circle-ir-ai 2.7.3 → 2.7.5

package/CHANGELOG.md

@@ -5,6 +5,99 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [2.7.5] - 2026-05-16
+
+### Fixed
+
+- **#53: `scan` / `quality` / `generate-spec` / `dead-code` hang
+  on pathological files in large repos.** Tree-sitter parses are
+  SYNCHRONOUS inside the WASM module — pathological inputs
+  (auto-generated TS type defs, vendored module loaders, large
+  integration-test fixtures, deeply nested const initializers)
+  wedge the JS event loop entirely. That defeats Promise-based
+  `withTimeout()` because the setTimeout callback can't fire while
+  the loop is blocked. Can't kill a wedged parse without
+  `worker_threads` (real fix, larger scope).
+
+  **Mitigation:** new shared `src/utils/file-skip.ts` with
+  `preFlightSkip(filePath)` — three caps refuse pathological
+  inputs before they reach the parser:
+  1. File size > `MAX_FILE_BYTES` (default 1 000 000)
+  2. Longest line > `MAX_LINE_LENGTH` (default 50 000)
+  3. Total lines > `MAX_FILE_LINES` (default 50 000) — new for #53
+
+  Wired into all four file-walker paths the user reported:
+  - `security-scan/scanner.ts` (was inline; now uses the helper)
+  - `dead-code/detector.ts` (new)
+  - `specifica/generator.ts` (new — closes the generate-spec hang)
+  - `health-score/calculator.ts` (new — closes the quality hang)
+
+  All three caps overridable via env vars for advanced users.
+  Verified on a 60 000-line synthetic JS file: scan / quality
+  both proceed past the file with `[SKIP] ... too many lines
+  (60001 > 50000; likely auto-generated)` instead of wedging.
+
+### Added
+
+- `src/utils/file-skip.ts` — shared `preFlightSkip()` helper
+  consolidating the parser-pathology heuristics that previously
+  lived inline in scanner.ts only.
+
+## [2.7.4] - 2026-05-16
+
+### Fixed
+
+- **#46: `dead-code` `deadMethods` could exceed `totalMethods`.**
+  The counts were measured from two different populations:
+  `totalMethods` summed `ir.types[].methods.length` (narrow — only
+  methods attached to a parsed type), but `deadMethods` iterated
+  `this.methodMap` which is broader: it includes module-level
+  functions (via synthetic `<module>` wrappers in Python/JS),
+  inner classes, lambdas, and other callable units the call-graph
+  tracks. A wider numerator over a narrower denominator could
+  exceed it, producing nonsense reports like `29 / 25`.
+
+  Fix: `totalMethods = this.methodMap.size` — same population as
+  the dead-method iterator. The invariant `deadMethods ≤
+  totalMethods` now holds by construction.
+
+- **#50: `scan` results were identical across different LLM models
+  due to a path-only cache key.** `FileCache.computeHash(content)`
+  hashed only content. Switching `--llm-model qwen-coder-7b →
+  llama3-3b` against the same repo returned bit-for-bit identical
+  results — the cache cheerfully served the first model's output
+  to the second model's run.
+
+  Fix: `computeHash(content, scope?)` mixes an optional scope into
+  the hash. `FileCache.get/set/has` accept the new `scope`
+  parameter. `mastra/swarm.ts` passes the enrichment model name as
+  scope, so different models get separate cache entries; both can
+  coexist (no eviction). The optional argument keeps callers that
+  don't pass scope on the previous unscoped behavior.
+
+- **#51: OpenAI `*-pro` models (`gpt-5.4-pro`, `gpt-5.5-pro`, etc.)
+  caused a wasted retry budget.** Pro models are completions-only —
+  the `/v1/chat/completions` endpoint returns HTTP 404 with `"This
+  is not a chat model"`. The retry loop kept pounding the same 404
+  until the consecutive-failure breaker tripped (5 calls).
+
+  Fix: pre-flight refusal. If the model name (with cognium proxy
+  prefix stripped) ends in `-pro`, trip the breaker immediately
+  and log a one-line guidance:
+
+  ```
+  LLM model 'gpt-5.4-pro' is not a chat-completions model
+  (OpenAI rejects */chat/completions for *-pro variants). Use a
+  chat-capable model — gpt-5-nano, gpt-4o-mini, gpt-4o, or
+  claude-*-latest. Falling back to static analysis. Use --no-llm
+  to silence.
+  ```
+
+### Added
+
+- 6 new tests in `tests/file-cache.test.ts` covering the cache
+  scope behavior from #50 and the atomic-write invariant from #31.
+
 ## [2.7.3] - 2026-05-16
 
 ### Fixed

package/dist/agents/mastra/swarm.d.ts.map

@@ -1 +1 @@
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package/dist/agents/mastra/swarm.js

@@ -187,6 +187,13 @@ export async function analyzeFilesSwarm(files, options) {
     const concurrency = opts.maxConcurrency || 10;
     const cache = opts.cache;
     const cacheEnabled = opts.cacheEnabled && cache?.isEnabled();
+    // #50: cache scope = LLM model so switching models doesn't return
+    // stale results from a previous run. Same model → same cache key →
+    // hit. Different model → different key → fresh analysis. The cache
+    // benefits both models independently (no eviction).
+    const cacheScope = opts.llmConfig?.phases?.enrichment?.model
+        ?? process.env.LLM_ENRICHMENT_MODEL
+        ?? 'default';
     let cacheHits = 0;
     let cacheMisses = 0;
     // Streaming stats (tracked even in memory-efficient mode)
@@ -236,9 +243,10 @@ export async function analyzeFilesSwarm(files, options) {
         // Note: We load content here for cache key, but memory is still bounded
         // by concurrency since only 'concurrency' files are in-flight at once
         const content = await resolveFileContent(file);
-        // Check cache first
+        // Check cache first. #50: scope by LLM model so we don't return
+        // qwen-coder's results to a llama3.2 run.
         if (cacheEnabled && cache) {
-            const cached = cache.get(file.path, content);
+            const cached = cache.get(file.path, content, cacheScope);
             if (cached) {
                 cacheHits++;
                 result = cached;
@@ -249,7 +257,7 @@ export async function analyzeFilesSwarm(files, options) {
                 result = await analyzeFileWithErrorHandling({ path: file.path, content }, opts);
                 // Store in cache (only if no error)
                 if (!result.error) {
-                    cache.set(file.path, content, result);
+                    cache.set(file.path, content, result, cacheScope);
                 }
             }
         }

package/dist/agents/mastra/swarm.js.map

@@ -1 +1 @@
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package/dist/cache/file-cache.d.ts

@@ -30,6 +30,13 @@ export declare class FileCache<T = unknown> {
     /**
      * Compute SHA-256 hash of content
      */
+    /**
+     * Compute the cache hash key. #50: when `scope` is provided it's mixed
+     * into the hash — same content + different LLM model produces a
+     * different cache entry, so switching models no longer returns stale
+     * results from a previous model. Callers should pass scope = model
+     * name (or any other config that affects the analysis output).
+     */
     private computeHash;
     /**
      * Get cache file path for a given content hash
@@ -51,20 +58,23 @@ export declare class FileCache<T = unknown> {
      * Get cached result for content
      * @param filePath File path (used for logging, not cache key)
      * @param content File content (used for cache key via hash)
+     * @param scope Optional cache scope (e.g. LLM model name) — different
+     *              scopes get separate cache entries. #50.
      * @returns Cached result or null if not found/invalid
      */
-    get(filePath: string, content: string): T | null;
+    get(filePath: string, content: string, scope?: string): T | null;
     /**
      * Store result in cache
      * @param filePath File path (used for logging, not cache key)
      * @param content File content (used for cache key via hash)
      * @param result Analysis result to cache
+     * @param scope Optional cache scope (must match `get()` scope). #50.
      */
-    set(filePath: string, content: string, result: T): void;
+    set(filePath: string, content: string, result: T, scope?: string): void;
     /**
      * Check if content is cached (without retrieving the result)
      */
-    has(filePath: string, content: string): boolean;
+    has(filePath: string, content: string, scope?: string): boolean;
     /**
      * Clear all cached entries
      */

package/dist/cache/file-cache.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"file-cache.d.ts","sourceRoot":"","sources":["../../src/cache/file-cache.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAiBH,MAAM,WAAW,UAAU,CAAC,CAAC;IAC3B,WAAW,EAAE,MAAM,CAAC;IACpB,eAAe,EAAE,MAAM,CAAC;IACxB,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,CAAC,CAAC;CACX;AAED,MAAM,WAAW,gBAAgB;IAC/B,uEAAuE;IACvE,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,qEAAqE;IACrE,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,kDAAkD;IAClD,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAID,qBAAa,SAAS,CAAC,CAAC,GAAG,OAAO;IAChC,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,MAAM,CAAS;IACvB,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,WAAW,CAAyC;gBAEhD,OAAO,GAAE,gBAAqB;IAU1C;;OAEG;IACH,OAAO,CAAC,WAAW;IAInB;;OAEG;IACH,OAAO,CAAC,YAAY;IAMpB;;OAEG;IACH,OAAO,CAAC,cAAc;IAMtB;;OAEG;IACH,OAAO,CAAC,YAAY;IAepB;;OAEG;IACH,SAAS,IAAI,OAAO;IAIpB;;;;;OAKG;IACH,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,CAAC,GAAG,IAAI;IAkChD;;;;;OAKG;IACH,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,IAAI;IAoCvD;;OAEG;IACH,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO;IAI/C;;OAEG;IACH,KAAK,IAAI,IAAI;IAab;;OAEG;IACH,KAAK,IAAI;QAAE,aAAa,EAAE,MAAM,CAAC;QAAC,WAAW,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE;CAmB1E;AAKD;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,CAAC,EAAE,gBAAgB,GAAG,SAAS,CAKtE;AAED;;GAEG;AACH,wBAAgB,kBAAkB,IAAI,IAAI,CAEzC"}
+{"version":3,"file":"file-cache.d.ts","sourceRoot":"","sources":["../../src/cache/file-cache.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAiBH,MAAM,WAAW,UAAU,CAAC,CAAC;IAC3B,WAAW,EAAE,MAAM,CAAC;IACpB,eAAe,EAAE,MAAM,CAAC;IACxB,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,CAAC,CAAC;CACX;AAED,MAAM,WAAW,gBAAgB;IAC/B,uEAAuE;IACvE,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,qEAAqE;IACrE,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,kDAAkD;IAClD,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAID,qBAAa,SAAS,CAAC,CAAC,GAAG,OAAO;IAChC,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,MAAM,CAAS;IACvB,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,WAAW,CAAyC;gBAEhD,OAAO,GAAE,gBAAqB;IAU1C;;OAEG;IACH;;;;;;OAMG;IACH,OAAO,CAAC,WAAW;IAMnB;;OAEG;IACH,OAAO,CAAC,YAAY;IAMpB;;OAEG;IACH,OAAO,CAAC,cAAc;IAMtB;;OAEG;IACH,OAAO,CAAC,YAAY;IAepB;;OAEG;IACH,SAAS,IAAI,OAAO;IAIpB;;;;;;;OAOG;IACH,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,CAAC,GAAG,IAAI;IAkChE;;;;;;OAMG;IACH,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI;IAoCvE;;OAEG;IACH,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,OAAO;IAI/D;;OAEG;IACH,KAAK,IAAI,IAAI;IAab;;OAEG;IACH,KAAK,IAAI;QAAE,aAAa,EAAE,MAAM,CAAC;QAAC,WAAW,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE;CAmB1E;AAKD;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,CAAC,EAAE,gBAAgB,GAAG,SAAS,CAKtE;AAED;;GAEG;AACH,wBAAgB,kBAAkB,IAAI,IAAI,CAEzC"}

package/dist/cache/file-cache.js

@@ -38,8 +38,18 @@ export class FileCache {
     /**
      * Compute SHA-256 hash of content
      */
-    computeHash(content) {
-        return crypto.createHash('sha256').update(content).digest('hex');
+    /**
+     * Compute the cache hash key. #50: when `scope` is provided it's mixed
+     * into the hash — same content + different LLM model produces a
+     * different cache entry, so switching models no longer returns stale
+     * results from a previous model. Callers should pass scope = model
+     * name (or any other config that affects the analysis output).
+     */
+    computeHash(content, scope) {
+        const h = crypto.createHash('sha256').update(content);
+        if (scope)
+            h.update('\0').update(scope);
+        return h.digest('hex');
     }
     /**
      * Get cache file path for a given content hash
@@ -82,12 +92,14 @@ export class FileCache {
      * Get cached result for content
      * @param filePath File path (used for logging, not cache key)
      * @param content File content (used for cache key via hash)
+     * @param scope Optional cache scope (e.g. LLM model name) — different
+     *              scopes get separate cache entries. #50.
      * @returns Cached result or null if not found/invalid
      */
-    get(filePath, content) {
+    get(filePath, content, scope) {
         if (!this.enabled)
             return null;
-        const hash = this.computeHash(content);
+        const hash = this.computeHash(content, scope);
         // Check memory cache first
         const memEntry = this.memoryCache.get(hash);
         if (memEntry && this.isValidEntry(memEntry)) {
@@ -120,11 +132,12 @@ export class FileCache {
      * @param filePath File path (used for logging, not cache key)
      * @param content File content (used for cache key via hash)
      * @param result Analysis result to cache
+     * @param scope Optional cache scope (must match `get()` scope). #50.
      */
-    set(filePath, content, result) {
+    set(filePath, content, result, scope) {
         if (!this.enabled)
             return;
-        const hash = this.computeHash(content);
+        const hash = this.computeHash(content, scope);
         const entry = {
             contentHash: hash,
             circleIrVersion: circleIrVersion || 'unknown',
@@ -159,8 +172,8 @@ export class FileCache {
     /**
      * Check if content is cached (without retrieving the result)
      */
-    has(filePath, content) {
-        return this.get(filePath, content) !== null;
+    has(filePath, content, scope) {
+        return this.get(filePath, content, scope) !== null;
     }
     /**
      * Clear all cached entries

package/dist/cache/file-cache.js.map

@@ -1 +1 @@
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package/dist/dead-code/detector.d.ts.map

@@ -1 +1 @@
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package/dist/dead-code/detector.js

@@ -9,6 +9,7 @@
 import * as fs from 'fs';
 import * as path from 'path';
 import { minimatch } from 'minimatch';
+import { preFlightSkip } from '../utils/file-skip.js';
 import { isAnalyzerInitialized, analyze, } from 'circle-ir';
 import { ensureAnalyzerInitialized } from '../utils/analyzer-init.js';
 // ============================================================================
@@ -203,7 +204,17 @@ export class DeadCodeDetector {
         let processed = 0;
         for (const file of files) {
             try {
-                const content = fs.readFileSync(file, 'utf-8');
+                // #53: pre-flight skip — avoid wedging the synchronous
+                // Tree-sitter parse on pathological inputs.
+                const flight = preFlightSkip(file);
+                if (flight.skip) {
+                    if (this.verbose) {
+                        console.error(`  [SKIP] ${path.basename(file)}: ${flight.reason}`);
+                    }
+                    processed++;
+                    continue;
+                }
+                const content = flight.content;
                 const language = this.detectLanguage(file);
                 const ir = await analyze(content, path.basename(file), language);
                 results.push({
@@ -687,9 +698,17 @@ export class DeadCodeDetector {
      * Generate final result.
      */
     generateResult(files, deadCode, options, startTime) {
-        // Calculate summary
+        // Calculate summary. #46: `totalMethods` must mirror what the
+        // dead-code detector actually tracks. Previously it summed
+        // `ir.types[].methods.length` (narrow — only methods attached to a
+        // parsed type), but `deadMethods` is computed by iterating
+        // `this.methodMap` which includes module-level functions (via
+        // synthetic `<module>` wrappers in Python/JS), inner classes,
+        // lambdas, and other callable units the call-graph tracks. That
+        // asymmetry let `deadMethods` exceed `totalMethods`. Use
+        // `methodMap.size` so the relationship `deadMethods ≤ totalMethods`
+        // is true by construction.
         let totalLOC = 0;
-        let totalMethods = 0;
         let totalClasses = 0;
         let deadLOC = 0;
         for (const { ir, loc } of files) {
@@ -697,9 +716,9 @@ export class DeadCodeDetector {
             for (const type of ir.types) {
                 if (type.kind === 'class')
                     totalClasses++;
-                totalMethods += type.methods.length;
             }
         }
+        const totalMethods = this.methodMap.size;
         const byFile = new Map();
         for (const item of deadCode) {
             deadLOC += item.lineCount;