claude-all-hands 1.0.2 → 1.0.3

package/.claude/commands/docs-init.md

@@ -0,0 +1,210 @@
+---
+description: Initialize documentation for codebase (full documentation generation)
+argument-hint: [...optional paths] [optional context]
+---
+
+<objective>
+Create comprehensive documentation for the codebase from scratch. Uses taxonomy-based approach with parallel documentation writers. Taxonomist ensures non-overlapping output directories, so writers work directly on the branch without conflicts.
+</objective>
+
+<context>
+Current branch: !`git branch --show-current`
+Base branch: !`envoy git get-base-branch`
+</context>
+
+<main_agent_role>
+Main agent is ORCHESTRATOR ONLY. Do NOT perform any codebase discovery, file analysis, or documentation planning. All discovery work is delegated to the taxonomist agent.
+
+Main agent responsibilities:
+1. Setup branch (create docs branch if on base)
+2. Parse arguments (paths, context)
+3. Verify clean git state
+4. Delegate to taxonomist with raw inputs
+5. Orchestrate writers based on taxonomist output
+6. Handle merging, validation, and PR creation
+</main_agent_role>
+
+<process>
+<step name="setup_branch">
+Check if current branch equals base branch:
+
+**If on base branch:**
+1. Create docs branch: `docs/init-<timestamp>`
+2. Document from fresh docs branch
+
+**If on feature branch:**
+1. Stay on current branch
+2. Document from feature branch state (no branch switching)
+</step>
+
+<step name="parse_arguments">
+Parse $ARGUMENTS:
+- Extract paths (pass to taxonomist as scope)
+- Extract optional user context (pass to taxonomist)
+
+Do NOT run discovery commands - pass raw inputs to taxonomist.
+</step>
+
+<step name="ensure_committed_state">
+Before delegating to taxonomist, verify clean git state:
+
+1. Check for uncommitted changes:
+   ```bash
+   git status --porcelain
+   ```
+
+2. If changes exist:
+   - Use AskUserQuestion: "Uncommitted changes detected. Documentation requires committed state for valid reference hashes."
+   - Options:
+     - "Commit now" - propose message, gate for approval
+     - "Stash and continue" - `git stash`
+     - "Cancel" - abort workflow
+
+3. If "Commit now":
+   - Run `git diff --cached --stat` for context
+   - Propose commit message based on staged changes
+   - Gate for user approval
+   - Execute: `git add -A && git commit -m "<approved message>"`
+
+4. If "Stash and continue":
+   - Execute: `git stash push -m "pre-docs stash"`
+   - Note: remind user to `git stash pop` after docs complete
+
+5. Verify clean state before proceeding:
+   ```bash
+   git status --porcelain
+   ```
+   Must return empty.
+</step>
+
+<step name="delegate_to_taxonomist">
+Delegate to **documentation-taxonomist agent** with init-workflow.
+
+Taxonomist handles ALL discovery: analyzing codebase structure, checking existing docs, identifying products/features, creating directory structure, assigning writers.
+
+**INPUTS:**
+```yaml
+mode: "init"
+scope_paths: [<paths from arguments, or empty for full codebase>]
+user_request: "<optional context from user>"
+feature_branch: "<current_branch>"
+```
+
+**OUTPUTS:**
+```yaml
+success: true
+segments:
+  - domain: "<domain-name>"
+    files: ["<glob-patterns>"]
+    output_path: "docs/<domain>/"
+    depth: "overview" | "detailed" | "comprehensive"
+    notes: "<guidance>"
+```
+</step>
+
+<step name="parallel_writers">
+For each segment from taxonomist, delegate to **documentation-writer agent** in parallel:
+
+**INPUTS (per writer):**
+```yaml
+mode: "write"
+domain: "<segment.domain>"
+files: <segment.files>
+output_path: "<segment.output_path>"
+depth: "<segment.depth>"
+notes: "<segment.notes>"
+```
+
+**OUTPUTS:**
+```yaml
+success: true
+```
+
+Writers work directly on the branch. Taxonomist ensures non-overlapping output directories, so no conflicts occur.
+</step>
+
+<step name="validate_docs">
+Run validation: `envoy docs validate`
+
+If stale/invalid refs found:
+- Present findings to user
+- Delegate single writer with fix-workflow if user approves
+</step>
+
+<step name="commit_documentation">
+Commit any uncommitted documentation changes (e.g., validation fixes):
+
+1. Check for uncommitted changes in docs/:
+   ```bash
+   git status --porcelain docs/
+   ```
+
+2. If changes exist:
+   ```bash
+   git add docs/
+   git commit -m "docs: finalize documentation"
+   ```
+
+3. Track documentation files for reindex:
+   - Get list of all doc files created/modified since branch diverged from base:
+   ```bash
+   git diff --name-only $(git merge-base HEAD <base_branch>)..HEAD -- docs/
+   ```
+   - Store this list for the reindex step
+</step>
+
+<step name="reindex_knowledge">
+Update semantic search index with new documentation:
+
+1. Build file changes JSON from tracked doc files:
+   ```json
+   [
+     {"path": "docs/domain/index.md", "added": true},
+     {"path": "docs/domain/subdomain/index.md", "added": true}
+   ]
+   ```
+   - Use `added: true` for new files
+   - Use `modified: true` for updated files
+
+2. Call reindex:
+   ```bash
+   envoy knowledge reindex-from-changes docs --files '<json_array>'
+   ```
+
+3. If reindex reports missing references:
+   - Log warning but continue (docs may reference code not yet indexed)
+   - These will resolve on next full reindex
+</step>
+
+<step name="create_pr">
+Create PR:
+```bash
+envoy git create-pr --title "docs: initialize codebase documentation" --body "<summary>"
+```
+
+Report completion with PR link.
+</step>
+</process>
+
+<success_criteria>
+- Branch setup complete (docs branch from base OR stay on feature)
+- Taxonomist segmented codebase with non-overlapping output directories
+- Writers created docs in parallel
+- Validation passed
+- Documentation committed
+- Knowledge index updated
+- PR created
+</success_criteria>
+
+<constraints>
+- MUST NOT perform codebase discovery - delegate ALL discovery to taxonomist
+- MUST NOT run envoy docs tree, envoy docs complexity, or envoy knowledge search
+- MUST verify clean git state before documentation (ensure_committed_state step)
+- MUST only create docs branch if already on base branch
+- MUST delegate to taxonomist for all segmentation and discovery
+- MUST run writers in parallel
+- MUST validate before PR
+- MUST commit documentation changes before reindex (reindex reads from disk)
+- MUST reindex knowledge base after documentation committed
+- All delegations MUST follow INPUTS/OUTPUTS format
+</constraints>

package/.claude/commands/plan.md

@@ -13,7 +13,7 @@ Modes:
 </objective>
 
 <context>
-Plan status: !`.claude/envoy/envoy plan check`
+Plan status: !`envoy plan check`
 </context>
 
 <process>
@@ -30,14 +30,14 @@ Parse $ARGUMENTS for mode flags and user prompt:
 
 1. Call `envoy plan check` to get status
 2. **If plan exists (in_progress or completed)**:
-   - Append user prompt: `.claude/envoy/envoy plan append-user-input "<user_prompt>"`
+   - Append user prompt: `envoy plan append-user-input "<user_prompt>"`
    - Delegate to **planner agent**:
      * "Run `envoy plan protocol implementation` and follow the steps. INPUTS: `{ mode: 'quick', workflow_type: 'feature', feature_branch: <current_branch>, plan_status: <status> }`"
    - AskUserQuestion: "Quick plan created. Ready to implement?"
    - If yes: call /continue command
 3. **If no plan exists**:
    - Create branch from user prompt context (infer name)
-   - Append user prompt: `.claude/envoy/envoy plan append-user-input "<user_prompt>"`
+   - Append user prompt: `envoy plan append-user-input "<user_prompt>"`
    - Delegate to **planner agent**:
      * "Run `envoy plan protocol implementation` and follow the steps. INPUTS: `{ mode: 'quick', workflow_type: 'feature', feature_branch: <current_branch> }`"
    - AskUserQuestion: "Quick plan created. Ready to implement?"
@@ -77,7 +77,7 @@ If user chooses "start fresh": create new branch off base, set mode = "create"
 
 <step name="write_user_input">
 Append all gathered context to user_input.md:
-`.claude/envoy/envoy plan append-user-input "<all_gathered_context>"`
+`envoy plan append-user-input "<all_gathered_context>"`
 </step>
 
 <step name="specialist_delegation">
@@ -93,7 +93,7 @@ Append all gathered context to user_input.md:
 </step>
 
 <step name="get_findings">
-Call `.claude/envoy/envoy plan get-findings` to get list of approaches
+Call `envoy plan get-findings` to get list of approaches
 </step>
 
 <step name="research_delegation">
@@ -107,7 +107,7 @@ For each distinct research objective identified from approaches:
 1. Present all clarifying questions from approach documents to user
 2. AskUserQuestion: "Want to redirect specialists with specific requirements? (clears all findings)"
    - If yes: clear findings, return to specialist_delegation step
-3. Call `.claude/envoy/envoy plan block-findings-gate`
+3. Call `envoy plan block-findings-gate`
    - Returns: `{ thoughts, affected_approaches: [{ specialist_name, approach_number }] }`
 4. If affected_approaches exist:
    - Re-delegate to affected specialists with thoughts context

package/.claude/commands/whats-next.md

@@ -7,7 +7,7 @@ Analyze completed plan and generate contextual next-step suggestions. Uses plan
 </objective>
 
 <context>
-Plan status: !`.claude/envoy/envoy plan check`
+Plan status: !`envoy plan check`
 </context>
 
 <process>
@@ -22,7 +22,7 @@ Parse plan check result:
 </step>
 
 <step name="get_context">
-Call `.claude/envoy/envoy plan get-full-plan`
+Call `envoy plan get-full-plan`
 
 Parse returned context:
 - user_input.md: original requirements, anticipated follow-ups, out-of-scope items

package/.claude/envoy/README.md

@@ -5,9 +5,9 @@ CLI for agent-scoped external tool access. Keeps file contents OUT of Claude's c
 ## Usage
 
 ```bash
-.claude/envoy/envoy <group> <command> [args]
-.claude/envoy/envoy --help
-.claude/envoy/envoy <group> --help
+envoy <group> <command> [args]
+envoy --help
+envoy <group> --help
 ```
 
 ## Tools
@@ -69,8 +69,8 @@ These tools read files directly and pass to external LLMs. Claude only receives
 
 ```bash
 # List all commands and API status
-.claude/envoy/envoy info
+envoy info
 
 # Get help for any command
-.claude/envoy/envoy vertex ask --help
+envoy vertex ask --help
 ```

package/.claude/envoy/package-lock.json

@@ -16,6 +16,15 @@
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         "pino": "^10.1.0",
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@@ -911,6 +919,12 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
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+    "node_modules/isexe": {
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+    },
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@@ -1052,7 +1066,6 @@
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@@ -1329,10 +1521,25 @@
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+      "version": "3.25.1",
+      "resolved": "https://registry.npmjs.org/zod-to-json-schema/-/zod-to-json-schema-3.25.1.tgz",
+      "integrity": "sha512-pM/SU9d3YAggzi6MtR4h7ruuQlqKtad8e9S0fmxcMi+ueAK5Korys/aWcV9LIIHTVbj01NdzxcnXSN+O74ZIVA==",
       "license": "ISC",
       "peerDependencies": {
         "zod": "^3.25 || ^4"

package/.claude/envoy/package.json

@@ -16,6 +16,15 @@
     "gray-matter": "^4.0.3",
     "onnxruntime-node": "1.15.1",
     "pino": "^10.1.0",
+    "tree-sitter": "^0.22.1",
+    "tree-sitter-go": "^0.23.0",
+    "tree-sitter-java": "^0.23.0",
+    "tree-sitter-javascript": "^0.23.0",
+    "tree-sitter-python": "^0.23.0",
+    "tree-sitter-ruby": "^0.23.0",
+    "tree-sitter-rust": "^0.23.0",
+    "tree-sitter-swift": "^0.7.1",
+    "tree-sitter-typescript": "^0.23.0",
     "usearch": "^2.21.4",
     "yaml": "^2.3.4",
     "zod": "^3.23.0"