claude-code-autoconfig 1.0.200 → 1.0.201

package/bin/cli.js

@@ -1,1014 +1,1042 @@
-#!/usr/bin/env node
-
-const fs = require('fs');
-const path = require('path');
-const readline = require('readline');
-const { execSync, spawn } = require('child_process');
-const { formatUpdateSummary } = require('./update-summary.js');
-
-const cwd = process.cwd();
-const packageDir = path.dirname(__dirname);
-
-// Cleanup any stray 'nul' file immediately on startup (Windows /dev/null artifact)
-function cleanupNulFile() {
-  const nulFile = path.join(cwd, 'nul');
-  if (fs.existsSync(nulFile)) {
-    try {
-      fs.unlinkSync(nulFile);
-    } catch (e) {
-      // Ignore - file might be locked
-    }
-  }
-}
-cleanupNulFile();
-
-// Reserved Windows device names - never create files with these names
-const WINDOWS_RESERVED = ['CON', 'PRN', 'AUX', 'NUL', 'COM1', 'COM2', 'COM3', 'COM4',
-  'COM5', 'COM6', 'COM7', 'COM8', 'COM9', 'LPT1', 'LPT2', 'LPT3', 'LPT4', 'LPT5',
-  'LPT6', 'LPT7', 'LPT8', 'LPT9'];
-
-// Files/folders installed by autoconfig - don't backup these
-const AUTOCONFIG_FILES = ['commands', 'docs', 'agents', 'migration', 'hooks', 'scripts', 'sounds', 'rules', 'feedback', 'settings.json', 'settings.local.json', '.mcp.json', '.autoconfig-version', '.autoconfig-plugins.json'];
-
-function isReservedName(name) {
-  const baseName = name.replace(/\.[^.]*$/, '').toUpperCase();
-  return WINDOWS_RESERVED.includes(baseName);
-}
-
-function hasUserContent(claudeDir) {
-  // Check if .claude/ has any files beyond what autoconfig installs
-  if (!fs.existsSync(claudeDir)) return false;
-
-  const entries = fs.readdirSync(claudeDir);
-  for (const entry of entries) {
-    if (!AUTOCONFIG_FILES.includes(entry)) {
-      // Found something that's not from autoconfig
-      return true;
-    }
-  }
-  return false;
-}
-
-function formatTimestamp() {
-  const now = new Date();
-  const months = ['Jan', 'Feb', 'Mar', 'Apr', 'May', 'Jun',
-                  'Jul', 'Aug', 'Sep', 'Oct', 'Nov', 'Dec'];
-  const month = months[now.getMonth()];
-  const day = now.getDate();
-  const year = now.getFullYear();
-  const hour = now.getHours();
-  const min = String(now.getMinutes()).padStart(2, '0');
-  const ampm = hour >= 12 ? 'pm' : 'am';
-  const hour12 = hour % 12 || 12;
-
-  return `${month}-${day}-${year}_${hour12}-${min}${ampm}`;
-}
-
-// --pull-updates: Copy new update files from package to user's project
-function parseAppliedUpdates(filePath) {
-  if (!fs.existsSync(filePath)) return [];
-  const content = fs.readFileSync(filePath, 'utf8');
-  const match = content.match(/<!-- @applied\r?\n([\s\S]*?)-->/);
-  if (!match) return [];
-
-  return match[1].trim().split('\n')
-    .filter(line => line.trim())
-    .map(line => {
-      const idMatch = line.match(/^(\d{3})/);
-      return idMatch ? parseInt(idMatch[1], 10) : 0;
-    })
-    .filter(id => id > 0);
-}
-
-function getHighestAppliedId(appliedIds) {
-  return appliedIds.length > 0 ? Math.max(...appliedIds) : 0;
-}
-
-function pullUpdates() {
-  console.log('\x1b[36m%s\x1b[0m', '🔄 Checking for updates...');
-  console.log();
-
-  const userCmdPath = path.join(cwd, '.claude', 'commands', 'autoconfig-update.md');
-  const packageCmdPath = path.join(packageDir, '.claude', 'commands', 'autoconfig-update.md');
-  const packageUpdatesDir = path.join(packageDir, '.claude', 'updates');
-  const userUpdatesDir = path.join(cwd, '.claude', 'updates');
-
-  // Ensure .claude/commands/ exists
-  fs.mkdirSync(path.join(cwd, '.claude', 'commands'), { recursive: true });
-
-  // Refresh autoconfig-update.md (preserve user's @applied block)
-  if (fs.existsSync(packageCmdPath)) {
-    if (fs.existsSync(userCmdPath)) {
-      const userContent = fs.readFileSync(userCmdPath, 'utf8');
-      const packageContent = fs.readFileSync(packageCmdPath, 'utf8');
-      const userApplied = userContent.match(/<!-- @applied[\s\S]*?-->/);
-      if (userApplied) {
-        const merged = packageContent.replace(/<!-- @applied[\s\S]*?-->/, userApplied[0]);
-        fs.writeFileSync(userCmdPath, merged);
-      } else {
-        fs.copyFileSync(packageCmdPath, userCmdPath);
-      }
-    } else {
-      fs.copyFileSync(packageCmdPath, userCmdPath);
-    }
-  }
-
-  // Check for available updates in package
-  if (!fs.existsSync(packageUpdatesDir)) {
-    console.log('\x1b[32m%s\x1b[0m', '✅ Already up to date');
-    return;
-  }
-
-  const appliedIds = parseAppliedUpdates(userCmdPath);
-  const highestApplied = getHighestAppliedId(appliedIds);
-
-  const updateFiles = fs.readdirSync(packageUpdatesDir).filter(f => f.endsWith('.md'));
-  const newUpdates = updateFiles.filter(file => {
-    const match = file.match(/^(\d{3})-/);
-    if (!match) return false;
-    return parseInt(match[1], 10) > highestApplied;
-  });
-
-  if (newUpdates.length === 0) {
-    console.log('\x1b[32m%s\x1b[0m', '✅ Already up to date');
-    return;
-  }
-
-  // Copy new update files
-  fs.mkdirSync(userUpdatesDir, { recursive: true });
-  for (const file of newUpdates) {
-    fs.copyFileSync(
-      path.join(packageUpdatesDir, file),
-      path.join(userUpdatesDir, file)
-    );
-  }
-
-  console.log('\x1b[32m%s\x1b[0m', `✅ Copied ${newUpdates.length} new update${newUpdates.length > 1 ? 's' : ''} to .claude/updates/`);
-  console.log();
-  console.log('Run \x1b[36mclaude /autoconfig-update\x1b[0m to review and install updates.');
-}
-
-if (process.argv.includes('--pull-updates')) {
-  pullUpdates();
-  process.exit(0);
-}
-
-// ============================================================================
-// Settings merge helpers (shared by the upgrade path and the plugin installer)
-// ============================================================================
-
-// Additively fold a settings fragment (hooks / env / permissions) into an existing
-// settings object, mutating and returning it.
-//   - hooks: add hook commands that don't already exist (dedup by command string, per event)
-//   - env:   add keys the user hasn't set (never overwrite an existing value)
-//   - permissions.allow/deny: add missing rules (and migrate deprecated :* syntax)
-function mergeSettingsInto(userSettings, fragment) {
-  if (fragment.hooks) {
-    if (!userSettings.hooks) userSettings.hooks = {};
-    for (const [event, matchers] of Object.entries(fragment.hooks)) {
-      if (!userSettings.hooks[event]) {
-        userSettings.hooks[event] = matchers;
-      } else {
-        // Add any hook commands that don't already exist
-        for (const matcher of matchers) {
-          for (const hook of matcher.hooks || []) {
-            const exists = userSettings.hooks[event].some(m =>
-              (m.hooks || []).some(h => h.command === hook.command)
-            );
-            if (!exists) {
-              const existingMatcher = userSettings.hooks[event].find(m => m.matcher === matcher.matcher);
-              if (existingMatcher) {
-                existingMatcher.hooks = existingMatcher.hooks || [];
-                existingMatcher.hooks.push(hook);
-              } else {
-                userSettings.hooks[event].push(matcher);
-              }
-            }
-          }
-        }
-      }
-    }
-  }
-
-  if (fragment.env) {
-    if (!userSettings.env) userSettings.env = {};
-    for (const [key, value] of Object.entries(fragment.env)) {
-      if (!(key in userSettings.env)) userSettings.env[key] = value;
-    }
-  }
-
-  if (fragment.permissions) {
-    if (!userSettings.permissions) userSettings.permissions = {};
-    for (const key of ['allow', 'deny']) {
-      if (!fragment.permissions[key]) continue;
-      if (!userSettings.permissions[key]) {
-        userSettings.permissions[key] = fragment.permissions[key];
-      } else {
-        // Migrate deprecated :* syntax to space-* in existing entries
-        userSettings.permissions[key] = userSettings.permissions[key].map(rule =>
-          rule.replace(/^(Bash\([^)]*):(\*\))$/, '$1 $2')
-        );
-        for (const rule of fragment.permissions[key]) {
-          if (!userSettings.permissions[key].includes(rule)) {
-            userSettings.permissions[key].push(rule);
-          }
-        }
-      }
-    }
-  }
-
-  return userSettings;
-}
-
-// Inverse of mergeSettingsInto: strip a fragment's contributions back out. Only removes
-// what the fragment added (dedup-safe), leaving the user's own entries untouched.
-function unmergeSettingsFrom(userSettings, fragment) {
-  if (fragment.hooks && userSettings.hooks) {
-    for (const [event, matchers] of Object.entries(fragment.hooks)) {
-      if (!userSettings.hooks[event]) continue;
-      const commands = new Set();
-      for (const matcher of matchers) {
-        for (const hook of matcher.hooks || []) {
-          if (hook.command) commands.add(hook.command);
-        }
-      }
-      userSettings.hooks[event] = userSettings.hooks[event]
-        .map(m => {
-          if (m.hooks) m.hooks = m.hooks.filter(h => !commands.has(h.command));
-          return m;
-        })
-        .filter(m => (m.hooks || []).length > 0);
-      if (userSettings.hooks[event].length === 0) delete userSettings.hooks[event];
-    }
-    if (Object.keys(userSettings.hooks).length === 0) delete userSettings.hooks;
-  }
-
-  if (fragment.env && userSettings.env) {
-    for (const [key, value] of Object.entries(fragment.env)) {
-      if (userSettings.env[key] === value) delete userSettings.env[key];
-    }
-    if (Object.keys(userSettings.env).length === 0) delete userSettings.env;
-  }
-
-  if (fragment.permissions && userSettings.permissions) {
-    for (const key of ['allow', 'deny']) {
-      if (!fragment.permissions[key] || !userSettings.permissions[key]) continue;
-      const remove = new Set(fragment.permissions[key]);
-      userSettings.permissions[key] = userSettings.permissions[key].filter(r => !remove.has(r));
-    }
-  }
-
-  return userSettings;
-}
-
-// ============================================================================
-// Plugin system: install / remove / list drop-in add-on plugins.
-//
-// A plugin is a folder containing a plugin.json manifest:
-//   {
-//     "name": "terminal-title",
-//     "version": "1.0.0",
-//     "description": "...",
-//     "files":    [ { "from": "hooks/x.js", "to": "hooks/x.js" } ],  // "to" is relative to <project>/.claude
-//     "settings": { "env": {...}, "hooks": {...}, "permissions": {...} }  // folded into .claude/settings.json
-//   }
-//
-// Installed plugins are tracked in .claude/.autoconfig-plugins.json so `plugin remove`
-// cleanly undoes both the copied files and the settings contributions. The free core
-// ships only this generic loader — paid/closed plugins live and are delivered separately.
-// ============================================================================
-
-const PLUGINS_LEDGER = '.autoconfig-plugins.json';
-
-function readPluginsLedger(claudeDir) {
-  const p = path.join(claudeDir, PLUGINS_LEDGER);
-  if (!fs.existsSync(p)) return {};
-  try { return JSON.parse(fs.readFileSync(p, 'utf8')); } catch { return {}; }
-}
-
-function writePluginsLedger(claudeDir, ledger) {
-  fs.mkdirSync(claudeDir, { recursive: true });
-  fs.writeFileSync(path.join(claudeDir, PLUGINS_LEDGER), JSON.stringify(ledger, null, 2));
-}
-
-function loadManifest(pluginDir) {
-  const manifestPath = path.join(pluginDir, 'plugin.json');
-  if (!fs.existsSync(manifestPath)) throw new Error(`no plugin.json found in ${pluginDir}`);
-  let manifest;
-  try {
-    manifest = JSON.parse(fs.readFileSync(manifestPath, 'utf8'));
-  } catch (e) {
-    throw new Error(`plugin.json is not valid JSON: ${e.message}`);
-  }
-  if (!manifest.name || typeof manifest.name !== 'string') {
-    throw new Error('plugin.json must declare a string "name"');
-  }
-  if (manifest.files && !Array.isArray(manifest.files)) {
-    throw new Error('plugin.json "files" must be an array');
-  }
-  if (!manifest.files) manifest.files = [];
-  return manifest;
-}
-
-function pluginAdd(pluginArg, claudeDir) {
-  const pluginDir = path.resolve(cwd, pluginArg);
-  const manifest = loadManifest(pluginDir);
-  console.log('\x1b[36m%s\x1b[0m', `📦 Installing plugin: ${manifest.name}${manifest.version ? ' v' + manifest.version : ''}`);
-
-  // 1. Copy declared files into <project>/.claude/<to>
-  const installedFiles = [];
-  for (const file of manifest.files) {
-    if (!file || !file.from || !file.to) throw new Error('each "files" entry must have "from" and "to"');
-    const src = path.resolve(pluginDir, file.from);
-    if (!fs.existsSync(src)) throw new Error(`plugin file not found: ${file.from}`);
-    const dest = path.join(claudeDir, file.to);
-    if (isReservedName(path.basename(dest))) throw new Error(`refusing to write reserved filename: ${file.to}`);
-    fs.mkdirSync(path.dirname(dest), { recursive: true });
-    fs.copyFileSync(src, dest);
-    installedFiles.push(file.to);
-    console.log('\x1b[90m%s\x1b[0m', `   + .claude/${file.to}`);
-  }
-
-  // 2. Fold the settings fragment into .claude/settings.json (clone first to avoid aliasing the ledger copy)
-  if (manifest.settings) {
-    const settingsPath = path.join(claudeDir, 'settings.json');
-    let userSettings = {};
-    if (fs.existsSync(settingsPath)) {
-      try { userSettings = JSON.parse(fs.readFileSync(settingsPath, 'utf8')); } catch { userSettings = {}; }
-    }
-    mergeSettingsInto(userSettings, JSON.parse(JSON.stringify(manifest.settings)));
-    fs.mkdirSync(claudeDir, { recursive: true });
-    fs.writeFileSync(settingsPath, JSON.stringify(userSettings, null, 2));
-    console.log('\x1b[90m%s\x1b[0m', '   ✎ merged settings.json (hooks / env / permissions)');
-  }
-
-  // 3. Record in the ledger so removal can cleanly undo everything
-  const ledger = readPluginsLedger(claudeDir);
-  ledger[manifest.name] = {
-    version: manifest.version || null,
-    files: installedFiles,
-    settings: manifest.settings || null,
-    installedAt: new Date().toISOString()
-  };
-  writePluginsLedger(claudeDir, ledger);
-  console.log('\x1b[32m%s\x1b[0m', `✅ Installed ${manifest.name}`);
-}
-
-function pluginRemove(name, claudeDir) {
-  const ledger = readPluginsLedger(claudeDir);
-  const entry = ledger[name];
-  if (!entry) throw new Error(`plugin "${name}" is not installed`);
-  console.log('\x1b[36m%s\x1b[0m', `🗑  Removing plugin: ${name}`);
-
-  // 1. Delete the files the plugin installed
-  for (const rel of entry.files || []) {
-    const p = path.join(claudeDir, rel);
-    if (fs.existsSync(p)) {
-      fs.rmSync(p, { force: true });
-      console.log('\x1b[90m%s\x1b[0m', `   - .claude/${rel}`);
-    }
-  }
-
-  // 2. Revert the settings contributions
-  if (entry.settings) {
-    const settingsPath = path.join(claudeDir, 'settings.json');
-    if (fs.existsSync(settingsPath)) {
-      try {
-        const userSettings = JSON.parse(fs.readFileSync(settingsPath, 'utf8'));
-        unmergeSettingsFrom(userSettings, entry.settings);
-        fs.writeFileSync(settingsPath, JSON.stringify(userSettings, null, 2));
-        console.log('\x1b[90m%s\x1b[0m', '   ✎ reverted settings.json contributions');
-      } catch { /* leave settings intact if unparsable */ }
-    }
-  }
-
-  // 3. Drop it from the ledger
-  delete ledger[name];
-  writePluginsLedger(claudeDir, ledger);
-  console.log('\x1b[32m%s\x1b[0m', `✅ Removed ${name}`);
-}
-
-function pluginList(claudeDir) {
-  const ledger = readPluginsLedger(claudeDir);
-  const names = Object.keys(ledger);
-  if (names.length === 0) {
-    console.log('\x1b[90m%s\x1b[0m', 'No plugins installed.');
-    return;
-  }
-  console.log('\x1b[36m%s\x1b[0m', 'Installed plugins:');
-  for (const name of names) {
-    const e = ledger[name];
-    const n = (e.files || []).length;
-    console.log(`   • ${name}${e.version ? ' v' + e.version : ''}  (${n} file${n === 1 ? '' : 's'})`);
-  }
-}
-
-function runPluginCommand(argv) {
-  const sub = argv[3];
-  const arg = argv[4];
-  const claudeDir = path.join(cwd, '.claude');
-  try {
-    if (sub === 'add' || sub === 'install') {
-      if (!arg) throw new Error('usage: claude-code-autoconfig plugin add <path-to-plugin-dir>');
-      pluginAdd(arg, claudeDir);
-    } else if (sub === 'remove' || sub === 'rm' || sub === 'uninstall') {
-      if (!arg) throw new Error('usage: claude-code-autoconfig plugin remove <name>');
-      pluginRemove(arg, claudeDir);
-    } else if (sub === 'list' || sub === 'ls') {
-      pluginList(claudeDir);
-    } else {
-      console.log('Usage:');
-      console.log('  claude-code-autoconfig plugin add <dir>      Install a plugin from a folder');
-      console.log('  claude-code-autoconfig plugin remove <name>  Uninstall a plugin');
-      console.log('  claude-code-autoconfig plugin list           List installed plugins');
-      process.exit(sub ? 1 : 0);
-    }
-  } catch (err) {
-    console.log('\x1b[31m%s\x1b[0m', `❌ ${err.message}`);
-    process.exit(1);
-  }
-}
-
-if (process.argv[2] === 'plugin') {
-  runPluginCommand(process.argv);
-  process.exit(0);
-}
-
-const forceMode = process.argv.includes('--force');
-
-// Detect if running inside Claude Code session.
-// CLAUDECODE=1 alone is not reliable: env vars inherit into every descendant
-// process (e.g. VS Code launched from a Claude session, and any terminal it
-// spawns). A genuine in-agent run has piped stdio (isTTY falsy), while a human
-// terminal has a real TTY — so require both signals before blocking.
-const insideClaude = process.env.CLAUDECODE === '1' && !process.stdout.isTTY;
-
-console.log('\x1b[36m%s\x1b[0m', '🚀 Claude Code Autoconfig');
-console.log();
-
-// Block early if running inside Claude Code (unless --bootstrap)
-if (insideClaude && !process.argv.includes('--bootstrap')) {
-  console.log('\x1b[31m%s\x1b[0m', '● The tool needs to be run from a regular terminal, not from within Claude Code.');
-  console.log();
-  console.log('   Open a separate terminal window and run:');
-  console.log();
-  console.log('   \x1b[36mnpx claude-code-autoconfig@latest\x1b[0m');
-  console.log();
-  process.exit(0);
-}
-
-// Step 1: Check if Claude Code is installed
-function isClaudeInstalled() {
-  try {
-    execSync('claude --version', { stdio: 'ignore' });
-    return true;
-  } catch {
-    return false;
-  }
-}
-
-function installClaude() {
-  console.log('\x1b[33m%s\x1b[0m', '⚠️  Claude Code not found. Installing...');
-  console.log();
-  try {
-    execSync('npm install -g @anthropic-ai/claude-code', { stdio: 'inherit' });
-    console.log();
-    console.log('\x1b[32m%s\x1b[0m', '✅ Claude Code installed');
-    return true;
-  } catch (err) {
-    console.log('\x1b[31m%s\x1b[0m', '❌ Failed to install Claude Code');
-    console.log('   Install manually: npm install -g @anthropic-ai/claude-code');
-    return false;
-  }
-}
-
-if (!isClaudeInstalled()) {
-  if (!installClaude()) {
-    process.exit(1);
-  }
-}
-
-console.log('\x1b[32m%s\x1b[0m', '✅ Claude Code detected');
-
-// Step 2: Backup existing .claude/ if it has user content
-const claudeDest = path.join(cwd, '.claude');
-const SKIP_BACKUP = ['migration']; // Don't backup the migration folder itself
-let migrationPath = null;
-
-// Diagnostic: log pre-install state
-console.log();
-console.log('\x1b[90m%s\x1b[0m', '── Pre-install state ──');
-console.log('\x1b[90m%s\x1b[0m', `   Working dir: ${cwd}`);
-const claudeMdExists = fs.existsSync(path.join(cwd, 'CLAUDE.md'));
-console.log('\x1b[90m%s\x1b[0m', `   CLAUDE.md: ${claudeMdExists ? 'exists' : 'not found'}`);
-if (claudeMdExists) {
-  const claudeMdContent = fs.readFileSync(path.join(cwd, 'CLAUDE.md'), 'utf8');
-  const hasMarker = claudeMdContent.includes('AUTO-GENERATED BY /autoconfig');
-  console.log('\x1b[90m%s\x1b[0m', `   CLAUDE.md autoconfig marker: ${hasMarker ? 'yes' : 'no'}`);
-}
-if (fs.existsSync(claudeDest)) {
-  const entries = fs.readdirSync(claudeDest);
-  console.log('\x1b[90m%s\x1b[0m', `   .claude/ exists: yes (${entries.length} entries)`);
-  for (const e of entries) {
-    const isAutoconfig = AUTOCONFIG_FILES.includes(e);
-    console.log('\x1b[90m%s\x1b[0m', `     ${isAutoconfig ? '·' : '▸'} ${e}${isAutoconfig ? '' : ' (user content)'}`);
-  }
-  const docsHtml = path.join(claudeDest, 'docs', 'autoconfig.docs.html');
-  console.log('\x1b[90m%s\x1b[0m', `   autoconfig.docs.html: ${fs.existsSync(docsHtml) ? 'exists' : 'not found'}`);
-} else {
-  console.log('\x1b[90m%s\x1b[0m', '   .claude/ exists: no');
-}
-console.log('\x1b[90m%s\x1b[0m', '───────────────────────');
-console.log();
-
-function copyDirForBackup(src, dest) {
-  fs.mkdirSync(dest, { recursive: true });
-  const entries = fs.readdirSync(src, { withFileTypes: true });
-
-  for (const entry of entries) {
-    if (SKIP_BACKUP.includes(entry.name)) continue;
-    if (AUTOCONFIG_FILES.includes(entry.name)) continue; // Skip autoconfig-installed files
-    if (isReservedName(entry.name)) continue;
-
-    const srcPath = path.join(src, entry.name);
-    const destPath = path.join(dest, entry.name);
-
-    if (entry.isDirectory()) {
-      copyDirForBackup(srcPath, destPath);
-    } else {
-      fs.copyFileSync(srcPath, destPath);
-    }
-  }
-}
-
-function collectFiles(dir, prefix = '') {
-  const files = [];
-  const entries = fs.readdirSync(dir, { withFileTypes: true });
-  for (const entry of entries) {
-    const relPath = prefix ? `${prefix}/${entry.name}` : entry.name;
-    if (entry.isDirectory()) {
-      files.push(...collectFiles(path.join(dir, entry.name), relPath));
-    } else {
-      files.push(relPath);
-    }
-  }
-  return files;
-}
-
-if (fs.existsSync(claudeDest) && hasUserContent(claudeDest)) {
-  const userEntries = fs.readdirSync(claudeDest).filter(e =>
-    e !== 'migration' && !AUTOCONFIG_FILES.includes(e)
-  );
-  console.log('\x1b[90m%s\x1b[0m', `   Backup triggered by user content: ${userEntries.join(', ')}`);
-
-  const timestamp = formatTimestamp();
-  const migrationDir = path.join(claudeDest, 'migration');
-  migrationPath = path.join(migrationDir, timestamp);
-
-  fs.mkdirSync(migrationPath, { recursive: true });
-
-  // Copy user files to backup (excluding autoconfig-installed files)
-  for (const entry of userEntries) {
-    const srcPath = path.join(claudeDest, entry);
-    const destPath = path.join(migrationPath, entry);
-
-    if (fs.statSync(srcPath).isDirectory()) {
-      copyDirForBackup(srcPath, destPath);
-    } else {
-      fs.copyFileSync(srcPath, destPath);
-    }
-  }
-
-  // Collect backed up files for metadata
-  const backedUpFiles = collectFiles(migrationPath);
-
-  if (backedUpFiles.length > 0) {
-    // Write latest.json for the guide
-    fs.writeFileSync(path.join(migrationDir, 'latest.json'), JSON.stringify({
-      timestamp: timestamp,
-      backedUpFiles: backedUpFiles
-    }, null, 2));
-
-    // Create README inside the dated backup folder
-    const backupReadme = `# Migration Backup: ${timestamp}
-
-This folder contains a backup of your previous .claude/ configuration.
-
-## Why This Backup Exists
-
-You ran \`npx claude-code-autoconfig\` on a project that already had Claude Code configured.
-Your previous files were backed up here before the new configuration was applied.
-
-## Backed Up Files
-
-${backedUpFiles.map(f => `- ${f}`).join('\n')}
-
-## Restoring Files
-
-To restore any file, copy it from this folder back to \`.claude/\`.
-
-For example:
-\`\`\`bash
-cp .claude/migration/${timestamp}/settings.json .claude/settings.json
-\`\`\`
-`;
-    fs.writeFileSync(path.join(migrationPath, 'README.md'), backupReadme);
-
-    console.log('\x1b[33m%s\x1b[0m', `⚠️  Backed up existing config to .claude/migration/${timestamp}/`);
-  } else {
-    // No user files to backup, remove the empty migration folder
-    fs.rmdirSync(migrationPath, { recursive: true });
-  }
-}
-
-// Read previous installed version (before copying overwrites it)
-const versionFile = path.join(claudeDest, '.autoconfig-version');
-const previousVersion = fs.existsSync(versionFile)
-  ? fs.readFileSync(versionFile, 'utf8').trim()
-  : null;
-const currentVersion = require(path.join(packageDir, 'package.json')).version;
-
-// Detect upgrade vs fresh install (must run BEFORE copying files)
-const isUpgrade = (() => {
-  // Indicator 1: CLAUDE.md has autoconfig marker
-  const claudeMdPath = path.join(cwd, 'CLAUDE.md');
-  if (fs.existsSync(claudeMdPath)) {
-    const content = fs.readFileSync(claudeMdPath, 'utf8');
-    if (content.includes('AUTO-GENERATED BY /autoconfig')) {
-      console.log('\x1b[90m%s\x1b[0m', '   Upgrade detected: CLAUDE.md has autoconfig marker');
-      return true;
-    }
-  }
-  // Indicator 2: docs HTML exists (unique autoconfig artifact)
-  const docsPath = path.join(claudeDest, 'docs', 'autoconfig.docs.html');
-  if (fs.existsSync(docsPath)) {
-    console.log('\x1b[90m%s\x1b[0m', '   Upgrade detected: autoconfig.docs.html exists');
-    return true;
-  }
-  console.log('\x1b[90m%s\x1b[0m', '   Install type: fresh (no previous autoconfig found)');
-  return false;
-})();
-
-// Step 3: Copy minimal bootstrap (commands/, docs/, agents/, feedback/, hooks/)
-const commandsSrc = path.join(packageDir, '.claude', 'commands');
-const docsSrc = path.join(packageDir, '.claude', 'docs');
-const agentsSrc = path.join(packageDir, '.claude', 'agents');
-const feedbackSrc = path.join(packageDir, '.claude', 'feedback');
-const hooksSrc = path.join(packageDir, '.claude', 'hooks');
-const scriptsSrc = path.join(packageDir, '.claude', 'scripts');
-
-// Files that exist in the dev repo but should never be installed to user projects
-const DEV_ONLY_FILES = ['deploy-to-npmjs.md'];
-
-function copyDir(src, dest) {
-  fs.mkdirSync(dest, { recursive: true });
-  const entries = fs.readdirSync(src, { withFileTypes: true });
-
-  for (const entry of entries) {
-    if (isReservedName(entry.name)) continue;
-    if (DEV_ONLY_FILES.includes(entry.name)) continue;
-
-    const srcPath = path.join(src, entry.name);
-    const destPath = path.join(dest, entry.name);
-
-    if (entry.isDirectory()) {
-      copyDir(srcPath, destPath);
-    } else {
-      fs.copyFileSync(srcPath, destPath);
-    }
-  }
-}
-
-function copyDirIfMissing(src, dest) {
-  fs.mkdirSync(dest, { recursive: true });
-  const entries = fs.readdirSync(src, { withFileTypes: true });
-  for (const entry of entries) {
-    if (isReservedName(entry.name)) continue;
-    if (DEV_ONLY_FILES.includes(entry.name)) continue;
-    const srcPath = path.join(src, entry.name);
-    const destPath = path.join(dest, entry.name);
-    if (entry.isDirectory()) {
-      copyDirIfMissing(srcPath, destPath);
-    } else if (!fs.existsSync(destPath)) {
-      fs.copyFileSync(srcPath, destPath);
-    }
-  }
-}
-
-// Parse @version from command file content
-function parseCommandVersion(content) {
-  const match = content.match(/<!-- @version (\d+) -->/);
-  return match ? parseInt(match[1], 10) : 0;
-}
-
-// Track what commands are new/updated for summary
-const commandsDest = path.join(claudeDest, 'commands');
-const existingCommandContents = new Map();
-if (fs.existsSync(commandsDest)) {
-  for (const f of fs.readdirSync(commandsDest).filter(f => f.endsWith('.md'))) {
-    existingCommandContents.set(f, fs.readFileSync(path.join(commandsDest, f), 'utf8'));
-  }
-}
-
-// Copy commands (required for /autoconfig to work)
-// Preserve user's saved @screenshotDir in gls.md across upgrades
-const glsDest = path.join(claudeDest, 'commands', 'gls.md');
-let savedScreenshotDir = null;
-if (fs.existsSync(glsDest)) {
-  const firstLine = fs.readFileSync(glsDest, 'utf8').split(/\r?\n/)[0];
-  const match = firstLine.match(/<!-- @screenshotDir (.+?) -->/);
-  if (match) savedScreenshotDir = match[1].trim();
-}
-
-if (fs.existsSync(commandsSrc)) {
-  copyDir(commandsSrc, path.join(claudeDest, 'commands'));
-} else {
-  console.log('\x1b[31m%s\x1b[0m', '❌ Error: commands directory not found');
-  process.exit(1);
-}
-
-// Detect new and updated commands (with version tracking)
-const newCommands = [];
-const updatedCommands = []; // { file, oldVersion, newVersion }
-for (const f of fs.readdirSync(commandsDest).filter(f => f.endsWith('.md') && !DEV_ONLY_FILES.includes(f))) {
-  const newContent = fs.readFileSync(path.join(commandsDest, f), 'utf8');
-  if (!existingCommandContents.has(f)) {
-    newCommands.push({ file: f, version: parseCommandVersion(newContent) });
-  } else if (newContent !== existingCommandContents.get(f)) {
-    const oldVersion = parseCommandVersion(existingCommandContents.get(f));
-    const newVersion = parseCommandVersion(newContent);
-    updatedCommands.push({ file: f, oldVersion, newVersion });
-  }
-}
-
-// Restore saved screenshot dir after commands overwrite
-if (savedScreenshotDir && fs.existsSync(glsDest)) {
-  const content = fs.readFileSync(glsDest, 'utf8');
-  fs.writeFileSync(glsDest, content.replace(
-    /<!-- @screenshotDir\s*-->/,
-    `<!-- @screenshotDir ${savedScreenshotDir} -->`
-  ));
-}
-
-// Copy docs (only .html files — skip internal planning docs)
-if (fs.existsSync(docsSrc)) {
-  const docsDestDir = path.join(claudeDest, 'docs');
-  fs.mkdirSync(docsDestDir, { recursive: true });
-  for (const file of fs.readdirSync(docsSrc)) {
-    if (file.endsWith('.html')) {
-      fs.copyFileSync(path.join(docsSrc, file), path.join(docsDestDir, file));
-    }
-  }
-}
-
-// Copy agents if exists
-if (fs.existsSync(agentsSrc)) {
-  copyDir(agentsSrc, path.join(claudeDest, 'agents'));
-}
-
-// Copy feedback template (preserve user customizations unless --force)
-if (fs.existsSync(feedbackSrc)) {
-  const copyFn = forceMode ? copyDir : copyDirIfMissing;
-  copyFn(feedbackSrc, path.join(claudeDest, 'feedback'));
-}
-
-// Copy hooks directory. Genuinely user-authorable hooks are preserved on upgrade
-// (copyDirIfMissing), BUT the cca-managed title-hook files are ALWAYS refreshed so bug-fixes
-// reach existing installs — without this, copyDirIfMissing leaves stale hooks in place forever
-// (same always-overwrite rationale as scripts/ below). --force already overwrites everything.
-const MANAGED_HOOKS = ['terminal-title.js', 'terminal-title.directive.md', 'arcade-beeps.js'];
-if (fs.existsSync(hooksSrc)) {
-  const copyFn = forceMode ? copyDir : copyDirIfMissing;
-  copyFn(hooksSrc, path.join(claudeDest, 'hooks'));
-  if (!forceMode) {
-    const hooksDestDir = path.join(claudeDest, 'hooks');
-    for (const name of MANAGED_HOOKS) {
-      const src = path.join(hooksSrc, name);
-      if (fs.existsSync(src)) fs.copyFileSync(src, path.join(hooksDestDir, name));
-    }
-  }
-}
-
-// Copy scripts directory (always overwrite — these are utility scripts, not user-customizable)
-if (fs.existsSync(scriptsSrc)) {
-  copyDir(scriptsSrc, path.join(claudeDest, 'scripts'));
-}
-
-// Copy sounds directory (binary status-cue assets for arcade-beeps; always overwrite)
-const soundsSrc = path.join(packageDir, '.claude', 'sounds');
-if (fs.existsSync(soundsSrc)) {
-  copyDir(soundsSrc, path.join(claudeDest, 'sounds'));
-}
-
-// Note: updates directory is no longer copied to user projects.
-// Update files are only used by --pull-updates (for /autoconfig-update).
-// On fresh install, all updates are pre-marked as applied and the content
-// is already baked into /autoconfig itself, so the files are unnecessary.
-
-// Copy settings.json — fresh install gets full copy, upgrades get hooks + permissions merged
-const settingsSrc = path.join(packageDir, '.claude', 'settings.json');
-const settingsDest = path.join(claudeDest, 'settings.json');
-if (fs.existsSync(settingsSrc)) {
-  if (forceMode || !fs.existsSync(settingsDest)) {
-    fs.copyFileSync(settingsSrc, settingsDest);
-  } else {
-    // Merge hooks and permissions from package into existing settings
-    try {
-      const pkgSettings = JSON.parse(fs.readFileSync(settingsSrc, 'utf8'));
-      const userSettings = JSON.parse(fs.readFileSync(settingsDest, 'utf8'));
-
-      // Additively fold package hooks/env/permissions into the user's settings
-      // (shared with the plugin installer — see mergeSettingsInto).
-      mergeSettingsInto(userSettings, pkgSettings);
-
-      fs.writeFileSync(settingsDest, JSON.stringify(userSettings, null, 2));
-    } catch (err) {
-      // If merge fails, don't break the install
-    }
-  }
-}
-
-console.log('\x1b[32m%s\x1b[0m', '✅ Prepared /autoconfig command');
-
-// Show what was installed/updated
-if (isUpgrade && (newCommands.length > 0 || updatedCommands.length > 0)) {
-  console.log();
-  for (const { file, version } of newCommands) {
-    const name = file.replace('.md', '');
-    const ver = version > 0 ? ` v${version}` : '';
-    console.log('\x1b[36m%s\x1b[0m', `   + /${name}${ver} (new)`);
-  }
-  for (const { file, oldVersion, newVersion } of updatedCommands) {
-    if (oldVersion > 0 && newVersion > 0 && oldVersion === newVersion) continue;
-    const name = file.replace('.md', '');
-    const ver = (oldVersion > 0 && newVersion > 0) ? ` (v${oldVersion} → v${newVersion})` : ' (updated)';
-    console.log('\x1b[33m%s\x1b[0m', `   ↑ /${name}${ver}`);
-  }
-}
-
-
-// Pre-mark all bundled updates as applied when the @applied block is empty.
-// On fresh installs, /autoconfig handles their content (e.g., debug methodology in MEMORY.md).
-// On upgrades from pre-update-system versions, these updates are already baked in.
-// The regex only matches an empty @applied block, so this is safe to run unconditionally.
-{
-  const userCmdPath = path.join(claudeDest, 'commands', 'autoconfig-update.md');
-  const packageUpdatesDir = path.join(packageDir, '.claude', 'updates');
-  if (fs.existsSync(userCmdPath) && fs.existsSync(packageUpdatesDir)) {
-    const updateFiles = fs.readdirSync(packageUpdatesDir)
-      .filter(f => f.endsWith('.md') && /^\d{3}-/.test(f))
-      .sort();
-    if (updateFiles.length > 0) {
-      const appliedLines = updateFiles.map(file => {
-        const id = file.match(/^(\d{3})-/)[1];
-        const content = fs.readFileSync(path.join(packageUpdatesDir, file), 'utf8');
-        const titleMatch = content.match(/<!-- @title (.+?) -->/);
-        const title = titleMatch ? titleMatch[1] : file.replace(/^\d{3}-/, '').replace(/\.md$/, '');
-        return `${id} - ${title}`;
-      });
-      const cmdContent = fs.readFileSync(userCmdPath, 'utf8');
-      const updated = cmdContent.replace(
-        /<!-- @applied\r?\n-->/,
-        `<!-- @applied\n${appliedLines.join('\n')}\n-->`
-      );
-      fs.writeFileSync(userCmdPath, updated);
-    }
-  }
-}
-
-// Clean up updates directory — updates are tracked in the @applied block,
-// so the .md files don't need to stay in the user's project
-const userUpdatesDir = path.join(claudeDest, 'updates');
-if (fs.existsSync(userUpdatesDir)) {
-  fs.rmSync(userUpdatesDir, { recursive: true });
-}
-
-// Migrate FEEDBACK.md content to CLAUDE.md Discoveries section (one-time, on upgrade)
-if (isUpgrade) {
-  const claudeMdPath = path.join(cwd, 'CLAUDE.md');
-  const feedbackPath = path.join(claudeDest, 'feedback', 'FEEDBACK.md');
-
-  if (fs.existsSync(claudeMdPath) && fs.existsSync(feedbackPath)) {
-    const feedbackContent = fs.readFileSync(feedbackPath, 'utf8');
-
-    // Extract custom content (everything after the first --- separator following the header)
-    const feedbackLines = feedbackContent.split(/\r?\n/);
-    let firstSeparatorIdx = -1;
-    for (let i = 0; i < feedbackLines.length; i++) {
-      if (feedbackLines[i].trim() === '---') {
-        firstSeparatorIdx = i;
-        break;
-      }
-    }
-
-    if (firstSeparatorIdx >= 0) {
-      const customContent = feedbackLines.slice(firstSeparatorIdx + 1).join('\n').trim();
-
-      // Only migrate if there's custom content and it hasn't already been migrated
-      const claudeMdContent = fs.readFileSync(claudeMdPath, 'utf8');
-      const hasDiscoveries = claudeMdContent.includes('## Discoveries');
-
-      if (customContent.length > 0 && !hasDiscoveries) {
-        // Add Discoveries section to CLAUDE.md
-        const discoveriesSection = `\n\n## Discoveries\n<!-- Claude: append project-specific learnings, gotchas, and context below. This section persists across /autoconfig runs. -->\n\n${customContent}\n`;
-        fs.writeFileSync(claudeMdPath, claudeMdContent + discoveriesSection);
-
-        // Reset FEEDBACK.md to clean template
-        const cleanTemplate = `<!-- @description Human-authored corrections and guidance for Claude. Reserved for team feedback only — Claude must not write here. This directory persists across /autoconfig runs. -->\n\n# Team Feedback\n\n**This file is for human-authored corrections and guidance only.**\nClaude reads this file but must never write to it. When Claude discovers project context, gotchas, or learnings, it should append to the \`## Discoveries\` section in CLAUDE.md instead.\n\n---\n\n`;
-        fs.writeFileSync(feedbackPath, cleanTemplate);
-
-        // Count migrated sections
-        const sectionCount = (customContent.match(/^## /gm) || []).length || 1;
-        console.log('\x1b[36m%s\x1b[0m', `   📋 Migrated ${sectionCount} section${sectionCount > 1 ? 's' : ''} from FEEDBACK.md → CLAUDE.md Discoveries`);
-      }
-    }
-  }
-}
-
-// Write current version marker
-fs.writeFileSync(versionFile, currentVersion);
-
-const launchCommand = isUpgrade ? '/autoconfig-update' : '/autoconfig';
-
-// --bootstrap: copy files only, exit silently (used by /autoconfig inside Claude)
-const bootstrapMode = process.argv.includes('--bootstrap');
-if (bootstrapMode) {
-  process.exit(0);
-}
-
-// Step 4: Show "READY" message
-console.log();
-if (isUpgrade) {
-  console.log('\x1b[33m╔════════════════════════════════════════════╗\x1b[0m');
-  console.log('\x1b[33m║                                            ║\x1b[0m');
-  console.log('\x1b[33m║\x1b[0m           \x1b[33;1mREADY TO UPDATE\x1b[0m                  \x1b[33m║\x1b[0m');
-  console.log('\x1b[33m║                                            ║\x1b[0m');
-  console.log('\x1b[33m║\x1b[0m   \x1b[36mPress ENTER to launch Claude and\x1b[0m         \x1b[33m║\x1b[0m');
-  console.log('\x1b[33m║\x1b[0m   \x1b[36mauto-run /autoconfig-update\x1b[0m              \x1b[33m║\x1b[0m');
-  console.log('\x1b[33m║                                            ║\x1b[0m');
-  console.log('\x1b[33m╚════════════════════════════════════════════╝\x1b[0m');
-} else {
-  console.log('\x1b[33m╔════════════════════════════════════════════╗\x1b[0m');
-  console.log('\x1b[33m║                                            ║\x1b[0m');
-  console.log('\x1b[33m║\x1b[0m           \x1b[33;1mREADY TO CONFIGURE\x1b[0m               \x1b[33m║\x1b[0m');
-  console.log('\x1b[33m║                                            ║\x1b[0m');
-  console.log('\x1b[33m║\x1b[0m   \x1b[36mPress ENTER to launch Claude and\x1b[0m         \x1b[33m║\x1b[0m');
-  console.log('\x1b[33m║\x1b[0m   \x1b[36mauto-run /autoconfig\x1b[0m                     \x1b[33m║\x1b[0m');
-  console.log('\x1b[33m║                                            ║\x1b[0m');
-  console.log('\x1b[33m╚════════════════════════════════════════════╝\x1b[0m');
-}
-// Show what changed on the upgrade path so a re-run never looks like "nothing came down":
-// grouped features/fixes since the installed version, or a single confirmation line when
-// already on the latest. Rendered here so it lands right before the ENTER prompt.
-// Logic lives in update-summary.js (pure + unit-tested).
-if (isUpgrade) {
-  const changelogPath = path.join(packageDir, 'CHANGELOG.md');
-  const changelogText = fs.existsSync(changelogPath) ? fs.readFileSync(changelogPath, 'utf8') : '';
-  console.log();
-  for (const seg of formatUpdateSummary(previousVersion, currentVersion, changelogText)) {
-    if (seg.kind === 'latest')       console.log(`\x1b[32m  ✓ ${seg.text}\x1b[0m`);
-    else if (seg.kind === 'heading') console.log(`\x1b[36m  ${seg.text}\x1b[0m`);
-    else if (seg.kind === 'group')   console.log(`\x1b[33m    ${seg.text}:\x1b[0m`);
-    else if (seg.kind === 'item')    console.log(`\x1b[90m      • ${seg.text}\x1b[0m`);
-    else if (seg.kind === 'more')    console.log(`\x1b[90m    ${seg.text}\x1b[0m`);
-  }
-  console.log();
-}
-if (!isUpgrade) {
-  console.log('\x1b[90m%s\x1b[0m', "You'll need to approve a few file prompts to complete the installation.");
-  console.log();
-}
-
-// Step 5: Wait for Enter, then launch Claude Code
-const rl = readline.createInterface({
-  input: process.stdin,
-  output: process.stdout
-});
-
-rl.question('\x1b[90mPress ENTER to continue...\x1b[0m', () => {
-  rl.close();
-
-  console.log();
-  console.log('\x1b[36m%s\x1b[0m', `🚀 Launching Claude Code with ${launchCommand}...`);
-  console.log();
-  console.log('\x1b[90m%s\x1b[0m', '   Heads up: Claude Code can take 30+ seconds to initialize.');
-  console.log('\x1b[90m%s\x1b[0m', '   Please be patient while it loads.');
-  console.log();
-
-  // Spawn claude with the appropriate command
-  const claude = spawn('claude', [launchCommand], {
-    cwd: cwd,
-    stdio: 'inherit',
-    shell: true
-  });
-
-  claude.on('error', (err) => {
-    console.log('\x1b[31m%s\x1b[0m', '❌ Failed to launch Claude Code');
-    console.log(`   Run "claude" manually, then run ${launchCommand}`);
-  });
-
-  // Cleanup when Claude exits
-  claude.on('close', () => {
-    cleanupNulFile();
-  });
-});
+#!/usr/bin/env node
+
+const fs = require('fs');
+const path = require('path');
+const readline = require('readline');
+const { execSync, spawn } = require('child_process');
+const { formatUpdateSummary } = require('./update-summary.js');
+
+const cwd = process.cwd();
+const packageDir = path.dirname(__dirname);
+
+// Cleanup any stray 'nul' file immediately on startup (Windows /dev/null artifact)
+function cleanupNulFile() {
+  const nulFile = path.join(cwd, 'nul');
+  if (fs.existsSync(nulFile)) {
+    try {
+      fs.unlinkSync(nulFile);
+    } catch (e) {
+      // Ignore - file might be locked
+    }
+  }
+}
+cleanupNulFile();
+
+// Reserved Windows device names - never create files with these names
+const WINDOWS_RESERVED = ['CON', 'PRN', 'AUX', 'NUL', 'COM1', 'COM2', 'COM3', 'COM4',
+  'COM5', 'COM6', 'COM7', 'COM8', 'COM9', 'LPT1', 'LPT2', 'LPT3', 'LPT4', 'LPT5',
+  'LPT6', 'LPT7', 'LPT8', 'LPT9'];
+
+// Files/folders installed by autoconfig - don't backup these
+const AUTOCONFIG_FILES = ['commands', 'docs', 'agents', 'migration', 'hooks', 'scripts', 'sounds', 'rules', 'feedback', 'settings.json', 'settings.local.json', '.mcp.json', '.autoconfig-version', '.autoconfig-plugins.json'];
+
+function isReservedName(name) {
+  const baseName = name.replace(/\.[^.]*$/, '').toUpperCase();
+  return WINDOWS_RESERVED.includes(baseName);
+}
+
+function hasUserContent(claudeDir) {
+  // Check if .claude/ has any files beyond what autoconfig installs
+  if (!fs.existsSync(claudeDir)) return false;
+
+  const entries = fs.readdirSync(claudeDir);
+  for (const entry of entries) {
+    if (!AUTOCONFIG_FILES.includes(entry)) {
+      // Found something that's not from autoconfig
+      return true;
+    }
+  }
+  return false;
+}
+
+function formatTimestamp() {
+  const now = new Date();
+  const months = ['Jan', 'Feb', 'Mar', 'Apr', 'May', 'Jun',
+                  'Jul', 'Aug', 'Sep', 'Oct', 'Nov', 'Dec'];
+  const month = months[now.getMonth()];
+  const day = now.getDate();
+  const year = now.getFullYear();
+  const hour = now.getHours();
+  const min = String(now.getMinutes()).padStart(2, '0');
+  const ampm = hour >= 12 ? 'pm' : 'am';
+  const hour12 = hour % 12 || 12;
+
+  return `${month}-${day}-${year}_${hour12}-${min}${ampm}`;
+}
+
+// --pull-updates: Copy new update files from package to user's project
+function parseAppliedUpdates(filePath) {
+  if (!fs.existsSync(filePath)) return [];
+  const content = fs.readFileSync(filePath, 'utf8');
+  const match = content.match(/<!-- @applied\r?\n([\s\S]*?)-->/);
+  if (!match) return [];
+
+  return match[1].trim().split('\n')
+    .filter(line => line.trim())
+    .map(line => {
+      const idMatch = line.match(/^(\d{3})/);
+      return idMatch ? parseInt(idMatch[1], 10) : 0;
+    })
+    .filter(id => id > 0);
+}
+
+function getHighestAppliedId(appliedIds) {
+  return appliedIds.length > 0 ? Math.max(...appliedIds) : 0;
+}
+
+function pullUpdates() {
+  console.log('\x1b[36m%s\x1b[0m', '🔄 Checking for updates...');
+  console.log();
+
+  const userCmdPath = path.join(cwd, '.claude', 'commands', 'autoconfig-update.md');
+  const packageCmdPath = path.join(packageDir, '.claude', 'commands', 'autoconfig-update.md');
+  const packageUpdatesDir = path.join(packageDir, '.claude', 'updates');
+  const userUpdatesDir = path.join(cwd, '.claude', 'updates');
+
+  // Ensure .claude/commands/ exists
+  fs.mkdirSync(path.join(cwd, '.claude', 'commands'), { recursive: true });
+
+  // Refresh autoconfig-update.md (preserve user's @applied block)
+  if (fs.existsSync(packageCmdPath)) {
+    if (fs.existsSync(userCmdPath)) {
+      const userContent = fs.readFileSync(userCmdPath, 'utf8');
+      const packageContent = fs.readFileSync(packageCmdPath, 'utf8');
+      const userApplied = userContent.match(/<!-- @applied[\s\S]*?-->/);
+      if (userApplied) {
+        const merged = packageContent.replace(/<!-- @applied[\s\S]*?-->/, userApplied[0]);
+        fs.writeFileSync(userCmdPath, merged);
+      } else {
+        fs.copyFileSync(packageCmdPath, userCmdPath);
+      }
+    } else {
+      fs.copyFileSync(packageCmdPath, userCmdPath);
+    }
+  }
+
+  // Check for available updates in package
+  if (!fs.existsSync(packageUpdatesDir)) {
+    console.log('\x1b[32m%s\x1b[0m', '✅ Already up to date');
+    return;
+  }
+
+  const appliedIds = parseAppliedUpdates(userCmdPath);
+  const highestApplied = getHighestAppliedId(appliedIds);
+
+  const updateFiles = fs.readdirSync(packageUpdatesDir).filter(f => f.endsWith('.md'));
+  const newUpdates = updateFiles.filter(file => {
+    const match = file.match(/^(\d{3})-/);
+    if (!match) return false;
+    return parseInt(match[1], 10) > highestApplied;
+  });
+
+  if (newUpdates.length === 0) {
+    console.log('\x1b[32m%s\x1b[0m', '✅ Already up to date');
+    return;
+  }
+
+  // Copy new update files
+  fs.mkdirSync(userUpdatesDir, { recursive: true });
+  for (const file of newUpdates) {
+    fs.copyFileSync(
+      path.join(packageUpdatesDir, file),
+      path.join(userUpdatesDir, file)
+    );
+  }
+
+  console.log('\x1b[32m%s\x1b[0m', `✅ Copied ${newUpdates.length} new update${newUpdates.length > 1 ? 's' : ''} to .claude/updates/`);
+  console.log();
+  console.log('Run \x1b[36mclaude /autoconfig-update\x1b[0m to review and install updates.');
+}
+
+if (process.argv.includes('--pull-updates')) {
+  pullUpdates();
+  process.exit(0);
+}
+
+// ============================================================================
+// Settings merge helpers (shared by the upgrade path and the plugin installer)
+// ============================================================================
+
+// Rewrite legacy cwd-relative hook commands ("node .claude/hooks/X.js") to the
+// ${CLAUDE_PROJECT_DIR:-.}-anchored form IN PLACE, mutating the given settings object.
+// Two reasons, both from the 2026-07-08 stuck-title postmortem:
+//   1. cwd-relative commands go MODULE_NOT_FOUND the moment a session cd's away from the
+//      project root — every matching tool call then spews a red hook error until cwd returns.
+//   2. mergeSettingsInto dedups by EXACT command string, so without this rewrite an upgrade
+//      would ADD the anchored template entry alongside the user's old relative one -> the
+//      hook runs twice per event.
+// Only known autoconfig-managed hook filenames are rewritten; user-authored commands are
+// never touched.
+function migrateLegacyHookCommands(userSettings) {
+  if (!userSettings || !userSettings.hooks) return;
+  const LEGACY = /^node \.claude\/hooks\/([\w.-]+\.js)$/;
+  for (const matchers of Object.values(userSettings.hooks)) {
+    if (!Array.isArray(matchers)) continue;
+    for (const matcher of matchers) {
+      for (const hook of matcher.hooks || []) {
+        const m = typeof hook.command === 'string' && hook.command.match(LEGACY);
+        if (m) hook.command = 'node "${CLAUDE_PROJECT_DIR:-.}/.claude/hooks/' + m[1] + '"';
+      }
+    }
+  }
+}
+
+// Additively fold a settings fragment (hooks / env / permissions) into an existing
+// settings object, mutating and returning it.
+//   - hooks: add hook commands that don't already exist (dedup by command string, per event)
+//   - env:   add keys the user hasn't set (never overwrite an existing value)
+//   - permissions.allow/deny: add missing rules (and migrate deprecated :* syntax)
+function mergeSettingsInto(userSettings, fragment) {
+  if (fragment.hooks) {
+    if (!userSettings.hooks) userSettings.hooks = {};
+    for (const [event, matchers] of Object.entries(fragment.hooks)) {
+      if (!userSettings.hooks[event]) {
+        userSettings.hooks[event] = matchers;
+      } else {
+        // Add any hook commands that don't already exist
+        for (const matcher of matchers) {
+          for (const hook of matcher.hooks || []) {
+            const exists = userSettings.hooks[event].some(m =>
+              (m.hooks || []).some(h => h.command === hook.command)
+            );
+            if (!exists) {
+              const existingMatcher = userSettings.hooks[event].find(m => m.matcher === matcher.matcher);
+              if (existingMatcher) {
+                existingMatcher.hooks = existingMatcher.hooks || [];
+                existingMatcher.hooks.push(hook);
+              } else {
+                userSettings.hooks[event].push(matcher);
+              }
+            }
+          }
+        }
+      }
+    }
+  }
+
+  if (fragment.env) {
+    if (!userSettings.env) userSettings.env = {};
+    for (const [key, value] of Object.entries(fragment.env)) {
+      if (!(key in userSettings.env)) userSettings.env[key] = value;
+    }
+  }
+
+  if (fragment.permissions) {
+    if (!userSettings.permissions) userSettings.permissions = {};
+    for (const key of ['allow', 'deny']) {
+      if (!fragment.permissions[key]) continue;
+      if (!userSettings.permissions[key]) {
+        userSettings.permissions[key] = fragment.permissions[key];
+      } else {
+        // Migrate deprecated :* syntax to space-* in existing entries
+        userSettings.permissions[key] = userSettings.permissions[key].map(rule =>
+          rule.replace(/^(Bash\([^)]*):(\*\))$/, '$1 $2')
+        );
+        for (const rule of fragment.permissions[key]) {
+          if (!userSettings.permissions[key].includes(rule)) {
+            userSettings.permissions[key].push(rule);
+          }
+        }
+      }
+    }
+  }
+
+  return userSettings;
+}
+
+// Inverse of mergeSettingsInto: strip a fragment's contributions back out. Only removes
+// what the fragment added (dedup-safe), leaving the user's own entries untouched.
+function unmergeSettingsFrom(userSettings, fragment) {
+  if (fragment.hooks && userSettings.hooks) {
+    for (const [event, matchers] of Object.entries(fragment.hooks)) {
+      if (!userSettings.hooks[event]) continue;
+      const commands = new Set();
+      for (const matcher of matchers) {
+        for (const hook of matcher.hooks || []) {
+          if (hook.command) commands.add(hook.command);
+        }
+      }
+      userSettings.hooks[event] = userSettings.hooks[event]
+        .map(m => {
+          if (m.hooks) m.hooks = m.hooks.filter(h => !commands.has(h.command));
+          return m;
+        })
+        .filter(m => (m.hooks || []).length > 0);
+      if (userSettings.hooks[event].length === 0) delete userSettings.hooks[event];
+    }
+    if (Object.keys(userSettings.hooks).length === 0) delete userSettings.hooks;
+  }
+
+  if (fragment.env && userSettings.env) {
+    for (const [key, value] of Object.entries(fragment.env)) {
+      if (userSettings.env[key] === value) delete userSettings.env[key];
+    }
+    if (Object.keys(userSettings.env).length === 0) delete userSettings.env;
+  }
+
+  if (fragment.permissions && userSettings.permissions) {
+    for (const key of ['allow', 'deny']) {
+      if (!fragment.permissions[key] || !userSettings.permissions[key]) continue;
+      const remove = new Set(fragment.permissions[key]);
+      userSettings.permissions[key] = userSettings.permissions[key].filter(r => !remove.has(r));
+    }
+  }
+
+  return userSettings;
+}
+
+// ============================================================================
+// Plugin system: install / remove / list drop-in add-on plugins.
+//
+// A plugin is a folder containing a plugin.json manifest:
+//   {
+//     "name": "terminal-title",
+//     "version": "1.0.0",
+//     "description": "...",
+//     "files":    [ { "from": "hooks/x.js", "to": "hooks/x.js" } ],  // "to" is relative to <project>/.claude
+//     "settings": { "env": {...}, "hooks": {...}, "permissions": {...} }  // folded into .claude/settings.json
+//   }
+//
+// Installed plugins are tracked in .claude/.autoconfig-plugins.json so `plugin remove`
+// cleanly undoes both the copied files and the settings contributions. The free core
+// ships only this generic loader — paid/closed plugins live and are delivered separately.
+// ============================================================================
+
+const PLUGINS_LEDGER = '.autoconfig-plugins.json';
+
+function readPluginsLedger(claudeDir) {
+  const p = path.join(claudeDir, PLUGINS_LEDGER);
+  if (!fs.existsSync(p)) return {};
+  try { return JSON.parse(fs.readFileSync(p, 'utf8')); } catch { return {}; }
+}
+
+function writePluginsLedger(claudeDir, ledger) {
+  fs.mkdirSync(claudeDir, { recursive: true });
+  fs.writeFileSync(path.join(claudeDir, PLUGINS_LEDGER), JSON.stringify(ledger, null, 2));
+}
+
+function loadManifest(pluginDir) {
+  const manifestPath = path.join(pluginDir, 'plugin.json');
+  if (!fs.existsSync(manifestPath)) throw new Error(`no plugin.json found in ${pluginDir}`);
+  let manifest;
+  try {
+    manifest = JSON.parse(fs.readFileSync(manifestPath, 'utf8'));
+  } catch (e) {
+    throw new Error(`plugin.json is not valid JSON: ${e.message}`);
+  }
+  if (!manifest.name || typeof manifest.name !== 'string') {
+    throw new Error('plugin.json must declare a string "name"');
+  }
+  if (manifest.files && !Array.isArray(manifest.files)) {
+    throw new Error('plugin.json "files" must be an array');
+  }
+  if (!manifest.files) manifest.files = [];
+  return manifest;
+}
+
+function pluginAdd(pluginArg, claudeDir) {
+  const pluginDir = path.resolve(cwd, pluginArg);
+  const manifest = loadManifest(pluginDir);
+  console.log('\x1b[36m%s\x1b[0m', `📦 Installing plugin: ${manifest.name}${manifest.version ? ' v' + manifest.version : ''}`);
+
+  // 1. Copy declared files into <project>/.claude/<to>
+  const installedFiles = [];
+  for (const file of manifest.files) {
+    if (!file || !file.from || !file.to) throw new Error('each "files" entry must have "from" and "to"');
+    const src = path.resolve(pluginDir, file.from);
+    if (!fs.existsSync(src)) throw new Error(`plugin file not found: ${file.from}`);
+    const dest = path.join(claudeDir, file.to);
+    if (isReservedName(path.basename(dest))) throw new Error(`refusing to write reserved filename: ${file.to}`);
+    fs.mkdirSync(path.dirname(dest), { recursive: true });
+    fs.copyFileSync(src, dest);
+    installedFiles.push(file.to);
+    console.log('\x1b[90m%s\x1b[0m', `   + .claude/${file.to}`);
+  }
+
+  // 2. Fold the settings fragment into .claude/settings.json (clone first to avoid aliasing the ledger copy)
+  if (manifest.settings) {
+    const settingsPath = path.join(claudeDir, 'settings.json');
+    let userSettings = {};
+    if (fs.existsSync(settingsPath)) {
+      try { userSettings = JSON.parse(fs.readFileSync(settingsPath, 'utf8')); } catch { userSettings = {}; }
+    }
+    mergeSettingsInto(userSettings, JSON.parse(JSON.stringify(manifest.settings)));
+    fs.mkdirSync(claudeDir, { recursive: true });
+    fs.writeFileSync(settingsPath, JSON.stringify(userSettings, null, 2));
+    console.log('\x1b[90m%s\x1b[0m', '   ✎ merged settings.json (hooks / env / permissions)');
+  }
+
+  // 3. Record in the ledger so removal can cleanly undo everything
+  const ledger = readPluginsLedger(claudeDir);
+  ledger[manifest.name] = {
+    version: manifest.version || null,
+    files: installedFiles,
+    settings: manifest.settings || null,
+    installedAt: new Date().toISOString()
+  };
+  writePluginsLedger(claudeDir, ledger);
+  console.log('\x1b[32m%s\x1b[0m', `✅ Installed ${manifest.name}`);
+}
+
+function pluginRemove(name, claudeDir) {
+  const ledger = readPluginsLedger(claudeDir);
+  const entry = ledger[name];
+  if (!entry) throw new Error(`plugin "${name}" is not installed`);
+  console.log('\x1b[36m%s\x1b[0m', `🗑  Removing plugin: ${name}`);
+
+  // 1. Delete the files the plugin installed
+  for (const rel of entry.files || []) {
+    const p = path.join(claudeDir, rel);
+    if (fs.existsSync(p)) {
+      fs.rmSync(p, { force: true });
+      console.log('\x1b[90m%s\x1b[0m', `   - .claude/${rel}`);
+    }
+  }
+
+  // 2. Revert the settings contributions
+  if (entry.settings) {
+    const settingsPath = path.join(claudeDir, 'settings.json');
+    if (fs.existsSync(settingsPath)) {
+      try {
+        const userSettings = JSON.parse(fs.readFileSync(settingsPath, 'utf8'));
+        unmergeSettingsFrom(userSettings, entry.settings);
+        fs.writeFileSync(settingsPath, JSON.stringify(userSettings, null, 2));
+        console.log('\x1b[90m%s\x1b[0m', '   ✎ reverted settings.json contributions');
+      } catch { /* leave settings intact if unparsable */ }
+    }
+  }
+
+  // 3. Drop it from the ledger
+  delete ledger[name];
+  writePluginsLedger(claudeDir, ledger);
+  console.log('\x1b[32m%s\x1b[0m', `✅ Removed ${name}`);
+}
+
+function pluginList(claudeDir) {
+  const ledger = readPluginsLedger(claudeDir);
+  const names = Object.keys(ledger);
+  if (names.length === 0) {
+    console.log('\x1b[90m%s\x1b[0m', 'No plugins installed.');
+    return;
+  }
+  console.log('\x1b[36m%s\x1b[0m', 'Installed plugins:');
+  for (const name of names) {
+    const e = ledger[name];
+    const n = (e.files || []).length;
+    console.log(`   • ${name}${e.version ? ' v' + e.version : ''}  (${n} file${n === 1 ? '' : 's'})`);
+  }
+}
+
+function runPluginCommand(argv) {
+  const sub = argv[3];
+  const arg = argv[4];
+  const claudeDir = path.join(cwd, '.claude');
+  try {
+    if (sub === 'add' || sub === 'install') {
+      if (!arg) throw new Error('usage: claude-code-autoconfig plugin add <path-to-plugin-dir>');
+      pluginAdd(arg, claudeDir);
+    } else if (sub === 'remove' || sub === 'rm' || sub === 'uninstall') {
+      if (!arg) throw new Error('usage: claude-code-autoconfig plugin remove <name>');
+      pluginRemove(arg, claudeDir);
+    } else if (sub === 'list' || sub === 'ls') {
+      pluginList(claudeDir);
+    } else {
+      console.log('Usage:');
+      console.log('  claude-code-autoconfig plugin add <dir>      Install a plugin from a folder');
+      console.log('  claude-code-autoconfig plugin remove <name>  Uninstall a plugin');
+      console.log('  claude-code-autoconfig plugin list           List installed plugins');
+      process.exit(sub ? 1 : 0);
+    }
+  } catch (err) {
+    console.log('\x1b[31m%s\x1b[0m', `❌ ${err.message}`);
+    process.exit(1);
+  }
+}
+
+if (process.argv[2] === 'plugin') {
+  runPluginCommand(process.argv);
+  process.exit(0);
+}
+
+const forceMode = process.argv.includes('--force');
+
+// Detect if running inside Claude Code session.
+// CLAUDECODE=1 alone is not reliable: env vars inherit into every descendant
+// process (e.g. VS Code launched from a Claude session, and any terminal it
+// spawns). A genuine in-agent run has piped stdio (isTTY falsy), while a human
+// terminal has a real TTY — so require both signals before blocking.
+const insideClaude = process.env.CLAUDECODE === '1' && !process.stdout.isTTY;
+
+console.log('\x1b[36m%s\x1b[0m', '🚀 Claude Code Autoconfig');
+console.log();
+
+// Block early if running inside Claude Code (unless --bootstrap)
+if (insideClaude && !process.argv.includes('--bootstrap')) {
+  console.log('\x1b[31m%s\x1b[0m', '● The tool needs to be run from a regular terminal, not from within Claude Code.');
+  console.log();
+  console.log('   Open a separate terminal window and run:');
+  console.log();
+  console.log('   \x1b[36mnpx claude-code-autoconfig@latest\x1b[0m');
+  console.log();
+  process.exit(0);
+}
+
+// Step 1: Check if Claude Code is installed
+function isClaudeInstalled() {
+  try {
+    execSync('claude --version', { stdio: 'ignore' });
+    return true;
+  } catch {
+    return false;
+  }
+}
+
+function installClaude() {
+  console.log('\x1b[33m%s\x1b[0m', '⚠️  Claude Code not found. Installing...');
+  console.log();
+  try {
+    execSync('npm install -g @anthropic-ai/claude-code', { stdio: 'inherit' });
+    console.log();
+    console.log('\x1b[32m%s\x1b[0m', '✅ Claude Code installed');
+    return true;
+  } catch (err) {
+    console.log('\x1b[31m%s\x1b[0m', '❌ Failed to install Claude Code');
+    console.log('   Install manually: npm install -g @anthropic-ai/claude-code');
+    return false;
+  }
+}
+
+if (!isClaudeInstalled()) {
+  if (!installClaude()) {
+    process.exit(1);
+  }
+}
+
+console.log('\x1b[32m%s\x1b[0m', '✅ Claude Code detected');
+
+// Step 2: Backup existing .claude/ if it has user content
+const claudeDest = path.join(cwd, '.claude');
+const SKIP_BACKUP = ['migration']; // Don't backup the migration folder itself
+let migrationPath = null;
+
+// Diagnostic: log pre-install state
+console.log();
+console.log('\x1b[90m%s\x1b[0m', '── Pre-install state ──');
+console.log('\x1b[90m%s\x1b[0m', `   Working dir: ${cwd}`);
+const claudeMdExists = fs.existsSync(path.join(cwd, 'CLAUDE.md'));
+console.log('\x1b[90m%s\x1b[0m', `   CLAUDE.md: ${claudeMdExists ? 'exists' : 'not found'}`);
+if (claudeMdExists) {
+  const claudeMdContent = fs.readFileSync(path.join(cwd, 'CLAUDE.md'), 'utf8');
+  const hasMarker = claudeMdContent.includes('AUTO-GENERATED BY /autoconfig');
+  console.log('\x1b[90m%s\x1b[0m', `   CLAUDE.md autoconfig marker: ${hasMarker ? 'yes' : 'no'}`);
+}
+if (fs.existsSync(claudeDest)) {
+  const entries = fs.readdirSync(claudeDest);
+  console.log('\x1b[90m%s\x1b[0m', `   .claude/ exists: yes (${entries.length} entries)`);
+  for (const e of entries) {
+    const isAutoconfig = AUTOCONFIG_FILES.includes(e);
+    console.log('\x1b[90m%s\x1b[0m', `     ${isAutoconfig ? '·' : '▸'} ${e}${isAutoconfig ? '' : ' (user content)'}`);
+  }
+  const docsHtml = path.join(claudeDest, 'docs', 'autoconfig.docs.html');
+  console.log('\x1b[90m%s\x1b[0m', `   autoconfig.docs.html: ${fs.existsSync(docsHtml) ? 'exists' : 'not found'}`);
+} else {
+  console.log('\x1b[90m%s\x1b[0m', '   .claude/ exists: no');
+}
+console.log('\x1b[90m%s\x1b[0m', '───────────────────────');
+console.log();
+
+function copyDirForBackup(src, dest) {
+  fs.mkdirSync(dest, { recursive: true });
+  const entries = fs.readdirSync(src, { withFileTypes: true });
+
+  for (const entry of entries) {
+    if (SKIP_BACKUP.includes(entry.name)) continue;
+    if (AUTOCONFIG_FILES.includes(entry.name)) continue; // Skip autoconfig-installed files
+    if (isReservedName(entry.name)) continue;
+
+    const srcPath = path.join(src, entry.name);
+    const destPath = path.join(dest, entry.name);
+
+    if (entry.isDirectory()) {
+      copyDirForBackup(srcPath, destPath);
+    } else {
+      fs.copyFileSync(srcPath, destPath);
+    }
+  }
+}
+
+function collectFiles(dir, prefix = '') {
+  const files = [];
+  const entries = fs.readdirSync(dir, { withFileTypes: true });
+  for (const entry of entries) {
+    const relPath = prefix ? `${prefix}/${entry.name}` : entry.name;
+    if (entry.isDirectory()) {
+      files.push(...collectFiles(path.join(dir, entry.name), relPath));
+    } else {
+      files.push(relPath);
+    }
+  }
+  return files;
+}
+
+if (fs.existsSync(claudeDest) && hasUserContent(claudeDest)) {
+  const userEntries = fs.readdirSync(claudeDest).filter(e =>
+    e !== 'migration' && !AUTOCONFIG_FILES.includes(e)
+  );
+  console.log('\x1b[90m%s\x1b[0m', `   Backup triggered by user content: ${userEntries.join(', ')}`);
+
+  const timestamp = formatTimestamp();
+  const migrationDir = path.join(claudeDest, 'migration');
+  migrationPath = path.join(migrationDir, timestamp);
+
+  fs.mkdirSync(migrationPath, { recursive: true });
+
+  // Copy user files to backup (excluding autoconfig-installed files)
+  for (const entry of userEntries) {
+    const srcPath = path.join(claudeDest, entry);
+    const destPath = path.join(migrationPath, entry);
+
+    if (fs.statSync(srcPath).isDirectory()) {
+      copyDirForBackup(srcPath, destPath);
+    } else {
+      fs.copyFileSync(srcPath, destPath);
+    }
+  }
+
+  // Collect backed up files for metadata
+  const backedUpFiles = collectFiles(migrationPath);
+
+  if (backedUpFiles.length > 0) {
+    // Write latest.json for the guide
+    fs.writeFileSync(path.join(migrationDir, 'latest.json'), JSON.stringify({
+      timestamp: timestamp,
+      backedUpFiles: backedUpFiles
+    }, null, 2));
+
+    // Create README inside the dated backup folder
+    const backupReadme = `# Migration Backup: ${timestamp}
+
+This folder contains a backup of your previous .claude/ configuration.
+
+## Why This Backup Exists
+
+You ran \`npx claude-code-autoconfig\` on a project that already had Claude Code configured.
+Your previous files were backed up here before the new configuration was applied.
+
+## Backed Up Files
+
+${backedUpFiles.map(f => `- ${f}`).join('\n')}
+
+## Restoring Files
+
+To restore any file, copy it from this folder back to \`.claude/\`.
+
+For example:
+\`\`\`bash
+cp .claude/migration/${timestamp}/settings.json .claude/settings.json
+\`\`\`
+`;
+    fs.writeFileSync(path.join(migrationPath, 'README.md'), backupReadme);
+
+    console.log('\x1b[33m%s\x1b[0m', `⚠️  Backed up existing config to .claude/migration/${timestamp}/`);
+  } else {
+    // No user files to backup, remove the empty migration folder
+    fs.rmdirSync(migrationPath, { recursive: true });
+  }
+}
+
+// Read previous installed version (before copying overwrites it)
+const versionFile = path.join(claudeDest, '.autoconfig-version');
+const previousVersion = fs.existsSync(versionFile)
+  ? fs.readFileSync(versionFile, 'utf8').trim()
+  : null;
+const currentVersion = require(path.join(packageDir, 'package.json')).version;
+
+// Detect upgrade vs fresh install (must run BEFORE copying files)
+const isUpgrade = (() => {
+  // Indicator 1: CLAUDE.md has autoconfig marker
+  const claudeMdPath = path.join(cwd, 'CLAUDE.md');
+  if (fs.existsSync(claudeMdPath)) {
+    const content = fs.readFileSync(claudeMdPath, 'utf8');
+    if (content.includes('AUTO-GENERATED BY /autoconfig')) {
+      console.log('\x1b[90m%s\x1b[0m', '   Upgrade detected: CLAUDE.md has autoconfig marker');
+      return true;
+    }
+  }
+  // Indicator 2: docs HTML exists (unique autoconfig artifact)
+  const docsPath = path.join(claudeDest, 'docs', 'autoconfig.docs.html');
+  if (fs.existsSync(docsPath)) {
+    console.log('\x1b[90m%s\x1b[0m', '   Upgrade detected: autoconfig.docs.html exists');
+    return true;
+  }
+  console.log('\x1b[90m%s\x1b[0m', '   Install type: fresh (no previous autoconfig found)');
+  return false;
+})();
+
+// Step 3: Copy minimal bootstrap (commands/, docs/, agents/, feedback/, hooks/)
+const commandsSrc = path.join(packageDir, '.claude', 'commands');
+const docsSrc = path.join(packageDir, '.claude', 'docs');
+const agentsSrc = path.join(packageDir, '.claude', 'agents');
+const feedbackSrc = path.join(packageDir, '.claude', 'feedback');
+const hooksSrc = path.join(packageDir, '.claude', 'hooks');
+const scriptsSrc = path.join(packageDir, '.claude', 'scripts');
+
+// Files that exist in the dev repo but should never be installed to user projects
+const DEV_ONLY_FILES = ['deploy-to-npmjs.md'];
+
+function copyDir(src, dest) {
+  fs.mkdirSync(dest, { recursive: true });
+  const entries = fs.readdirSync(src, { withFileTypes: true });
+
+  for (const entry of entries) {
+    if (isReservedName(entry.name)) continue;
+    if (DEV_ONLY_FILES.includes(entry.name)) continue;
+
+    const srcPath = path.join(src, entry.name);
+    const destPath = path.join(dest, entry.name);
+
+    if (entry.isDirectory()) {
+      copyDir(srcPath, destPath);
+    } else {
+      fs.copyFileSync(srcPath, destPath);
+    }
+  }
+}
+
+function copyDirIfMissing(src, dest) {
+  fs.mkdirSync(dest, { recursive: true });
+  const entries = fs.readdirSync(src, { withFileTypes: true });
+  for (const entry of entries) {
+    if (isReservedName(entry.name)) continue;
+    if (DEV_ONLY_FILES.includes(entry.name)) continue;
+    const srcPath = path.join(src, entry.name);
+    const destPath = path.join(dest, entry.name);
+    if (entry.isDirectory()) {
+      copyDirIfMissing(srcPath, destPath);
+    } else if (!fs.existsSync(destPath)) {
+      fs.copyFileSync(srcPath, destPath);
+    }
+  }
+}
+
+// Parse @version from command file content
+function parseCommandVersion(content) {
+  const match = content.match(/<!-- @version (\d+) -->/);
+  return match ? parseInt(match[1], 10) : 0;
+}
+
+// Track what commands are new/updated for summary
+const commandsDest = path.join(claudeDest, 'commands');
+const existingCommandContents = new Map();
+if (fs.existsSync(commandsDest)) {
+  for (const f of fs.readdirSync(commandsDest).filter(f => f.endsWith('.md'))) {
+    existingCommandContents.set(f, fs.readFileSync(path.join(commandsDest, f), 'utf8'));
+  }
+}
+
+// Copy commands (required for /autoconfig to work)
+// Preserve user's saved @screenshotDir in gls.md across upgrades
+const glsDest = path.join(claudeDest, 'commands', 'gls.md');
+let savedScreenshotDir = null;
+if (fs.existsSync(glsDest)) {
+  const firstLine = fs.readFileSync(glsDest, 'utf8').split(/\r?\n/)[0];
+  const match = firstLine.match(/<!-- @screenshotDir (.+?) -->/);
+  if (match) savedScreenshotDir = match[1].trim();
+}
+
+if (fs.existsSync(commandsSrc)) {
+  copyDir(commandsSrc, path.join(claudeDest, 'commands'));
+} else {
+  console.log('\x1b[31m%s\x1b[0m', '❌ Error: commands directory not found');
+  process.exit(1);
+}
+
+// Detect new and updated commands (with version tracking)
+const newCommands = [];
+const updatedCommands = []; // { file, oldVersion, newVersion }
+for (const f of fs.readdirSync(commandsDest).filter(f => f.endsWith('.md') && !DEV_ONLY_FILES.includes(f))) {
+  const newContent = fs.readFileSync(path.join(commandsDest, f), 'utf8');
+  if (!existingCommandContents.has(f)) {
+    newCommands.push({ file: f, version: parseCommandVersion(newContent) });
+  } else if (newContent !== existingCommandContents.get(f)) {
+    const oldVersion = parseCommandVersion(existingCommandContents.get(f));
+    const newVersion = parseCommandVersion(newContent);
+    updatedCommands.push({ file: f, oldVersion, newVersion });
+  }
+}
+
+// Restore saved screenshot dir after commands overwrite
+if (savedScreenshotDir && fs.existsSync(glsDest)) {
+  const content = fs.readFileSync(glsDest, 'utf8');
+  fs.writeFileSync(glsDest, content.replace(
+    /<!-- @screenshotDir\s*-->/,
+    `<!-- @screenshotDir ${savedScreenshotDir} -->`
+  ));
+}
+
+// Copy docs (only .html files — skip internal planning docs)
+if (fs.existsSync(docsSrc)) {
+  const docsDestDir = path.join(claudeDest, 'docs');
+  fs.mkdirSync(docsDestDir, { recursive: true });
+  for (const file of fs.readdirSync(docsSrc)) {
+    if (file.endsWith('.html')) {
+      fs.copyFileSync(path.join(docsSrc, file), path.join(docsDestDir, file));
+    }
+  }
+}
+
+// Copy agents if exists
+if (fs.existsSync(agentsSrc)) {
+  copyDir(agentsSrc, path.join(claudeDest, 'agents'));
+}
+
+// Copy feedback template (preserve user customizations unless --force)
+if (fs.existsSync(feedbackSrc)) {
+  const copyFn = forceMode ? copyDir : copyDirIfMissing;
+  copyFn(feedbackSrc, path.join(claudeDest, 'feedback'));
+}
+
+// Copy hooks directory. Genuinely user-authorable hooks are preserved on upgrade
+// (copyDirIfMissing), BUT the cca-managed title-hook files are ALWAYS refreshed so bug-fixes
+// reach existing installs — without this, copyDirIfMissing leaves stale hooks in place forever
+// (same always-overwrite rationale as scripts/ below). --force already overwrites everything.
+const MANAGED_HOOKS = ['terminal-title.js', 'terminal-title.directive.md', 'arcade-beeps.js'];
+if (fs.existsSync(hooksSrc)) {
+  const copyFn = forceMode ? copyDir : copyDirIfMissing;
+  copyFn(hooksSrc, path.join(claudeDest, 'hooks'));
+  if (!forceMode) {
+    const hooksDestDir = path.join(claudeDest, 'hooks');
+    for (const name of MANAGED_HOOKS) {
+      const src = path.join(hooksSrc, name);
+      if (fs.existsSync(src)) fs.copyFileSync(src, path.join(hooksDestDir, name));
+    }
+  }
+}
+
+// Copy scripts directory (always overwrite — these are utility scripts, not user-customizable)
+if (fs.existsSync(scriptsSrc)) {
+  copyDir(scriptsSrc, path.join(claudeDest, 'scripts'));
+}
+
+// Copy sounds directory (binary status-cue assets for arcade-beeps; always overwrite)
+const soundsSrc = path.join(packageDir, '.claude', 'sounds');
+if (fs.existsSync(soundsSrc)) {
+  copyDir(soundsSrc, path.join(claudeDest, 'sounds'));
+}
+
+// Note: updates directory is no longer copied to user projects.
+// Update files are only used by --pull-updates (for /autoconfig-update).
+// On fresh install, all updates are pre-marked as applied and the content
+// is already baked into /autoconfig itself, so the files are unnecessary.
+
+// Copy settings.json — fresh install gets full copy, upgrades get hooks + permissions merged
+const settingsSrc = path.join(packageDir, '.claude', 'settings.json');
+const settingsDest = path.join(claudeDest, 'settings.json');
+if (fs.existsSync(settingsSrc)) {
+  if (forceMode || !fs.existsSync(settingsDest)) {
+    fs.copyFileSync(settingsSrc, settingsDest);
+  } else {
+    // Merge hooks and permissions from package into existing settings
+    try {
+      const pkgSettings = JSON.parse(fs.readFileSync(settingsSrc, 'utf8'));
+      const userSettings = JSON.parse(fs.readFileSync(settingsDest, 'utf8'));
+
+      // Upgrade legacy relative hook commands FIRST so the anchored template entries below
+      // dedupe against them instead of doubling up (see migrateLegacyHookCommands).
+      migrateLegacyHookCommands(userSettings);
+
+      // Additively fold package hooks/env/permissions into the user's settings
+      // (shared with the plugin installer — see mergeSettingsInto).
+      mergeSettingsInto(userSettings, pkgSettings);
+
+      fs.writeFileSync(settingsDest, JSON.stringify(userSettings, null, 2));
+    } catch (err) {
+      // If merge fails, don't break the install
+    }
+  }
+}
+
+console.log('\x1b[32m%s\x1b[0m', '✅ Prepared /autoconfig command');
+
+// Show what was installed/updated
+if (isUpgrade && (newCommands.length > 0 || updatedCommands.length > 0)) {
+  console.log();
+  for (const { file, version } of newCommands) {
+    const name = file.replace('.md', '');
+    const ver = version > 0 ? ` v${version}` : '';
+    console.log('\x1b[36m%s\x1b[0m', `   + /${name}${ver} (new)`);
+  }
+  for (const { file, oldVersion, newVersion } of updatedCommands) {
+    if (oldVersion > 0 && newVersion > 0 && oldVersion === newVersion) continue;
+    const name = file.replace('.md', '');
+    const ver = (oldVersion > 0 && newVersion > 0) ? ` (v${oldVersion} → v${newVersion})` : ' (updated)';
+    console.log('\x1b[33m%s\x1b[0m', `   ↑ /${name}${ver}`);
+  }
+}
+
+
+// Pre-mark all bundled updates as applied when the @applied block is empty.
+// On fresh installs, /autoconfig handles their content (e.g., debug methodology in MEMORY.md).
+// On upgrades from pre-update-system versions, these updates are already baked in.
+// The regex only matches an empty @applied block, so this is safe to run unconditionally.
+{
+  const userCmdPath = path.join(claudeDest, 'commands', 'autoconfig-update.md');
+  const packageUpdatesDir = path.join(packageDir, '.claude', 'updates');
+  if (fs.existsSync(userCmdPath) && fs.existsSync(packageUpdatesDir)) {
+    const updateFiles = fs.readdirSync(packageUpdatesDir)
+      .filter(f => f.endsWith('.md') && /^\d{3}-/.test(f))
+      .sort();
+    if (updateFiles.length > 0) {
+      const appliedLines = updateFiles.map(file => {
+        const id = file.match(/^(\d{3})-/)[1];
+        const content = fs.readFileSync(path.join(packageUpdatesDir, file), 'utf8');
+        const titleMatch = content.match(/<!-- @title (.+?) -->/);
+        const title = titleMatch ? titleMatch[1] : file.replace(/^\d{3}-/, '').replace(/\.md$/, '');
+        return `${id} - ${title}`;
+      });
+      const cmdContent = fs.readFileSync(userCmdPath, 'utf8');
+      const updated = cmdContent.replace(
+        /<!-- @applied\r?\n-->/,
+        `<!-- @applied\n${appliedLines.join('\n')}\n-->`
+      );
+      fs.writeFileSync(userCmdPath, updated);
+    }
+  }
+}
+
+// Clean up updates directory — updates are tracked in the @applied block,
+// so the .md files don't need to stay in the user's project
+const userUpdatesDir = path.join(claudeDest, 'updates');
+if (fs.existsSync(userUpdatesDir)) {
+  fs.rmSync(userUpdatesDir, { recursive: true });
+}
+
+// Migrate FEEDBACK.md content to CLAUDE.md Discoveries section (one-time, on upgrade)
+if (isUpgrade) {
+  const claudeMdPath = path.join(cwd, 'CLAUDE.md');
+  const feedbackPath = path.join(claudeDest, 'feedback', 'FEEDBACK.md');
+
+  if (fs.existsSync(claudeMdPath) && fs.existsSync(feedbackPath)) {
+    const feedbackContent = fs.readFileSync(feedbackPath, 'utf8');
+
+    // Extract custom content (everything after the first --- separator following the header)
+    const feedbackLines = feedbackContent.split(/\r?\n/);
+    let firstSeparatorIdx = -1;
+    for (let i = 0; i < feedbackLines.length; i++) {
+      if (feedbackLines[i].trim() === '---') {
+        firstSeparatorIdx = i;
+        break;
+      }
+    }
+
+    if (firstSeparatorIdx >= 0) {
+      const customContent = feedbackLines.slice(firstSeparatorIdx + 1).join('\n').trim();
+
+      // Only migrate if there's custom content and it hasn't already been migrated
+      const claudeMdContent = fs.readFileSync(claudeMdPath, 'utf8');
+      const hasDiscoveries = claudeMdContent.includes('## Discoveries');
+
+      if (customContent.length > 0 && !hasDiscoveries) {
+        // Add Discoveries section to CLAUDE.md
+        const discoveriesSection = `\n\n## Discoveries\n<!-- Claude: append project-specific learnings, gotchas, and context below. This section persists across /autoconfig runs. -->\n\n${customContent}\n`;
+        fs.writeFileSync(claudeMdPath, claudeMdContent + discoveriesSection);
+
+        // Reset FEEDBACK.md to clean template
+        const cleanTemplate = `<!-- @description Human-authored corrections and guidance for Claude. Reserved for team feedback only — Claude must not write here. This directory persists across /autoconfig runs. -->\n\n# Team Feedback\n\n**This file is for human-authored corrections and guidance only.**\nClaude reads this file but must never write to it. When Claude discovers project context, gotchas, or learnings, it should append to the \`## Discoveries\` section in CLAUDE.md instead.\n\n---\n\n`;
+        fs.writeFileSync(feedbackPath, cleanTemplate);
+
+        // Count migrated sections
+        const sectionCount = (customContent.match(/^## /gm) || []).length || 1;
+        console.log('\x1b[36m%s\x1b[0m', `   📋 Migrated ${sectionCount} section${sectionCount > 1 ? 's' : ''} from FEEDBACK.md → CLAUDE.md Discoveries`);
+      }
+    }
+  }
+}
+
+// Write current version marker
+fs.writeFileSync(versionFile, currentVersion);
+
+const launchCommand = isUpgrade ? '/autoconfig-update' : '/autoconfig';
+
+// --bootstrap: copy files only, exit silently (used by /autoconfig inside Claude)
+const bootstrapMode = process.argv.includes('--bootstrap');
+if (bootstrapMode) {
+  process.exit(0);
+}
+
+// Step 4: Show "READY" message
+console.log();
+if (isUpgrade) {
+  console.log('\x1b[33m╔════════════════════════════════════════════╗\x1b[0m');
+  console.log('\x1b[33m║                                            ║\x1b[0m');
+  console.log('\x1b[33m║\x1b[0m           \x1b[33;1mREADY TO UPDATE\x1b[0m                  \x1b[33m║\x1b[0m');
+  console.log('\x1b[33m║                                            ║\x1b[0m');
+  console.log('\x1b[33m║\x1b[0m   \x1b[36mPress ENTER to launch Claude and\x1b[0m         \x1b[33m║\x1b[0m');
+  console.log('\x1b[33m║\x1b[0m   \x1b[36mauto-run /autoconfig-update\x1b[0m              \x1b[33m║\x1b[0m');
+  console.log('\x1b[33m║                                            ║\x1b[0m');
+  console.log('\x1b[33m╚════════════════════════════════════════════╝\x1b[0m');
+} else {
+  console.log('\x1b[33m╔════════════════════════════════════════════╗\x1b[0m');
+  console.log('\x1b[33m║                                            ║\x1b[0m');
+  console.log('\x1b[33m║\x1b[0m           \x1b[33;1mREADY TO CONFIGURE\x1b[0m               \x1b[33m║\x1b[0m');
+  console.log('\x1b[33m║                                            ║\x1b[0m');
+  console.log('\x1b[33m║\x1b[0m   \x1b[36mPress ENTER to launch Claude and\x1b[0m         \x1b[33m║\x1b[0m');
+  console.log('\x1b[33m║\x1b[0m   \x1b[36mauto-run /autoconfig\x1b[0m                     \x1b[33m║\x1b[0m');
+  console.log('\x1b[33m║                                            ║\x1b[0m');
+  console.log('\x1b[33m╚════════════════════════════════════════════╝\x1b[0m');
+}
+// Show what changed on the upgrade path so a re-run never looks like "nothing came down":
+// grouped features/fixes since the installed version, or a single confirmation line when
+// already on the latest. Rendered here so it lands right before the ENTER prompt.
+// Logic lives in update-summary.js (pure + unit-tested).
+if (isUpgrade) {
+  const changelogPath = path.join(packageDir, 'CHANGELOG.md');
+  const changelogText = fs.existsSync(changelogPath) ? fs.readFileSync(changelogPath, 'utf8') : '';
+  console.log();
+  for (const seg of formatUpdateSummary(previousVersion, currentVersion, changelogText)) {
+    if (seg.kind === 'latest')       console.log(`\x1b[32m  ✓ ${seg.text}\x1b[0m`);
+    else if (seg.kind === 'heading') console.log(`\x1b[36m  ${seg.text}\x1b[0m`);
+    else if (seg.kind === 'group')   console.log(`\x1b[33m    ${seg.text}:\x1b[0m`);
+    else if (seg.kind === 'item')    console.log(`\x1b[90m      • ${seg.text}\x1b[0m`);
+    else if (seg.kind === 'more')    console.log(`\x1b[90m    ${seg.text}\x1b[0m`);
+  }
+  console.log();
+}
+if (!isUpgrade) {
+  console.log('\x1b[90m%s\x1b[0m', "You'll need to approve a few file prompts to complete the installation.");
+  console.log();
+}
+
+// Step 5: Wait for Enter, then launch Claude Code
+const rl = readline.createInterface({
+  input: process.stdin,
+  output: process.stdout
+});
+
+rl.question('\x1b[90mPress ENTER to continue...\x1b[0m', () => {
+  rl.close();
+
+  console.log();
+  console.log('\x1b[36m%s\x1b[0m', `🚀 Launching Claude Code with ${launchCommand}...`);
+  console.log();
+  console.log('\x1b[90m%s\x1b[0m', '   Heads up: Claude Code can take 30+ seconds to initialize.');
+  console.log('\x1b[90m%s\x1b[0m', '   Please be patient while it loads.');
+  console.log();
+
+  // Spawn claude with the appropriate command
+  const claude = spawn('claude', [launchCommand], {
+    cwd: cwd,
+    stdio: 'inherit',
+    shell: true
+  });
+
+  claude.on('error', (err) => {
+    console.log('\x1b[31m%s\x1b[0m', '❌ Failed to launch Claude Code');
+    console.log(`   Run "claude" manually, then run ${launchCommand}`);
+  });
+
+  // Cleanup when Claude exits
+  claude.on('close', () => {
+    cleanupNulFile();
+  });
+});