cimg.cxx 3.6.3

package/plugins/tiff_stream.h

@@ -0,0 +1,196 @@
+/*
+#
+#  File        : tiff_stream.h
+#                ( C++ header file - CImg plug-in )
+#
+#  Description : This CImg plug-in provide functions to load and save tiff images
+#                from std::istream/ to std::ostream
+#                This file is a part of the CImg Library project.
+#                ( http://cimg.eu )
+#
+#  Copyright   : Wolf Blecher
+#                ( Wolf.Blecher(at)sirona.com )
+#
+#  License     : CeCILL v2.0
+#                ( http://www.cecill.info/licences/Licence_CeCILL_V2-en.html )
+#
+#  This software is governed by the CeCILL  license under French law and
+#  abiding by the rules of distribution of free software.  You can  use,
+#  modify and/ or redistribute the software under the terms of the CeCILL
+#  license as circulated by CEA, CNRS and INRIA at the following URL
+#  "http://www.cecill.info".
+#
+#  As a counterpart to the access to the source code and  rights to copy,
+#  modify and redistribute granted by the license, users are provided only
+#  with a limited warranty  and the software's author,  the holder of the
+#  economic rights,  and the successive licensors  have only  limited
+#  liability.
+#
+#  In this respect, the user's attention is drawn to the risks associated
+#  with loading,  using,  modifying and/or developing or reproducing the
+#  software by the user in light of its specific status of free software,
+#  that may mean  that it is complicated to manipulate,  and  that  also
+#  therefore means  that it is reserved for developers  and  experienced
+#  professionals having in-depth computer knowledge. Users are therefore
+#  encouraged to load and test the software's suitability as regards their
+#  requirements in conditions enabling the security of their systems and/or
+#  data to be ensured and,  more generally, to use and operate it in the
+#  same conditions as regards security.
+#
+#  The fact that you are presently reading this means that you have had
+#  knowledge of the CeCILL license and that you accept its terms.
+#
+*/
+
+/*-----------------------------------------------------------------------------------
+
+IMPORTANT NOTE :
+
+You *need* to include the following lines in your own code to use this plugin:
+
+#include "tiffio.h"
+#include "tiffio.hxx"
+
+You *need* to link your code with the libtiff and libtiffxx libraries as well.
+
+------------------------------------------------------------------------------------*/
+
+#ifndef cimg_use_tiff
+#error cimg_use_tiff not defined
+#endif
+
+#ifndef cimg_plugin_tiff_stream
+#define cimg_plugin_tiff_stream
+
+#include <ios>
+
+/////////////////////////////////////////////////////////////////
+//
+//    Define main CImg plugin functions.
+//    (you should use these functions only in your own code)
+//
+/////////////////////////////////////////////////////////////////
+
+//! Save image as a TIFF file.
+/**
+   \param tiffOutStream std::ostream, where to write the image to
+   \param compression_type Type of data compression.
+     Can be <tt>{ 1=None | 2=CCITTRLE | 3=CCITTFAX3 | 4=CCITTFAX4 | 5=LZW | 6=JPEG }</tt>.
+   \note
+   - libtiff support is enabled by defining the precompilation
+   directive \c cimg_use_tiff.
+   - When libtiff is enabled, 2D and 3D (multipage) several
+   channel per pixel are supported for
+   <tt>char,uchar,short,ushort,float</tt> and \c double pixel types.
+**/
+const CImg<T>& save_tiff(std::ostream *tiffOutStream, const unsigned int compression_type=0) const {
+  if (!tiffOutStream->good())
+    {
+      throw CImgArgumentException(_cimg_instance
+                                  "save_tiff(): tiffstream is not good!",
+                                  cimg_instance);
+    }
+
+  if (is_empty())
+    {
+      throw CImgArgumentException(_cimg_instance
+                                  "Not allowed to write empty images to stream",
+                                  cimg_instance
+                                  );
+    }
+
+  TIFF *tif = TIFFStreamOpen("MemTiff", tiffOutStream);
+  if (tif)
+    {
+      cimg_forZ(*this,z) {
+        CImg<T> slice = get_slice(z);
+        double val_min, val_max = (double)slice.max_min(val_min);
+        slice._save_tiff(tif,z,z,compression_type,0,0,val_min,val_max);
+      }
+      tiffOutStream->flush();
+      TIFFClose(tif);
+    }
+  else
+    {
+      throw CImgIOException(_cimg_instance
+                            "save_tiff(): Failed to stream for writing.",
+                            cimg_instance);
+    }
+
+  return *this;
+}
+
+//! Load images from a TIFF file.
+/**
+   \param tiffInStream std::istream to read data from.
+   \param first_frame Index of first image frame to read.
+   \param last_frame Index of last image frame to read.
+   \param step_frame Step applied between each frame.
+**/
+CImg<T>& load_tiff(std::istream* tiffInStream,
+                   const unsigned int first_frame=0, const unsigned int last_frame=~0U,
+                   const unsigned int step_frame=1)
+{
+  const unsigned int
+    nfirst_frame = first_frame<last_frame?first_frame:last_frame,
+    nstep_frame = step_frame?step_frame:1;
+  unsigned int nlast_frame = first_frame<last_frame?last_frame:first_frame;
+
+  TIFF *tif = TIFFStreamOpen("MemTiff", tiffInStream);
+  if (tif)
+    {
+      unsigned int nb_images = 0;
+      do {
+        ++nb_images;
+      } while (TIFFReadDirectory(tif));
+
+      if (nfirst_frame>=nb_images || (nlast_frame!=~0U && nlast_frame>=nb_images))
+        {
+          cimg::warn("load_tiff(): Invalid specified frame range is [%u,%u] (step %u) "
+                     "since stream contains %u image(s).",
+                     nfirst_frame,nlast_frame,nstep_frame,nb_images);
+        }
+
+      if (nfirst_frame>=nb_images)
+        {
+          return assign();
+        }
+
+      if (nlast_frame>=nb_images)
+        {
+          nlast_frame = nb_images - 1;
+        }
+      TIFFSetDirectory(tif,0);
+      CImg<T> frame;
+      for (unsigned int l = nfirst_frame; l<=nlast_frame; l+=nstep_frame) {
+        frame._load_tiff(tif,l,0,0,0);
+        if (l==nfirst_frame)
+          assign(frame._width,frame._height,1 + (nlast_frame - nfirst_frame)/nstep_frame,frame._spectrum);
+        if (frame._width>_width || frame._height>_height || frame._spectrum>_spectrum)
+          resize(std::max(frame._width,_width),std::max(frame._height,_height),
+                 -100,std::max(frame._spectrum,_spectrum),0);
+        draw_image(0,0,(l - nfirst_frame)/nstep_frame,frame);
+      }
+      TIFFClose(tif);
+    }
+  else
+    {
+      throw CImgIOException(_cimg_instance
+                            "load_tiff(): Failed to read data from stream",
+                            cimg_instance);
+    }
+
+  return *this;
+}
+
+//! Load a multi-page TIFF file \newinstance.
+static CImg<T> get_load_tiff(std::istream* tiffInStream,
+                             const unsigned int first_frame=0, const unsigned int last_frame=~0U,
+                             const unsigned int step_frame=1)
+{
+  return CImg<T>().load_tiff(tiffInStream,first_frame,last_frame,step_frame);
+}
+
+// End of the plug-in
+//-------------------
+#endif /* cimg_plugin_tiff_stream */

package/plugins/tinymatwriter.h

@@ -0,0 +1,109 @@
+/*
+#
+#  File        : tinymatwriter.h
+#                ( C++ header file - CImg plug-in )
+#
+#  Description : This CImg plug-in provide functions to write image as 
+#                Matlab MAT files
+#                ( http://cimg.eu )
+#
+#  Copyright   : Jan W. Krieger
+#                ( j.krieger(at)dkfz.de   jan(at)jkrieger.de )
+#
+#  License     : CeCILL v2.0
+#                ( http://www.cecill.info/licences/Licence_CeCILL_V2-en.html )
+#
+#  This software is governed by the CeCILL  license under French law and
+#  abiding by the rules of distribution of free software.  You can  use,
+#  modify and/ or redistribute the software under the terms of the CeCILL
+#  license as circulated by CEA, CNRS and INRIA at the following URL
+#  "http://www.cecill.info".
+#
+#  As a counterpart to the access to the source code and  rights to copy,
+#  modify and redistribute granted by the license, users are provided only
+#  with a limited warranty  and the software's author,  the holder of the
+#  economic rights,  and the successive licensors  have only  limited
+#  liability.
+#
+#  In this respect, the user's attention is drawn to the risks associated
+#  with loading,  using,  modifying and/or developing or reproducing the
+#  software by the user in light of its specific status of free software,
+#  that may mean  that it is complicated to manipulate,  and  that  also
+#  therefore means  that it is reserved for developers  and  experienced
+#  professionals having in-depth computer knowledge. Users are therefore
+#  encouraged to load and test the software's suitability as regards their
+#  requirements in conditions enabling the security of their systems and/or
+#  data to be ensured and,  more generally, to use and operate it in the
+#  same conditions as regards security.
+#
+#  The fact that you are presently reading this means that you have had
+#  knowledge of the CeCILL license and that you accept its terms.
+#
+*/
+
+/*-----------------------------------------------------------------------------------
+
+IMPORTANT NOTE :
+
+You *need* to compile tinymatwriter.cpp and link the result to your project and
+include "tinymatwriter.h" berfore inclusing CIMg or this plugin!
+
+This library is available from:
+    https://github.com/jkriege2/TinyMAT
+------------------------------------------------------------------------------------*/
+
+
+
+#ifndef cimg_plugin_tinymatwriter
+#define cimg_plugin_tinymatwriter
+
+#include<cstdint>
+
+/////////////////////////////////////////////////////////////////
+//
+//    Define main CImg plugin functions.
+//    (you should use these functions only in your own code)
+//
+/////////////////////////////////////////////////////////////////
+
+//! Save image as a MAT file.
+/**
+   \param filename filename of the output file
+   \note TinyMATWriter supports signed/unsigned int with 8/16/32/64 bits, double, float and bool as pixel types!
+**/
+const CImg& save_tinymat(const char *filename) const {
+
+  TinyMATWriterFile* mat=TinyMATWriter_open(filename);
+  if (mat) {
+      int32_t size_x=width();
+      int32_t size_y=height();
+      int32_t size_z=depth();
+      int32_t size_c=spectrum();
+      
+      int32_t sizes[4]={size_x, size_y, size_z, size_c};
+      uint32_t dims=4;
+      if (size_c==1) {
+          dims=3;
+          if (size_z==1) {
+              dims=2;
+			  if (size_y==1) {
+                  dims=1;
+			  }
+          }
+      }
+	  
+	  TinyMATWriter_writeMatrixND_rowmajor(mat, "CImg_image", data(), sizes, dims);
+      TinyMATWriter_close(mat);
+  } else {
+      throw CImgIOException(_cimg_instance
+                            "save_tinymat(): Failed to open file.",
+                            cimg_instance);
+  }
+
+  return *this;
+}
+
+
+// End of the plug-in
+//-------------------
+#endif /* cimg_plugin_tinymatwriter */