claude-code-workflow 6.1.3 → 6.2.1

package/src/core/routes/mcp-routes.ts

@@ -0,0 +1,1271 @@
+// @ts-nocheck
+/**
+ * MCP Routes Module
+ * Handles all MCP-related API endpoints
+ */
+import type { IncomingMessage, ServerResponse } from 'http';
+import { readFileSync, writeFileSync, existsSync, mkdirSync, readdirSync, statSync } from 'fs';
+import { join, dirname } from 'path';
+import { homedir } from 'os';
+import * as McpTemplatesDb from './mcp-templates-db.js';
+
+// Claude config file path
+const CLAUDE_CONFIG_PATH = join(homedir(), '.claude.json');
+
+// Codex config file path (TOML format)
+const CODEX_CONFIG_PATH = join(homedir(), '.codex', 'config.toml');
+
+// Workspace root path for scanning .mcp.json files
+let WORKSPACE_ROOT = process.cwd();
+
+// ========================================
+// TOML Parser for Codex Config
+// ========================================
+
+/**
+ * Simple TOML parser for Codex config.toml
+ * Supports basic types: strings, numbers, booleans, arrays, inline tables
+ */
+function parseToml(content: string): Record<string, any> {
+  const result: Record<string, any> = {};
+  let currentSection: string[] = [];
+  const lines = content.split('\n');
+
+  for (let i = 0; i < lines.length; i++) {
+    let line = lines[i].trim();
+
+    // Skip empty lines and comments
+    if (!line || line.startsWith('#')) continue;
+
+    // Handle section headers [section] or [section.subsection]
+    const sectionMatch = line.match(/^\[([^\]]+)\]$/);
+    if (sectionMatch) {
+      currentSection = sectionMatch[1].split('.');
+      // Ensure nested sections exist
+      let obj = result;
+      for (const part of currentSection) {
+        if (!obj[part]) obj[part] = {};
+        obj = obj[part];
+      }
+      continue;
+    }
+
+    // Handle key = value pairs
+    const keyValueMatch = line.match(/^([a-zA-Z_][a-zA-Z0-9_]*)\s*=\s*(.+)$/);
+    if (keyValueMatch) {
+      const key = keyValueMatch[1];
+      const rawValue = keyValueMatch[2].trim();
+      const value = parseTomlValue(rawValue);
+
+      // Navigate to current section
+      let obj = result;
+      for (const part of currentSection) {
+        if (!obj[part]) obj[part] = {};
+        obj = obj[part];
+      }
+      obj[key] = value;
+    }
+  }
+
+  return result;
+}
+
+/**
+ * Parse a TOML value
+ */
+function parseTomlValue(value: string): any {
+  // String (double-quoted)
+  if (value.startsWith('"') && value.endsWith('"')) {
+    return value.slice(1, -1).replace(/\\"/g, '"').replace(/\\\\/g, '\\');
+  }
+
+  // String (single-quoted - literal)
+  if (value.startsWith("'") && value.endsWith("'")) {
+    return value.slice(1, -1);
+  }
+
+  // Boolean
+  if (value === 'true') return true;
+  if (value === 'false') return false;
+
+  // Number
+  if (/^-?\d+(\.\d+)?$/.test(value)) {
+    return value.includes('.') ? parseFloat(value) : parseInt(value, 10);
+  }
+
+  // Array
+  if (value.startsWith('[') && value.endsWith(']')) {
+    const inner = value.slice(1, -1).trim();
+    if (!inner) return [];
+    // Simple array parsing (handles basic cases)
+    const items: any[] = [];
+    let depth = 0;
+    let current = '';
+    let inString = false;
+    let stringChar = '';
+
+    for (const char of inner) {
+      if (!inString && (char === '"' || char === "'")) {
+        inString = true;
+        stringChar = char;
+        current += char;
+      } else if (inString && char === stringChar) {
+        inString = false;
+        current += char;
+      } else if (!inString && (char === '[' || char === '{')) {
+        depth++;
+        current += char;
+      } else if (!inString && (char === ']' || char === '}')) {
+        depth--;
+        current += char;
+      } else if (!inString && char === ',' && depth === 0) {
+        items.push(parseTomlValue(current.trim()));
+        current = '';
+      } else {
+        current += char;
+      }
+    }
+    if (current.trim()) {
+      items.push(parseTomlValue(current.trim()));
+    }
+    return items;
+  }
+
+  // Inline table { key = value, ... }
+  if (value.startsWith('{') && value.endsWith('}')) {
+    const inner = value.slice(1, -1).trim();
+    if (!inner) return {};
+    const table: Record<string, any> = {};
+    // Simple inline table parsing
+    const pairs = inner.split(',');
+    for (const pair of pairs) {
+      const match = pair.trim().match(/^([a-zA-Z_][a-zA-Z0-9_]*)\s*=\s*(.+)$/);
+      if (match) {
+        table[match[1]] = parseTomlValue(match[2].trim());
+      }
+    }
+    return table;
+  }
+
+  // Return as string if nothing else matches
+  return value;
+}
+
+/**
+ * Serialize object to TOML format for Codex config
+ *
+ * Handles mixed objects containing both simple values and sub-objects.
+ * For example: { command: "cmd", args: [...], env: { KEY: "value" } }
+ * becomes:
+ *   [section]
+ *   command = "cmd"
+ *   args = [...]
+ *   [section.env]
+ *   KEY = "value"
+ */
+function serializeToml(obj: Record<string, any>, prefix: string = ''): string {
+  let result = '';
+
+  for (const [key, value] of Object.entries(obj)) {
+    if (value === null || value === undefined) continue;
+
+    if (typeof value === 'object' && !Array.isArray(value)) {
+      // Handle nested sections (like mcp_servers.server_name)
+      const sectionKey = prefix ? `${prefix}.${key}` : key;
+
+      // Separate simple values from sub-objects
+      const simpleEntries: [string, any][] = [];
+      const objectEntries: [string, any][] = [];
+
+      for (const [subKey, subValue] of Object.entries(value)) {
+        if (subValue === null || subValue === undefined) continue;
+        if (typeof subValue === 'object' && !Array.isArray(subValue)) {
+          objectEntries.push([subKey, subValue]);
+        } else {
+          simpleEntries.push([subKey, subValue]);
+        }
+      }
+
+      // Write section header if there are simple values
+      if (simpleEntries.length > 0) {
+        result += `\n[${sectionKey}]\n`;
+        for (const [subKey, subValue] of simpleEntries) {
+          result += `${subKey} = ${serializeTomlValue(subValue)}\n`;
+        }
+      }
+
+      // Recursively handle sub-objects
+      if (objectEntries.length > 0) {
+        for (const [subKey, subValue] of objectEntries) {
+          const subSectionKey = `${sectionKey}.${subKey}`;
+
+          // Check if sub-object has nested objects
+          const hasNestedObjects = Object.values(subValue).some(
+            v => typeof v === 'object' && v !== null && !Array.isArray(v)
+          );
+
+          if (hasNestedObjects) {
+            // Recursively process nested objects
+            result += serializeToml({ [subKey]: subValue }, sectionKey);
+          } else {
+            // Write sub-section with simple values
+            result += `\n[${subSectionKey}]\n`;
+            for (const [nestedKey, nestedValue] of Object.entries(subValue)) {
+              if (nestedValue !== null && nestedValue !== undefined) {
+                result += `${nestedKey} = ${serializeTomlValue(nestedValue)}\n`;
+              }
+            }
+          }
+        }
+      }
+
+      // If no simple values but has object entries, still need to process
+      if (simpleEntries.length === 0 && objectEntries.length === 0) {
+        // Empty section - write header only
+        result += `\n[${sectionKey}]\n`;
+      }
+    } else if (!prefix) {
+      // Top-level simple values
+      result += `${key} = ${serializeTomlValue(value)}\n`;
+    }
+  }
+
+  return result;
+}
+
+/**
+ * Serialize a value to TOML format
+ */
+function serializeTomlValue(value: any): string {
+  if (typeof value === 'string') {
+    return `"${value.replace(/\\/g, '\\\\').replace(/"/g, '\\"')}"`;
+  }
+  if (typeof value === 'boolean') {
+    return value ? 'true' : 'false';
+  }
+  if (typeof value === 'number') {
+    return String(value);
+  }
+  if (Array.isArray(value)) {
+    return `[${value.map(v => serializeTomlValue(v)).join(', ')}]`;
+  }
+  if (typeof value === 'object' && value !== null) {
+    const pairs = Object.entries(value)
+      .filter(([_, v]) => v !== null && v !== undefined)
+      .map(([k, v]) => `${k} = ${serializeTomlValue(v)}`);
+    return `{ ${pairs.join(', ')} }`;
+  }
+  return String(value);
+}
+
+// ========================================
+// Codex MCP Functions
+// ========================================
+
+/**
+ * Read Codex config.toml and extract MCP servers
+ */
+function getCodexMcpConfig(): { servers: Record<string, any>; configPath: string; exists: boolean } {
+  try {
+    if (!existsSync(CODEX_CONFIG_PATH)) {
+      return { servers: {}, configPath: CODEX_CONFIG_PATH, exists: false };
+    }
+
+    const content = readFileSync(CODEX_CONFIG_PATH, 'utf8');
+    const config = parseToml(content);
+
+    // MCP servers are under [mcp_servers] section
+    const mcpServers = config.mcp_servers || {};
+
+    return {
+      servers: mcpServers,
+      configPath: CODEX_CONFIG_PATH,
+      exists: true
+    };
+  } catch (error: unknown) {
+    console.error('Error reading Codex config:', error);
+    return { servers: {}, configPath: CODEX_CONFIG_PATH, exists: false };
+  }
+}
+
+/**
+ * Add or update MCP server in Codex config.toml
+ */
+function addCodexMcpServer(serverName: string, serverConfig: Record<string, any>): { success?: boolean; error?: string } {
+  try {
+    const codexDir = join(homedir(), '.codex');
+
+    // Ensure .codex directory exists
+    if (!existsSync(codexDir)) {
+      mkdirSync(codexDir, { recursive: true });
+    }
+
+    let config: Record<string, any> = {};
+
+    // Read existing config if it exists
+    if (existsSync(CODEX_CONFIG_PATH)) {
+      const content = readFileSync(CODEX_CONFIG_PATH, 'utf8');
+      config = parseToml(content);
+    }
+
+    // Ensure mcp_servers section exists
+    if (!config.mcp_servers) {
+      config.mcp_servers = {};
+    }
+
+    // Convert serverConfig from Claude format to Codex format
+    const codexServerConfig: Record<string, any> = {};
+
+    // Handle STDIO servers (command-based)
+    if (serverConfig.command) {
+      codexServerConfig.command = serverConfig.command;
+      if (serverConfig.args && serverConfig.args.length > 0) {
+        codexServerConfig.args = serverConfig.args;
+      }
+      if (serverConfig.env && Object.keys(serverConfig.env).length > 0) {
+        codexServerConfig.env = serverConfig.env;
+      }
+      if (serverConfig.cwd) {
+        codexServerConfig.cwd = serverConfig.cwd;
+      }
+    }
+
+    // Handle HTTP servers (url-based)
+    if (serverConfig.url) {
+      codexServerConfig.url = serverConfig.url;
+      if (serverConfig.bearer_token_env_var) {
+        codexServerConfig.bearer_token_env_var = serverConfig.bearer_token_env_var;
+      }
+      if (serverConfig.http_headers) {
+        codexServerConfig.http_headers = serverConfig.http_headers;
+      }
+    }
+
+    // Copy optional fields
+    if (serverConfig.startup_timeout_sec !== undefined) {
+      codexServerConfig.startup_timeout_sec = serverConfig.startup_timeout_sec;
+    }
+    if (serverConfig.tool_timeout_sec !== undefined) {
+      codexServerConfig.tool_timeout_sec = serverConfig.tool_timeout_sec;
+    }
+    if (serverConfig.enabled !== undefined) {
+      codexServerConfig.enabled = serverConfig.enabled;
+    }
+    if (serverConfig.enabled_tools) {
+      codexServerConfig.enabled_tools = serverConfig.enabled_tools;
+    }
+    if (serverConfig.disabled_tools) {
+      codexServerConfig.disabled_tools = serverConfig.disabled_tools;
+    }
+
+    // Add the server
+    config.mcp_servers[serverName] = codexServerConfig;
+
+    // Serialize and write back
+    const tomlContent = serializeToml(config);
+    writeFileSync(CODEX_CONFIG_PATH, tomlContent, 'utf8');
+
+    return { success: true };
+  } catch (error: unknown) {
+    console.error('Error adding Codex MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Remove MCP server from Codex config.toml
+ */
+function removeCodexMcpServer(serverName: string): { success?: boolean; error?: string } {
+  try {
+    if (!existsSync(CODEX_CONFIG_PATH)) {
+      return { error: 'Codex config.toml not found' };
+    }
+
+    const content = readFileSync(CODEX_CONFIG_PATH, 'utf8');
+    const config = parseToml(content);
+
+    if (!config.mcp_servers || !config.mcp_servers[serverName]) {
+      return { error: `Server not found: ${serverName}` };
+    }
+
+    // Remove the server
+    delete config.mcp_servers[serverName];
+
+    // Serialize and write back
+    const tomlContent = serializeToml(config);
+    writeFileSync(CODEX_CONFIG_PATH, tomlContent, 'utf8');
+
+    return { success: true };
+  } catch (error: unknown) {
+    console.error('Error removing Codex MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Toggle Codex MCP server enabled state
+ */
+function toggleCodexMcpServer(serverName: string, enabled: boolean): { success?: boolean; error?: string } {
+  try {
+    if (!existsSync(CODEX_CONFIG_PATH)) {
+      return { error: 'Codex config.toml not found' };
+    }
+
+    const content = readFileSync(CODEX_CONFIG_PATH, 'utf8');
+    const config = parseToml(content);
+
+    if (!config.mcp_servers || !config.mcp_servers[serverName]) {
+      return { error: `Server not found: ${serverName}` };
+    }
+
+    // Set enabled state
+    config.mcp_servers[serverName].enabled = enabled;
+
+    // Serialize and write back
+    const tomlContent = serializeToml(config);
+    writeFileSync(CODEX_CONFIG_PATH, tomlContent, 'utf8');
+
+    return { success: true };
+  } catch (error: unknown) {
+    console.error('Error toggling Codex MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+export interface RouteContext {
+  pathname: string;
+  url: URL;
+  req: IncomingMessage;
+  res: ServerResponse;
+  initialPath: string;
+  handlePostRequest: (req: IncomingMessage, res: ServerResponse, handler: (body: unknown) => Promise<any>) => void;
+  broadcastToClients: (data: unknown) => void;
+}
+
+// ========================================
+// Helper Functions
+// ========================================
+
+/**
+ * Get enterprise managed MCP path (platform-specific)
+ */
+function getEnterpriseMcpPath(): string {
+  const platform = process.platform;
+  if (platform === 'darwin') {
+    return '/Library/Application Support/ClaudeCode/managed-mcp.json';
+  } else if (platform === 'win32') {
+    return 'C:\\Program Files\\ClaudeCode\\managed-mcp.json';
+  } else {
+    // Linux and WSL
+    return '/etc/claude-code/managed-mcp.json';
+  }
+}
+
+/**
+ * Safely read and parse JSON file
+ */
+function safeReadJson(filePath) {
+  try {
+    if (!existsSync(filePath)) return null;
+    const content = readFileSync(filePath, 'utf8');
+    return JSON.parse(content);
+  } catch {
+    return null;
+  }
+}
+
+/**
+ * Get MCP servers from a JSON file (expects mcpServers key at top level)
+ * @param {string} filePath
+ * @returns {Object} mcpServers object or empty object
+ */
+function getMcpServersFromFile(filePath) {
+  const config = safeReadJson(filePath);
+  if (!config) return {};
+  return config.mcpServers || {};
+}
+
+/**
+ * Add or update MCP server in project's .mcp.json file
+ * @param {string} projectPath - Project directory path
+ * @param {string} serverName - MCP server name
+ * @param {Object} serverConfig - MCP server configuration
+ * @returns {Object} Result with success/error
+ */
+function addMcpServerToMcpJson(projectPath, serverName, serverConfig) {
+  try {
+    const normalizedPath = normalizePathForFileSystem(projectPath);
+    const mcpJsonPath = join(normalizedPath, '.mcp.json');
+    
+    // Read existing .mcp.json or create new structure
+    let mcpJson = safeReadJson(mcpJsonPath) || { mcpServers: {} };
+    
+    // Ensure mcpServers exists
+    if (!mcpJson.mcpServers) {
+      mcpJson.mcpServers = {};
+    }
+    
+    // Add or update the server
+    mcpJson.mcpServers[serverName] = serverConfig;
+    
+    // Write back to .mcp.json
+    writeFileSync(mcpJsonPath, JSON.stringify(mcpJson, null, 2), 'utf8');
+    
+    return {
+      success: true,
+      serverName,
+      serverConfig,
+      scope: 'project-mcp-json',
+      path: mcpJsonPath
+    };
+  } catch (error: unknown) {
+    console.error('Error adding MCP server to .mcp.json:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Remove MCP server from project's .mcp.json file
+ * @param {string} projectPath - Project directory path
+ * @param {string} serverName - MCP server name
+ * @returns {Object} Result with success/error
+ */
+function removeMcpServerFromMcpJson(projectPath, serverName) {
+  try {
+    const normalizedPath = normalizePathForFileSystem(projectPath);
+    const mcpJsonPath = join(normalizedPath, '.mcp.json');
+    
+    if (!existsSync(mcpJsonPath)) {
+      return { error: '.mcp.json not found' };
+    }
+    
+    const mcpJson = safeReadJson(mcpJsonPath);
+    if (!mcpJson || !mcpJson.mcpServers || !mcpJson.mcpServers[serverName]) {
+      return { error: `Server not found: ${serverName}` };
+    }
+    
+    // Remove the server
+    delete mcpJson.mcpServers[serverName];
+    
+    // Write back to .mcp.json
+    writeFileSync(mcpJsonPath, JSON.stringify(mcpJson, null, 2), 'utf8');
+    
+    return {
+      success: true,
+      serverName,
+      removed: true,
+      scope: 'project-mcp-json'
+    };
+  } catch (error: unknown) {
+    console.error('Error removing MCP server from .mcp.json:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Get MCP configuration from multiple sources (per official Claude Code docs):
+ *
+ * Priority (highest to lowest):
+ * 1. Enterprise managed-mcp.json (cannot be overridden)
+ * 2. Local scope (project-specific private in ~/.claude.json)
+ * 3. Project scope (.mcp.json in project root)
+ * 4. User scope (mcpServers in ~/.claude.json)
+ *
+ * Note: ~/.claude/settings.json is for MCP PERMISSIONS, NOT definitions!
+ *
+ * @returns {Object}
+ */
+function getMcpConfig() {
+  try {
+    const result = {
+      projects: {},
+      userServers: {},        // User-level servers from ~/.claude.json mcpServers
+      enterpriseServers: {},  // Enterprise managed servers (highest priority)
+      configSources: []       // Track where configs came from for debugging
+    };
+
+    // 1. Read Enterprise managed MCP servers (highest priority)
+    const enterprisePath = getEnterpriseMcpPath();
+    if (existsSync(enterprisePath)) {
+      const enterpriseConfig = safeReadJson(enterprisePath);
+      if (enterpriseConfig?.mcpServers) {
+        result.enterpriseServers = enterpriseConfig.mcpServers;
+        result.configSources.push({ type: 'enterprise', path: enterprisePath, count: Object.keys(enterpriseConfig.mcpServers).length });
+      }
+    }
+
+    // 2. Read from ~/.claude.json
+    if (existsSync(CLAUDE_CONFIG_PATH)) {
+      const claudeConfig = safeReadJson(CLAUDE_CONFIG_PATH);
+      if (claudeConfig) {
+        // 2a. User-level mcpServers (top-level mcpServers key)
+        if (claudeConfig.mcpServers) {
+          result.userServers = claudeConfig.mcpServers;
+          result.configSources.push({ type: 'user', path: CLAUDE_CONFIG_PATH, count: Object.keys(claudeConfig.mcpServers).length });
+        }
+
+        // 2b. Project-specific configurations (projects[path].mcpServers)
+        if (claudeConfig.projects) {
+          result.projects = claudeConfig.projects;
+        }
+      }
+    }
+
+    // 3. For each known project, check for .mcp.json (project-level config)
+    // .mcp.json is now the PRIMARY source for project-level MCP servers
+    const projectPaths = Object.keys(result.projects);
+    for (const projectPath of projectPaths) {
+      const mcpJsonPath = join(projectPath, '.mcp.json');
+      if (existsSync(mcpJsonPath)) {
+        const mcpJsonConfig = safeReadJson(mcpJsonPath);
+        if (mcpJsonConfig?.mcpServers) {
+          // Merge .mcp.json servers into project config
+          // .mcp.json has HIGHER priority than ~/.claude.json projects[path].mcpServers
+          const existingServers = result.projects[projectPath]?.mcpServers || {};
+          result.projects[projectPath] = {
+            ...result.projects[projectPath],
+            mcpServers: {
+              ...existingServers,             // ~/.claude.json projects[path] (lower priority, legacy)
+              ...mcpJsonConfig.mcpServers     // .mcp.json (higher priority, new default)
+            },
+            mcpJsonPath: mcpJsonPath,  // Track source for debugging
+            hasMcpJson: true
+          };
+          result.configSources.push({ 
+            type: 'project-mcp-json', 
+            path: mcpJsonPath, 
+            count: Object.keys(mcpJsonConfig.mcpServers).length 
+          });
+        }
+      }
+    }
+
+    // Build globalServers by merging user and enterprise servers
+    // Enterprise servers override user servers
+    result.globalServers = {
+      ...result.userServers,
+      ...result.enterpriseServers
+    };
+
+    return result;
+  } catch (error: unknown) {
+    console.error('Error reading MCP config:', error);
+    return { projects: {}, globalServers: {}, userServers: {}, enterpriseServers: {}, configSources: [], error: (error as Error).message };
+  }
+}
+
+/**
+ * Normalize path to filesystem format (for accessing .mcp.json files)
+ * Always uses forward slashes for cross-platform compatibility
+ * @param {string} path
+ * @returns {string}
+ */
+function normalizePathForFileSystem(path) {
+  let normalized = path.replace(/\\/g, '/');
+  
+  // Handle /d/path format -> D:/path
+  if (normalized.match(/^\/[a-zA-Z]\//)) {
+    normalized = normalized.charAt(1).toUpperCase() + ':' + normalized.slice(2);
+  }
+  
+  return normalized;
+}
+
+/**
+ * Normalize project path to match existing format in .claude.json
+ * Checks both forward slash and backslash formats to find existing entry
+ * @param {string} path
+ * @param {Object} claudeConfig - Optional existing config to check format
+ * @returns {string}
+ */
+function normalizeProjectPathForConfig(path, claudeConfig = null) {
+  // IMPORTANT: Always normalize to forward slashes to prevent duplicate entries
+  // (e.g., prevents both "D:/Claude_dms3" and "D:\\Claude_dms3")
+  let normalizedForward = path.replace(/\\/g, '/');
+
+  // Handle /d/path format -> D:/path
+  if (normalizedForward.match(/^\/[a-zA-Z]\//)) {
+    normalizedForward = normalizedForward.charAt(1).toUpperCase() + ':' + normalizedForward.slice(2);
+  }
+
+  // ALWAYS return forward slash format to prevent duplicates
+  return normalizedForward;
+}
+
+/**
+ * Toggle MCP server enabled/disabled
+ * @param {string} projectPath
+ * @param {string} serverName
+ * @param {boolean} enable
+ * @returns {Object}
+ */
+function toggleMcpServerEnabled(projectPath, serverName, enable) {
+  try {
+    if (!existsSync(CLAUDE_CONFIG_PATH)) {
+      return { error: '.claude.json not found' };
+    }
+
+    const content = readFileSync(CLAUDE_CONFIG_PATH, 'utf8');
+    const config = JSON.parse(content);
+
+    const normalizedPath = normalizeProjectPathForConfig(projectPath, config);
+
+    if (!config.projects || !config.projects[normalizedPath]) {
+      return { error: `Project not found: ${normalizedPath}` };
+    }
+
+    const projectConfig = config.projects[normalizedPath];
+
+    // Ensure disabledMcpServers array exists
+    if (!projectConfig.disabledMcpServers) {
+      projectConfig.disabledMcpServers = [];
+    }
+
+    if (enable) {
+      // Remove from disabled list
+      projectConfig.disabledMcpServers = projectConfig.disabledMcpServers.filter(s => s !== serverName);
+    } else {
+      // Add to disabled list if not already there
+      if (!projectConfig.disabledMcpServers.includes(serverName)) {
+        projectConfig.disabledMcpServers.push(serverName);
+      }
+    }
+
+    // Write back to file
+    writeFileSync(CLAUDE_CONFIG_PATH, JSON.stringify(config, null, 2), 'utf8');
+
+    return {
+      success: true,
+      serverName,
+      enabled: enable,
+      disabledMcpServers: projectConfig.disabledMcpServers
+    };
+  } catch (error: unknown) {
+    console.error('Error toggling MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Add MCP server to project
+ * Now defaults to using .mcp.json instead of .claude.json
+ * @param {string} projectPath
+ * @param {string} serverName
+ * @param {Object} serverConfig
+ * @param {boolean} useLegacyConfig - If true, use .claude.json instead of .mcp.json
+ * @returns {Object}
+ */
+function addMcpServerToProject(projectPath, serverName, serverConfig, useLegacyConfig = false) {
+  try {
+    // Default: Use .mcp.json for project-level MCP servers
+    if (!useLegacyConfig) {
+      return addMcpServerToMcpJson(projectPath, serverName, serverConfig);
+    }
+
+    // Legacy: Use .claude.json (kept for backward compatibility)
+    if (!existsSync(CLAUDE_CONFIG_PATH)) {
+      return { error: '.claude.json not found' };
+    }
+
+    const content = readFileSync(CLAUDE_CONFIG_PATH, 'utf8');
+    const config = JSON.parse(content);
+
+    const normalizedPath = normalizeProjectPathForConfig(projectPath, config);
+
+    // Create project entry if it doesn't exist
+    if (!config.projects) {
+      config.projects = {};
+    }
+
+    if (!config.projects[normalizedPath]) {
+      config.projects[normalizedPath] = {
+        allowedTools: [],
+        mcpContextUris: [],
+        mcpServers: {},
+        enabledMcpjsonServers: [],
+        disabledMcpjsonServers: [],
+        hasTrustDialogAccepted: false,
+        projectOnboardingSeenCount: 0,
+        hasClaudeMdExternalIncludesApproved: false,
+        hasClaudeMdExternalIncludesWarningShown: false
+      };
+    }
+
+    const projectConfig = config.projects[normalizedPath];
+
+    // Ensure mcpServers exists
+    if (!projectConfig.mcpServers) {
+      projectConfig.mcpServers = {};
+    }
+
+    // Add the server
+    projectConfig.mcpServers[serverName] = serverConfig;
+
+    // Write back to file
+    writeFileSync(CLAUDE_CONFIG_PATH, JSON.stringify(config, null, 2), 'utf8');
+
+    return {
+      success: true,
+      serverName,
+      serverConfig,
+      scope: 'project-legacy'
+    };
+  } catch (error: unknown) {
+    console.error('Error adding MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Remove MCP server from project
+ * Checks both .mcp.json and .claude.json
+ * @param {string} projectPath
+ * @param {string} serverName
+ * @returns {Object}
+ */
+function removeMcpServerFromProject(projectPath, serverName) {
+  try {
+    const normalizedPathForFile = normalizePathForFileSystem(projectPath);
+    const mcpJsonPath = join(normalizedPathForFile, '.mcp.json');
+    
+    let removedFromMcpJson = false;
+    let removedFromClaudeJson = false;
+    
+    // Try to remove from .mcp.json first (new default)
+    if (existsSync(mcpJsonPath)) {
+      const mcpJson = safeReadJson(mcpJsonPath);
+      if (mcpJson?.mcpServers?.[serverName]) {
+        const result = removeMcpServerFromMcpJson(projectPath, serverName);
+        if (result.success) {
+          removedFromMcpJson = true;
+        }
+      }
+    }
+
+    // Also try to remove from .claude.json (legacy - may coexist)
+    if (existsSync(CLAUDE_CONFIG_PATH)) {
+      const content = readFileSync(CLAUDE_CONFIG_PATH, 'utf8');
+      const config = JSON.parse(content);
+
+      // Get normalized path that matches existing config format
+      const normalizedPath = normalizeProjectPathForConfig(projectPath, config);
+
+      if (config.projects && config.projects[normalizedPath]) {
+        const projectConfig = config.projects[normalizedPath];
+
+        if (projectConfig.mcpServers && projectConfig.mcpServers[serverName]) {
+          // Remove the server
+          delete projectConfig.mcpServers[serverName];
+
+          // Also remove from disabled list if present
+          if (projectConfig.disabledMcpServers) {
+            projectConfig.disabledMcpServers = projectConfig.disabledMcpServers.filter(s => s !== serverName);
+          }
+
+          // Write back to file
+          writeFileSync(CLAUDE_CONFIG_PATH, JSON.stringify(config, null, 2), 'utf8');
+          removedFromClaudeJson = true;
+        }
+      }
+    }
+
+    // Return success if removed from either location
+    if (removedFromMcpJson || removedFromClaudeJson) {
+      return {
+        success: true,
+        serverName,
+        removed: true,
+        scope: removedFromMcpJson ? 'project-mcp-json' : 'project-legacy',
+        removedFrom: removedFromMcpJson && removedFromClaudeJson ? 'both' : 
+                     removedFromMcpJson ? '.mcp.json' : '.claude.json'
+      };
+    }
+
+    return { error: `Server not found: ${serverName}` };
+  } catch (error: unknown) {
+    console.error('Error removing MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Add MCP server to global/user scope (top-level mcpServers in ~/.claude.json)
+ * @param {string} serverName
+ * @param {Object} serverConfig
+ * @returns {Object}
+ */
+function addGlobalMcpServer(serverName, serverConfig) {
+  try {
+    if (!existsSync(CLAUDE_CONFIG_PATH)) {
+      return { error: '.claude.json not found' };
+    }
+
+    const content = readFileSync(CLAUDE_CONFIG_PATH, 'utf8');
+    const config = JSON.parse(content);
+
+    // Ensure top-level mcpServers exists
+    if (!config.mcpServers) {
+      config.mcpServers = {};
+    }
+
+    // Add the server to top-level mcpServers
+    config.mcpServers[serverName] = serverConfig;
+
+    // Write back to file
+    writeFileSync(CLAUDE_CONFIG_PATH, JSON.stringify(config, null, 2), 'utf8');
+
+    return {
+      success: true,
+      serverName,
+      serverConfig,
+      scope: 'global'
+    };
+  } catch (error: unknown) {
+    console.error('Error adding global MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Remove MCP server from global/user scope (top-level mcpServers)
+ * @param {string} serverName
+ * @returns {Object}
+ */
+function removeGlobalMcpServer(serverName) {
+  try {
+    if (!existsSync(CLAUDE_CONFIG_PATH)) {
+      return { error: '.claude.json not found' };
+    }
+
+    const content = readFileSync(CLAUDE_CONFIG_PATH, 'utf8');
+    const config = JSON.parse(content);
+
+    if (!config.mcpServers || !config.mcpServers[serverName]) {
+      return { error: `Global server not found: ${serverName}` };
+    }
+
+    // Remove the server from top-level mcpServers
+    delete config.mcpServers[serverName];
+
+    // Write back to file
+    writeFileSync(CLAUDE_CONFIG_PATH, JSON.stringify(config, null, 2), 'utf8');
+
+    return {
+      success: true,
+      serverName,
+      removed: true,
+      scope: 'global'
+    };
+  } catch (error: unknown) {
+    console.error('Error removing global MCP server:', error);
+    return { error: (error as Error).message };
+  }
+}
+
+/**
+ * Read settings file safely
+ * @param {string} filePath
+ * @returns {Object}
+ */
+function readSettingsFile(filePath) {
+  try {
+    if (!existsSync(filePath)) {
+      return {};
+    }
+    const content = readFileSync(filePath, 'utf8');
+    return JSON.parse(content);
+  } catch (error: unknown) {
+    console.error(`Error reading settings file ${filePath}:`, error);
+    return {};
+  }
+}
+
+/**
+ * Write settings file safely
+ * @param {string} filePath
+ * @param {Object} settings
+ */
+function writeSettingsFile(filePath, settings) {
+  const dirPath = dirname(filePath);
+  // Ensure directory exists
+  if (!existsSync(dirPath)) {
+    mkdirSync(dirPath, { recursive: true });
+  }
+  writeFileSync(filePath, JSON.stringify(settings, null, 2), 'utf8');
+}
+
+/**
+ * Get project settings path
+ * @param {string} projectPath
+ * @returns {string}
+ */
+function getProjectSettingsPath(projectPath) {
+  const normalizedPath = projectPath.replace(/\//g, '\\').replace(/^\\([a-zA-Z])\\/, '$1:\\');
+  return join(normalizedPath, '.claude', 'settings.json');
+}
+
+// ========================================
+// Route Handlers
+// ========================================
+
+/**
+ * Handle MCP routes
+ * @returns true if route was handled, false otherwise
+ */
+export async function handleMcpRoutes(ctx: RouteContext): Promise<boolean> {
+  const { pathname, url, req, res, initialPath, handlePostRequest, broadcastToClients } = ctx;
+
+  // API: Get MCP configuration (includes both Claude and Codex)
+  if (pathname === '/api/mcp-config') {
+    const mcpData = getMcpConfig();
+    const codexData = getCodexMcpConfig();
+    const combinedData = {
+      ...mcpData,
+      codex: codexData
+    };
+    res.writeHead(200, { 'Content-Type': 'application/json' });
+    res.end(JSON.stringify(combinedData));
+    return true;
+  }
+
+  // ========================================
+  // Codex MCP API Endpoints
+  // ========================================
+
+  // API: Get Codex MCP configuration
+  if (pathname === '/api/codex-mcp-config') {
+    const codexData = getCodexMcpConfig();
+    res.writeHead(200, { 'Content-Type': 'application/json' });
+    res.end(JSON.stringify(codexData));
+    return true;
+  }
+
+  // API: Add Codex MCP server
+  if (pathname === '/api/codex-mcp-add' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { serverName, serverConfig } = body;
+      if (!serverName || !serverConfig) {
+        return { error: 'serverName and serverConfig are required', status: 400 };
+      }
+      return addCodexMcpServer(serverName, serverConfig);
+    });
+    return true;
+  }
+
+  // API: Remove Codex MCP server
+  if (pathname === '/api/codex-mcp-remove' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { serverName } = body;
+      if (!serverName) {
+        return { error: 'serverName is required', status: 400 };
+      }
+      return removeCodexMcpServer(serverName);
+    });
+    return true;
+  }
+
+  // API: Toggle Codex MCP server enabled state
+  if (pathname === '/api/codex-mcp-toggle' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { serverName, enabled } = body;
+      if (!serverName || enabled === undefined) {
+        return { error: 'serverName and enabled are required', status: 400 };
+      }
+      return toggleCodexMcpServer(serverName, enabled);
+    });
+    return true;
+  }
+
+  // API: Toggle MCP server enabled/disabled
+  if (pathname === '/api/mcp-toggle' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { projectPath, serverName, enable } = body;
+      if (!projectPath || !serverName) {
+        return { error: 'projectPath and serverName are required', status: 400 };
+      }
+      return toggleMcpServerEnabled(projectPath, serverName, enable);
+    });
+    return true;
+  }
+
+  // API: Copy MCP server to project
+  if (pathname === '/api/mcp-copy-server' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { projectPath, serverName, serverConfig, configType } = body;
+      if (!projectPath || !serverName || !serverConfig) {
+        return { error: 'projectPath, serverName, and serverConfig are required', status: 400 };
+      }
+      // configType: 'mcp' = use .mcp.json (default), 'claude' = use .claude.json
+      const useLegacyConfig = configType === 'claude';
+      return addMcpServerToProject(projectPath, serverName, serverConfig, useLegacyConfig);
+    });
+    return true;
+  }
+
+  // API: Install CCW MCP server to project
+  if (pathname === '/api/mcp-install-ccw' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { projectPath } = body;
+      if (!projectPath) {
+        return { error: 'projectPath is required', status: 400 };
+      }
+
+      // Generate CCW MCP server config
+      // Use cmd /c to inherit Claude Code's working directory
+      const ccwMcpConfig = {
+        command: "cmd",
+        args: ["/c", "npx", "-y", "ccw-mcp"],
+        env: {
+          CCW_ENABLED_TOOLS: "all"
+        }
+      };
+
+      // Use existing addMcpServerToProject to install CCW MCP
+      return addMcpServerToProject(projectPath, 'ccw-tools', ccwMcpConfig);
+    });
+    return true;
+  }
+
+  // API: Remove MCP server from project
+  if (pathname === '/api/mcp-remove-server' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { projectPath, serverName } = body;
+      if (!projectPath || !serverName) {
+        return { error: 'projectPath and serverName are required', status: 400 };
+      }
+      return removeMcpServerFromProject(projectPath, serverName);
+    });
+    return true;
+  }
+
+  // API: Add MCP server to global scope (top-level mcpServers in ~/.claude.json)
+  if (pathname === '/api/mcp-add-global-server' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { serverName, serverConfig } = body;
+      if (!serverName || !serverConfig) {
+        return { error: 'serverName and serverConfig are required', status: 400 };
+      }
+      return addGlobalMcpServer(serverName, serverConfig);
+    });
+    return true;
+  }
+
+  // API: Remove MCP server from global scope
+  if (pathname === '/api/mcp-remove-global-server' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { serverName } = body;
+      if (!serverName) {
+        return { error: 'serverName is required', status: 400 };
+      }
+      return removeGlobalMcpServer(serverName);
+    });
+    return true;
+  }
+
+  // ========================================
+  // MCP Templates API
+  // ========================================
+
+  // API: Get all MCP templates
+  if (pathname === '/api/mcp-templates' && req.method === 'GET') {
+    const templates = McpTemplatesDb.getAllTemplates();
+    res.writeHead(200, { 'Content-Type': 'application/json' });
+    res.end(JSON.stringify({ success: true, templates }));
+    return true;
+  }
+
+  // API: Save MCP template
+  if (pathname === '/api/mcp-templates' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { name, description, serverConfig, tags, category } = body;
+      if (!name || !serverConfig) {
+        return { error: 'name and serverConfig are required', status: 400 };
+      }
+      return McpTemplatesDb.saveTemplate({
+        name,
+        description,
+        serverConfig,
+        tags,
+        category
+      });
+    });
+    return true;
+  }
+
+  // API: Get template by name
+  if (pathname.startsWith('/api/mcp-templates/') && req.method === 'GET') {
+    const templateName = decodeURIComponent(pathname.split('/api/mcp-templates/')[1]);
+    const template = McpTemplatesDb.getTemplateByName(templateName);
+    if (template) {
+      res.writeHead(200, { 'Content-Type': 'application/json' });
+      res.end(JSON.stringify({ success: true, template }));
+    } else {
+      res.writeHead(404, { 'Content-Type': 'application/json' });
+      res.end(JSON.stringify({ success: false, error: 'Template not found' }));
+    }
+    return true;
+  }
+
+  // API: Delete MCP template
+  if (pathname.startsWith('/api/mcp-templates/') && req.method === 'DELETE') {
+    const templateName = decodeURIComponent(pathname.split('/api/mcp-templates/')[1]);
+    const result = McpTemplatesDb.deleteTemplate(templateName);
+    res.writeHead(result.success ? 200 : 404, { 'Content-Type': 'application/json' });
+    res.end(JSON.stringify(result));
+    return true;
+  }
+
+  // API: Search MCP templates
+  if (pathname === '/api/mcp-templates/search' && req.method === 'GET') {
+    const keyword = url.searchParams.get('q') || '';
+    const templates = McpTemplatesDb.searchTemplates(keyword);
+    res.writeHead(200, { 'Content-Type': 'application/json' });
+    res.end(JSON.stringify({ success: true, templates }));
+    return true;
+  }
+
+  // API: Get all categories
+  if (pathname === '/api/mcp-templates/categories' && req.method === 'GET') {
+    const categories = McpTemplatesDb.getAllCategories();
+    res.writeHead(200, { 'Content-Type': 'application/json' });
+    res.end(JSON.stringify({ success: true, categories }));
+    return true;
+  }
+
+  // API: Get templates by category
+  if (pathname.startsWith('/api/mcp-templates/category/') && req.method === 'GET') {
+    const category = decodeURIComponent(pathname.split('/api/mcp-templates/category/')[1]);
+    const templates = McpTemplatesDb.getTemplatesByCategory(category);
+    res.writeHead(200, { 'Content-Type': 'application/json' });
+    res.end(JSON.stringify({ success: true, templates }));
+    return true;
+  }
+
+  // API: Install template to project or global
+  if (pathname === '/api/mcp-templates/install' && req.method === 'POST') {
+    handlePostRequest(req, res, async (body) => {
+      const { templateName, projectPath, scope } = body;
+      if (!templateName) {
+        return { error: 'templateName is required', status: 400 };
+      }
+
+      const template = McpTemplatesDb.getTemplateByName(templateName);
+      if (!template) {
+        return { error: 'Template not found', status: 404 };
+      }
+
+      // Install to global or project
+      if (scope === 'global') {
+        return addGlobalMcpServer(templateName, template.serverConfig);
+      } else {
+        if (!projectPath) {
+          return { error: 'projectPath is required for project scope', status: 400 };
+        }
+        return addMcpServerToProject(projectPath, templateName, template.serverConfig);
+      }
+    });
+    return true;
+  }
+
+  return false;
+}