openai/gpt-4.1',
-    'openai/o3',
-    'google/gemini-2.5-pro',
-    'google/gemini-2.5-flash'
-  ]
-};
-
 const DEFAULT_TOOLS_CONFIG: ClaudeCliToolsConfig = {
-  version: '3.2.0',
-  models: { ...PREDEFINED_MODELS },
+  version: '3.4.0',
   tools: {
     gemini: {
       enabled: true,
       primaryModel: 'gemini-2.5-pro',
       secondaryModel: 'gemini-2.5-flash',
+      availableModels: ['gemini-2.5-pro', 'gemini-2.5-flash', 'gemini-2.0-flash', 'gemini-2.0-flash-thinking', 'gemini-1.5-pro'],
       tags: [],
       type: 'builtin'
     },
@@ -155,6 +139,7 @@ const DEFAULT_TOOLS_CONFIG: ClaudeCliToolsConfig = {
       enabled: true,
       primaryModel: 'coder-model',
       secondaryModel: 'coder-model',
+      availableModels: ['coder-model', 'vision-model', 'qwen-2.5-coder', 'qwen-2.5-72b'],
       tags: [],
       type: 'builtin'
     },
@@ -162,6 +147,7 @@ const DEFAULT_TOOLS_CONFIG: ClaudeCliToolsConfig = {
       enabled: true,
       primaryModel: 'gpt-5.2',
       secondaryModel: 'gpt-5.2',
+      availableModels: ['gpt-5.2', 'gpt-5', 'gpt5-codex', 'o3', 'o1'],
       tags: [],
       type: 'builtin'
     },
@@ -169,6 +155,7 @@ const DEFAULT_TOOLS_CONFIG: ClaudeCliToolsConfig = {
       enabled: true,
       primaryModel: 'sonnet',
       secondaryModel: 'haiku',
+      availableModels: ['opus', 'sonnet', 'haiku'],
       tags: [],
       type: 'builtin'
     },
@@ -176,6 +163,7 @@ const DEFAULT_TOOLS_CONFIG: ClaudeCliToolsConfig = {
       enabled: true,
       primaryModel: 'opencode/glm-4.7-free',
       secondaryModel: 'opencode/glm-4.7-free',
+      availableModels: ['opencode/glm-4.7-free', 'opencode/deepseek-v3-free'],
       tags: [],
       type: 'builtin'
     }
@@ -260,6 +248,28 @@ function resolveSettingsPath(projectDir: string): { path: string; source: 'proje
 
 // ========== Main Functions ==========
 
+/**
+ * Create a timestamped backup of the config file
+ * @param filePath - Path to the config file to backup
+ * @returns Path to the backup file
+ */
+function backupConfigFile(filePath: string): string {
+  const timestamp = new Date().toISOString().replace(/[:.]/g, '-').split('T')[0] + '-' +
+                    new Date().toISOString().replace(/[:.]/g, '-').split('T')[1].substring(0, 8);
+  const backupPath = `${filePath}.${timestamp}.bak`;
+
+  try {
+    if (fs.existsSync(filePath)) {
+      fs.copyFileSync(filePath, backupPath);
+      debugLog(`[claude-cli-tools] Created backup: ${backupPath}`);
+    }
+    return backupPath;
+  } catch (err) {
+    console.warn('[claude-cli-tools] Failed to create backup:', err);
+    return '';
+  }
+}
+
 /**
  * Ensure tool has required fields (for backward compatibility)
  */
@@ -274,18 +284,31 @@ function ensureToolTags(tool: Partial<ClaudeCliTool>): ClaudeCliTool {
 }
 
 /**
- * Migrate config from older versions to v3.2.0
+ * Migrate config from older versions to v3.3.0
  * v3.2.0: All endpoints (cli-wrapper, api-endpoint) are in tools with type field
+ * v3.3.0: Remove models field (moved to system reference)
  */
-function migrateConfig(config: any, projectDir: string): ClaudeCliToolsConfig {
+function migrateConfig(config: any, projectDir: string, configPath?: string): ClaudeCliToolsConfig {
   const version = parseFloat(config.version || '1.0');
+  let needsMigration = false;
 
-  // Already v3.2+, no migration needed
-  if (version >= 3.2) {
+  // Check if models field exists (v3.3.0 migration)
+  if (config.models) {
+    needsMigration = true;
+    debugLog('[claude-cli-tools] Detected models field, will remove (moved to system reference)');
+  }
+
+  // Already v3.3+, no migration needed
+  if (version >= 3.3 && !needsMigration) {
     return config as ClaudeCliToolsConfig;
   }
 
-  debugLog(`[claude-cli-tools] Migrating config from v${config.version || '1.0'} to v3.2.0`);
+  // Create backup before migration if config path is provided
+  if (configPath && (version < 3.3 || needsMigration)) {
+    backupConfigFile(configPath);
+  }
+
+  debugLog(`[claude-cli-tools] Migrating config from v${config.version || '1.0'} to v3.3.0`);
 
   // Try to load legacy cli-config.json for model data
   let legacyCliConfig: any = null;
@@ -372,9 +395,13 @@ function migrateConfig(config: any, projectDir: string): ClaudeCliToolsConfig {
     }
   }
 
+  // Remove models field if it exists (v3.3.0 migration)
+  if (config.models) {
+    debugLog('[claude-cli-tools] Removed models field (moved to system reference)');
+  }
+
   return {
-    version: '3.2.0',
-    models: { ...PREDEFINED_MODELS },
+    version: '3.3.0',
     tools: migratedTools,
     $schema: config.$schema
   };
@@ -485,9 +512,8 @@ export function loadClaudeCliTools(projectDir: string): ClaudeCliToolsConfig & {
     const content = fs.readFileSync(resolved.path, 'utf-8');
     const parsed = JSON.parse(content) as Partial<ClaudeCliCombinedConfig>;
 
-    // Migrate older versions to v3.2.0
-    const migrated = migrateConfig(parsed, projectDir);
-    const needsSave = migrated.version !== parsed.version;
+    // Migrate older versions to v3.3.0 (pass config path for backup)
+    const migrated = migrateConfig(parsed, projectDir, resolved.path);
 
     // Load user-configured tools only (defaults NOT merged)
     const mergedTools: Record<string, ClaudeCliTool> = {};
@@ -501,14 +527,15 @@ export function loadClaudeCliTools(projectDir: string): ClaudeCliToolsConfig & {
 
     const config: ClaudeCliToolsConfig & { _source?: string } = {
       version: migrated.version || DEFAULT_TOOLS_CONFIG.version,
-      models: migrated.models || DEFAULT_TOOLS_CONFIG.models,
       tools: mergedTools,
       $schema: migrated.$schema,
       _source: resolved.source
     };
 
-    // Save migrated config if version changed
-    if (needsSave) {
+    // Save migrated config if version changed or models field exists
+    const needsVersionUpdate = migrated.version !== (parsed as any).version;
+    const hasModelsField = (parsed as any).models !== undefined;
+    if (needsVersionUpdate || hasModelsField) {
       try {
         saveClaudeCliTools(projectDir, config);
         debugLog(`[claude-cli-tools] Saved migrated config to: ${resolved.path}`);
@@ -674,19 +701,116 @@ export function getDefaultTool(projectDir: string): string {
   }
 }
 
+// ========== Settings Persistence Functions ==========
+
+/**
+ * Update prompt format setting
+ * @param projectDir - Project directory path
+ * @param format - Prompt format: 'plain' | 'yaml' | 'json'
+ * @returns Updated settings config
+ */
+export function setPromptFormat(
+  projectDir: string,
+  format: 'plain' | 'yaml' | 'json'
+): ClaudeCliSettingsConfig {
+  const settings = loadClaudeCliSettings(projectDir);
+  settings.promptFormat = format;
+  saveClaudeCliSettings(projectDir, settings);
+  return settings;
+}
+
+/**
+ * Get prompt format setting
+ * @param projectDir - Project directory path
+ * @returns Current prompt format or 'plain' as fallback
+ */
+export function getPromptFormat(projectDir: string): 'plain' | 'yaml' | 'json' {
+  try {
+    const settings = loadClaudeCliSettings(projectDir);
+    return settings.promptFormat || 'plain';
+  } catch {
+    return 'plain';
+  }
+}
+
+/**
+ * Update smart context enabled setting
+ * @param projectDir - Project directory path
+ * @param enabled - Whether smart context is enabled
+ * @returns Updated settings config
+ */
+export function setSmartContextEnabled(
+  projectDir: string,
+  enabled: boolean
+): ClaudeCliSettingsConfig {
+  const settings = loadClaudeCliSettings(projectDir);
+  settings.smartContext = {
+    ...settings.smartContext,
+    enabled
+  };
+  saveClaudeCliSettings(projectDir, settings);
+  return settings;
+}
+
+/**
+ * Get smart context enabled setting
+ * @param projectDir - Project directory path
+ * @returns Current smart context status or false as fallback
+ */
+export function getSmartContextEnabled(projectDir: string): boolean {
+  try {
+    const settings = loadClaudeCliSettings(projectDir);
+    return settings.smartContext?.enabled ?? false;
+  } catch {
+    return false;
+  }
+}
+
+/**
+ * Update native resume setting
+ * @param projectDir - Project directory path
+ * @param enabled - Whether native resume is enabled
+ * @returns Updated settings config
+ */
+export function setNativeResume(
+  projectDir: string,
+  enabled: boolean
+): ClaudeCliSettingsConfig {
+  const settings = loadClaudeCliSettings(projectDir);
+  settings.nativeResume = enabled;
+  saveClaudeCliSettings(projectDir, settings);
+  return settings;
+}
+
+/**
+ * Get native resume setting
+ * @param projectDir - Project directory path
+ * @returns Current native resume status or true as fallback
+ */
+export function getNativeResume(projectDir: string): boolean {
+  try {
+    const settings = loadClaudeCliSettings(projectDir);
+    return settings.nativeResume ?? true;
+  } catch {
+    return true;
+  }
+}
+
 /**
  * Add API endpoint as a tool with type: 'api-endpoint'
  * Usage: --tool <name> or --tool custom --model <id>
  */
 export function addClaudeApiEndpoint(
   projectDir: string,
-  endpoint: { id: string; name: string; enabled: boolean }
+  endpoint: { id: string; name: string; enabled: boolean; model?: string }
 ): ClaudeCliToolsConfig {
   const config = loadClaudeCliTools(projectDir);
 
   // Add as a tool with type: 'api-endpoint'
   config.tools[endpoint.name] = {
     enabled: endpoint.enabled,
+    primaryModel: endpoint.model,  // Use endpoint.model as primaryModel (can be overridden via --model)
+    secondaryModel: endpoint.model,  // Same as primary for fallback
     tags: [],
     type: 'api-endpoint',
     id: endpoint.id  // Store endpoint ID for settings lookup
@@ -879,21 +1003,8 @@ export function getContextToolsPath(provider: 'codexlens' | 'ace' | 'none'): str
 }
 
 // ========== Model Configuration Functions ==========
-
-/**
- * Get predefined models for a specific tool
- */
-export function getPredefinedModels(tool: string): string[] {
-  const toolName = tool as CliToolName;
-  return PREDEFINED_MODELS[toolName] ? [...PREDEFINED_MODELS[toolName]] : [];
-}
-
-/**
- * Get all predefined models
- */
-export function getAllPredefinedModels(): Record<string, string[]> {
-  return { ...PREDEFINED_MODELS };
-}
+// NOTE: Model reference data has been moved to system reference (src/config/provider-models.ts)
+// User configuration only manages primaryModel/secondaryModel per tool via tools.{tool}
 
 /**
  * Get tool configuration (compatible with cli-config-manager interface)
@@ -937,6 +1048,7 @@ export function updateToolConfig(
     enabled: boolean;
     primaryModel: string;
     secondaryModel: string;
+    availableModels: string[];
     tags: string[];
     envFile: string | null;
   }>
@@ -953,6 +1065,9 @@ export function updateToolConfig(
     if (updates.secondaryModel !== undefined) {
       config.tools[tool].secondaryModel = updates.secondaryModel;
     }
+    if (updates.availableModels !== undefined) {
+      config.tools[tool].availableModels = updates.availableModels;
+    }
     if (updates.tags !== undefined) {
       config.tools[tool].tags = updates.tags;
     }
@@ -995,16 +1110,15 @@ export function isToolEnabled(projectDir: string, tool: string): boolean {
 }
 
 /**
- * Get full config response for API (includes predefined models)
+ * Get full config response for API
+ * Note: Provider model reference has been moved to system reference (see provider-routes.ts)
  */
 export function getFullConfigResponse(projectDir: string): {
   config: ClaudeCliToolsConfig;
-  predefinedModels: Record<string, string[]>;
 } {
   const config = loadClaudeCliTools(projectDir);
   return {
-    config,
-    predefinedModels: { ...PREDEFINED_MODELS }
+    config
   };
 }