circle-ir-ai 2.26.0 → 2.28.1

package/dist/cache/classification-cache.d.ts

@@ -2,69 +2,125 @@
  * Classification Cache
  *
  * Caches LLM classification results by composite key
- * (content hash + classifier name + per-phase model fingerprint).
- * Optimized for batch classifier workloads with shorter TTL than FileCache.
+ * (schemaVer + content hash + classifier name + per-phase model fingerprint
+ * + optional coordinate hash-prefix).
  *
- * Key differences from FileCache:
- * - Composite key: SHA-256(content + '\0' + classifierName + '\0' + modelFingerprint)
- * - Shorter default TTL (24h vs 7d)
- * - Cache directory: .cognium/cache/
- * - Hit/miss tracking for observability
+ * Storage is delegated to a `CacheBackend` (cognium-ai#158). Default
+ * = `LocalFSBackend`. Selecting `LLM_CACHE_BACKEND=r2` swaps to Cloudflare
+ * R2 transparently so two runners on different machines share the same
+ * cache.
  *
- * Model dimension (cognium-ai#151 P0 spike):
- *   When `modelFingerprint` is supplied (typically via
- *   `getPhaseModelFingerprint()` from `../llm/config.ts`) it becomes part
- *   of the cache key. This prevents a `gemma3:12b` discovery result from
- *   being silently reused when the operator switches to `gpt-4o-mini` for
- *   discovery. The fingerprint is the same identity the persistent cache
- *   (#158) uses, so call-site cache and S3 cache stay in lockstep.
+ * # Round 2 (2.28.0) key shape
+ *
+ *   sha256(
+ *     'cic:v2'           // SCHEMA_VER — bump on breaking key changes
+ *     + '\0' + namespace // 'tree' | 'verify' | 'discovery'
+ *     + '\0' + classifier
+ *     + '\0' + content
+ *     + '\0' + modelFingerprint     // per-phase, see ../llm/config.ts
+ *     + '\0' + coordinateHashPrefix // empty for non-tree, or _unowned
+ *   )
+ *
+ * Why `namespace` is in the hash:
+ *   So a tree-cache entry can never collide with a verify-cache entry
+ *   even if a future caller happens to choose the same classifier name.
+ *
+ * Why `coordinate` is in the hash (when present):
+ *   So `commons-lang3@3.12.0` and `commons-lang3@3.13.0` produce
+ *   different SHAs for the same byte-identical file (we WANT them
+ *   distinct because the surrounding rules / version-conditioned
+ *   profile could differ). The coordinate is also reflected in the
+ *   backend path layout — see `./backends/layout.ts` — so the cache
+ *   is browseable in R2 dashboard by package.
  *
- *   Backward compat: when omitted the key falls through to the prior
- *   2-component shape, so existing callers (and on-disk entries from
- *   ≤2.21.0) keep working — the first run after wire-through is a cache
- *   miss only for the call sites that opt into the fingerprint.
+ * Model dimension (cognium-ai#151 P0 spike):
+ *   `modelFingerprint` is the per-phase identity from
+ *   `getDiscoveryModelFingerprint()` / `getVerifyModelFingerprint()` /
+ *   `getComponentModelFingerprint()` in `../llm/config.ts`. Each cache
+ *   instance uses the fingerprint scoped to its phase so swapping the
+ *   discovery model doesn't invalidate verify results and vice versa
+ *   (#158 D2).
+ */
+import type { CacheBackend, CacheNamespace } from './backend.js';
+import type { PackageCoordinate } from './coordinate.js';
+/**
+ * Wire-format version. Bump on every breaking change to the key composition
+ * OR the on-disk envelope shape. Operators rolling back to an older
+ * circle-ir-ai will see misses against newer SCHEMA_VER entries and
+ * re-populate cleanly.
  */
+export declare const SCHEMA_VER = "cic:v2";
 export interface ClassificationCacheOptions {
-    /** Cache directory (default: .cognium/cache/ in project root) */
+    /**
+     * Logical cache namespace. Determines backend path layout AND whether
+     * the cache participates in the coordinate-aware tree layout.
+     *
+     * Defaults to `'classifier'` for generic LLM classification callers
+     * (batch-classifier, trust passes) that don't care about the namespace
+     * dimension. The three SAST caches (`tree-cache.ts`, `verify-cache.ts`,
+     * `discovery-cache.ts`) always pass their own namespace explicitly.
+     */
+    namespace?: CacheNamespace;
+    /** Cache directory (default: .cognium/cache/ in project root). For
+     *  non-fs backends this is interpreted as a sub-prefix only. */
     cacheDir?: string;
     /** Maximum age of entries in ms (default: 24h) */
     maxAge?: number;
     /** Enable/disable cache (default: true) */
     enabled?: boolean;
     /**
-     * Per-phase model identity for cache namespacing (cognium-ai#151).
-     * Typically the output of `getPhaseModelFingerprint(config)` from
-     * `../llm/config.ts`. Two scans with different discovery / verification
-     * models will produce different cache keys and not poison each other.
-     * Defaults to empty string (legacy 2-component key shape).
+     * Per-phase model identity for cache namespacing (cognium-ai#151 / #158 D2).
+     * Tree-cache passes the discovery+verify joint fingerprint; verify-cache
+     * passes the verify-only fingerprint; discovery-cache passes the
+     * discovery-only fingerprint. See `../llm/config.ts`.
      */
     modelFingerprint?: string;
+    /**
+     * Override the backend instance (tests). When omitted we build one
+     * via `makeBackend(cacheDir, namespace)` based on `LLM_CACHE_BACKEND` env.
+     */
+    backend?: CacheBackend;
+}
+/**
+ * Per-get/set call extras. `coordinate` is honored only for the
+ * `tree` namespace; passing it elsewhere is a no-op so callers don't
+ * have to branch.
+ */
+export interface CacheCallOptions {
+    coordinate?: PackageCoordinate;
 }
 export declare class ClassificationCache<T = unknown> {
+    private namespace;
     private cacheDir;
     private maxAge;
     private enabled;
     private modelFingerprint;
+    private backend;
     private memoryCache;
     private hits;
     private misses;
     constructor(options?: ClassificationCacheOptions);
     /** Per-phase model identity used in cache key (cognium-ai#151). */
     getModelFingerprint(): string;
-    private computeKey;
-    private getCachePath;
-    private ensureCacheDir;
+    /** Backend kind identifier (`local-fs` | `memory` | `r2`). Observability. */
+    getBackendKind(): string;
+    /** Logical namespace (`tree` | `verify` | `discovery`). Observability. */
+    getNamespace(): CacheNamespace;
+    private computeDigest;
+    private toCacheKey;
     private isValid;
-    get(content: string, classifier: string): T | null;
-    set(content: string, classifier: string, result: T): void;
-    has(content: string, classifier: string): boolean;
-    clear(): void;
-    stats(): {
+    get(content: string, classifier: string, opts?: CacheCallOptions): Promise<T | null>;
+    set(content: string, classifier: string, result: T, opts?: CacheCallOptions): Promise<void>;
+    has(content: string, classifier: string, opts?: CacheCallOptions): Promise<boolean>;
+    clear(): Promise<void>;
+    stats(): Promise<{
+        namespace: CacheNamespace;
         memoryEntries: number;
         diskEntries: number;
         hitRate: number;
-    };
+        backend: string;
+    }>;
 }
-export declare function getClassificationCache(options?: ClassificationCacheOptions): ClassificationCache;
+export declare function getClassificationCache<T = unknown>(options?: ClassificationCacheOptions): ClassificationCache<T>;
 export declare function resetClassificationCache(): void;
 //# sourceMappingURL=classification-cache.d.ts.map

package/dist/cache/classification-cache.d.ts.map

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package/dist/cache/classification-cache.js

@@ -2,192 +2,217 @@
  * Classification Cache
  *
  * Caches LLM classification results by composite key
- * (content hash + classifier name + per-phase model fingerprint).
- * Optimized for batch classifier workloads with shorter TTL than FileCache.
+ * (schemaVer + content hash + classifier name + per-phase model fingerprint
+ * + optional coordinate hash-prefix).
  *
- * Key differences from FileCache:
- * - Composite key: SHA-256(content + '\0' + classifierName + '\0' + modelFingerprint)
- * - Shorter default TTL (24h vs 7d)
- * - Cache directory: .cognium/cache/
- * - Hit/miss tracking for observability
+ * Storage is delegated to a `CacheBackend` (cognium-ai#158). Default
+ * = `LocalFSBackend`. Selecting `LLM_CACHE_BACKEND=r2` swaps to Cloudflare
+ * R2 transparently so two runners on different machines share the same
+ * cache.
  *
- * Model dimension (cognium-ai#151 P0 spike):
- *   When `modelFingerprint` is supplied (typically via
- *   `getPhaseModelFingerprint()` from `../llm/config.ts`) it becomes part
- *   of the cache key. This prevents a `gemma3:12b` discovery result from
- *   being silently reused when the operator switches to `gpt-4o-mini` for
- *   discovery. The fingerprint is the same identity the persistent cache
- *   (#158) uses, so call-site cache and S3 cache stay in lockstep.
+ * # Round 2 (2.28.0) key shape
+ *
+ *   sha256(
+ *     'cic:v2'           // SCHEMA_VER — bump on breaking key changes
+ *     + '\0' + namespace // 'tree' | 'verify' | 'discovery'
+ *     + '\0' + classifier
+ *     + '\0' + content
+ *     + '\0' + modelFingerprint     // per-phase, see ../llm/config.ts
+ *     + '\0' + coordinateHashPrefix // empty for non-tree, or _unowned
+ *   )
+ *
+ * Why `namespace` is in the hash:
+ *   So a tree-cache entry can never collide with a verify-cache entry
+ *   even if a future caller happens to choose the same classifier name.
  *
- *   Backward compat: when omitted the key falls through to the prior
- *   2-component shape, so existing callers (and on-disk entries from
- *   ≤2.21.0) keep working — the first run after wire-through is a cache
- *   miss only for the call sites that opt into the fingerprint.
+ * Why `coordinate` is in the hash (when present):
+ *   So `commons-lang3@3.12.0` and `commons-lang3@3.13.0` produce
+ *   different SHAs for the same byte-identical file (we WANT them
+ *   distinct because the surrounding rules / version-conditioned
+ *   profile could differ). The coordinate is also reflected in the
+ *   backend path layout — see `./backends/layout.ts` — so the cache
+ *   is browseable in R2 dashboard by package.
+ *
+ * Model dimension (cognium-ai#151 P0 spike):
+ *   `modelFingerprint` is the per-phase identity from
+ *   `getDiscoveryModelFingerprint()` / `getVerifyModelFingerprint()` /
+ *   `getComponentModelFingerprint()` in `../llm/config.ts`. Each cache
+ *   instance uses the fingerprint scoped to its phase so swapping the
+ *   discovery model doesn't invalidate verify results and vice versa
+ *   (#158 D2).
  */
-import * as fs from 'fs';
 import * as path from 'path';
 import * as crypto from 'crypto';
+import { makeBackend } from './backends/index.js';
+import { coordinateSegments } from './coordinate.js';
+/**
+ * Wire-format version. Bump on every breaking change to the key composition
+ * OR the on-disk envelope shape. Operators rolling back to an older
+ * circle-ir-ai will see misses against newer SCHEMA_VER entries and
+ * re-populate cleanly.
+ */
+export const SCHEMA_VER = 'cic:v2';
 const DEFAULT_MAX_AGE = 24 * 60 * 60 * 1000; // 24 hours
 export class ClassificationCache {
+    namespace;
     cacheDir;
     maxAge;
     enabled;
     modelFingerprint;
+    backend;
     memoryCache = new Map();
     hits = 0;
     misses = 0;
     constructor(options = {}) {
+        this.namespace = options.namespace ?? 'classifier';
         this.cacheDir = options.cacheDir || path.join(process.cwd(), '.cognium', 'cache');
         this.maxAge = options.maxAge ?? DEFAULT_MAX_AGE;
         this.enabled = options.enabled ?? true;
         this.modelFingerprint = options.modelFingerprint ?? '';
-        if (this.enabled) {
-            this.ensureCacheDir();
-        }
+        this.backend = options.backend ?? makeBackend(this.cacheDir, this.namespace);
     }
     /** Per-phase model identity used in cache key (cognium-ai#151). */
     getModelFingerprint() {
         return this.modelFingerprint;
     }
-    computeKey(content, classifier) {
-        // 3-component key when fingerprint present (cognium-ai#151). When
-        // empty falls through to the prior 2-component shape via the trailing
-        // `'\0' + ''` collapse — bit-identical to ≤2.21.0 only when no
-        // fingerprint is supplied at all, which is the back-compat path.
-        const parts = this.modelFingerprint
-            ? content + '\0' + classifier + '\0' + this.modelFingerprint
-            : content + '\0' + classifier;
-        return crypto.createHash('sha256').update(parts).digest('hex');
+    /** Backend kind identifier (`local-fs` | `memory` | `r2`). Observability. */
+    getBackendKind() {
+        return this.backend.kind;
     }
-    getCachePath(key) {
-        const subdir = key.substring(0, 2);
-        return path.join(this.cacheDir, subdir, `${key}.json`);
+    /** Logical namespace (`tree` | `verify` | `discovery`). Observability. */
+    getNamespace() {
+        return this.namespace;
     }
-    ensureCacheDir() {
-        if (!fs.existsSync(this.cacheDir)) {
-            fs.mkdirSync(this.cacheDir, { recursive: true });
+    computeDigest(content, classifier, coordinate) {
+        // Coordinate hash-prefix only applies to the `tree` namespace.
+        // Including it in the digest (not just the path) is what guarantees
+        // a fileSHA collision across packages still produces distinct keys.
+        const coordPart = (this.namespace === 'tree' && coordinate)
+            ? coordinateSegments(coordinate).hashPrefix
+            : '';
+        const parts = SCHEMA_VER
+            + '\0' + this.namespace
+            + '\0' + classifier
+            + '\0' + content
+            + '\0' + this.modelFingerprint
+            + '\0' + coordPart;
+        return crypto.createHash('sha256').update(parts).digest('hex');
+    }
+    toCacheKey(digest, coordinate) {
+        const key = { namespace: this.namespace, digest };
+        if (this.namespace === 'tree' && coordinate) {
+            key.coordinate = coordinate;
         }
+        return key;
     }
     isValid(entry) {
+        if (entry.schemaVer !== SCHEMA_VER)
+            return false;
         return (Date.now() - entry.timestamp) <= this.maxAge;
     }
-    get(content, classifier) {
+    async get(content, classifier, opts) {
         if (!this.enabled)
             return null;
-        const key = this.computeKey(content, classifier);
-        // Memory cache
-        const memEntry = this.memoryCache.get(key);
+        const digest = this.computeDigest(content, classifier, opts?.coordinate);
+        const cacheKey = this.toCacheKey(digest, opts?.coordinate);
+        // Memory cache (process-local hot path)
+        const memEntry = this.memoryCache.get(digest);
         if (memEntry && this.isValid(memEntry)) {
             this.hits++;
             return memEntry.result;
         }
-        // Disk cache
-        const cachePath = this.getCachePath(key);
+        // Backend (disk / R2 / etc.)
         try {
-            if (fs.existsSync(cachePath)) {
-                const data = fs.readFileSync(cachePath, 'utf-8');
-                const entry = JSON.parse(data);
+            const raw = await this.backend.get(cacheKey);
+            if (raw !== null) {
+                const entry = JSON.parse(raw);
                 if (this.isValid(entry)) {
-                    this.memoryCache.set(key, entry);
+                    this.memoryCache.set(digest, entry);
                     this.hits++;
                     return entry.result;
                 }
-                else {
-                    fs.unlinkSync(cachePath);
+                // Stale OR schemaVer-mismatch — drop. We don't await the deletion
+                // to keep the read path fast.
+                if (this.backend.delete) {
+                    void this.backend.delete(cacheKey);
                 }
             }
         }
         catch {
-            // Ignore read errors
+            // Decode / I/O error: treat as miss.
         }
         this.misses++;
         return null;
     }
-    set(content, classifier, result) {
+    async set(content, classifier, result, opts) {
         if (!this.enabled)
             return;
-        const key = this.computeKey(content, classifier);
-        const entry = { key, timestamp: Date.now(), result };
-        this.memoryCache.set(key, entry);
-        // #31: atomic write (tmp + rename) so concurrent processes don't
-        // corrupt each other's cache files. Same pattern as file-cache.ts.
-        const cachePath = this.getCachePath(key);
-        const cacheSubdir = path.dirname(cachePath);
-        const tmpPath = `${cachePath}.tmp.${process.pid}.${Math.random().toString(36).slice(2, 8)}`;
+        const digest = this.computeDigest(content, classifier, opts?.coordinate);
+        const cacheKey = this.toCacheKey(digest, opts?.coordinate);
+        const entry = {
+            schemaVer: SCHEMA_VER,
+            key: digest,
+            timestamp: Date.now(),
+            result,
+        };
+        this.memoryCache.set(digest, entry);
         try {
-            if (!fs.existsSync(cacheSubdir)) {
-                fs.mkdirSync(cacheSubdir, { recursive: true });
-            }
-            fs.writeFileSync(tmpPath, JSON.stringify(entry));
-            fs.renameSync(tmpPath, cachePath);
+            await this.backend.set(cacheKey, JSON.stringify(entry));
         }
         catch {
-            try {
-                fs.unlinkSync(tmpPath);
-            }
-            catch { /* ignore */ }
+            // Cache write is best-effort; never fail the caller.
         }
     }
-    has(content, classifier) {
-        return this.get(content, classifier) !== null;
+    async has(content, classifier, opts) {
+        return (await this.get(content, classifier, opts)) !== null;
     }
-    clear() {
+    async clear() {
         this.memoryCache.clear();
         this.hits = 0;
         this.misses = 0;
-        if (fs.existsSync(this.cacheDir)) {
+        if (this.backend.clear) {
             try {
-                fs.rmSync(this.cacheDir, { recursive: true, force: true });
-                this.ensureCacheDir();
-            }
-            catch {
-                // Ignore errors
+                await this.backend.clear();
             }
+            catch { /* ignore */ }
         }
     }
-    stats() {
+    async stats() {
         let diskEntries = 0;
-        if (fs.existsSync(this.cacheDir)) {
+        if (this.backend.count) {
             try {
-                const subdirs = fs.readdirSync(this.cacheDir);
-                for (const subdir of subdirs) {
-                    const subdirPath = path.join(this.cacheDir, subdir);
-                    try {
-                        if (fs.statSync(subdirPath).isDirectory()) {
-                            diskEntries += fs.readdirSync(subdirPath).length;
-                        }
-                    }
-                    catch {
-                        // Skip unreadable subdirs
-                    }
-                }
-            }
-            catch {
-                // Ignore
+                diskEntries = await this.backend.count();
             }
+            catch { /* ignore */ }
         }
         const total = this.hits + this.misses;
         return {
+            namespace: this.namespace,
             memoryEntries: this.memoryCache.size,
             diskEntries,
             hitRate: total > 0 ? this.hits / total : 0,
+            backend: this.backend.kind,
         };
     }
 }
-// Singleton — keyed on cacheDir + modelFingerprint so two scans with
-// different per-phase models in the same process get distinct caches
-// (cognium-ai#151). Without the fingerprint dimension, switching
-// `LLM_DISCOVERY_MODEL` between scans would silently reuse the first
-// scan's classifier results.
-let classificationCache = null;
-export function getClassificationCache(options) {
-    const wantFingerprint = options?.modelFingerprint ?? '';
-    if (!classificationCache || classificationCache.getModelFingerprint() !== wantFingerprint) {
-        classificationCache = new ClassificationCache(options);
+/**
+ * Singleton table — keyed on (namespace, modelFingerprint) so two scans
+ * with different per-phase models in the same process get distinct
+ * caches (cognium-ai#151).
+ */
+const singletons = new Map();
+export function getClassificationCache(options = {}) {
+    const fp = options.modelFingerprint ?? '';
+    const namespace = options.namespace ?? 'classifier';
+    const slot = `${namespace}\0${fp}`;
+    let existing = singletons.get(slot);
+    if (!existing) {
+        existing = new ClassificationCache(options);
+        singletons.set(slot, existing);
     }
-    return classificationCache;
+    return existing;
 }
 export function resetClassificationCache() {
-    classificationCache = null;
+    singletons.clear();
 }
 //# sourceMappingURL=classification-cache.js.map

package/dist/cache/classification-cache.js.map

@@ -1 +1 @@
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package/dist/cache/coordinate.d.ts

@@ -0,0 +1,59 @@
+/**
+ * Package coordinate detection for cache path layout.
+ *
+ * The tree-cache backend (R2 / local-fs) uses the coordinate to build a
+ * package-aware key layout:
+ *
+ *   tree/<ecosystem>/<name>@<version>/<4hex>/<sha>.json   (published coords)
+ *   tree/_local/<name>@<version>/<4hex>/<sha>.json        (repo-root manifest)
+ *   tree/_unowned/<4hex>/<sha>.json                       (no coordinate)
+ *
+ * Coordinate is resolved ONCE per scan from the repo root. We deliberately
+ * keep the extractor minimal (only manifest files we can parse with zero
+ * deps) so it can be folded into hot paths without measurable overhead.
+ *
+ * What's intentionally *not* in scope here:
+ * - per-file coordinate from `node_modules/<pkg>/...` paths (deferred until
+ *   we actually scan transitive deps)
+ * - lockfile-derived coordinates
+ * - Maven `<artifactId>` resolution from a multi-module reactor
+ *
+ * For the first-party github sweep use case, every file in a repo shares
+ * the same coordinate (or falls through to `_unowned`), which is exactly
+ * what we want for cross-runner cache sharing.
+ */
+export type Ecosystem = 'npm' | 'maven' | 'pypi' | 'cargo' | 'go' | '_local' | '_unowned';
+export interface PackageCoordinate {
+    ecosystem: Ecosystem;
+    /** Package name in its ecosystem's canonical form (lower-case, normalized). */
+    name: string;
+    /** Resolved version string, or `'HEAD'` for `_local`. */
+    version: string;
+}
+/**
+ * The sentinel coordinate emitted when the repo has no detectable manifest.
+ *
+ * Tree-cache content still gets cached, just under `_unowned/<4hex>/<sha>`.
+ * Re-using the singleton means the path layout is constant for un-coord'd
+ * scans and avoids per-file object allocation.
+ */
+export declare const UNOWNED: PackageCoordinate;
+/**
+ * Render the coordinate as a stable path prefix and a stable hash prefix.
+ *
+ * `pathSegment` is what the backend uses to build the R2 / local-fs key.
+ * `hashPrefix` is what cache-key composers fold into the content hash so
+ * the SHA itself encodes the coordinate (no collision across packages).
+ */
+export declare function coordinateSegments(c: PackageCoordinate): {
+    pathSegment: string;
+    hashPrefix: string;
+};
+/**
+ * Detect a package coordinate from the repo root manifest files.
+ *
+ * Synchronous because it runs once per scan at scanner entry and the
+ * disk reads are tiny (`package.json` / `pom.xml`).
+ */
+export declare function detectCoordinate(repoRoot: string): PackageCoordinate;
+//# sourceMappingURL=coordinate.d.ts.map

package/dist/cache/coordinate.d.ts.map

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