claude-brain 0.28.2 → 0.28.3

package/VERSION

@@ -1 +1 @@
-0.28.2
+0.28.3

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "claude-brain",
-  "version": "0.28.2",
+  "version": "0.28.3",
   "description": "Local development assistant bridging Obsidian vaults with Claude Code via MCP",
   "type": "module",
   "main": "src/index.ts",

package/src/cli/commands/serve.ts

@@ -27,6 +27,13 @@ export async function runServe() {
   // - otherwise → secondary if primary is already running (Claude Code MCP session)
   const pidManager = new ServerPidManager()
   const existingPid = pidManager.getRunningPid()
+
+  // Prevent duplicate --http-only processes
+  if (httpOnly && existingPid) {
+    console.error(`[claude-brain] Primary instance already running (PID ${existingPid}). Exiting.`)
+    process.exit(0)
+  }
+
   const isSecondaryInstance = !httpOnly && !!existingPid
 
   if (!isSecondaryInstance) {

package/src/config/loader.ts

@@ -148,7 +148,7 @@ export async function loadConfig(basePath: string = process.cwd()): Promise<Conf
   const fileConfig = loadFromFile(basePath)
   const envConfig = loadFromEnv()
 
-  const merged = mergeConfigs(defaultConfig as Partial<Config>, fileConfig, envConfig)
+  const merged = mergeConfigs(defaultConfig as Partial<Config>, envConfig, fileConfig)
 
   const result = ConfigSchema.safeParse(merged)
 
@@ -163,9 +163,14 @@ export async function loadConfig(basePath: string = process.cwd()): Promise<Conf
   const data = result.data
   data.logFilePath = resolveHomePath(data.logFilePath)
   data.dbPath = resolveHomePath(data.dbPath)
-  if (data.knowledge?.graph?.persistPath) {
-    data.knowledge.graph.persistPath = resolveHomePath(data.knowledge.graph.persistPath)
-  }
+
+  // Always resolve knowledge graph path to absolute
+  // Zod .default({}) on nested objects means graph/persistPath may not exist
+  if (!data.knowledge) data.knowledge = {} as any
+  if (!data.knowledge.graph) data.knowledge.graph = {} as any
+  data.knowledge.graph.persistPath = resolveHomePath(
+    data.knowledge.graph.persistPath || './data/knowledge-graph.json'
+  )
 
   // Phase 30: Auto-detect vaultPath if not configured
   if (!data.vaultPath) {

package/src/config/schema.ts

@@ -290,7 +290,7 @@ export const ConfigSchema = z.object({
   serverVersion: z.string().regex(/^\d+\.\d+\.\d+$/, 'Version must be semver format').default(pkg.version),
 
   /** Logging level */
-  logLevel: LogLevelSchema.default('info'),
+  logLevel: LogLevelSchema.default('warn'),
 
   /** Path to log file */
   logFilePath: z.string().default('./logs/claude-brain.log'),

package/src/server/services.ts

@@ -178,7 +178,9 @@ export async function initializeServices(config: Config, logger: Logger): Promis
     if (config.knowledge?.graph?.enabled !== false) {
       try {
         const graph = new InMemoryKnowledgeGraph(logger)
-        const graphPersistPath = config.knowledge?.graph?.persistPath || './data/knowledge-graph.json'
+        // Use absolute path from getHomePaths() if persistPath not configured
+        const { getHomePaths: getHomePathsKG } = await import('@/config/home')
+        const graphPersistPath = config.knowledge?.graph?.persistPath || getHomePathsKG().knowledgeGraph
 
         // Load existing graph from disk
         await graph.load(graphPersistPath)
@@ -656,7 +658,9 @@ export async function shutdownServices(): Promise<void> {
   // Save and stop knowledge graph
   if (services.knowledgeGraph) {
     services.knowledgeGraph.graph.stopAutoSave()
-    const persistPath = services.config.knowledge?.graph?.persistPath || './data/knowledge-graph.json'
+    // Use absolute path from getHomePaths() if persistPath not configured
+    const { getHomePaths } = await import('@/config/home')
+    const persistPath = services.config.knowledge?.graph?.persistPath || getHomePaths().knowledgeGraph
     try {
       await services.knowledgeGraph.graph.save(persistPath)
       serviceLogger.info('Knowledge graph saved on shutdown')