npm - circle-ir-ai - Versions diffs - 1.14.0 → 1.15.0 - Mend

circle-ir-ai 1.14.0 → 1.15.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (30) hide show

package/CHANGELOG.md +19 -0
package/dist/cli/args.d.ts +1 -0
package/dist/cli/args.d.ts.map +1 -1
package/dist/cli/args.js +11 -0
package/dist/cli/args.js.map +1 -1
package/dist/cli/commands/generate-spec.d.ts.map +1 -1
package/dist/cli/commands/generate-spec.js +49 -28
package/dist/cli/commands/generate-spec.js.map +1 -1
package/dist/cli/commands/trust.d.ts +2 -1
package/dist/cli/commands/trust.d.ts.map +1 -1
package/dist/cli/commands/trust.js +34 -7
package/dist/cli/commands/trust.js.map +1 -1
package/dist/cli/config.d.ts +58 -0
package/dist/cli/config.d.ts.map +1 -1
package/dist/cli/config.js +76 -0
package/dist/cli/config.js.map +1 -1
package/dist/cli/index.js +0 -0
package/dist/index.d.ts +2 -0
package/dist/index.d.ts.map +1 -1
package/dist/index.js +4 -0
package/dist/index.js.map +1 -1
package/dist/specifica/evidence-aggregator.d.ts.map +1 -1
package/dist/specifica/evidence-aggregator.js +16 -1
package/dist/specifica/evidence-aggregator.js.map +1 -1
package/dist/specifica/evidence-extractor.js +7 -2
package/dist/specifica/evidence-extractor.js.map +1 -1
package/dist/specifica/spec-generator.d.ts.map +1 -1
package/dist/specifica/spec-generator.js +115 -38
package/dist/specifica/spec-generator.js.map +1 -1
package/package.json +2 -2

package/CHANGELOG.md CHANGED Viewed

@@ -5,6 +5,25 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+## [1.15.0] - 2026-03-30
+### Added
+- **cognium.config.json support**: Project-level configuration for pass disabling, options, and trust pass filtering
+  - `loadCogniumConfig()` — finds and parses `cognium.config.json` (walks up directories)
+  - `convertCogniumConfigToPassOptions()` — converts config to circle-ir `PassOptions` + `disabledPasses`
+  - Exported `CogniumConfig`, `Suppression` types from package index
+  - CLI `--disable-pass` flag for comma-separated pass disabling (e.g., `--disable-pass god-class,naming-convention`)
+  - Trust command: loads config, filters trust passes via `trust.disabledPasses`, forwards SAST pass options to `analyze()`
+- 24 new tests in `tests/config-cognium.test.ts`
+### Changed
+- **circle-ir dependency upgrade**: ^3.14.0 → ^3.16.0 (resolves to 3.16.3)
+  - 3.15.0: Enhanced null-deref, n-plus-one, sink-filter; 40 new tests
+  - 3.16.0: PassOptions API, disabledPasses runtime config, cognium.config.json project-level configuration
+  - 3.16.1-3.16.3: Bug fixes (infinite-loop for iterator-based loops, project-level pass filtering)
 ## [1.14.0] - 2026-03-28
 ### Added

package/dist/cli/args.d.ts CHANGED Viewed

@@ -46,6 +46,7 @@ export interface CliArgs {
     verification?: boolean;
     minConfidence?: number;
     minSeverity?: 'critical' | 'high' | 'medium' | 'low' | 'info';
+    disablePass: string[];
 }
 /**
  * Parse command-line arguments.

package/dist/cli/args.d.ts.map CHANGED Viewed

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package/dist/cli/args.js CHANGED Viewed

@@ -42,6 +42,7 @@ export function parseArgs(argv) {
         specSkip: false,
         specNoBackup: false,
         specDir: null,
+        disablePass: [],
     };
     let i = 0;
     while (i < argv.length) {
@@ -313,6 +314,13 @@ export function parseArgs(argv) {
                 }
                 args.specDir = argv[i];
                 break;
+            case '--disable-pass':
+                i++;
+                if (i >= argv.length) {
+                    throw new Error('Missing value for --disable-pass');
+                }
+                args.disablePass.push(...argv[i].split(',').map(s => s.trim()).filter(Boolean));
+                break;
             default:
                 // Check for --key=value style
                 if (arg.startsWith('--format=')) {
@@ -440,6 +448,9 @@ export function parseArgs(argv) {
                 else if (arg.startsWith('--spec=')) {
                     args.specDir = arg.substring(7);
                 }
+                else if (arg.startsWith('--disable-pass=')) {
+                    args.disablePass.push(...arg.substring(15).split(',').map(s => s.trim()).filter(Boolean));
+                }
                 else if (arg.startsWith('-')) {
                     throw new Error(`Unknown option: ${arg}`);
                 }

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package/dist/cli/commands/generate-spec.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"generate-spec.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/generate-spec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;~~AASH~~,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAE1C;;GAEG;AACH,wBAAsB,mBAAmB,CAAC,IAAI,EAAE,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,~~CA8DxE~~"}
1	+ {"version":3,"file":"generate-spec.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/generate-spec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAWH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAE1C;;GAEG;AACH,wBAAsB,mBAAmB,CAAC,IAAI,EAAE,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,CAiFxE"}

package/dist/cli/commands/generate-spec.js CHANGED Viewed

@@ -4,15 +4,16 @@
  * Generate Specifica-format specifications from existing code.
  */
 import * as fs from 'fs';
-import { generateSpecifica, } from '../../specifica/index.js';
+import { initAnalyzer } from 'circle-ir';
+import { generateSpecifica, generateSpecificaForDirectory, } from '../../specifica/index.js';
 /**
  * Execute Specifica generation command.
  */
 export async function executeGenerateSpec(args) {
     const targetPath = args.file || args.directory;
     if (!targetPath) {
-        console.error('Error: No file specified');
-        console.error('Usage: circle-ir generate-spec <file> [options]');
+        console.error('Error: No path specified');
+        console.error('Usage: circle-ir generate-spec <file|directory> [options]');
         return 1;
     }
     if (!fs.existsSync(targetPath)) {
@@ -20,41 +21,61 @@ export async function executeGenerateSpec(args) {
         return 1;
     }
     const isDirectory = fs.statSync(targetPath).isDirectory();
-    if (isDirectory) {
-        console.error('Error: Directory analysis not yet supported (Phase 2)');
-        console.error('Please specify a single file for now.');
-        return 1;
-    }
     if (!args.quiet) {
         console.error(`Generating Specifica specification for ${targetPath}...`);
     }
     const options = {
         specModel: args.specModel || 'cognium/gpt-oss-120b',
         overwrite: args.specOverwrite,
+        quiet: args.quiet,
     };
+    // Initialize WASM analyzer
+    await initAnalyzer();
     try {
-        const result = await generateSpecifica(targetPath, options);
-        if (!args.quiet) {
-            console.error('');
-            console.error('✓ Specification generated successfully!');
-            console.error('');
-            console.error(`Feature:  ${result.featureName}`);
-            console.error(`Output:   ${result.outputPath}/spec.md`);
-            console.error('');
-            console.error('⚠️  Review required: This specification was automatically generated.');
-            console.error('Please review and refine before using.');
-        }
-        // Output JSON if requested
-        if (args.format === 'json') {
-            const output = JSON.stringify(result, null, 2);
-            if (args.output) {
-                fs.writeFileSync(args.output, output);
-                if (!args.quiet) {
-                    console.error(`JSON output written to ${args.output}`);
+        if (isDirectory) {
+            const results = await generateSpecificaForDirectory(targetPath, options);
+            if (!args.quiet) {
+                console.error('');
+                console.error(`✓ Generated ${results.length} specification(s)`);
+                for (const result of results) {
+                    console.error(`  - ${result.featureName}: ${result.outputPath}/spec.md`);
+                }
+                console.error('');
+                console.error('Review required: specifications were automatically generated.');
+            }
+            if (args.format === 'json') {
+                const output = JSON.stringify(results, null, 2);
+                if (args.output) {
+                    fs.writeFileSync(args.output, output);
+                    if (!args.quiet)
+                        console.error(`JSON output written to ${args.output}`);
                 }
+                else {
+                    console.log(output);
+                }
+            }
+        }
+        else {
+            const result = await generateSpecifica(targetPath, options);
+            if (!args.quiet) {
+                console.error('');
+                console.error('✓ Specification generated successfully!');
+                console.error('');
+                console.error(`Feature:  ${result.featureName}`);
+                console.error(`Output:   ${result.outputPath}/spec.md`);
+                console.error('');
+                console.error('Review required: This specification was automatically generated.');
             }
-            else {
-                console.log(output);
+            if (args.format === 'json') {
+                const output = JSON.stringify(result, null, 2);
+                if (args.output) {
+                    fs.writeFileSync(args.output, output);
+                    if (!args.quiet)
+                        console.error(`JSON output written to ${args.output}`);
+                }
+                else {
+                    console.log(output);
+                }
             }
         }
         return 0;

package/dist/cli/commands/generate-spec.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"generate-spec.js","sourceRoot":"","sources":["../../../src/cli/commands/generate-spec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AAEzB,OAAO,EAAE,YAAY,EAAE,MAAM,WAAW,CAAC;AACzC,OAAO,EACL,iBAAiB,EACjB,6BAA6B,GAG9B,MAAM,0BAA0B,CAAC;AAGlC;;GAEG;AACH,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,IAAa;IACrD,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,SAAS,CAAC;IAE/C,IAAI,CAAC,UAAU,EAAE,CAAC;QAChB,OAAO,CAAC,KAAK,CAAC,0BAA0B,CAAC,CAAC;QAC1C,OAAO,CAAC,KAAK,CAAC,2DAA2D,CAAC,CAAC;QAC3E,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC/B,OAAO,CAAC,KAAK,CAAC,0BAA0B,UAAU,EAAE,CAAC,CAAC;QACtD,OAAO,CAAC,CAAC;IACX,CAAC;IAED,MAAM,WAAW,GAAG,EAAE,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC,WAAW,EAAE,CAAC;IAE1D,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;QAChB,OAAO,CAAC,KAAK,CAAC,0CAA0C,UAAU,KAAK,CAAC,CAAC;IAC3E,CAAC;IAED,MAAM,OAAO,GAAqB;QAChC,SAAS,EAAE,IAAI,CAAC,SAAS,IAAI,sBAAsB;QACnD,SAAS,EAAE,IAAI,CAAC,aAAa;QAC7B,KAAK,EAAE,IAAI,CAAC,KAAK;KAClB,CAAC;IAEF,2BAA2B;IAC3B,MAAM,YAAY,EAAE,CAAC;IAErB,IAAI,CAAC;QACH,IAAI,WAAW,EAAE,CAAC;YAChB,MAAM,OAAO,GAAG,MAAM,6BAA6B,CAAC,UAAU,EAAE,OAAO,CAAC,CAAC;YAEzE,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;gBAChB,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAClB,OAAO,CAAC,KAAK,CAAC,eAAe,OAAO,CAAC,MAAM,mBAAmB,CAAC,CAAC;gBAChE,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;oBAC7B,OAAO,CAAC,KAAK,CAAC,OAAO,MAAM,CAAC,WAAW,KAAK,MAAM,CAAC,UAAU,UAAU,CAAC,CAAC;gBAC3E,CAAC;gBACD,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAClB,OAAO,CAAC,KAAK,CAAC,+DAA+D,CAAC,CAAC;YACjF,CAAC;YAED,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,EAAE,CAAC;gBAC3B,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;gBAChD,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;oBAChB,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;oBACtC,IAAI,CAAC,IAAI,CAAC,KAAK;wBAAE,OAAO,CAAC,KAAK,CAAC,0BAA0B,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;gBAC1E,CAAC;qBAAM,CAAC;oBACN,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;gBACtB,CAAC;YACH,CAAC;QACH,CAAC;aAAM,CAAC;YACN,MAAM,MAAM,GAAG,MAAM,iBAAiB,CAAC,UAAU,EAAE,OAAO,CAAC,CAAC;YAE5D,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;gBAChB,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAClB,OAAO,CAAC,KAAK,CAAC,yCAAyC,CAAC,CAAC;gBACzD,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAClB,OAAO,CAAC,KAAK,CAAC,aAAa,MAAM,CAAC,WAAW,EAAE,CAAC,CAAC;gBACjD,OAAO,CAAC,KAAK,CAAC,aAAa,MAAM,CAAC,UAAU,UAAU,CAAC,CAAC;gBACxD,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAClB,OAAO,CAAC,KAAK,CAAC,kEAAkE,CAAC,CAAC;YACpF,CAAC;YAED,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,EAAE,CAAC;gBAC3B,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;gBAC/C,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;oBAChB,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;oBACtC,IAAI,CAAC,IAAI,CAAC,KAAK;wBAAE,OAAO,CAAC,KAAK,CAAC,0BAA0B,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;gBAC1E,CAAC;qBAAM,CAAC;oBACN,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;gBACtB,CAAC;YACH,CAAC;QACH,CAAC;QAED,OAAO,CAAC,CAAC;IACX,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,KAAK,CAAC,QAAQ,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QACxE,OAAO,CAAC,CAAC;IACX,CAAC;AACH,CAAC"}

package/dist/cli/commands/trust.d.ts CHANGED Viewed

@@ -9,6 +9,7 @@
  *   circle-ir trust <path> --format json
  *   circle-ir trust <path> --format badge -o trust-badge.svg
  */
+import { type AnalyzerOptions } from 'circle-ir';
 import type { CliArgs } from '../args.js';
 import { type TrustPassResult } from '../../trust/types.js';
 import type { TrustScoreResult } from '../../trust/types.js';
@@ -17,6 +18,6 @@ export interface TrustAnalysisResult {
     trustResult: TrustScoreResult;
     totalDuration: number;
 }
-export declare function runTrustAnalysis(targetPath: string, quiet: boolean): Promise<TrustAnalysisResult>;
+export declare function runTrustAnalysis(targetPath: string, quiet: boolean, analyzerOptions?: AnalyzerOptions, trustDisabledPasses?: string[]): Promise<TrustAnalysisResult>;
 export declare function executeTrust(args: CliArgs): Promise<number>;
 //# sourceMappingURL=trust.d.ts.map

package/dist/cli/commands/trust.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"trust.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/trust.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAIH,OAAO,EAAwC,KAAK,eAAe,EAAE,MAAM,WAAW,CAAC;AACvF,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAE1C,OAAO,EACL,KAAK,eAAe,EAErB,MAAM,sBAAsB,CAAC;AA4T9B,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,sBAAsB,CAAC;AAE7D,MAAM,WAAW,mBAAmB;IAClC,WAAW,EAAE,eAAe,EAAE,CAAC;IAC/B,WAAW,EAAE,gBAAgB,CAAC;IAC9B,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,wBAAsB,gBAAgB,CACpC,UAAU,EAAE,MAAM,EAClB,KAAK,EAAE,OAAO,EACd,eAAe,CAAC,EAAE,eAAe,EACjC,mBAAmB,CAAC,EAAE,MAAM,EAAE,GAC7B,OAAO,CAAC,mBAAmB,CAAC,CA2D9B;AAMD,wBAAsB,YAAY,CAAC,IAAI,EAAE,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,CAmIjE"}

package/dist/cli/commands/trust.js CHANGED Viewed

@@ -12,6 +12,7 @@
 import * as fs from 'fs';
 import * as path from 'path';
 import { initAnalyzer, analyze } from 'circle-ir';
+import { loadCogniumConfig, convertCogniumConfigToPassOptions } from '../config.js';
 // Import all trust passes
 import { hardcodedSecretsPass } from '../../trust/passes/hardcoded-secrets.js';
 import { licenseCompliancePass } from '../../trust/passes/license-compliance.js';
@@ -254,12 +255,12 @@ function collectSourceFiles(dir) {
     }
     return results;
 }
-async function runCircleIRAnalysis(files, quiet) {
+async function runCircleIRAnalysis(files, quiet, analyzerOptions) {
     const results = [];
     for (const file of files) {
         try {
             const content = fs.readFileSync(file.path, 'utf-8');
-            const ir = await analyze(content, path.basename(file.path), file.language);
+            const ir = await analyze(content, path.basename(file.path), file.language, analyzerOptions);
             results.push(ir);
         }
         catch {
@@ -268,7 +269,7 @@ async function runCircleIRAnalysis(files, quiet) {
     }
     return results;
 }
-export async function runTrustAnalysis(targetPath, quiet) {
+export async function runTrustAnalysis(targetPath, quiet, analyzerOptions, trustDisabledPasses) {
     const overallStart = Date.now();
     // Step 1: Initialize circle-ir analyzer
     if (!quiet) {
@@ -280,13 +281,20 @@ export async function runTrustAnalysis(targetPath, quiet) {
     if (!quiet) {
         console.error(`  Analyzing ${sourceFiles.length} source file(s) with CircleIR...`);
     }
-    const circleIRResults = await runCircleIRAnalysis(sourceFiles, quiet);
+    const circleIRResults = await runCircleIRAnalysis(sourceFiles, quiet, analyzerOptions);
     if (!quiet) {
         console.error(`  CircleIR analysis complete: ${circleIRResults.length} file(s) analyzed`);
     }
-    // Step 3: Run all trust passes (forwarding CircleIR to eligible passes)
+    // Step 3: Filter trust passes based on config/CLI disable list
+    const activePasses = trustDisabledPasses && trustDisabledPasses.length > 0
+        ? TRUST_PASSES.filter(p => !trustDisabledPasses.includes(p.name))
+        : TRUST_PASSES;
+    if (!quiet && trustDisabledPasses && trustDisabledPasses.length > 0) {
+        console.error(`  Disabled trust passes: ${trustDisabledPasses.join(', ')}`);
+    }
+    // Step 4: Run active trust passes (forwarding CircleIR to eligible passes)
     const passResults = [];
-    for (const pass of TRUST_PASSES) {
+    for (const pass of activePasses) {
         if (!quiet) {
             console.error(`  [${pass.name}] running...`);
         }
@@ -323,8 +331,27 @@ export async function executeTrust(args) {
     if (!args.quiet) {
         console.error(`Running trust score analysis on ${targetPath}...`);
     }
+    // Load cognium.config.json and build analyzer options
+    const cogniumConfig = loadCogniumConfig(args.config || undefined, targetPath);
+    let analyzerOptions;
+    let trustDisabledPasses = [];
+    if (cogniumConfig) {
+        const { passOptions, disabledPasses } = convertCogniumConfigToPassOptions(cogniumConfig);
+        trustDisabledPasses = cogniumConfig.trust?.disabledPasses || [];
+        if (Object.keys(passOptions).length > 0 || disabledPasses.length > 0) {
+            analyzerOptions = { passOptions, disabledPasses };
+        }
+    }
+    // Merge --disable-pass CLI flag
+    if (args.disablePass.length > 0) {
+        if (!analyzerOptions)
+            analyzerOptions = {};
+        const existing = analyzerOptions.disabledPasses || [];
+        analyzerOptions.disabledPasses = [...new Set([...existing, ...args.disablePass])];
+        trustDisabledPasses = [...new Set([...trustDisabledPasses, ...args.disablePass])];
+    }
     try {
-        const { passResults, trustResult, totalDuration } = await runTrustAnalysis(targetPath, args.quiet === true);
+        const { passResults, trustResult, totalDuration } = await runTrustAnalysis(targetPath, args.quiet === true, analyzerOptions, trustDisabledPasses);
         const compositeScore = trustResult.score;
         const tier = trustResult.tier;
         // Output based on format

package/dist/cli/commands/trust.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/cli/config.d.ts CHANGED Viewed

@@ -100,4 +100,62 @@ export declare function loadConfig(configPath: string | null, startDir?: string)
  * Create an example config file.
  */
 export declare function createExampleConfig(): string;
+import type { PassOptions } from 'circle-ir';
+/**
+ * Suppression entry to exclude specific findings.
+ */
+export interface Suppression {
+    /** Pass name to suppress (e.g., 'naming-convention', 'unbounded-collection') */
+    pass: string;
+    /** File path (relative or absolute) — if omitted, applies to all files */
+    file?: string;
+    /** Specific line number — if omitted, applies to all lines in the file */
+    line?: number;
+    /** Reason for suppression (for documentation) */
+    reason?: string;
+}
+/**
+ * cognium.config.json schema — shared with cognium and cognium-ai CLIs.
+ */
+export interface CogniumConfig {
+    /** Config version for future compatibility */
+    version?: string;
+    /** Glob patterns to include */
+    include?: string[];
+    /** Glob patterns to exclude */
+    exclude?: string[];
+    /** Pass-specific options (passed to circle-ir via analyze() 4th arg) */
+    passes?: {
+        [passName: string]: boolean | {
+            enabled?: boolean;
+            threshold?: number;
+            skipPatterns?: string[];
+            enforceIPrefix?: boolean;
+            [key: string]: unknown;
+        };
+    };
+    /** Trust-specific configuration */
+    trust?: {
+        /** Trust passes to skip (e.g., 'god-class', 'naming-convention') */
+        disabledPasses?: string[];
+    };
+    /** Findings to suppress */
+    suppressions?: Suppression[];
+    /** Minimum severity filter */
+    severity?: string;
+    /** Category filter */
+    categories?: string[];
+}
+/**
+ * Load CogniumConfig from cognium.config.json.
+ * Searches up from startDir or uses explicit configPath.
+ */
+export declare function loadCogniumConfig(configPath?: string, startDir?: string): CogniumConfig | null;
+/**
+ * Convert CogniumConfig passes to circle-ir PassOptions and disabledPasses.
+ */
+export declare function convertCogniumConfigToPassOptions(config: CogniumConfig): {
+    passOptions: PassOptions;
+    disabledPasses: string[];
+};
 //# sourceMappingURL=config.d.ts.map

package/dist/cli/config.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/cli/config.js CHANGED Viewed

@@ -304,4 +304,80 @@ overrides:
     CWE-89: critical  # Make SQL injection critical
 `;
 }
+/**
+ * Load CogniumConfig from cognium.config.json.
+ * Searches up from startDir or uses explicit configPath.
+ */
+export function loadCogniumConfig(configPath, startDir) {
+    if (configPath) {
+        if (!fs.existsSync(configPath))
+            return null;
+        try {
+            return JSON.parse(fs.readFileSync(configPath, 'utf-8'));
+        }
+        catch (err) {
+            console.error(`Warning: Failed to parse ${configPath}: ${err}`);
+            return null;
+        }
+    }
+    // Walk up directories to find cognium.config.json
+    let dir = path.resolve(startDir || process.cwd());
+    const root = path.parse(dir).root;
+    while (dir !== root) {
+        const candidate = path.join(dir, 'cognium.config.json');
+        if (fs.existsSync(candidate)) {
+            try {
+                return JSON.parse(fs.readFileSync(candidate, 'utf-8'));
+            }
+            catch (err) {
+                console.error(`Warning: Failed to parse ${candidate}: ${err}`);
+                return null;
+            }
+        }
+        dir = path.dirname(dir);
+    }
+    return null;
+}
+/**
+ * Convert CogniumConfig passes to circle-ir PassOptions and disabledPasses.
+ */
+export function convertCogniumConfigToPassOptions(config) {
+    const passOptions = {};
+    const disabledPasses = [];
+    if (!config.passes) {
+        return { passOptions, disabledPasses };
+    }
+    for (const [passName, passConfig] of Object.entries(config.passes)) {
+        if (passConfig === false) {
+            disabledPasses.push(passName);
+            continue;
+        }
+        if (passConfig === true)
+            continue;
+        if (typeof passConfig === 'object') {
+            if (passConfig.enabled === false) {
+                disabledPasses.push(passName);
+                continue;
+            }
+            switch (passName) {
+                case 'dependency-fan-out':
+                    if (passConfig.threshold !== undefined) {
+                        passOptions.dependencyFanOut = { threshold: passConfig.threshold };
+                    }
+                    break;
+                case 'unbounded-collection':
+                    if (passConfig.skipPatterns !== undefined) {
+                        passOptions.unboundedCollection = { skipPatterns: passConfig.skipPatterns };
+                    }
+                    break;
+                case 'naming-convention':
+                    if (passConfig.enforceIPrefix !== undefined) {
+                        passOptions.namingConvention = { enforceIPrefix: passConfig.enforceIPrefix };
+                    }
+                    break;
+            }
+        }
+    }
+    return { passOptions, disabledPasses };
+}
 //# sourceMappingURL=config.js.map

package/dist/cli/config.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/cli/index.js CHANGED Viewed

File without changes

package/dist/index.d.ts CHANGED Viewed

@@ -38,6 +38,8 @@ export { calculateQualityScore as runQualityScore, formatQualityReport, DEFAULT_
 export { serializeToCGS, serializeMultipleToCGS, type CGSOptions, } from './llm/cgs-serializer.js';
 export { BatchClassifier, batchClassify, type ClassifierDefinition, type BatchClassifierOptions, type BatchClassifierResult, type FileClassification, } from './llm/batch-classifier.js';
 export { docParamMismatchPass, returnTypeMismatchPass, docWrongBehaviorPass, inconsistentErrorHandlingPass, magicNumbersPass, type DocPatternPassOptions, } from './llm/doc-pattern-passes.js';
+export { analyzeComponents, enrichComponent, enrichComponents, clusterComponents, type Component, type SemanticEnrichment, type EnrichedComponent, type FeatureCluster, type ComponentFlow, type ArchitectureInsights, type ClusteringResult, type ComponentAnalysisOptions, type ComponentAnalysisResult, } from './components/index.js';
 export { summarizeFunction, summarizeAllFunctions, summarizeModule, detectRole, type FunctionEffect, type SideEffect, type SideEffectKind, type ModuleSummary, type ModuleRole, type UnderstandOptions, type UnderstandResult, } from './understand/index.js';
 export { analyzeSpecGap, parseSpecMd, type SpecGapResult, type SpecGapOptions, type RequirementMatch, type UncoveredRequirement, type UndocumentedBehavior, } from './spec-gap/index.js';
+export { loadCogniumConfig, convertCogniumConfigToPassOptions, type CogniumConfig, type Suppression, } from './cli/config.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/index.js CHANGED Viewed

@@ -58,8 +58,12 @@ export { serializeToCGS, serializeMultipleToCGS, } from './llm/cgs-serializer.js
 export { BatchClassifier, batchClassify, } from './llm/batch-classifier.js';
 // Doc/Pattern LLM Passes
 export { docParamMismatchPass, returnTypeMismatchPass, docWrongBehaviorPass, inconsistentErrorHandlingPass, magicNumbersPass, } from './llm/doc-pattern-passes.js';
+// Components (clustering and enrichment)
+export { analyzeComponents, enrichComponent, enrichComponents, clusterComponents, } from './components/index.js';
 // Understand (Semantic Understanding)
 export { summarizeFunction, summarizeAllFunctions, summarizeModule, detectRole, } from './understand/index.js';
 // Spec-Gap Analysis
 export { analyzeSpecGap, parseSpecMd, } from './spec-gap/index.js';
+// CogniumConfig (cognium.config.json support)
+export { loadCogniumConfig, convertCogniumConfigToPassOptions, } from './cli/config.js';
 //# sourceMappingURL=index.js.map

package/dist/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,sCAAsC;AACtC,cAAc,WAAW,CAAC;AAE1B,+BAA+B;AAC/B,OAAO,EACL,WAAW,EACX,cAAc,GAEf,MAAM,oBAAoB,CAAC;AAE5B,OAAO,EACL,eAAe,EACf,gBAAgB,GAGjB,MAAM,iBAAiB,CAAC;AAEzB,aAAa;AACb,OAAO,EACL,gBAAgB,EAChB,mBAAmB,EACnB,UAAU,GAMX,MAAM,qBAAqB,CAAC;AAE7B,eAAe;AACf,OAAO,EACL,kBAAkB,EAClB,qBAAqB,EACrB,eAAe,EACf,mBAAmB,GAKpB,MAAM,uBAAuB,CAAC;AAE/B,iBAAiB;AACjB,OAAO,EACL,iBAAiB,EACjB,uBAAuB,GAIxB,MAAM,0BAA0B,CAAC;AAElC,WAAW;AACX,OAAO,EACL,WAAW,EACX,iBAAiB,GAGlB,MAAM,6BAA6B,CAAC;AAErC,gBAAgB;AAChB,OAAO,EACL,eAAe,EACf,cAAc,EACd,aAAa,EACb,SAAS,EACT,gBAAgB,GASjB,MAAM,0BAA0B,CAAC;AAElC,OAAO,EACL,eAAe,EACf,uBAAuB,EACvB,sBAAsB,EACtB,2BAA2B,GAG5B,MAAM,kCAAkC,CAAC;AAE1C,OAAO,EACL,YAAY,EACZ,eAAe,EACf,SAAS,GAKV,MAAM,kCAAkC,CAAC;AAE1C,sBAAsB;AACtB,OAAO,EACL,gBAAgB,EAChB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,GAQrB,MAAM,sBAAsB,CAAC;AAE9B,kBAAkB;AAClB,OAAO,EACL,aAAa,EACb,cAAc,EACd,eAAe,EACf,kBAAkB,EAClB,eAAe,EACf,gBAAgB,EAChB,qBAAqB,EACrB,qBAAqB,EACrB,oBAAoB,GAOrB,MAAM,wBAAwB,CAAC;AAEhC,eAAe;AACf,OAAO,EACL,qBAAqB,EACrB,oBAAoB,EACpB,gBAAgB,EAChB,kBAAkB,EAClB,eAAe,EACf,sBAAsB,EACtB,6BAA6B,EAC7B,qBAAqB,EACrB,yBAAyB,EACzB,aAAa,EACb,aAAa,GASd,MAAM,yBAAyB,CAAC;AAEjC,iCAAiC;AACjC,OAAO,EACL,eAAe,EACf,kBAAkB,EAClB,uBAAuB,EACvB,0BAA0B,GAI3B,MAAM,oBAAoB,CAAC;AAE5B,eAAe;AACf,OAAO,EACL,WAAW,EACX,iBAAiB,EACjB,aAAa,EACb,kBAAkB,EAClB,gBAAgB,EAChB,wBAAwB,EACxB,aAAa,EACb,WAAW,EACX,aAAa,GAcd,MAAM,yBAAyB,CAAC;AAEjC,6BAA6B;AAC7B,OAAO,EACL,SAAS,EACT,gBAAgB,EAChB,kBAAkB,GAGnB,MAAM,uBAAuB,CAAC;AAE/B,OAAO,EACL,mBAAmB,EACnB,sBAAsB,EACtB,wBAAwB,GAEzB,MAAM,iCAAiC,CAAC;AAEzC,uBAAuB;AACvB,OAAO,EACL,iBAAiB,EACjB,6BAA6B,EAC7B,eAAe,EACf,YAAY,EACZ,kBAAkB,EAClB,eAAe,EACf,UAAU,EACV,mBAAmB,GAQpB,MAAM,sBAAsB,CAAC;AAkB9B,OAAO,EAAE,eAAe,EAAE,mBAAmB,EAAE,0BAA0B,EAAE,MAAM,2BAA2B,CAAC;AAC7G,OAAO,EAAE,kBAAkB,EAAE,MAAM,4BAA4B,CAAC;AAChE,OAAO,EAAE,0BAA0B,EAAE,MAAM,iCAAiC,CAAC;AAC7E,OAAO,EAAE,yBAAyB,EAAE,MAAM,gCAAgC,CAAC;AAC3E,OAAO,EAAE,qBAAqB,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAEpF,yBAAyB;AACzB,OAAO,EACL,cAAc,EACd,sBAAsB,EACtB,kBAAkB,EAClB,mBAAmB,EACnB,cAAc,GAQf,MAAM,oBAAoB,CAAC;AAE5B,8CAA8C;AAC9C,OAAO,EAAE,wBAAwB,EAAE,MAAM,kCAAkC,CAAC;AAC5E,OAAO,EAA0B,iBAAiB,EAAE,8BAA8B,EAAE,MAAM,uBAAuB,CAAC;AAElH,cAAc;AACd,OAAO,EAML,eAAe,EACf,WAAW,EACX,gBAAgB,EAChB,eAAe,EACf,oBAAoB,EAEpB,qBAAqB,EAErB,sBAAsB,EAEtB,mBAAmB,EAEnB,0BAA0B,EAE1B,uBAAuB,EAEvB,wBAAwB,EAExB,oBAAoB,EAEpB,kBAAkB,EAElB,kBAAkB,EAElB,cAAc,EAEd,iBAAiB,EAEjB,mBAAmB,EAEnB,kBAAkB,EAElB,mBAAmB,EAEnB,gBAAgB,EAEhB,iBAAiB,EAEjB,0BAA0B,EAE1B,qBAAqB,EAErB,qBAAqB,EAErB,mBAAmB,EAEnB,eAAe,EAEf,iBAAiB,EAEjB,iBAAiB,EACjB,qBAAqB,EACrB,sBAAsB,EACtB,iBAAiB,EACjB,kBAAkB,EAGlB,mBAAmB,EACnB,sBAAsB,EAGtB,kBAAkB,EAClB,kBAAkB,EAClB,sBAAsB,GAEvB,MAAM,kBAAkB,CAAC;AAE1B,gBAAgB;AAChB,OAAO,EACL,qBAAqB,IAAI,eAAe,EACxC,mBAAmB,EACnB,uBAAuB,EAOvB,cAAc,EACd,mBAAmB,EACnB,oBAAoB,EACpB,6BAA6B,GAC9B,MAAM,oBAAoB,CAAC;AAE5B,iBAAiB;AACjB,OAAO,EACL,cAAc,EACd,sBAAsB,GAEvB,MAAM,yBAAyB,CAAC;AAEjC,mBAAmB;AACnB,OAAO,EACL,eAAe,EACf,aAAa,GAKd,MAAM,2BAA2B,CAAC;AAEnC,yBAAyB;AACzB,OAAO,EACL,oBAAoB,EACpB,sBAAsB,EACtB,oBAAoB,EACpB,6BAA6B,EAC7B,gBAAgB,GAEjB,MAAM,6BAA6B,CAAC;AAErC,yCAAyC;AACzC,OAAO,EACL,iBAAiB,EACjB,eAAe,EACf,gBAAgB,EAChB,iBAAiB,GAUlB,MAAM,uBAAuB,CAAC;AAE/B,sCAAsC;AACtC,OAAO,EACL,iBAAiB,EACjB,qBAAqB,EACrB,eAAe,EACf,UAAU,GAQX,MAAM,uBAAuB,CAAC;AAE/B,oBAAoB;AACpB,OAAO,EACL,cAAc,EACd,WAAW,GAMZ,MAAM,qBAAqB,CAAC;AAE7B,8CAA8C;AAC9C,OAAO,EACL,iBAAiB,EACjB,iCAAiC,GAGlC,MAAM,iBAAiB,CAAC"}

package/dist/specifica/evidence-aggregator.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"evidence-aggregator.d.ts","sourceRoot":"","sources":["../../src/specifica/evidence-aggregator.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAE/D;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,cAAc,GAAG,YAAY,CAyCvE;~~AAqGD~~;;GAEG;AACH,wBAAgB,sBAAsB,CACpC,OAAO,EAAE,cAAc,EACvB,UAAU,EAAE,YAAY,GACvB,MAAM,CAoCR;AAED;;GAEG;AACH,wBAAgB,6BAA6B,CAAC,OAAO,EAAE,cAAc,GAAG;IACtE,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,QAAQ,GAAG,MAAM,CAAA;KAAE,CAAC,CAAC;IAC3E,QAAQ,EAAE;QACR,WAAW,EAAE,MAAM,EAAE,CAAC;QACtB,QAAQ,EAAE,MAAM,EAAE,CAAC;QACnB,YAAY,EAAE,MAAM,EAAE,CAAC;QACvB,MAAM,EAAE,MAAM,EAAE,CAAC;QACjB,KAAK,EAAE,MAAM,EAAE,CAAC;KACjB,CAAC;CACH,CAqCA"}
1	+ {"version":3,"file":"evidence-aggregator.d.ts","sourceRoot":"","sources":["../../src/specifica/evidence-aggregator.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAE/D;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,cAAc,GAAG,YAAY,CAyCvE;AAuHD;;GAEG;AACH,wBAAgB,sBAAsB,CACpC,OAAO,EAAE,cAAc,EACvB,UAAU,EAAE,YAAY,GACvB,MAAM,CAoCR;AAED;;GAEG;AACH,wBAAgB,6BAA6B,CAAC,OAAO,EAAE,cAAc,GAAG;IACtE,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,QAAQ,GAAG,MAAM,CAAA;KAAE,CAAC,CAAC;IAC3E,QAAQ,EAAE;QACR,WAAW,EAAE,MAAM,EAAE,CAAC;QACtB,QAAQ,EAAE,MAAM,EAAE,CAAC;QACnB,YAAY,EAAE,MAAM,EAAE,CAAC;QACvB,MAAM,EAAE,MAAM,EAAE,CAAC;QACjB,KAAK,EAAE,MAAM,EAAE,CAAC;KACjB,CAAC;CACH,CAqCA"}

package/dist/specifica/evidence-aggregator.js CHANGED Viewed

@@ -19,7 +19,7 @@ export function aggregateEvidence(cluster) {
     const exports = deduplicateExports(allEvidence.flatMap(e => e.exports));
     const sources = allEvidence.flatMap(e => e.sources);
     const sinks = allEvidence.flatMap(e => e.sinks);
-    const vulnerabilities = allEvidence.flatMap(e => e.vulnerabilities);
+    const vulnerabilities = deduplicateVulnerabilities(allEvidence.flatMap(e => e.vulnerabilities));
     const comments = allEvidence.flatMap(e => e.comments);
     const todos = deduplicateTodos(allEvidence.flatMap(e => e.todos));
     // Detect primary framework (most common)
@@ -119,6 +119,21 @@ function deduplicateExports(exports) {
     }
     return result;
 }
+/**
+ * Deduplicate vulnerabilities by CWE + sink type
+ */
+function deduplicateVulnerabilities(vulns) {
+    const seen = new Set();
+    const result = [];
+    for (const vuln of vulns) {
+        const key = `${vuln.cwe}:${vuln.sinkType}`;
+        if (!seen.has(key)) {
+            seen.add(key);
+            result.push(vuln);
+        }
+    }
+    return result;
+}
 /**
  * Deduplicate TODO items
  */

package/dist/specifica/evidence-aggregator.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/specifica/evidence-extractor.js CHANGED Viewed

@@ -309,13 +309,18 @@ function extractExports(analysis) {
  */
 function extractVulnerabilities(analysis) {
     const vulnerabilities = [];
-    // Match sources with sinks to create vulnerabilities
+    const seen = new Set();
+    // Match sources with sinks to create vulnerabilities, deduplicated by CWE + sink type
     for (const sink of analysis.taint.sinks || []) {
+        const key = `${sink.cwe}:${sink.type}`;
+        if (seen.has(key))
+            continue;
         // Find sources that could flow to this sink
         const relatedSources = (analysis.taint.sources || []).filter(source => source.line < sink.line // Simple heuristic
         );
         if (relatedSources.length > 0) {
-            const source = relatedSources[0]; // Take first for simplicity
+            seen.add(key);
+            const source = relatedSources[0];
             vulnerabilities.push({
                 cwe: sink.cwe,
                 severity: sink.confidence > 0.8 ? 'high' : sink.confidence > 0.5 ? 'medium' : 'low',

package/dist/specifica/evidence-extractor.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/specifica/spec-generator.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"spec-generator.d.ts","sourceRoot":"","sources":["../../src/specifica/spec-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EACV,YAAY,EACZ,aAAa,EACb,gBAAgB,EAEjB,MAAM,YAAY,CAAC;AAEpB;;;GAGG;AACH,wBAAsB,YAAY,CAChC,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,gBAAqB,GAC7B,OAAO,CAAC;IAAE,IAAI,EAAE,aAAa,CAAC;IAAC,MAAM,EAAE,KAAK,GAAG,QAAQ,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAkB5E;~~AA4JD~~;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,aAAa,EAAE,QAAQ,EAAE;IAAE,cAAc,EAAE,OAAO,CAAA;CAAE,GAAG,MAAM,CAsDrG"}
1	+ {"version":3,"file":"spec-generator.d.ts","sourceRoot":"","sources":["../../src/specifica/spec-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EACV,YAAY,EACZ,aAAa,EACb,gBAAgB,EAEjB,MAAM,YAAY,CAAC;AAEpB;;;GAGG;AACH,wBAAsB,YAAY,CAChC,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,gBAAqB,GAC7B,OAAO,CAAC;IAAE,IAAI,EAAE,aAAa,CAAC;IAAC,MAAM,EAAE,KAAK,GAAG,QAAQ,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAkB5E;AAoQD;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,aAAa,EAAE,QAAQ,EAAE;IAAE,cAAc,EAAE,OAAO,CAAA;CAAE,GAAG,MAAM,CAsDrG"}

package/dist/specifica/spec-generator.js CHANGED Viewed

@@ -91,64 +91,141 @@ async function generateWithLLM(evidence, options) {
  */
 function generateFallbackSpec(evidence) {
     const requirements = [];
+    const seenDescriptions = new Set();
     let reqId = 1;
-    // Generate requirements from API endpoints
-    for (const endpoint of evidence.publicAPI) {
+    function addRequirement(description, category, priority) {
+        if (seenDescriptions.has(description))
+            return;
+        seenDescriptions.add(description);
         requirements.push({
             id: `REQ-${String(reqId++).padStart(3, '0')}`,
-            description: `System shall handle ${endpoint.method} requests to ${endpoint.path}`,
-            category: 'functional',
-            priority: 'must',
+            description,
+            category,
+            priority,
             tested: false,
         });
+    }
+    // Generate requirements from API endpoints
+    for (const endpoint of evidence.publicAPI) {
+        addRequirement(`System shall handle ${endpoint.method} requests to ${endpoint.path}`, 'functional', 'must');
         // Add parameter validation requirements
         const requiredParams = endpoint.parameters.filter(p => p.required);
         if (requiredParams.length > 0) {
-            requirements.push({
-                id: `REQ-${String(reqId++).padStart(3, '0')}`,
-                description: `System shall validate required parameters: ${requiredParams.map(p => p.name).join(', ')}`,
-                category: 'functional',
-                priority: 'must',
-                tested: false,
-            });
+            addRequirement(`System shall validate required parameters: ${requiredParams.map(p => p.name).join(', ')}`, 'functional', 'must');
         }
     }
-    // Generate security requirements from vulnerabilities
+    // Generate security requirements from vulnerabilities (already deduplicated at extraction)
     for (const vuln of evidence.vulnerabilities) {
-        requirements.push({
-            id: `REQ-${String(reqId++).padStart(3, '0')}`,
-            description: `System shall prevent ${vuln.cwe}: ${vuln.description}`,
-            category: 'security',
-            priority: 'must',
-            tested: false,
-        });
+        addRequirement(`System shall prevent ${vuln.cwe}: ${vuln.description}`, 'security', 'must');
     }
     // If no requirements generated, create a basic one
     if (requirements.length === 0) {
-        requirements.push({
-            id: 'REQ-001',
-            description: `System shall provide ${evidence.methods.length} methods as defined in implementation`,
-            category: 'functional',
-            priority: 'should',
-            tested: false,
-        });
+        addRequirement(`System shall provide ${evidence.methods.length} methods as defined in implementation`, 'functional', 'should');
+    }
+    // Derive edge cases from actual evidence
+    const edgeCases = deriveEdgeCases(evidence);
+    // Derive error scenarios from actual evidence
+    const errorScenarios = deriveErrorScenarios(evidence);
+    // Build summary
+    const parts = [];
+    if (evidence.types.length > 0) {
+        parts.push(`${evidence.types.length} type(s)`);
+    }
+    if (evidence.methods.length > 0) {
+        parts.push(`${evidence.methods.length} method(s)`);
+    }
+    if (evidence.publicAPI.length > 0) {
+        parts.push(`${evidence.publicAPI.length} API endpoint(s)`);
     }
+    const summary = parts.length > 0
+        ? `Feature providing ${parts.join(', ')}.`
+        : `Feature defined in ${evidence.filePath.split('/').pop()}.`;
     return {
         title: extractFeatureName(evidence),
-        summary: `Feature providing ${evidence.methods.length} methods with ${evidence.publicAPI.length} API endpoints.`,
+        summary,
         requirements,
-        edgeCases: [
-            'Invalid input parameters',
-            'Missing required fields',
-            'Concurrent access',
-        ],
-        errorScenarios: [
-            'Database connection failure',
-            'Invalid data format',
-            'Authentication failure',
-        ],
+        edgeCases,
+        errorScenarios,
     };
 }
+/**
+ * Derive edge cases from actual code evidence
+ */
+function deriveEdgeCases(evidence) {
+    const cases = [];
+    // From API parameters
+    const allParams = evidence.publicAPI.flatMap(e => e.parameters);
+    if (allParams.some(p => p.required)) {
+        cases.push('Missing required parameters');
+    }
+    if (allParams.some(p => p.type === 'string')) {
+        cases.push('Empty string input');
+    }
+    if (allParams.some(p => p.type?.includes('int') || p.type?.includes('number') || p.type?.includes('long'))) {
+        cases.push('Boundary values for numeric parameters');
+    }
+    // From vulnerabilities
+    if (evidence.vulnerabilities.some(v => v.sinkType === 'path_traversal')) {
+        cases.push('Path traversal attempts (e.g. ../ sequences)');
+    }
+    if (evidence.vulnerabilities.some(v => v.sinkType === 'sql_injection')) {
+        cases.push('SQL injection payloads in user input');
+    }
+    if (evidence.vulnerabilities.some(v => v.sinkType === 'xss')) {
+        cases.push('Script injection in user-supplied content');
+    }
+    if (evidence.vulnerabilities.some(v => v.sinkType === 'command_injection')) {
+        cases.push('Shell metacharacters in command arguments');
+    }
+    // From methods
+    if (evidence.methods.some(m => m.isAsync)) {
+        cases.push('Concurrent access to shared state');
+    }
+    if (evidence.methods.some(m => m.hasValidation)) {
+        cases.push('Invalid input that fails validation');
+    }
+    // Fallback if nothing specific was found
+    if (cases.length === 0) {
+        cases.push('Unexpected input types');
+    }
+    return cases;
+}
+/**
+ * Derive error scenarios from actual code evidence
+ */
+function deriveErrorScenarios(evidence) {
+    const scenarios = [];
+    // From methods
+    if (evidence.methods.some(m => m.hasDatabaseAccess)) {
+        scenarios.push('Database connection failure');
+    }
+    if (evidence.methods.some(m => m.hasHttpHandling)) {
+        scenarios.push('Malformed HTTP request');
+    }
+    if (evidence.methods.some(m => m.hasErrorHandling)) {
+        scenarios.push('Upstream service returning error response');
+    }
+    // From imports / framework
+    if (evidence.framework?.name) {
+        scenarios.push(`${evidence.framework.name} framework initialization failure`);
+    }
+    // From taint sources
+    const sourceTypes = new Set(evidence.sources.map(s => s.type));
+    if (sourceTypes.has('file_input')) {
+        scenarios.push('File not found or unreadable');
+    }
+    if (sourceTypes.has('env_input')) {
+        scenarios.push('Missing environment variable');
+    }
+    if (sourceTypes.has('network_input')) {
+        scenarios.push('Network timeout or connection refused');
+    }
+    // Fallback
+    if (scenarios.length === 0) {
+        scenarios.push('Unhandled runtime exception');
+    }
+    return scenarios;
+}
 /**
  * Extract feature name from file path
  */

package/dist/specifica/spec-generator.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "circle-ir-ai",
-  "version": "1.14.0",
+  "version": "1.15.0",
   "description": "LLM-enhanced SAST analysis built on circle-ir",
   "main": "dist/index.js",
   "module": "dist/index.js",
@@ -85,7 +85,7 @@
   "dependencies": {
     "@ax-llm/ax": "^19.0.37",
     "@mastra/core": "^1.17.0",
-    "circle-ir": "^3.14.0",
+    "circle-ir": "^3.16.0",
     "p-queue": "^9.1.0"
   },
   "devDependencies": {