circle-ir-ai 2.42.0 → 2.43.0

package/CHANGELOG.md

@@ -5,6 +5,45 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [2.43.0] - 2026-07-12
+
+### Added — per-entity design-smell detection for quality discrimination (cognium-ai#198)
+
+The quality passes keyed on **directory-averaged** metrics (avgComplexity,
+avgCBO, MI), which are refactor-invariant for design smells: splitting one
+god-class into three, or one hairy method into three, barely moves an
+average because you divide by more entities. Across the 18 contrastive
+quality-regression pairs only 1 discriminated smelly-from-refactored.
+
+New `src/quality/entity-smells.ts` (`detectEntitySmells`) consumes the
+per-entity data the averages discarded and emits **per-entity** smells with
+per-entity thresholds:
+
+- **high-complexity** — any method whose McCabe CC > 10 (named).
+- **god-class** — any type whose RFC response-surface ≥ 12. Keys on RFC, not
+  LCOM: circle-ir's per-type LCOM reports 0 on dynamic-language classes, so
+  gating on it would silently disable detection on the languages the corpus
+  most needs.
+
+Both fire on the offending entity and clear when it's split — proven by
+end-to-end discrimination tests that run `analyze` on synthetic
+smelly/refactored pairs. Wired into the quality `code-complexity` pass, so
+`quality` findings now name the method/class and discriminate the twins.
+
+**Also fixes a latent CC bug** (`health-score/calculator.ts`): circle-ir
+emits one `cyclomatic_complexity` entry *per method*, but the code used
+`.find()` and read only the first (arbitrary) method — so `maxComplexity` /
+`complexFunctions` were computed from a single method and high-complexity
+methods were under-counted. Now iterates all method entries.
+
+### Tests — lock cognium-ai#186 (browser `.query()` FP) at the pass level
+
+Added end-to-end `inputValidationPass` tests asserting that
+`navigator.permissions.query` / `chrome.tabs.query` flows are dropped
+(clean pass, no BLOCKED tier) while a real `pool.query(...)` DB sink still
+fires. #186's `isBrowserQueryApi` gate shipped earlier; this locks it so it
+can't silently regress. (1386 tests.)
+
 ## [2.42.0] - 2026-07-12
 
 ### Added — trust tier transparency: `tierReason` / `baseTier` / `blockingFindings` (cognium-ai#206)

package/dist/health-score/calculator.d.ts

@@ -7,6 +7,7 @@
 import { type ScanResult } from '../security-scan/scanner.js';
 import { type SecretScanResult } from '../secret-scan/scanner.js';
 import { type DeadCodeResult } from '../dead-code/detector.js';
+import { type EntitySmell } from '../quality/entity-smells.js';
 import { type MetricResult } from './metrics.js';
 /**
  * Health score calculation options
@@ -90,6 +91,8 @@ export interface HealthScoreResult {
         totalLoc: number;
         timestamp: string;
         durationMs: number;
+        /** cognium-ai#198 — per-entity design smells (high-CC methods, god-classes). */
+        entitySmells?: EntitySmell[];
     };
 }
 /**

package/dist/health-score/calculator.d.ts.map

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package/dist/health-score/calculator.js

@@ -13,6 +13,7 @@ import { ensureAnalyzerInitialized } from '../utils/analyzer-init.js';
 import { scanDirectory } from '../security-scan/scanner.js';
 import { quickSecretScan } from '../secret-scan/scanner.js';
 import { detectDeadCode } from '../dead-code/detector.js';
+import { detectEntitySmells } from '../quality/entity-smells.js';
 import { calculateSecurityScore, calculateMaintainabilityScore, calculateQualityScore, calculatePerformanceScore, countAnnotations, countLinesOfCode, estimateComplexity, detectNPlusOnePatterns, detectBlockingIoPatterns, getScoreLabel, getScoreColor, } from './metrics.js';
 /**
  * Default weights
@@ -176,6 +177,7 @@ export class HealthScoreCalculator {
                 totalLoc: fileInfo.totalLoc,
                 timestamp: new Date().toISOString(),
                 durationMs: Date.now() - startTime,
+                entitySmells: fileInfo.entitySmells,
             },
         };
     }
@@ -203,6 +205,7 @@ export class HealthScoreCalculator {
             avgLCOM: 0,
             avgBugHotspot: 0,
             duplicationPercent: 0,
+            entitySmells: [],
         };
         const excludePatterns = [
             /node_modules/,
@@ -320,15 +323,23 @@ export class HealthScoreCalculator {
                                 const m = metrics.find(v => v.name === name);
                                 return m ? m.value : undefined;
                             };
-                            // Cyclomatic complexity (real v(G))
-                            const cc = getMetric('cyclomatic_complexity');
-                            if (cc !== undefined) {
-                                totalComplexity += cc;
+                            // Cyclomatic complexity (real v(G)). circle-ir emits ONE
+                            // cyclomatic_complexity entry per method (tagged
+                            // `description: "method: X"`). cognium-ai#198: read ALL of
+                            // them — the previous code used `.find()` and saw only the
+                            // first (arbitrary) method's CC, so `maxComplexity` /
+                            // `complexFunctions` were computed from a single method and
+                            // high-complexity methods were silently under-counted.
+                            const methodCCs = metrics
+                                .filter((v) => v.name === 'cyclomatic_complexity')
+                                .map((v) => v.value);
+                            if (methodCCs.length > 0) {
+                                const fileMax = Math.max(...methodCCs);
+                                const fileMean = methodCCs.reduce((s, v) => s + v, 0) / methodCCs.length;
+                                totalComplexity += fileMean; // mean method CC (was: first method)
                                 fileCount++;
-                                info.maxComplexity = Math.max(info.maxComplexity, cc);
-                                if (cc > 10) {
-                                    info.complexFunctions++;
-                                }
+                                info.maxComplexity = Math.max(info.maxComplexity, fileMax);
+                                info.complexFunctions += methodCCs.filter((v) => v > 10).length;
                             }
                             else {
                                 // Fallback to regex heuristic
@@ -339,6 +350,13 @@ export class HealthScoreCalculator {
                                 if (complexity > 10)
                                     info.complexFunctions++;
                             }
+                            // cognium-ai#198: per-entity design smells (high-CC methods,
+                            // god-classes) keyed on per-method / per-type thresholds so a
+                            // smell fires on the offending entity and clears when it's
+                            // refactored — unlike the directory averages below.
+                            const smells = detectEntitySmells(file.relativePath, metrics);
+                            if (smells.length > 0)
+                                info.entitySmells.push(...smells);
                             // Composite metrics
                             // Note: MI=0 often indicates very large/complex files or parse failures.
                             // Exclude MI=0 from average to avoid skewing the score.

package/dist/health-score/calculator.js.map

@@ -1 +1 @@
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package/dist/quality/calculator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"calculator.d.ts","sourceRoot":"","sources":["../../src/quality/calculator.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAMH,OAAO,KAAK,EAAE,kBAAkB,EAAqC,MAAM,YAAY,CAAC;AAOxF,MAAM,WAAW,cAAc;IAC7B,cAAc,EAAE,MAAM,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,qBAAqB,EAAE,MAAM,CAAC;IAC9B,oBAAoB,EAAE,MAAM,CAAC;IAC7B,mBAAmB,EAAE,MAAM,CAAC;CAC7B;AAED,eAAO,MAAM,uBAAuB,EAAE,cAMrC,CAAC;AAMF,MAAM,WAAW,mBAAmB;IAClC,OAAO,CAAC,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;IAClC,UAAU,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;IACvD,oEAAoE;IACpE,eAAe,CAAC,EAAE,MAAM,EAAE,CAAC;IAC3B,oEAAoE;IACpE,eAAe,CAAC,EAAE,MAAM,EAAE,CAAC;IAC3B;;;;;OAKG;IACH,WAAW,CAAC,EAAE,OAAO,6BAA6B,EAAE,WAAW,SAAS,MAAM,CAAC,GAC3E,OAAO,CAAC,CAAC,CAAC,GACV,KAAK,CAAC;CACX;AAkTD;;;;;GAKG;AACH,wBAAsB,qBAAqB,CACzC,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,kBAAkB,CAAC,CA+E7B;AAMD;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,kBAAkB,GAAG,MAAM,CAqDtE"}
+{"version":3,"file":"calculator.d.ts","sourceRoot":"","sources":["../../src/quality/calculator.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAMH,OAAO,KAAK,EAAE,kBAAkB,EAAqC,MAAM,YAAY,CAAC;AAaxF,MAAM,WAAW,cAAc;IAC7B,cAAc,EAAE,MAAM,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,qBAAqB,EAAE,MAAM,CAAC;IAC9B,oBAAoB,EAAE,MAAM,CAAC;IAC7B,mBAAmB,EAAE,MAAM,CAAC;CAC7B;AAED,eAAO,MAAM,uBAAuB,EAAE,cAMrC,CAAC;AAMF,MAAM,WAAW,mBAAmB;IAClC,OAAO,CAAC,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;IAClC,UAAU,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;IACvD,oEAAoE;IACpE,eAAe,CAAC,EAAE,MAAM,EAAE,CAAC;IAC3B,oEAAoE;IACpE,eAAe,CAAC,EAAE,MAAM,EAAE,CAAC;IAC3B;;;;;OAKG;IACH,WAAW,CAAC,EAAE,OAAO,6BAA6B,EAAE,WAAW,SAAS,MAAM,CAAC,GAC3E,OAAO,CAAC,CAAC,CAAC,GACV,KAAK,CAAC;CACX;AAiUD;;;;;GAKG;AACH,wBAAsB,qBAAqB,CACzC,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,kBAAkB,CAAC,CA+E7B;AAMD;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,kBAAkB,GAAG,MAAM,CAqDtE"}

package/dist/quality/calculator.js

@@ -9,6 +9,7 @@ import * as fs from 'fs';
 import * as path from 'path';
 import { HealthScoreCalculator } from '../health-score/calculator.js';
 import { getQualityTier } from './types.js';
+import { smellRuleId, smellSeverity, smellMessage, } from './entity-smells.js';
 export const DEFAULT_QUALITY_WEIGHTS = {
     codeComplexity: 0.25,
     testCoverage: 0.25,
@@ -19,7 +20,7 @@ export const DEFAULT_QUALITY_WEIGHTS = {
 // ---------------------------------------------------------------------------
 // Pass builders (health-score -> quality passes)
 // ---------------------------------------------------------------------------
-function buildCodeComplexityPass(maintainability, startTime) {
+function buildCodeComplexityPass(maintainability, startTime, entitySmells = []) {
     const findings = [];
     for (const issue of maintainability.issues ?? []) {
         const lower = issue.toLowerCase();
@@ -35,6 +36,19 @@ function buildCodeComplexityPass(maintainability, startTime) {
             });
         }
     }
+    // cognium-ai#198 — per-entity design smells (high-CC methods, god-classes).
+    // These name the offending method/class and fire only when a per-entity
+    // threshold is crossed, so they discriminate smelly code from its
+    // refactored twin — unlike the directory-averaged `issues` above.
+    for (const smell of entitySmells) {
+        findings.push({
+            pass: 'code-complexity',
+            ruleId: smellRuleId(smell),
+            severity: smellSeverity(smell),
+            message: smellMessage(smell),
+            location: { file: smell.file },
+        });
+    }
     return {
         pass: 'code-complexity',
         score: clampScore(maintainability.score),
@@ -320,7 +334,7 @@ export async function calculateQualityScore(directory, options = {}) {
     options.onProgress?.('Building quality passes', 0.8);
     const passStart = Date.now();
     const passResults = [
-        buildCodeComplexityPass(healthResult.dimensions.maintainability, passStart),
+        buildCodeComplexityPass(healthResult.dimensions.maintainability, passStart, healthResult.meta.entitySmells),
         buildTestCoveragePass(healthResult.dimensions.quality, passStart),
         buildDocumentationCoveragePass(directory, healthResult, passStart),
         buildMaintainabilityIndexPass(healthResult.dimensions.maintainability, passStart),

package/dist/quality/calculator.js.map

@@ -1 +1 @@
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package/dist/quality/entity-smells.d.ts

@@ -0,0 +1,88 @@
+/**
+ * cognium-ai#198 — per-entity design-smell detection.
+ *
+ * The quality passes historically keyed on **directory-averaged** circle-ir
+ * metrics (avgComplexity, avgCBO, avgLCOM, MI). Averages are refactor-
+ * invariant for design smells: splitting one god-class into three small
+ * classes, or one high-CC method into three simple ones, barely moves the
+ * average because you divide by more entities. Result (#198): across the 18
+ * contrastive quality-regression pairs only 1 discriminated smelly-from-
+ * refactored; 6 patterns produced no signal at all (McCabe CC, god-class,
+ * …), and 10 fired on both twins.
+ *
+ * The circle-ir metric stream already carries the per-entity data the
+ * averages threw away:
+ *   - one `cyclomatic_complexity` entry per method, tagged
+ *     `description: "method: <name>"`;
+ *   - per-type `RFC` / `LCOM` / `CBO` / `DIT` / `NOC` entries, tagged
+ *     `description: "type: <name>"`.
+ *
+ * This module consumes that stream and emits **per-entity** smells with
+ * per-entity thresholds, so a smell fires on the offending method/class and
+ * *not* on its refactored replacements. It is a pure function of the metric
+ * array (no I/O, no circle-ir re-analysis) so it is unit-testable against
+ * synthetic contrastive pairs in isolation.
+ */
+/** Minimal shape of a circle-ir metric entry we depend on. */
+export interface MetricEntryLike {
+    name: string;
+    value: number;
+    /** circle-ir tags per-entity metrics as `"method: X"` / `"type: X"`. */
+    description?: string;
+}
+export type SmellKind = 'high-complexity' | 'god-class';
+export interface EntitySmell {
+    /** Source file the entity lives in. */
+    file: string;
+    /** Method or class name (best-effort from the metric description). */
+    entity: string;
+    /** What kind of entity produced the smell. */
+    entityKind: 'method' | 'class';
+    /** Which smell fired. */
+    smell: SmellKind;
+    /** The metric that tripped the threshold. */
+    metric: string;
+    /** The metric value observed. */
+    value: number;
+    /** The threshold it exceeded. */
+    threshold: number;
+}
+/**
+ * Per-entity thresholds. Chosen from established static-analysis defaults
+ * (McCabe: CC > 10 = high risk; a large response-for-class surface marks the
+ * god-class / large-class smell) and tuned so refactored twins fall below
+ * them. Overridable so a stricter/looser gate can be configured.
+ *
+ * **On cohesion:** circle-ir's per-type `LCOM` is unreliable on dynamic
+ * languages (it reports 0 on genuinely-smelly JS/TS classes because field
+ * access can't always be resolved statically), so it is deliberately NOT
+ * used to gate god-class — doing so would silently disable detection on the
+ * languages the #198 corpus most needs it for. God-class keys on the robust,
+ * language-agnostic **RFC** response surface instead.
+ */
+export interface SmellThresholds {
+    /** McCabe cyclomatic complexity per method (high-risk boundary). */
+    methodComplexity: number;
+    /** RFC (response-for-class ≈ method surface) marking a class "large". */
+    classRfc: number;
+}
+export declare const DEFAULT_SMELL_THRESHOLDS: SmellThresholds;
+/**
+ * Detect per-entity smells for a single file's circle-ir metric array.
+ *
+ * - **high-complexity**: any method whose cyclomatic complexity exceeds
+ *   `methodComplexity`. Discriminates because a refactor lowers the *peak*
+ *   method's CC, even when total/average CC is unchanged.
+ * - **god-class**: a type with a large response surface (`RFC ≥ classRfc`).
+ *   RFC drops when the class is split across collaborators, so the smell
+ *   clears on the refactored twin. `LCOM ≥ classLcom` (when available)
+ *   escalates severity but is not required — see {@link SmellThresholds}.
+ */
+export declare function detectEntitySmells(file: string, metrics: readonly MetricEntryLike[], thresholds?: SmellThresholds): EntitySmell[];
+/** Map a smell to a stable quality ruleId. */
+export declare function smellRuleId(smell: EntitySmell): string;
+/** Map a smell to a severity by how far past the threshold it sits. */
+export declare function smellSeverity(smell: EntitySmell): 'low' | 'medium' | 'high';
+/** Human-readable message for a smell finding. */
+export declare function smellMessage(smell: EntitySmell): string;
+//# sourceMappingURL=entity-smells.d.ts.map

package/dist/quality/entity-smells.d.ts.map

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package/dist/quality/entity-smells.js

@@ -0,0 +1,127 @@
+/**
+ * cognium-ai#198 — per-entity design-smell detection.
+ *
+ * The quality passes historically keyed on **directory-averaged** circle-ir
+ * metrics (avgComplexity, avgCBO, avgLCOM, MI). Averages are refactor-
+ * invariant for design smells: splitting one god-class into three small
+ * classes, or one high-CC method into three simple ones, barely moves the
+ * average because you divide by more entities. Result (#198): across the 18
+ * contrastive quality-regression pairs only 1 discriminated smelly-from-
+ * refactored; 6 patterns produced no signal at all (McCabe CC, god-class,
+ * …), and 10 fired on both twins.
+ *
+ * The circle-ir metric stream already carries the per-entity data the
+ * averages threw away:
+ *   - one `cyclomatic_complexity` entry per method, tagged
+ *     `description: "method: <name>"`;
+ *   - per-type `RFC` / `LCOM` / `CBO` / `DIT` / `NOC` entries, tagged
+ *     `description: "type: <name>"`.
+ *
+ * This module consumes that stream and emits **per-entity** smells with
+ * per-entity thresholds, so a smell fires on the offending method/class and
+ * *not* on its refactored replacements. It is a pure function of the metric
+ * array (no I/O, no circle-ir re-analysis) so it is unit-testable against
+ * synthetic contrastive pairs in isolation.
+ */
+export const DEFAULT_SMELL_THRESHOLDS = {
+    methodComplexity: 10,
+    classRfc: 12,
+};
+/** Parse `"method: foo"` / `"type: Bar"` → `foo` / `Bar`; else undefined. */
+function entityName(description, prefix) {
+    if (!description)
+        return undefined;
+    const m = new RegExp(`^${prefix}:\\s*(.+)$`).exec(description.trim());
+    return m ? m[1].trim() : undefined;
+}
+/**
+ * Detect per-entity smells for a single file's circle-ir metric array.
+ *
+ * - **high-complexity**: any method whose cyclomatic complexity exceeds
+ *   `methodComplexity`. Discriminates because a refactor lowers the *peak*
+ *   method's CC, even when total/average CC is unchanged.
+ * - **god-class**: a type with a large response surface (`RFC ≥ classRfc`).
+ *   RFC drops when the class is split across collaborators, so the smell
+ *   clears on the refactored twin. `LCOM ≥ classLcom` (when available)
+ *   escalates severity but is not required — see {@link SmellThresholds}.
+ */
+export function detectEntitySmells(file, metrics, thresholds = DEFAULT_SMELL_THRESHOLDS) {
+    const smells = [];
+    // -- Per-method cyclomatic complexity -------------------------------------
+    for (const m of metrics) {
+        if (m.name !== 'cyclomatic_complexity')
+            continue;
+        const method = entityName(m.description, 'method');
+        if (!method)
+            continue; // aggregate/module-level entry — skip
+        if (m.value > thresholds.methodComplexity) {
+            smells.push({
+                file,
+                entity: method,
+                entityKind: 'method',
+                smell: 'high-complexity',
+                metric: 'cyclomatic_complexity',
+                value: m.value,
+                threshold: thresholds.methodComplexity,
+            });
+        }
+    }
+    // -- Per-class god-class / low-cohesion -----------------------------------
+    // Group the per-type metrics (RFC, LCOM, …) by their type name.
+    const byType = new Map();
+    for (const m of metrics) {
+        const type = entityName(m.description, 'type');
+        if (!type)
+            continue;
+        let bucket = byType.get(type);
+        if (!bucket) {
+            bucket = new Map();
+            byType.set(type, bucket);
+        }
+        // keep the max if a metric repeats for the same type
+        bucket.set(m.name, Math.max(bucket.get(m.name) ?? -Infinity, m.value));
+    }
+    for (const [type, bucket] of byType) {
+        const rfc = bucket.get('RFC');
+        if (rfc === undefined || rfc < thresholds.classRfc)
+            continue;
+        smells.push({
+            file,
+            entity: type,
+            entityKind: 'class',
+            smell: 'god-class',
+            metric: 'RFC',
+            value: rfc,
+            threshold: thresholds.classRfc,
+        });
+    }
+    return smells;
+}
+/** Map a smell to a stable quality ruleId. */
+export function smellRuleId(smell) {
+    switch (smell.smell) {
+        case 'high-complexity':
+            return 'code-complexity-high-mccabe';
+        case 'god-class':
+            return 'code-complexity-god-class';
+    }
+}
+/** Map a smell to a severity by how far past the threshold it sits. */
+export function smellSeverity(smell) {
+    const ratio = smell.value / smell.threshold;
+    if (ratio >= 2)
+        return 'high';
+    if (ratio >= 1.5)
+        return 'medium';
+    return 'low';
+}
+/** Human-readable message for a smell finding. */
+export function smellMessage(smell) {
+    switch (smell.smell) {
+        case 'high-complexity':
+            return `Method '${smell.entity}' has cyclomatic complexity ${smell.value} (> ${smell.threshold})`;
+        case 'god-class':
+            return `Class '${smell.entity}' has a large response surface (${smell.metric} ${smell.value} ≥ ${smell.threshold}) — god-class / large-class smell`;
+    }
+}
+//# sourceMappingURL=entity-smells.js.map

package/dist/quality/entity-smells.js.map

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package/dist/quality/index.d.ts

@@ -12,4 +12,5 @@
 export { type QualityFinding, type QualityPassResult, type QualityTier, type QualityScoreResult, getQualityTier, QUALITY_TIER_COLORS, } from './types.js';
 export { calculateQualityScore, formatQualityReport, DEFAULT_QUALITY_WEIGHTS, type QualityWeights, type QualityScoreOptions, } from './calculator.js';
 export { generateQualityBadge, generateQualityBadgeFromScore, } from './badge.js';
+export { detectEntitySmells, smellRuleId, smellSeverity, smellMessage, DEFAULT_SMELL_THRESHOLDS, type EntitySmell, type SmellKind, type SmellThresholds, type MetricEntryLike, } from './entity-smells.js';
 //# sourceMappingURL=index.d.ts.map

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package/dist/quality/index.js

@@ -15,4 +15,6 @@ export { getQualityTier, QUALITY_TIER_COLORS, } from './types.js';
 export { calculateQualityScore, formatQualityReport, DEFAULT_QUALITY_WEIGHTS, } from './calculator.js';
 // Badge
 export { generateQualityBadge, generateQualityBadgeFromScore, } from './badge.js';
+// cognium-ai#198 — per-entity design-smell detection
+export { detectEntitySmells, smellRuleId, smellSeverity, smellMessage, DEFAULT_SMELL_THRESHOLDS, } from './entity-smells.js';
 //# sourceMappingURL=index.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "circle-ir-ai",
-  "version": "2.42.0",
+  "version": "2.43.0",
   "description": "LLM-enhanced SAST analysis built on circle-ir",
   "main": "dist/index.js",
   "module": "dist/index.js",