claude-code-workflow 6.2.5 → 6.2.6

package/codex-lens/src/codexlens/storage/index_tree.py

@@ -0,0 +1,776 @@
+"""Hierarchical index tree builder for CodexLens.
+
+Constructs a bottom-up directory index tree with parallel processing support.
+Each directory maintains its own _index.db with files and subdirectory links.
+"""
+
+from __future__ import annotations
+
+import logging
+import os
+import time
+from concurrent.futures import ProcessPoolExecutor, as_completed
+from dataclasses import dataclass
+from pathlib import Path
+from typing import Dict, List, Optional, Set
+
+from codexlens.config import Config
+from codexlens.parsers.factory import ParserFactory
+from codexlens.storage.dir_index import DirIndexStore
+from codexlens.storage.path_mapper import PathMapper
+from codexlens.storage.registry import ProjectInfo, RegistryStore
+
+
+@dataclass
+class BuildResult:
+    """Complete build operation result."""
+
+    project_id: int
+    source_root: Path
+    index_root: Path
+    total_files: int
+    total_dirs: int
+    errors: List[str]
+
+
+@dataclass
+class DirBuildResult:
+    """Single directory build result."""
+
+    source_path: Path
+    index_path: Path
+    files_count: int
+    symbols_count: int
+    subdirs: List[str]  # Subdirectory names
+    error: Optional[str] = None
+
+
+class IndexTreeBuilder:
+    """Hierarchical index tree builder with parallel processing.
+
+    Builds directory indexes bottom-up to enable proper subdirectory linking.
+    Each directory gets its own _index.db containing:
+    - Files in that directory
+    - Links to child directory indexes
+    - Symbols and FTS5 search
+
+    Attributes:
+        registry: Global project registry
+        mapper: Path mapping between source and index
+        config: CodexLens configuration
+        parser_factory: Parser factory for symbol extraction
+        logger: Logger instance
+        IGNORE_DIRS: Set of directory names to skip during indexing
+    """
+
+    # Directories to skip during indexing
+    IGNORE_DIRS: Set[str] = {
+        ".git",
+        ".venv",
+        "venv",
+        "node_modules",
+        "__pycache__",
+        ".codexlens",
+        ".idea",
+        ".vscode",
+    }
+
+    def __init__(
+        self, registry: RegistryStore, mapper: PathMapper, config: Config = None, incremental: bool = True
+    ):
+        """Initialize the index tree builder.
+
+        Args:
+            registry: Global registry store for project tracking
+            mapper: Path mapper for source to index conversions
+            config: CodexLens configuration (uses defaults if None)
+            incremental: Enable incremental indexing (default True)
+        """
+        self.registry = registry
+        self.mapper = mapper
+        self.config = config or Config()
+        self.parser_factory = ParserFactory(self.config)
+        self.logger = logging.getLogger(__name__)
+        self.incremental = incremental
+
+    def build(
+        self,
+        source_root: Path,
+        languages: List[str] = None,
+        workers: int = None,
+        force_full: bool = False,
+    ) -> BuildResult:
+        """Build complete index tree for a project.
+
+        Process:
+        1. Register project in registry
+        2. Collect all directories grouped by depth
+        3. Build indexes bottom-up (deepest first)
+        4. Link subdirectories to parents
+        5. Update project statistics
+        6. Cleanup deleted files (if incremental mode)
+
+        Args:
+            source_root: Project root directory to index
+            languages: Optional list of language IDs to limit indexing
+            workers: Number of parallel worker processes
+            force_full: Force full reindex (override incremental mode)
+
+        Returns:
+            BuildResult with statistics and errors
+
+        Raises:
+            ValueError: If source_root doesn't exist
+        """
+        source_root = source_root.resolve()
+        if not source_root.exists():
+            raise ValueError(f"Source root does not exist: {source_root}")
+
+        # Auto-detect optimal worker count if not specified
+        if workers is None:
+            workers = min(os.cpu_count() or 4, 16)  # Cap at 16 workers
+            self.logger.debug("Auto-detected %d workers for parallel indexing", workers)
+
+        # Override incremental mode if force_full is True
+        use_incremental = self.incremental and not force_full
+        if force_full:
+            self.logger.info("Building index tree for %s (FULL reindex)", source_root)
+        else:
+            self.logger.info("Building index tree for %s (incremental=%s)", source_root, use_incremental)
+
+        # Register project
+        index_root = self.mapper.source_to_index_dir(source_root)
+        project_info = self.registry.register_project(source_root, index_root)
+
+        # Report progress: discovering files (5%)
+        print("Discovering files...", flush=True)
+
+        # Collect directories by depth
+        dirs_by_depth = self._collect_dirs_by_depth(source_root, languages)
+
+        if not dirs_by_depth:
+            self.logger.warning("No indexable directories found in %s", source_root)
+            return BuildResult(
+                project_id=project_info.id,
+                source_root=source_root,
+                index_root=index_root,
+                total_files=0,
+                total_dirs=0,
+                errors=["No indexable directories found"],
+            )
+
+        # Calculate total directories for progress tracking
+        total_dirs_to_process = sum(len(dirs) for dirs in dirs_by_depth.values())
+        processed_dirs = 0
+
+        # Report progress: building index (10%)
+        print("Building index...", flush=True)
+
+        total_files = 0
+        total_dirs = 0
+        all_errors: List[str] = []
+        all_results: List[DirBuildResult] = []  # Store all results for subdir linking
+
+        # Build bottom-up (highest depth first)
+        max_depth = max(dirs_by_depth.keys())
+        for depth in range(max_depth, -1, -1):
+            if depth not in dirs_by_depth:
+                continue
+
+            dirs = dirs_by_depth[depth]
+            self.logger.info("Building %d directories at depth %d", len(dirs), depth)
+
+            # Build directories at this level in parallel
+            results = self._build_level_parallel(dirs, languages, workers)
+            all_results.extend(results)
+
+            # Process results
+            for result in results:
+                if result.error:
+                    all_errors.append(f"{result.source_path}: {result.error}")
+                    processed_dirs += 1
+                    continue
+
+                total_files += result.files_count
+                total_dirs += 1
+                processed_dirs += 1
+
+                # Report progress for each processed directory (10-80%)
+                # Use "Processing file" format for frontend parser compatibility
+                progress_percent = 10 + int((processed_dirs / total_dirs_to_process) * 70)
+                print(f"Processing file {processed_dirs}/{total_dirs_to_process}: {result.source_path.name}", flush=True)
+
+                # Register directory in registry
+                self.registry.register_dir(
+                    project_id=project_info.id,
+                    source_path=result.source_path,
+                    index_path=result.index_path,
+                    depth=self.mapper.get_relative_depth(result.source_path, source_root),
+                    files_count=result.files_count,
+                )
+
+        # Report progress: linking subdirectories (80%)
+        print("Linking subdirectories...", flush=True)
+
+        # After building all directories, link subdirectories to parents
+        # This needs to happen after all indexes exist
+        for result in all_results:
+            if result.error:
+                continue
+            # Link children to this directory
+            self._link_children_to_parent(result.source_path, all_results)
+
+        # Cleanup deleted files if in incremental mode
+        if use_incremental:
+            # Report progress: cleaning up (90%)
+            print("Cleaning up deleted files...", flush=True)
+            self.logger.info("Cleaning up deleted files...")
+            total_deleted = 0
+            for result in all_results:
+                if result.error:
+                    continue
+                try:
+                    with DirIndexStore(result.index_path) as store:
+                        deleted_count = store.cleanup_deleted_files(result.source_path)
+                        total_deleted += deleted_count
+                        if deleted_count > 0:
+                            self.logger.debug("Removed %d deleted files from %s", deleted_count, result.source_path)
+                except Exception as exc:
+                    self.logger.warning("Cleanup failed for %s: %s", result.source_path, exc)
+
+            if total_deleted > 0:
+                self.logger.info("Removed %d deleted files from index", total_deleted)
+
+        # Report progress: finalizing (95%)
+        print("Finalizing...", flush=True)
+
+        # Update project statistics
+        self.registry.update_project_stats(source_root, total_files, total_dirs)
+
+        # Report completion (100%)
+        print(f"Indexed {total_files} files", flush=True)
+
+        self.logger.info(
+            "Index build complete: %d files, %d directories, %d errors",
+            total_files,
+            total_dirs,
+            len(all_errors),
+        )
+
+        return BuildResult(
+            project_id=project_info.id,
+            source_root=source_root,
+            index_root=index_root,
+            total_files=total_files,
+            total_dirs=total_dirs,
+            errors=all_errors,
+        )
+
+    def update_subtree(
+        self,
+        source_path: Path,
+        languages: List[str] = None,
+        workers: int = None,
+    ) -> BuildResult:
+        """Incrementally update a subtree.
+
+        Rebuilds indexes for the specified directory and all subdirectories.
+        Useful for incremental updates when only part of the tree changed.
+
+        Args:
+            source_path: Root of subtree to update
+            languages: Optional list of language IDs to limit indexing
+            workers: Number of parallel worker processes
+
+        Returns:
+            BuildResult for the subtree
+
+        Raises:
+            ValueError: If source_path is not indexed
+        """
+        source_path = source_path.resolve()
+        project_root = self.mapper.get_project_root(source_path)
+
+        # Get project info
+        project_info = self.registry.get_project(project_root)
+        if not project_info:
+            raise ValueError(f"Directory not indexed: {source_path}")
+
+        self.logger.info("Updating subtree at %s", source_path)
+
+        # Use build logic but start from source_path
+        return self.build(source_path, languages, workers)
+
+    def rebuild_dir(self, source_path: Path) -> DirBuildResult:
+        """Rebuild index for a single directory.
+
+        Only rebuilds the specified directory, does not touch subdirectories.
+        Useful for updating a single directory after file changes.
+
+        Args:
+            source_path: Directory to rebuild
+
+        Returns:
+            DirBuildResult for the directory
+        """
+        source_path = source_path.resolve()
+        self.logger.info("Rebuilding directory %s", source_path)
+        return self._build_single_dir(source_path)
+
+    # === Internal Methods ===
+
+    def _collect_dirs_by_depth(
+        self, source_root: Path, languages: List[str] = None
+    ) -> Dict[int, List[Path]]:
+        """Collect all indexable directories grouped by depth.
+
+        Walks the directory tree and groups directories by their depth
+        relative to source_root. Depth 0 is the root itself.
+
+        Args:
+            source_root: Root directory to start from
+            languages: Optional language filter
+
+        Returns:
+            Dictionary mapping depth to list of directory paths
+            Example: {0: [root], 1: [src, tests], 2: [src/api, src/utils]}
+        """
+        source_root = source_root.resolve()
+        dirs_by_depth: Dict[int, List[Path]] = {}
+
+        # Always include the root directory at depth 0 for chain search entry point
+        dirs_by_depth[0] = [source_root]
+
+        for root, dirnames, _ in os.walk(source_root):
+            # Filter out ignored directories
+            dirnames[:] = [
+                d
+                for d in dirnames
+                if d not in self.IGNORE_DIRS and not d.startswith(".")
+            ]
+
+            root_path = Path(root)
+
+            # Skip root (already added)
+            if root_path == source_root:
+                continue
+
+            # Check if this directory should be indexed
+            if not self._should_index_dir(root_path, languages):
+                continue
+
+            # Calculate depth relative to source_root
+            try:
+                depth = len(root_path.relative_to(source_root).parts)
+            except ValueError:
+                continue
+
+            if depth not in dirs_by_depth:
+                dirs_by_depth[depth] = []
+
+            dirs_by_depth[depth].append(root_path)
+
+        return dirs_by_depth
+
+    def _should_index_dir(self, dir_path: Path, languages: List[str] = None) -> bool:
+        """Check if directory should be indexed.
+
+        A directory is indexed if:
+        1. It's not in IGNORE_DIRS
+        2. It doesn't start with '.'
+        3. It contains at least one supported language file
+
+        Args:
+            dir_path: Directory to check
+            languages: Optional language filter
+
+        Returns:
+            True if directory should be indexed
+        """
+        # Check directory name
+        if dir_path.name in self.IGNORE_DIRS or dir_path.name.startswith("."):
+            return False
+
+        # Check for supported files in this directory
+        source_files = self._iter_source_files(dir_path, languages)
+        return len(source_files) > 0
+
+    def _build_level_parallel(
+        self, dirs: List[Path], languages: List[str], workers: int
+    ) -> List[DirBuildResult]:
+        """Build multiple directories in parallel.
+
+        Uses ProcessPoolExecutor to build directories concurrently.
+        All directories at the same level are independent and can be
+        processed in parallel.
+
+        Args:
+            dirs: List of directories to build
+            languages: Language filter
+            workers: Number of worker processes
+
+        Returns:
+            List of DirBuildResult objects
+        """
+        results: List[DirBuildResult] = []
+
+        if not dirs:
+            return results
+
+        # For single directory, avoid overhead of process pool
+        if len(dirs) == 1:
+            result = self._build_single_dir(dirs[0], languages)
+            return [result]
+
+        # Prepare arguments for worker processes
+        config_dict = {
+            "data_dir": str(self.config.data_dir),
+            "supported_languages": self.config.supported_languages,
+            "parsing_rules": self.config.parsing_rules,
+        }
+
+        worker_args = [
+            (
+                dir_path,
+                self.mapper.source_to_index_db(dir_path),
+                languages,
+                config_dict,
+            )
+            for dir_path in dirs
+        ]
+
+        # Execute in parallel
+        with ProcessPoolExecutor(max_workers=workers) as executor:
+            futures = {
+                executor.submit(_build_dir_worker, args): args[0]
+                for args in worker_args
+            }
+
+            for future in as_completed(futures):
+                try:
+                    result = future.result()
+                    results.append(result)
+                except Exception as exc:
+                    dir_path = futures[future]
+                    self.logger.error("Failed to build %s: %s", dir_path, exc)
+                    results.append(
+                        DirBuildResult(
+                            source_path=dir_path,
+                            index_path=self.mapper.source_to_index_db(dir_path),
+                            files_count=0,
+                            symbols_count=0,
+                            subdirs=[],
+                            error=str(exc),
+                        )
+                    )
+
+        return results
+
+    def _build_single_dir(
+        self, dir_path: Path, languages: List[str] = None
+    ) -> DirBuildResult:
+        """Build index for a single directory.
+
+        Creates _index.db and indexes all files in the directory.
+        Does not recurse into subdirectories.
+
+        Args:
+            dir_path: Directory to index
+            languages: Optional language filter
+
+        Returns:
+            DirBuildResult with statistics and subdirectory list
+        """
+        dir_path = dir_path.resolve()
+        index_db_path = self.mapper.source_to_index_db(dir_path)
+
+        try:
+            # Ensure index directory exists
+            index_db_path.parent.mkdir(parents=True, exist_ok=True)
+
+            # Create directory index
+            store = DirIndexStore(index_db_path)
+            store.initialize()
+
+            # Get source files in this directory only
+            source_files = self._iter_source_files(dir_path, languages)
+
+            files_count = 0
+            symbols_count = 0
+            skipped_count = 0
+
+            for file_path in source_files:
+                try:
+                    # Check if file needs reindexing (incremental mode)
+                    if self.incremental and not store.needs_reindex(file_path):
+                        skipped_count += 1
+                        continue
+
+                    # Read and parse file
+                    text = file_path.read_text(encoding="utf-8", errors="ignore")
+                    language_id = self.config.language_for_path(file_path)
+                    if not language_id:
+                        continue
+
+                    parser = self.parser_factory.get_parser(language_id)
+                    indexed_file = parser.parse(text, file_path)
+
+                    # Add to directory index
+                    store.add_file(
+                        name=file_path.name,
+                        full_path=file_path,
+                        content=text,
+                        language=language_id,
+                        symbols=indexed_file.symbols,
+                    )
+
+                    files_count += 1
+                    symbols_count += len(indexed_file.symbols)
+
+                except Exception as exc:
+                    self.logger.debug("Failed to index %s: %s", file_path, exc)
+                    continue
+
+            # Get list of subdirectories
+            subdirs = [
+                d.name
+                for d in dir_path.iterdir()
+                if d.is_dir()
+                and d.name not in self.IGNORE_DIRS
+                and not d.name.startswith(".")
+            ]
+
+            store.close()
+
+            if skipped_count > 0:
+                self.logger.debug(
+                    "Built %s: %d files indexed, %d skipped (unchanged), %d symbols, %d subdirs",
+                    dir_path,
+                    files_count,
+                    skipped_count,
+                    symbols_count,
+                    len(subdirs),
+                )
+            else:
+                self.logger.debug(
+                    "Built %s: %d files, %d symbols, %d subdirs",
+                    dir_path,
+                    files_count,
+                    symbols_count,
+                    len(subdirs),
+                )
+
+            return DirBuildResult(
+                source_path=dir_path,
+                index_path=index_db_path,
+                files_count=files_count,
+                symbols_count=symbols_count,
+                subdirs=subdirs,
+            )
+
+        except Exception as exc:
+            self.logger.error("Failed to build directory %s: %s", dir_path, exc)
+            return DirBuildResult(
+                source_path=dir_path,
+                index_path=index_db_path,
+                files_count=0,
+                symbols_count=0,
+                subdirs=[],
+                error=str(exc),
+            )
+
+    def _link_children_to_parent(
+        self, parent_path: Path, all_results: List[DirBuildResult]
+    ) -> None:
+        """Link child directory indexes to parent's subdirs table.
+
+        Finds all direct children of parent_path in all_results and
+        registers them as subdirectories in the parent's index.
+
+        Args:
+            parent_path: Parent directory path
+            all_results: List of all build results
+        """
+        parent_index_db = self.mapper.source_to_index_db(parent_path)
+
+        try:
+            store = DirIndexStore(parent_index_db)
+            store.initialize()
+
+            for result in all_results:
+                # Only register direct children (parent is one level up)
+                if result.source_path.parent != parent_path:
+                    continue
+
+                if result.error:
+                    continue
+
+                # Register subdirectory link
+                store.register_subdir(
+                    name=result.source_path.name,
+                    index_path=result.index_path,
+                    files_count=result.files_count,
+                    direct_files=result.files_count,
+                )
+                self.logger.debug(
+                    "Linked %s to parent %s",
+                    result.source_path.name,
+                    parent_path,
+                )
+
+            store.close()
+
+        except Exception as exc:
+            self.logger.error(
+                "Failed to link children to %s: %s", parent_path, exc
+            )
+
+    def _iter_source_files(
+        self, dir_path: Path, languages: List[str] = None
+    ) -> List[Path]:
+        """Iterate source files in directory (non-recursive).
+
+        Returns files in the specified directory that match language filters.
+        Does not recurse into subdirectories.
+
+        Args:
+            dir_path: Directory to scan
+            languages: Optional language filter
+
+        Returns:
+            List of source file paths
+        """
+        files: List[Path] = []
+
+        if not dir_path.is_dir():
+            return files
+
+        for item in dir_path.iterdir():
+            if not item.is_file():
+                continue
+
+            if item.name.startswith("."):
+                continue
+
+            # Check language support
+            language_id = self.config.language_for_path(item)
+            if not language_id:
+                continue
+
+            # Apply language filter
+            if languages and language_id not in languages:
+                continue
+
+            files.append(item)
+
+        return files
+
+
+# === Worker Function for ProcessPoolExecutor ===
+
+
+def _build_dir_worker(args: tuple) -> DirBuildResult:
+    """Worker function for parallel directory building.
+
+    Must be at module level for ProcessPoolExecutor pickling.
+    Reconstructs necessary objects from serializable arguments.
+
+    Args:
+        args: Tuple of (dir_path, index_db_path, languages, config_dict)
+
+    Returns:
+        DirBuildResult for the directory
+    """
+    dir_path, index_db_path, languages, config_dict = args
+
+    # Reconstruct config
+    config = Config(
+        data_dir=Path(config_dict["data_dir"]),
+        supported_languages=config_dict["supported_languages"],
+        parsing_rules=config_dict["parsing_rules"],
+    )
+
+    parser_factory = ParserFactory(config)
+
+    try:
+        # Ensure index directory exists
+        index_db_path.parent.mkdir(parents=True, exist_ok=True)
+
+        # Create directory index
+        store = DirIndexStore(index_db_path)
+        store.initialize()
+
+        files_count = 0
+        symbols_count = 0
+
+        # Index files in this directory
+        for item in dir_path.iterdir():
+            if not item.is_file():
+                continue
+
+            if item.name.startswith("."):
+                continue
+
+            language_id = config.language_for_path(item)
+            if not language_id:
+                continue
+
+            if languages and language_id not in languages:
+                continue
+
+            try:
+                text = item.read_text(encoding="utf-8", errors="ignore")
+                parser = parser_factory.get_parser(language_id)
+                indexed_file = parser.parse(text, item)
+
+                store.add_file(
+                    name=item.name,
+                    full_path=item,
+                    content=text,
+                    language=language_id,
+                    symbols=indexed_file.symbols,
+                )
+
+                files_count += 1
+                symbols_count += len(indexed_file.symbols)
+
+            except Exception:
+                continue
+
+        # Get subdirectories
+        ignore_dirs = {
+            ".git",
+            ".venv",
+            "venv",
+            "node_modules",
+            "__pycache__",
+            ".codexlens",
+            ".idea",
+            ".vscode",
+        }
+
+        subdirs = [
+            d.name
+            for d in dir_path.iterdir()
+            if d.is_dir() and d.name not in ignore_dirs and not d.name.startswith(".")
+        ]
+
+        store.close()
+
+        return DirBuildResult(
+            source_path=dir_path,
+            index_path=index_db_path,
+            files_count=files_count,
+            symbols_count=symbols_count,
+            subdirs=subdirs,
+        )
+
+    except Exception as exc:
+        return DirBuildResult(
+            source_path=dir_path,
+            index_path=index_db_path,
+            files_count=0,
+            symbols_count=0,
+            subdirs=[],
+            error=str(exc),
+        )