claude-alfred 0.3.1 → 0.3.2

package/dist/{audit-BrTztz4z.mjs → audit-6NSlW0Ut.mjs}

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import { E as require_dist, S as rootDir, m as VALID_SLUG } from "./knowledge-DItYbraO.mjs";
+import { C as rootDir, D as require_dist, h as VALID_SLUG } from "./knowledge-B0fsJ9SI.mjs";
 import { appendFileSync, mkdirSync, readFileSync, readdirSync, renameSync, rmSync, statSync, writeFileSync } from "node:fs";
 import { join } from "node:path";
 //#region src/epic/index.ts

package/dist/cli.mjs

@@ -371,7 +371,7 @@ const main = defineCommand({
 			async run() {
 				const { Store } = await import("./store-CuN3_dWu.mjs");
 				const { Embedder } = await import("./embedder-BRG2Xpr4.mjs");
-				const { serveMCP } = await import("./server-23A-5yhs.mjs");
+				const { serveMCP } = await import("./server-CHdcikXe.mjs");
 				const store = Store.openDefault();
 				let emb = null;
 				try {
@@ -399,7 +399,7 @@ const main = defineCommand({
 			async run({ args }) {
 				const { Store } = await import("./store-CuN3_dWu.mjs");
 				const { Embedder } = await import("./embedder-BRG2Xpr4.mjs");
-				const { startDashboard } = await import("./server-Dfefx0Gm.mjs");
+				const { startDashboard } = await import("./server-Df8fib2F.mjs");
 				const projectPath = process.cwd();
 				const store = Store.openDefault();
 				let emb = null;
@@ -422,7 +422,7 @@ const main = defineCommand({
 				description: "Event name"
 			} },
 			async run({ args }) {
-				const { runHook } = await import("./dispatcher-xZAhoK7h.mjs").then((n) => n.t);
+				const { runHook } = await import("./dispatcher-BnBtA4bo.mjs").then((n) => n.t);
 				await runHook(args.event);
 			}
 		}),

package/dist/{directives-iFMV2Mmx.mjs → directives-ko2sX5BW.mjs}

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import { n as emitAdditionalContext } from "./dispatcher-xZAhoK7h.mjs";
+import { n as emitAdditionalContext } from "./dispatcher-BnBtA4bo.mjs";
 //#region src/hooks/directives.ts
 const LEVEL_ORDER = {
 	DIRECTIVE: 0,

package/dist/{dispatcher-xZAhoK7h.mjs → dispatcher-BnBtA4bo.mjs}

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import { O as __exportAll } from "./knowledge-DItYbraO.mjs";
+import { k as __exportAll } from "./knowledge-B0fsJ9SI.mjs";
 import { resolve } from "node:path";
 //#region src/hooks/dispatcher.ts
 var dispatcher_exports = /* @__PURE__ */ __exportAll({
@@ -89,27 +89,27 @@ async function runHook(event) {
 	}
 }
 async function handleSessionStart(ev, signal) {
-	const { sessionStart } = await import("./session-start-D177nOGO.mjs");
+	const { sessionStart } = await import("./session-start-dPl4lfZw.mjs");
 	await sessionStart(ev, signal);
 }
 async function handlePreCompact(ev, signal) {
-	const { preCompact } = await import("./pre-compact-CyNPLjSK.mjs");
+	const { preCompact } = await import("./pre-compact-CwvBi5op.mjs");
 	await preCompact(ev, signal);
 }
 async function handleUserPromptSubmit(ev, signal) {
-	const { userPromptSubmit } = await import("./user-prompt-X18njRds.mjs");
+	const { userPromptSubmit } = await import("./user-prompt-o9rlzB2I.mjs");
 	await userPromptSubmit(ev, signal);
 }
 async function handlePostToolUse(ev, signal) {
-	const { postToolUse } = await import("./post-tool-G2PAotAa.mjs");
+	const { postToolUse } = await import("./post-tool-gG8qG5Ee.mjs");
 	await postToolUse(ev, signal);
 }
 async function handlePreToolUse(ev, _signal) {
-	const { preToolUse } = await import("./pre-tool-B_CYjJPV.mjs");
+	const { preToolUse } = await import("./pre-tool-BMCYjtHT.mjs");
 	await preToolUse(ev);
 }
 async function handleStop(ev, _signal) {
-	const { stop } = await import("./stop-uQEMYJUS.mjs");
+	const { stop } = await import("./stop-NL5GdPNy.mjs");
 	await stop(ev);
 }
 //#endregion

package/dist/{fts-CDEAxhSV.mjs → fts-QWdC_4Zv.mjs}

@@ -1,6 +1,6 @@
 #!/usr/bin/env node
-import { c as mapRow, r as getKnowledgeByIDs, u as searchKnowledgeKeyword } from "./knowledge-DItYbraO.mjs";
-import { n as deserializeFloat32, t as cosineSimilarity } from "./vectors-C_Yj-4sR.mjs";
+import { d as searchKnowledgeKeyword, i as getKnowledgeByIDs, l as mapRow } from "./knowledge-B0fsJ9SI.mjs";
+import { n as deserializeFloat32, t as cosineSimilarity } from "./vectors-BDQP0gaa.mjs";
 //#region src/store/fts.ts
 function subTypeHalfLife(subType) {
 	switch (subType) {

package/dist/{helpers-DVDJYnXA.mjs → helpers-BnPVn8Nv.mjs}

@@ -1,7 +1,7 @@
 #!/usr/bin/env node
-import { r as getKnowledgeByIDs, s as incrementHitCount, u as searchKnowledgeKeyword } from "./knowledge-DItYbraO.mjs";
-import { r as vectorSearchKnowledge } from "./vectors-C_Yj-4sR.mjs";
-import { i as subTypeHalfLife, n as searchKnowledgeFTS, r as subTypeBoost } from "./fts-CDEAxhSV.mjs";
+import { c as incrementHitCount, d as searchKnowledgeKeyword, i as getKnowledgeByIDs } from "./knowledge-B0fsJ9SI.mjs";
+import { r as vectorSearchKnowledge } from "./vectors-BDQP0gaa.mjs";
+import { i as subTypeHalfLife, n as searchKnowledgeFTS, r as subTypeBoost } from "./fts-QWdC_4Zv.mjs";
 //#region src/mcp/helpers.ts
 const RECENCY_FLOOR = .5;
 function truncate(s, maxLen) {

package/dist/{knowledge-DItYbraO.mjs → knowledge-B0fsJ9SI.mjs}

@@ -6753,7 +6753,7 @@ function readActiveState(projectPath) {
 	}
 	try {
 		const state = (0, import_dist.parse)(data);
-		if (state?.primary) return state;
+		if (state?.primary != null || state?.tasks) return state;
 	} catch {}
 	let slug = "", startedAt = "";
 	for (const line of data.split("\n")) {
@@ -6999,6 +6999,20 @@ function getRecentDecisions(store, projectRemote, projectPath, sinceISO, limit)
 		createdAt: r.created_at
 	}));
 }
+function deleteOrphanKnowledge(store, projectRemote, projectPath, branch, validFilePaths) {
+	const rows = store.db.prepare("SELECT id, file_path FROM knowledge_index WHERE project_remote = ? AND project_path = ? AND branch = ?").all(projectRemote, projectPath, branch);
+	let deleted = 0;
+	const delEmbed = store.db.prepare("DELETE FROM embeddings WHERE source = 'knowledge' AND source_id = ?");
+	const delKnowledge = store.db.prepare("DELETE FROM knowledge_index WHERE id = ?");
+	store.db.transaction(() => {
+		for (const row of rows) if (!validFilePaths.has(row.file_path)) {
+			delEmbed.run(row.id);
+			delKnowledge.run(row.id);
+			deleted++;
+		}
+	})();
+	return deleted;
+}
 function countKnowledge(store, projectRemote, projectPath) {
 	return store.db.prepare("SELECT COUNT(*) as cnt FROM knowledge_index WHERE project_remote = ? AND project_path = ? AND enabled = 1").get(projectRemote, projectPath).cnt;
 }
@@ -7028,4 +7042,4 @@ function mapRow(r) {
 	};
 }
 //#endregion
-export { switchActive as C, __commonJSMin as D, require_dist as E, __exportAll as O, rootDir as S, writeActiveState as T, filesForSize as _, getPromotionCandidates as a, removeTask as b, mapRow as c, setKnowledgeEnabled as d, upsertKnowledge as f, detectSize as g, completeTask as h, getKnowledgeStats as i, __toESM as k, promoteSubType as l, VALID_SLUG as m, getKnowledgeByID as n, getRecentDecisions as o, SpecDir as p, getKnowledgeByIDs as r, incrementHitCount as s, countKnowledge as t, searchKnowledgeKeyword as u, readActive as v, verifyReviewFile as w, reviewStatusFor as x, readActiveState as y };
+export { __toESM as A, rootDir as C, require_dist as D, writeActiveState as E, __commonJSMin as O, reviewStatusFor as S, verifyReviewFile as T, detectSize as _, getKnowledgeStats as a, readActiveState as b, incrementHitCount as c, searchKnowledgeKeyword as d, setKnowledgeEnabled as f, completeTask as g, VALID_SLUG as h, getKnowledgeByIDs as i, __exportAll as k, mapRow as l, SpecDir as m, deleteOrphanKnowledge as n, getPromotionCandidates as o, upsertKnowledge as p, getKnowledgeByID as r, getRecentDecisions as s, countKnowledge as t, promoteSubType as u, filesForSize as v, switchActive as w, removeTask as x, readActive as y };

package/dist/{post-tool-G2PAotAa.mjs → post-tool-gG8qG5Ee.mjs}

@@ -1,11 +1,11 @@
 #!/usr/bin/env node
-import { a as getPromotionCandidates, f as upsertKnowledge, l as promoteSubType, p as SpecDir, v as readActive, y as readActiveState } from "./knowledge-DItYbraO.mjs";
-import { n as searchKnowledgeFTS, t as detectKnowledgeConflicts } from "./fts-CDEAxhSV.mjs";
+import { b as readActiveState, m as SpecDir, o as getPromotionCandidates, p as upsertKnowledge, u as promoteSubType, y as readActive } from "./knowledge-B0fsJ9SI.mjs";
+import { n as searchKnowledgeFTS, t as detectKnowledgeConflicts } from "./fts-QWdC_4Zv.mjs";
 import { t as detectProject } from "./project-Djp8-Djz.mjs";
-import { i as notifyUser, r as extractSection } from "./dispatcher-xZAhoK7h.mjs";
-import { r as truncate } from "./helpers-DVDJYnXA.mjs";
+import { i as notifyUser, r as extractSection } from "./dispatcher-BnBtA4bo.mjs";
+import { r as truncate } from "./helpers-BnPVn8Nv.mjs";
 import { openDefaultCached } from "./store-CuN3_dWu.mjs";
-import { t as emitDirectives } from "./directives-iFMV2Mmx.mjs";
+import { t as emitDirectives } from "./directives-ko2sX5BW.mjs";
 import { i as writeStateText, n as readStateText } from "./state-CdHO66SV.mjs";
 //#region src/hooks/post-tool.ts
 function readExploreCount(cwd) {

package/dist/{pre-compact-CyNPLjSK.mjs → pre-compact-CwvBi5op.mjs}

@@ -1,8 +1,8 @@
 #!/usr/bin/env node
-import { f as upsertKnowledge, h as completeTask, p as SpecDir, v as readActive, w as verifyReviewFile, x as reviewStatusFor, y as readActiveState } from "./knowledge-DItYbraO.mjs";
-import { s as syncTaskStatus, t as appendAudit } from "./audit-BrTztz4z.mjs";
+import { S as reviewStatusFor, T as verifyReviewFile, b as readActiveState, g as completeTask, m as SpecDir, p as upsertKnowledge, y as readActive } from "./knowledge-B0fsJ9SI.mjs";
+import { s as syncTaskStatus, t as appendAudit } from "./audit-6NSlW0Ut.mjs";
 import { t as detectProject } from "./project-Djp8-Djz.mjs";
-import { i as notifyUser } from "./dispatcher-xZAhoK7h.mjs";
+import { i as notifyUser } from "./dispatcher-BnBtA4bo.mjs";
 import { openDefaultCached } from "./store-CuN3_dWu.mjs";
 import { readFileSync, writeFileSync } from "node:fs";
 import { join } from "node:path";

package/dist/{pre-tool-B_CYjJPV.mjs → pre-tool-BMCYjtHT.mjs}

@@ -1,6 +1,6 @@
 #!/usr/bin/env node
-import "./dispatcher-xZAhoK7h.mjs";
-import { a as isSpecFilePath, o as tryReadActiveSpec, r as denyTool } from "./spec-guard-YaW8olGC.mjs";
+import "./dispatcher-BnBtA4bo.mjs";
+import { a as isSpecFilePath, o as tryReadActiveSpec, r as denyTool } from "./spec-guard-BGwtCxgH.mjs";
 //#region src/hooks/pre-tool.ts
 const BLOCKABLE_TOOLS = new Set(["Edit", "Write"]);
 /**

package/dist/{server-23A-5yhs.mjs → server-CHdcikXe.mjs}

@@ -1,10 +1,10 @@
 #!/usr/bin/env node
-import { C as switchActive, D as __commonJSMin, T as writeActiveState, _ as filesForSize, a as getPromotionCandidates, b as removeTask, f as upsertKnowledge, g as detectSize, h as completeTask, i as getKnowledgeStats, k as __toESM, l as promoteSubType, m as VALID_SLUG, n as getKnowledgeByID, p as SpecDir, r as getKnowledgeByIDs, v as readActive, w as verifyReviewFile, x as reviewStatusFor, y as readActiveState } from "./knowledge-DItYbraO.mjs";
-import { a as nextActionable, c as topologicalOrder, i as listAllEpics, l as unlinkTaskFromAllEpics, n as EpicDir, o as removeEpic, r as initEpic, s as syncTaskStatus, t as appendAudit } from "./audit-BrTztz4z.mjs";
-import { r as vectorSearchKnowledge } from "./vectors-C_Yj-4sR.mjs";
-import { n as searchKnowledgeFTS, r as subTypeBoost, t as detectKnowledgeConflicts } from "./fts-CDEAxhSV.mjs";
+import { A as __toESM, E as writeActiveState, O as __commonJSMin, S as reviewStatusFor, T as verifyReviewFile, _ as detectSize, a as getKnowledgeStats, b as readActiveState, g as completeTask, h as VALID_SLUG, i as getKnowledgeByIDs, m as SpecDir, o as getPromotionCandidates, p as upsertKnowledge, r as getKnowledgeByID, u as promoteSubType, v as filesForSize, w as switchActive, x as removeTask, y as readActive } from "./knowledge-B0fsJ9SI.mjs";
+import { a as nextActionable, c as topologicalOrder, i as listAllEpics, l as unlinkTaskFromAllEpics, n as EpicDir, o as removeEpic, r as initEpic, s as syncTaskStatus, t as appendAudit } from "./audit-6NSlW0Ut.mjs";
+import { r as vectorSearchKnowledge } from "./vectors-BDQP0gaa.mjs";
+import { n as searchKnowledgeFTS, r as subTypeBoost, t as detectKnowledgeConflicts } from "./fts-QWdC_4Zv.mjs";
 import { t as detectProject } from "./project-Djp8-Djz.mjs";
-import { n as trackHitCounts, r as truncate, t as searchPipeline } from "./helpers-DVDJYnXA.mjs";
+import { n as trackHitCounts, r as truncate, t as searchPipeline } from "./helpers-BnPVn8Nv.mjs";
 import { existsSync, mkdirSync, readFileSync, readdirSync, renameSync, rmSync, unlinkSync, writeFileSync } from "node:fs";
 import { join, resolve } from "node:path";
 import { createHash } from "node:crypto";
@@ -18586,7 +18586,7 @@ async function ledgerSave(store, emb, params) {
 		const model = emb.model;
 		const embText = `${params.title} ${params.context_text ?? ""} ${params.decision ?? params.pattern ?? params.text ?? ""}`;
 		emb.embedForStorage(embText).then(async (vec) => {
-			const { insertEmbedding } = await import("./vectors-C_Yj-4sR.mjs").then((n) => n.i);
+			const { insertEmbedding } = await import("./vectors-BDQP0gaa.mjs").then((n) => n.i);
 			insertEmbedding(store, "knowledge", dbId, model, vec);
 		}).catch((err) => {
 			console.error(`[alfred] embedding failed for ${dbId}: ${err}`);

package/dist/{server-Dfefx0Gm.mjs → server-Df8fib2F.mjs}

@@ -1,7 +1,7 @@
 #!/usr/bin/env node
-import { T as writeActiveState, _ as filesForSize, d as setKnowledgeEnabled, h as completeTask, i as getKnowledgeStats, m as VALID_SLUG, p as SpecDir, w as verifyReviewFile, y as readActiveState } from "./knowledge-DItYbraO.mjs";
-import { i as listAllEpics, t as appendAudit } from "./audit-BrTztz4z.mjs";
-import { n as searchKnowledgeFTS } from "./fts-CDEAxhSV.mjs";
+import { E as writeActiveState, T as verifyReviewFile, a as getKnowledgeStats, b as readActiveState, f as setKnowledgeEnabled, g as completeTask, h as VALID_SLUG, m as SpecDir, v as filesForSize } from "./knowledge-B0fsJ9SI.mjs";
+import { i as listAllEpics, t as appendAudit } from "./audit-6NSlW0Ut.mjs";
+import { n as searchKnowledgeFTS } from "./fts-QWdC_4Zv.mjs";
 import { t as detectProject } from "./project-Djp8-Djz.mjs";
 import { existsSync, mkdirSync, readFileSync, readdirSync, statSync, writeFileSync } from "node:fs";
 import { join } from "node:path";
@@ -2424,6 +2424,59 @@ function toKnowledgeEntry(r) {
 function createApp(projectPath, store, _emb, version) {
 	const app = new Hono();
 	const proj = detectProject(projectPath);
+	function enrichTask(task, projPath, projectName) {
+		const detail = {
+			...task,
+			project_name: projectName
+		};
+		const sd = new SpecDir(projPath, task.slug);
+		try {
+			const lines = sd.readFile("session.md").split("\n");
+			let inFocus = false;
+			for (const line of lines) {
+				if (line.startsWith("## Currently Working On")) {
+					inFocus = true;
+					continue;
+				}
+				if (inFocus) {
+					if (line.startsWith("## ")) break;
+					const trimmed = line.trim();
+					if (trimmed && !trimmed.startsWith("<!--")) {
+						detail.focus = trimmed;
+						break;
+					}
+				}
+			}
+			let inNextSteps = false;
+			const stepLines = [];
+			for (const line of lines) {
+				if (line.startsWith("## Next Steps")) {
+					inNextSteps = true;
+					continue;
+				}
+				if (inNextSteps) {
+					if (line.startsWith("## ")) break;
+					if (line.match(/^- \[[ x]\] /)) stepLines.push(line);
+				}
+			}
+			if (stepLines.length > 0) {
+				const nextSteps = stepLines.map((s) => ({
+					text: s.replace(/^- \[[ x]\] /, ""),
+					done: s.startsWith("- [x]")
+				}));
+				detail.next_steps = nextSteps;
+				detail.completed = nextSteps.filter((s) => s.done).length;
+				detail.total = nextSteps.length;
+			} else {
+				detail.completed = 0;
+				detail.total = 0;
+			}
+		} catch {
+			detail.completed = 0;
+			detail.total = 0;
+		}
+		return detail;
+	}
 	app.get("/api/version", (c) => c.json({ version }));
 	app.get("/api/project", (c) => c.json({
 		path: projectPath,
@@ -2432,62 +2485,27 @@ function createApp(projectPath, store, _emb, version) {
 	app.get("/api/tasks", (c) => {
 		try {
 			const state = readActiveState(projectPath);
-			const enriched = state.tasks.map((task) => {
-				const detail = {
-					...task,
-					project_name: proj.name
-				};
-				const sd = new SpecDir(projectPath, task.slug);
-				try {
-					const lines = sd.readFile("session.md").split("\n");
-					let inFocus = false;
-					for (const line of lines) {
-						if (line.startsWith("## Currently Working On")) {
-							inFocus = true;
-							continue;
-						}
-						if (inFocus) {
-							if (line.startsWith("## ")) break;
-							const trimmed = line.trim();
-							if (trimmed && !trimmed.startsWith("<!--")) {
-								detail.focus = trimmed;
-								break;
-							}
-						}
-					}
-					let inNextSteps = false;
-					const stepLines = [];
-					for (const line of lines) {
-						if (line.startsWith("## Next Steps")) {
-							inNextSteps = true;
-							continue;
-						}
-						if (inNextSteps) {
-							if (line.startsWith("## ")) break;
-							if (line.match(/^- \[[ x]\] /)) stepLines.push(line);
-						}
-					}
-					if (stepLines.length > 0) {
-						const nextSteps = stepLines.map((s) => ({
-							text: s.replace(/^- \[[ x]\] /, ""),
-							done: s.startsWith("- [x]")
-						}));
-						detail.next_steps = nextSteps;
-						detail.completed = nextSteps.filter((s) => s.done).length;
-						detail.total = nextSteps.length;
-					} else {
-						detail.completed = 0;
-						detail.total = 0;
+			const enriched = state.tasks.map((task) => enrichTask(task, projectPath, proj.name));
+			const specsDir = join(projectPath, ".alfred", "specs");
+			const activeSlugs = new Set(state.tasks.map((t) => t.slug));
+			let archived = [];
+			try {
+				archived = readdirSync(specsDir).filter((d) => {
+					if (d.startsWith("_") || !VALID_SLUG.test(d) || activeSlugs.has(d)) return false;
+					try {
+						return statSync(join(specsDir, d)).isDirectory();
+					} catch {
+						return false;
 					}
-				} catch {
-					detail.completed = 0;
-					detail.total = 0;
-				}
-				return detail;
-			});
+				}).map((slug) => enrichTask({
+					slug,
+					status: "completed",
+					started_at: ""
+				}, projectPath, proj.name));
+			} catch {}
 			return c.json({
 				active: state.primary,
-				tasks: enriched,
+				tasks: [...enriched, ...archived],
 				project_name: proj.name
 			});
 		} catch {
@@ -2562,7 +2580,7 @@ function createApp(projectPath, store, _emb, version) {
       SELECT id, file_path, content_hash, title, content, sub_type,
              project_remote, project_path, project_name, branch,
              created_at, updated_at, hit_count, last_accessed, enabled
-      FROM knowledge_index ORDER BY updated_at DESC LIMIT ?
+      FROM knowledge_index WHERE enabled = 1 ORDER BY updated_at DESC LIMIT ?
     `).all(limit).map((r) => ({
 			id: r.id,
 			label: r.title,

package/dist/{session-start-D177nOGO.mjs → session-start-dPl4lfZw.mjs}

@@ -1,10 +1,10 @@
 #!/usr/bin/env node
-import { f as upsertKnowledge, o as getRecentDecisions, p as SpecDir, t as countKnowledge, v as readActive, y as readActiveState } from "./knowledge-DItYbraO.mjs";
+import { b as readActiveState, m as SpecDir, n as deleteOrphanKnowledge, p as upsertKnowledge, s as getRecentDecisions, t as countKnowledge, y as readActive } from "./knowledge-B0fsJ9SI.mjs";
 import { t as detectProject } from "./project-Djp8-Djz.mjs";
-import { i as notifyUser, r as extractSection } from "./dispatcher-xZAhoK7h.mjs";
-import { r as truncate } from "./helpers-DVDJYnXA.mjs";
+import { i as notifyUser, r as extractSection } from "./dispatcher-BnBtA4bo.mjs";
+import { r as truncate } from "./helpers-BnPVn8Nv.mjs";
 import { openDefaultCached } from "./store-CuN3_dWu.mjs";
-import { t as emitDirectives } from "./directives-iFMV2Mmx.mjs";
+import { t as emitDirectives } from "./directives-ko2sX5BW.mjs";
 import { existsSync, readFileSync, readdirSync } from "node:fs";
 import { join } from "node:path";
 //#region src/hooks/session-start.ts
@@ -36,6 +36,7 @@ function syncKnowledgeIndex(store, projectPath) {
 	const knowledgeDir = join(projectPath, ".alfred", "knowledge");
 	const proj = detectProject(projectPath);
 	let synced = 0;
+	const validFilePaths = /* @__PURE__ */ new Set();
 	for (const typeDir of [
 		"decisions",
 		"patterns",
@@ -52,6 +53,7 @@ function syncKnowledgeIndex(store, projectPath) {
 			const raw = readFileSync(join(dir, file), "utf-8");
 			const entry = JSON.parse(raw);
 			const filePath = `${typeDir}/${file}`;
+			validFilePaths.add(filePath);
 			const subType = typeDir === "decisions" ? "decision" : typeDir === "patterns" ? "pattern" : "rule";
 			const { changed } = upsertKnowledge(store, {
 				id: 0,
@@ -76,6 +78,7 @@ function syncKnowledgeIndex(store, projectPath) {
 	try {
 		const mdFiles = readdirSync(knowledgeDir).filter((f) => f.endsWith(".md"));
 		for (const file of mdFiles) try {
+			validFilePaths.add(file);
 			const { frontmatter, body } = parseFrontmatter(readFileSync(join(knowledgeDir, file), "utf-8"));
 			const { changed } = upsertKnowledge(store, {
 				id: 0,
@@ -97,6 +100,12 @@ function syncKnowledgeIndex(store, projectPath) {
 			if (changed) synced++;
 		} catch {}
 	} catch {}
+	try {
+		const deleted = deleteOrphanKnowledge(store, proj.remote, proj.path, proj.branch, validFilePaths);
+		if (deleted > 0) notifyUser("cleaned %d orphan knowledge entries from index", deleted);
+	} catch (err) {
+		notifyUser("warning: orphan knowledge cleanup failed: %s", err);
+	}
 	if (synced > 0) notifyUser("synced %d knowledge files to index", synced);
 }
 function parseFrontmatter(content) {

package/dist/{spec-guard-YaW8olGC.mjs → spec-guard-BGwtCxgH.mjs}

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import { r as extractSection } from "./dispatcher-xZAhoK7h.mjs";
+import { r as extractSection } from "./dispatcher-BnBtA4bo.mjs";
 import { readFileSync } from "node:fs";
 import { join, resolve } from "node:path";
 //#region src/hooks/spec-guard.ts

package/dist/{stop-uQEMYJUS.mjs → stop-NL5GdPNy.mjs}

@@ -1,6 +1,6 @@
 #!/usr/bin/env node
-import "./dispatcher-xZAhoK7h.mjs";
-import { i as hasUncheckedSelfReview, n as countUncheckedNextSteps, o as tryReadActiveSpec, t as blockStop } from "./spec-guard-YaW8olGC.mjs";
+import "./dispatcher-BnBtA4bo.mjs";
+import { i as hasUncheckedSelfReview, n as countUncheckedNextSteps, o as tryReadActiveSpec, t as blockStop } from "./spec-guard-BGwtCxgH.mjs";
 //#region src/hooks/stop.ts
 /**
 * Stop handler: block Claude from stopping when active spec has incomplete items.

package/dist/{user-prompt-X18njRds.mjs → user-prompt-o9rlzB2I.mjs}

@@ -1,11 +1,11 @@
 #!/usr/bin/env node
-import { y as readActiveState } from "./knowledge-DItYbraO.mjs";
-import { r as subTypeBoost } from "./fts-CDEAxhSV.mjs";
+import { b as readActiveState } from "./knowledge-B0fsJ9SI.mjs";
+import { r as subTypeBoost } from "./fts-QWdC_4Zv.mjs";
 import { Embedder } from "./embedder-BRG2Xpr4.mjs";
-import "./dispatcher-xZAhoK7h.mjs";
-import { n as trackHitCounts, r as truncate, t as searchPipeline } from "./helpers-DVDJYnXA.mjs";
+import "./dispatcher-BnBtA4bo.mjs";
+import { n as trackHitCounts, r as truncate, t as searchPipeline } from "./helpers-BnPVn8Nv.mjs";
 import { openDefaultCached } from "./store-CuN3_dWu.mjs";
-import { t as emitDirectives } from "./directives-iFMV2Mmx.mjs";
+import { t as emitDirectives } from "./directives-ko2sX5BW.mjs";
 import { r as writeStateJSON, t as readStateJSON } from "./state-CdHO66SV.mjs";
 import { existsSync } from "node:fs";
 import { join } from "node:path";

package/dist/{vectors-C_Yj-4sR.mjs → vectors-BDQP0gaa.mjs}

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import { O as __exportAll } from "./knowledge-DItYbraO.mjs";
+import { k as __exportAll } from "./knowledge-B0fsJ9SI.mjs";
 //#region src/store/vectors.ts
 var vectors_exports = /* @__PURE__ */ __exportAll({
 	cosineSimilarity: () => cosineSimilarity,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "claude-alfred",
-  "version": "0.3.1",
+  "version": "0.3.2",
   "type": "module",
   "bin": {
     "alfred": "dist/cli.mjs"

package/web/dist/assets/{activity-BEGGrVcS.js → activity-mXF0VmCt.js}

@@ -1 +1 @@
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