circle-ir-ai 2.7.10 → 2.7.11

package/CHANGELOG.md

@@ -5,6 +5,61 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [2.7.11] - 2026-05-20
+
+### Fixed
+
+- **#60: `secrets` git history honors `include` / `exclude` globs and
+  built-in skip patterns.** `scanGitHistory` walked every diff regardless
+  of user filters, so `cognium.config.json` `exclude: ['Cargo.lock']`
+  would still produce historical `Status: Historical` findings on lock
+  files. Now the diff parser tracks the current file (`+++ b/<path>`)
+  through both built-in regex skips and user globs; if excluded, every
+  line in that diff section is dropped until the next file marker.
+
+  Also fixes a separate pre-existing bug found while writing the test:
+  `git diff-tree -p <commit>` returns **empty** for the repo's root
+  commit, so any secret committed in commit #1 was invisible to the
+  history scanner. Added `--root` so the root-commit diff against the
+  empty tree is emitted.
+
+- **#58 (part 1): `generate-spec` no longer rejects `--no-llm`.** The
+  command previously printed "Error: generate-spec requires LLM
+  configuration; --no-llm is incompatible" while the ax-client fallback
+  was simultaneously suggesting "Use --no-llm to silence". Now `--no-llm`
+  is accepted with an explicit "STATIC-ONLY specifications" notice, and
+  the engine skips the LLM attempt entirely via a new
+  `SpecificaOptions.skipLLM` field — no network call, no misleading
+  "endpoint unreachable" message.
+
+- **#58 (part 2): cluster name `.` renamed to `root`** in
+  `feature-clustering.ts`. Files at the repo root were grouped under a
+  literal `.` cluster name; replaced with `root` for readability.
+
+- **#59 (part 1): `spec-diff` undocumented-behaviors list truncated.**
+  ZAP repro produced 692 entries flooding the text report. The text
+  formatter (cognium-ai/src/cli/commands/spec-diff.ts) now caps display
+  to the top 50 by severity with a "... and N more" tail. Full list
+  still available via `-f json`. Scoring is unchanged (already capped at
+  30-point penalty by the 2.7.6 #55 fix).
+
+- **#59 (part 2): `spec-diff` matches generate-spec's "prevent CWE-N"
+  requirements** to functions with side effects compatible with that
+  CWE class. Previously the round-trip (generate-spec → spec-diff) was
+  self-inconsistent: generate-spec emitted "System shall prevent CWE-N"
+  MUST requirements from each detected vulnerability, but spec-diff
+  couldn't match them because the token-overlap matcher had no notion of
+  CWE numbers. New CWE_TO_SIDE_EFFECTS map (CWE-22 → filesystem, CWE-78
+  → io, CWE-89 → database, CWE-918 → network, etc.) adds a +0.6
+  confidence bonus when the CWE matches a function's side effect class.
+  Timon repro: 11/23 uncovered MUST requirements drop substantially.
+
+### Added
+
+- `SpecificaOptions.skipLLM` — boolean, default false. When true,
+  `generateSpec` returns the static fallback directly without attempting
+  any LLM call. Used by cognium-ai `generate-spec --no-llm`.
+
 ## [2.7.10] - 2026-05-20
 
 ### Changed

package/README.md

@@ -183,13 +183,13 @@ jobs:
 | OWASP Benchmark (Java, 1415 tests) | **100%** |
 | Juliet Test Suite (243 tests) | **100%** |
 | SecuriBench Micro | 97.7% TPR, 6.7% FPR |
-| CWE-Bench-Java (120 CVEs) | 50.0% static, 81.7% +LLM Discovery |
+| CWE-Bench-Java (120 CVEs) | 50.8% static (61/120), 86.7% +LLM Discovery (Claude Opus) |
 | NodeJS Synthetic (25 tests) | 93.8% TPR |
 | CWE-Bench-Rust (50 tests) | 86.5% TPR, 7.7% FPR |
 | Go Synthetic (29 tests) | 84.2% TPR, 30% FPR |
 | Vulnerability-goapp (13 tests, real-app) | cmdi/xss/pathtraver 100%; sqli precision pending [circle-ir#2](https://github.com/cogniumhq/circle-ir/issues/2) |
 
-CWE-Bench-Java reference: CodeQL 22.5%, IRIS+GPT-4 45.8%.
+CWE-Bench-Java reference (IRIS-paper strict methodology — sink within fix method range): CodeQL 22.5%, IRIS+GPT-4 45.8%.
 
 ### Top 100 Secure Repos (LLM Discovery on 21 production repos, 967K LOC)
 

package/dist/secret-scan/scanner.d.ts

@@ -131,6 +131,21 @@ export declare class SecretScanner {
      * Scan a git diff for secrets
      */
     private scanDiff;
+    /**
+     * Built-in path-skip regexes shared between the working-tree walk
+     * (`getFiles`) and the git-history diff path (`scanDiff`). #60: previously
+     * only the working-tree walk applied these — git-history scans walked
+     * every diff including `Cargo.lock`, `*.lock`, binary blobs, etc.,
+     * producing noisy "Status: Historical" findings on paths the user had
+     * already excluded from their working-tree scan.
+     */
+    private static readonly BUILTIN_EXCLUDE_PATTERNS;
+    /**
+     * #60: returns true when a path should be filtered out per built-in
+     * regex excludes + user-supplied include/exclude minimatch globs.
+     * Used by both the working-tree walk and the git-history diff parser.
+     */
+    private isPathExcluded;
     /**
      * Get list of files to scan
      */

package/dist/secret-scan/scanner.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/secret-scan/scanner.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAMH,OAAO,EAGL,KAAK,aAAa,EAClB,KAAK,cAAc,EACpB,MAAM,eAAe,CAAC;AAEvB;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,wCAAwC;IACxC,QAAQ,CAAC,EAAE,aAAa,EAAE,CAAC;IAC3B,8CAA8C;IAC9C,iBAAiB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC7B,4BAA4B;IAC5B,iBAAiB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC7B,iCAAiC;IACjC,WAAW,CAAC,EAAE,cAAc,CAAC;IAC7B,kCAAkC;IAClC,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,mDAAmD;IACnD,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,sCAAsC;IACtC,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,sCAAsC;IACtC,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,wBAAwB;IACxB,UAAU,CAAC,EAAE,CAAC,QAAQ,EAAE,YAAY,KAAK,IAAI,CAAC;CAC/C;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,UAAU,GAAG,gBAAgB,GAAG,kBAAkB,GAAG,UAAU,CAAC;IACvE,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,8BAA8B;IAC9B,SAAS,EAAE,MAAM,CAAC;IAClB,0BAA0B;IAC1B,WAAW,EAAE,MAAM,CAAC;IACpB,uCAAuC;IACvC,IAAI,EAAE,MAAM,CAAC;IACb,kBAAkB;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,sBAAsB;IACtB,MAAM,EAAE,MAAM,CAAC;IACf,8CAA8C;IAC9C,KAAK,EAAE,MAAM,CAAC;IACd,sCAAsC;IACtC,WAAW,EAAE,MAAM,CAAC;IACpB,qBAAqB;IACrB,QAAQ,EAAE,cAAc,CAAC;IACzB,eAAe;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,4CAA4C;IAC5C,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,uCAAuC;IACvC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,4CAA4C;IAC5C,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,8CAA8C;IAC9C,aAAa,EAAE,OAAO,CAAC;CACxB;AAED;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,iCAAiC;IACjC,SAAS,EAAE,MAAM,CAAC;IAClB,0BAA0B;IAC1B,YAAY,EAAE,MAAM,CAAC;IACrB,gDAAgD;IAChD,cAAc,EAAE,MAAM,CAAC;IACvB,2BAA2B;IAC3B,OAAO,EAAE,cAAc,EAAE,CAAC;IAC1B,0BAA0B;IAC1B,UAAU,EAAE,MAAM,CAAC,cAAc,EAAE,MAAM,CAAC,CAAC;IAC3C,0BAA0B;IAC1B,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACnC,mDAAmD;IACnD,aAAa,EAAE,MAAM,CAAC;IACtB,8BAA8B;IAC9B,iBAAiB,EAAE,MAAM,CAAC;IAC1B,0BAA0B;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,iCAAiC;IACjC,wBAAwB,EAAE,MAAM,EAAE,CAAC;CACpC;AAED;;GAEG;AACH,qBAAa,aAAa;IACxB,OAAO,CAAC,QAAQ,CAAkB;IAClC,OAAO,CAAC,OAAO,CAAoB;gBAEvB,OAAO,GAAE,iBAAsB;IAK3C;;OAEG;IACH,OAAO,CAAC,cAAc;IA2BtB;;OAEG;IACG,IAAI,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,CAAC;IA8FxD;;OAEG;IACG,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC;IAsB7E;;OAEG;IACH,OAAO,CAAC,QAAQ;IA+EhB;;;OAGG;IACH,OAAO,CAAC,oBAAoB;IAiB5B;;OAEG;YACW,cAAc;IA0D5B;;OAEG;IACH,OAAO,CAAC,QAAQ;IA2DhB;;;;;;;OAOG;IACH,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,wBAAwB,CA4B9C;IAEF;;;;OAIG;IACH,OAAO,CAAC,cAAc;IAetB;;OAEG;IACH,OAAO,CAAC,QAAQ;IAgDhB;;OAEG;IACH,OAAO,CAAC,SAAS;IAYjB;;OAEG;IACH,OAAO,CAAC,YAAY;IAYpB;;OAEG;IACH,OAAO,CAAC,YAAY;IAKpB;;OAEG;IACH,OAAO,CAAC,gCAAgC;CAqDzC;AAED;;GAEG;AACH,wBAAsB,cAAc,CAClC,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE,iBAAsB,GAC9B,OAAO,CAAC,gBAAgB,CAAC,CAG3B;AAED;;GAEG;AACH,wBAAsB,eAAe,CACnC,SAAS,EAAE,MAAM,GAChB,OAAO,CAAC,gBAAgB,CAAC,CAK3B;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,gBAAgB,GAAG,MAAM,CAkFnE"}

package/dist/secret-scan/scanner.js

@@ -240,9 +240,14 @@ export class SecretScanner {
                 // Get commit info
                 const commitInfo = execFileSync('git', ['-C', directory, 'log', '-1', '--format=%an|%aI', commit], { encoding: 'utf-8' }).trim();
                 const [author, commitDate] = commitInfo.split('|');
-                // Get diff for this commit
+                // Get diff for this commit.
+                // `--root` is required so the diff against the empty tree is
+                // emitted for the repo's root commit — otherwise `git diff-tree`
+                // returns empty for the initial commit and any secret added in
+                // commit #1 is silently invisible to the scanner. Discovered
+                // while writing the #60 history-exclude test.
                 try {
-                    const diff = execFileSync('git', ['-C', directory, 'diff-tree', '--no-commit-id', '-r', '-p', commit], { encoding: 'utf-8', maxBuffer: 50 * 1024 * 1024 });
+                    const diff = execFileSync('git', ['-C', directory, 'diff-tree', '--root', '--no-commit-id', '-r', '-p', commit], { encoding: 'utf-8', maxBuffer: 50 * 1024 * 1024 });
                     // Parse diff and scan for secrets
                     const diffSecrets = this.scanDiff(diff, commit, author, commitDate);
                     secrets.push(...diffSecrets);
@@ -267,14 +272,25 @@ export class SecretScanner {
         const secrets = [];
         let currentFile = '';
         let lineNum = 0;
+        // #60: when the current file is excluded by user globs or built-in
+        // regex skips, drop every line of that diff section until the next
+        // `+++ b/<path>` marker. Working-tree walk applied excludes; history
+        // walk did not, so e.g. Cargo.lock secrets would show up as
+        // "Status: Historical" even with `--exclude Cargo.lock`.
+        let currentFileExcluded = false;
         const lines = diff.split('\n');
         for (const line of lines) {
             // Track current file
             if (line.startsWith('+++ b/')) {
                 currentFile = line.slice(6);
                 lineNum = 0;
+                currentFileExcluded = this.isPathExcluded(currentFile);
                 continue;
             }
+            // #60: while the active file is excluded, skip every line —
+            // including hunk headers — until the next `+++ b/` marker.
+            if (currentFileExcluded)
+                continue;
             // Track line numbers from hunk headers
             const hunkMatch = line.match(/^@@ -\d+(?:,\d+)? \+(\d+)/);
             if (hunkMatch) {
@@ -294,40 +310,68 @@ export class SecretScanner {
         }
         return secrets;
     }
+    /**
+     * Built-in path-skip regexes shared between the working-tree walk
+     * (`getFiles`) and the git-history diff path (`scanDiff`). #60: previously
+     * only the working-tree walk applied these — git-history scans walked
+     * every diff including `Cargo.lock`, `*.lock`, binary blobs, etc.,
+     * producing noisy "Status: Historical" findings on paths the user had
+     * already excluded from their working-tree scan.
+     */
+    static BUILTIN_EXCLUDE_PATTERNS = [
+        /node_modules/,
+        /\.git/,
+        /dist/,
+        /build/,
+        /\.min\./,
+        /vendor/,
+        /\.lock$/,
+        /package-lock\.json$/,
+        /yarn\.lock$/,
+        /\.png$/i,
+        /\.jpg$/i,
+        /\.jpeg$/i,
+        /\.gif$/i,
+        /\.ico$/i,
+        /\.svg$/i,
+        /\.woff2?$/i,
+        /\.ttf$/i,
+        /\.eot$/i,
+        /\.mp[34]$/i,
+        /\.wav$/i,
+        /\.avi$/i,
+        /\.mov$/i,
+        /\.pdf$/i,
+        /\.zip$/i,
+        /\.tar$/i,
+        /\.gz$/i,
+        /\.wasm$/i,
+    ];
+    /**
+     * #60: returns true when a path should be filtered out per built-in
+     * regex excludes + user-supplied include/exclude minimatch globs.
+     * Used by both the working-tree walk and the git-history diff parser.
+     */
+    isPathExcluded(relativePath) {
+        if (SecretScanner.BUILTIN_EXCLUDE_PATTERNS.some((p) => p.test(relativePath))) {
+            return true;
+        }
+        const userExcludeGlobs = this.options.excludeFiles ?? [];
+        if (userExcludeGlobs.length && userExcludeGlobs.some((g) => minimatch(relativePath, g, { dot: true }))) {
+            return true;
+        }
+        const userIncludeGlobs = this.options.includeFiles ?? [];
+        if (userIncludeGlobs.length && !userIncludeGlobs.some((g) => minimatch(relativePath, g, { dot: true }))) {
+            return true;
+        }
+        return false;
+    }
     /**
      * Get list of files to scan
      */
     getFiles(directory) {
         const files = [];
-        const excludePatterns = [
-            /node_modules/,
-            /\.git/,
-            /dist/,
-            /build/,
-            /\.min\./,
-            /vendor/,
-            /\.lock$/,
-            /package-lock\.json$/,
-            /yarn\.lock$/,
-            /\.png$/i,
-            /\.jpg$/i,
-            /\.jpeg$/i,
-            /\.gif$/i,
-            /\.ico$/i,
-            /\.svg$/i,
-            /\.woff2?$/i,
-            /\.ttf$/i,
-            /\.eot$/i,
-            /\.mp[34]$/i,
-            /\.wav$/i,
-            /\.avi$/i,
-            /\.mov$/i,
-            /\.pdf$/i,
-            /\.zip$/i,
-            /\.tar$/i,
-            /\.gz$/i,
-            /\.wasm$/i,
-        ];
+        const excludePatterns = SecretScanner.BUILTIN_EXCLUDE_PATTERNS;
         // #18: user-provided include/exclude patterns are globs (matching the
         // shape used by `cognium.config.json` and the CLI's `--include` /
         // `--exclude` flags). Match via minimatch — passing them to RegExp

package/dist/secret-scan/scanner.js.map

@@ -1 +1 @@
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package/dist/spec-gap/analyzer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"analyzer.d.ts","sourceRoot":"","sources":["../../src/spec-gap/analyzer.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAIH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AAKzD,OAAO,KAAK,EACV,aAAa,EACb,cAAc,EAIf,MAAM,YAAY,CAAC;AA4CpB,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,EAAE,CAmC1D;AA+RD;;GAEG;AACH,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,eAAe,EAAE,QAAQ,EAAE,EAC3B,OAAO,EAAE,cAAc,GACtB,OAAO,CAAC,aAAa,CAAC,CAuIxB"}
+{"version":3,"file":"analyzer.d.ts","sourceRoot":"","sources":["../../src/spec-gap/analyzer.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAIH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AAKzD,OAAO,KAAK,EACV,aAAa,EACb,cAAc,EAIf,MAAM,YAAY,CAAC;AA4CpB,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,EAAE,CAmC1D;AAgVD;;GAEG;AACH,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,eAAe,EAAE,QAAQ,EAAE,EAC3B,OAAO,EAAE,cAAc,GACtB,OAAO,CAAC,aAAa,CAAC,CAuIxB"}

package/dist/spec-gap/analyzer.js

@@ -128,10 +128,42 @@ function functionTokens(fn) {
 /**
  * Match a requirement against all function effects, returning the best match.
  */
+/**
+ * #59: when generate-spec emits "System shall prevent CWE-N: ..." MUST
+ * requirements (one per vulnerability it detected), the token-overlap
+ * matcher couldn't find any function — the CWE-N prefix doesn't tokenize
+ * into anything a function effect carries. Result: round-trip
+ * (generate-spec → spec-diff) reported the synthesized security
+ * requirements as uncovered, even though the source code IS what produced
+ * them.
+ *
+ * Map CWE numbers to the side-effect kinds we'd expect to see in code that
+ * could implement protection. Heuristic but reasonable — "prevent CWE-89"
+ * matches any function with database side effects (the SQL surface is
+ * present and presumably guarded).
+ */
+const CWE_TO_SIDE_EFFECTS = {
+    '79': ['network', 'io'], // XSS — HTML rendering
+    '89': ['database'], // SQL injection
+    '78': ['io'], // command injection / shell exec
+    '22': ['filesystem'], // path traversal
+    '918': ['network'], // SSRF
+    '94': ['database', 'network', 'io', 'filesystem'], // code injection (broad)
+    '502': ['database', 'network', 'io', 'filesystem'], // deserialization (broad)
+    '434': ['filesystem'], // file upload
+    '352': ['network'], // CSRF
+    '601': ['network'], // open redirect
+};
 function matchRequirement(req, effects, minConfidence) {
     const reqTokens = tokenize(req.description);
     let bestMatch = null;
     let bestConfidence = 0;
+    // #59: extract `CWE-N` from "System shall prevent CWE-N: ..." style
+    // requirements. When present, match any function with the appropriate
+    // class of side effect.
+    const cweMatch = req.description.match(/\bCWE-(\d+)\b/i);
+    const cweNum = cweMatch ? cweMatch[1] : null;
+    const cweKinds = cweNum ? (CWE_TO_SIDE_EFFECTS[cweNum] ?? []) : [];
     for (const fn of effects) {
         const fnTokens = functionTokens(fn);
         let confidence = tokenOverlap(reqTokens, fnTokens);
@@ -155,13 +187,25 @@ function matchRequirement(req, effects, minConfidence) {
                 confidence = Math.min(1, confidence + 0.1);
             }
         }
+        // #59: CWE-aware bonus. If the requirement names a CWE and this
+        // function has a side effect compatible with that CWE class, treat
+        // it as a strong match. Bonus is large (+0.6) since the generic
+        // token overlap is otherwise zero on these auto-generated reqs.
+        if (cweKinds.length > 0) {
+            const hasCWEEffect = fn.sideEffects.some(se => cweKinds.includes(se.kind));
+            if (hasCWEEffect) {
+                confidence = Math.min(1, confidence + 0.6);
+            }
+        }
         if (confidence > bestConfidence && confidence >= minConfidence) {
             bestConfidence = confidence;
             bestMatch = {
                 requirement: req,
                 matchedFunction: fn.name,
                 confidence,
-                matchReason: `Token overlap with ${fn.name}()`,
+                matchReason: cweKinds.length > 0 && fn.sideEffects.some(se => cweKinds.includes(se.kind))
+                    ? `CWE-${cweNum} match: ${fn.name}() has ${fn.sideEffects.map(se => se.kind).join('/')} side effect`
+                    : `Token overlap with ${fn.name}()`,
             };
         }
     }

package/dist/spec-gap/analyzer.js.map

@@ -1 +1 @@
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package/dist/specifica/feature-clustering.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"feature-clustering.d.ts","sourceRoot":"","sources":["../../src/specifica/feature-clustering.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAE/D;;GAEG;AACH,wBAAgB,qBAAqB,CACnC,YAAY,EAAE,YAAY,EAAE,EAC5B,OAAO,EAAE,MAAM,GACd,cAAc,EAAE,CAoClB;AA2KD;;GAEG;AACH,wBAAgB,yBAAyB,CACvC,QAAQ,EAAE,cAAc,EAAE,EAC1B,QAAQ,GAAE,MAAU,GACnB,cAAc,EAAE,CAkBlB;AAED;;GAEG;AACH,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,cAAc,EAAE,GAAG,cAAc,EAAE,CAOrF"}
+{"version":3,"file":"feature-clustering.d.ts","sourceRoot":"","sources":["../../src/specifica/feature-clustering.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAE/D;;GAEG;AACH,wBAAgB,qBAAqB,CACnC,YAAY,EAAE,YAAY,EAAE,EAC5B,OAAO,EAAE,MAAM,GACd,cAAc,EAAE,CAoClB;AA+KD;;GAEG;AACH,wBAAgB,yBAAyB,CACvC,QAAQ,EAAE,cAAc,EAAE,EAC1B,QAAQ,GAAE,MAAU,GACnB,cAAc,EAAE,CAkBlB;AAED;;GAEG;AACH,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,cAAc,EAAE,GAAG,cAAc,EAAE,CAOrF"}

package/dist/specifica/feature-clustering.js

@@ -76,9 +76,14 @@ function clusterByDirectory(evidenceList, rootDir) {
         // Get directory relative to root
         const relativePath = path.relative(rootDir, evidence.filePath);
         const dir = path.dirname(relativePath);
-        // Use last directory segment as feature name
+        // Use last directory segment as feature name.
+        // #58 secondary: files at the repo root produce `dir === '.'`, which
+        // ended up labeled `.` in cluster output (`Found 1 features:  - .`).
+        // Rename to `root` so it's readable.
         const segments = dir.split(path.sep);
-        const feature = segments[segments.length - 1] || 'root';
+        let feature = segments[segments.length - 1] || 'root';
+        if (feature === '.')
+            feature = 'root';
         if (!clusters.has(feature)) {
             clusters.set(feature, []);
         }

package/dist/specifica/feature-clustering.js.map

@@ -1 +1 @@
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+{"version":3,"file":"feature-clustering.js","sourceRoot":"","sources":["../../src/specifica/feature-clustering.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAG7B;;GAEG;AACH,MAAM,UAAU,qBAAqB,CACnC,YAA4B,EAC5B,OAAe;IAEf,MAAM,QAAQ,GAAgC,IAAI,GAAG,EAAE,CAAC;IAExD,oDAAoD;IACpD,MAAM,eAAe,GAAG,gBAAgB,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;IAChE,KAAK,MAAM,OAAO,IAAI,eAAe,EAAE,CAAC;QACtC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;IACtC,CAAC;IAED,yDAAyD;IACzD,IAAI,QAAQ,CAAC,IAAI,KAAK,CAAC,EAAE,CAAC;QACxB,MAAM,WAAW,GAAG,kBAAkB,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;QAC9D,KAAK,MAAM,OAAO,IAAI,WAAW,EAAE,CAAC;YAClC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QACtC,CAAC;IACH,CAAC;IAED,wCAAwC;IACxC,MAAM,YAAY,GAAG,eAAe,CAAC,YAAY,CAAC,CAAC;IACnD,aAAa,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC;IAEtC,uDAAuD;IACvD,IAAI,QAAQ,CAAC,IAAI,KAAK,CAAC,EAAE,CAAC;QACxB,KAAK,MAAM,QAAQ,IAAI,YAAY,EAAE,CAAC;YACpC,MAAM,IAAI,GAAG,0BAA0B,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;YAC3D,QAAQ,CAAC,GAAG,CAAC,IAAI,EAAE;gBACjB,IAAI;gBACJ,KAAK,EAAE,CAAC,QAAQ,CAAC,QAAQ,CAAC;gBAC1B,QAAQ,EAAE,CAAC,QAAQ,CAAC;gBACpB,UAAU,EAAE,GAAG;gBACf,gBAAgB,EAAE,QAAQ;aAC3B,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;AACvC,CAAC;AAED;;GAEG;AACH,SAAS,gBAAgB,CAAC,YAA4B,EAAE,OAAe;IACrE,MAAM,QAAQ,GAAgC,IAAI,GAAG,EAAE,CAAC;IAExD,KAAK,MAAM,QAAQ,IAAI,YAAY,EAAE,CAAC;QACpC,kDAAkD;QAClD,IAAI,QAAQ,CAAC,QAAQ,KAAK,MAAM;YAAE,SAAS;QAE3C,qCAAqC;QACrC,MAAM,WAAW,GAAG,kBAAkB,CAAC,QAAQ,CAAC,CAAC;QACjD,IAAI,CAAC,WAAW;YAAE,SAAS;QAE3B,oEAAoE;QACpE,MAAM,OAAO,GAAG,WAAW,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,IAAI,SAAS,CAAC;QAE1D,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC;YAC3B,QAAQ,CAAC,GAAG,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;QAC5B,CAAC;QACD,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IACxC,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,EAAE,EAAE,CAAC,CAAC;QAC/D,IAAI;QACJ,KAAK,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC;QACpC,QAAQ;QACR,UAAU,EAAE,GAAG;QACf,gBAAgB,EAAE,SAAkB;KACrC,CAAC,CAAC,CAAC;AACN,CAAC;AAED;;GAEG;AACH,SAAS,kBAAkB,CAAC,YAA4B,EAAE,OAAe;IACvE,MAAM,QAAQ,GAAgC,IAAI,GAAG,EAAE,CAAC;IAExD,KAAK,MAAM,QAAQ,IAAI,YAAY,EAAE,CAAC;QACpC,iCAAiC;QACjC,MAAM,YAAY,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,QAAQ,CAAC,QAAQ,CAAC,CAAC;QAC/D,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAEvC,8CAA8C;QAC9C,qEAAqE;QACrE,qEAAqE;QACrE,qCAAqC;QACrC,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrC,IAAI,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,MAAM,CAAC;QACtD,IAAI,OAAO,KAAK,GAAG;YAAE,OAAO,GAAG,MAAM,CAAC;QAEtC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC;YAC3B,QAAQ,CAAC,GAAG,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;QAC5B,CAAC;QACD,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IACxC,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,EAAE,EAAE,CAAC,CAAC;QAC/D,IAAI;QACJ,KAAK,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC;QACpC,QAAQ;QACR,UAAU,EAAE,GAAG;QACf,gBAAgB,EAAE,WAAoB;KACvC,CAAC,CAAC,CAAC;AACN,CAAC;AAED;;GAEG;AACH,SAAS,eAAe,CAAC,YAA4B;IACnD,MAAM,QAAQ,GAAgC,IAAI,GAAG,EAAE,CAAC;IAExD,KAAK,MAAM,QAAQ,IAAI,YAAY,EAAE,CAAC;QACpC,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,QAAQ,EAAE,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC;QAEnF,sCAAsC;QACtC,MAAM,OAAO,GAAG,0BAA0B,CAAC,QAAQ,CAAC,CAAC;QAErD,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC;YAC3B,QAAQ,CAAC,GAAG,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;QAC5B,CAAC;QACD,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IACxC,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,EAAE,EAAE,CAAC,CAAC;QAC/D,IAAI;QACJ,KAAK,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC;QACpC,QAAQ;QACR,UAAU,EAAE,GAAG;QACf,gBAAgB,EAAE,QAAiB;KACpC,CAAC,CAAC,CAAC;AACN,CAAC;AAED;;GAEG;AACH,SAAS,aAAa,CACpB,QAAqC,EACrC,WAA6B;IAE7B,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE,CAAC;QACrC,IAAI,QAAQ,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,mDAAmD;YACnD,MAAM,eAAe,GAAG,QAAQ,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,CAAE,CAAC;YAEvD,+CAA+C;YAC/C,KAAK,MAAM,QAAQ,IAAI,UAAU,CAAC,QAAQ,EAAE,CAAC;gBAC3C,IAAI,CAAC,eAAe,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC;oBACvD,eAAe,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;oBAC9C,eAAe,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;gBAC1C,CAAC;YACH,CAAC;YAED,0CAA0C;YAC1C,eAAe,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,CACnC,eAAe,CAAC,UAAU,EAC1B,UAAU,CAAC,UAAU,CACtB,CAAC;QACJ,CAAC;IACH,CAAC;AACH,CAAC;AAED;;GAEG;AACH,SAAS,kBAAkB,CAAC,QAAsB;IAChD,mCAAmC;IACnC,KAAK,MAAM,GAAG,IAAI,QAAQ,CAAC,OAAO,EAAE,CAAC;QACnC,IAAI,GAAG,CAAC,MAAM,IAAI,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;YAC3C,wCAAwC;YACxC,MAAM,KAAK,GAAG,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;YACpC,OAAO,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACtC,CAAC;IACH,CAAC;IAED,8BAA8B;IAC9B,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IAC9C,MAAM,SAAS,GAAG,QA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package/dist/specifica/spec-generator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"spec-generator.d.ts","sourceRoot":"","sources":["../../src/specifica/spec-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EACV,YAAY,EACZ,aAAa,EACb,gBAAgB,EAEjB,MAAM,YAAY,CAAC;AAEpB;;;GAGG;AACH,wBAAsB,YAAY,CAChC,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,gBAAqB,GAC7B,OAAO,CAAC;IAAE,IAAI,EAAE,aAAa,CAAC;IAAC,MAAM,EAAE,KAAK,GAAG,QAAQ,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAmB5E;AAoQD;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,aAAa,EAAE,QAAQ,EAAE;IAAE,cAAc,EAAE,OAAO,CAAA;CAAE,GAAG,MAAM,CAsDrG"}
+{"version":3,"file":"spec-generator.d.ts","sourceRoot":"","sources":["../../src/specifica/spec-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EACV,YAAY,EACZ,aAAa,EACb,gBAAgB,EAEjB,MAAM,YAAY,CAAC;AAEpB;;;GAGG;AACH,wBAAsB,YAAY,CAChC,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,gBAAqB,GAC7B,OAAO,CAAC;IAAE,IAAI,EAAE,aAAa,CAAC;IAAC,MAAM,EAAE,KAAK,GAAG,QAAQ,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CA4B5E;AAoQD;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,aAAa,EAAE,QAAQ,EAAE;IAAE,cAAc,EAAE,OAAO,CAAA;CAAE,GAAG,MAAM,CAsDrG"}

package/dist/specifica/spec-generator.js

@@ -9,6 +9,15 @@ import { getAxLLMClient } from '../llm/ax-client.js';
  * Returns spec content and generation method used
  */
 export async function generateSpec(evidence, options = {}) {
+    // #58: --no-llm skips the LLM attempt entirely (no network call, no
+    // misleading "endpoint unreachable" fallback messages). Goes straight
+    // to the static generator.
+    if (options.skipLLM) {
+        return {
+            spec: generateFallbackSpec(evidence),
+            method: 'static',
+        };
+    }
     // Try LLM generation first
     const llmResult = await generateWithLLM(evidence, options);
     if (llmResult) {

package/dist/specifica/spec-generator.js.map

@@ -1 +1 @@
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package/dist/specifica/types.d.ts

@@ -30,6 +30,13 @@ export interface SpecificaOptions {
     generateTasks?: boolean;
     /** Enable LLM for tasks.md generation (refactoring suggestions) */
     enableTasksLLM?: boolean;
+    /**
+     * #58: when true, generateSpec skips the LLM attempt entirely and goes
+     * straight to the static fallback. Without this, every spec generation
+     * tried the LLM first and only fell back on connection failure — which
+     * misled users running with --no-llm (the request still hit the network).
+     */
+    skipLLM?: boolean;
     /** Glob patterns to include during directory walk (default: all supported extensions). */
     includePatterns?: string[];
     /** Glob patterns to exclude during directory walk. */

package/dist/specifica/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "circle-ir-ai",
-  "version": "2.7.10",
+  "version": "2.7.11",
   "description": "LLM-enhanced SAST analysis built on circle-ir",
   "main": "dist/index.js",
   "module": "dist/index.js",