celldega 0.1.8 → 0.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/LICENSE.txt ADDED
@@ -0,0 +1,33 @@
1
+ Academic Software License: © 2024 The Broad Institute, Inc. (“Institution”). Academic or
2
+ nonprofit researchers are permitted to use this Software (as defined below) subject to Paragraphs
3
+ 1-4:
4
+ 1. Institution hereby grants to you free of charge, so long as you are an academic or
5
+ nonprofit researcher, a nonexclusive license under Institution’s copyright ownership
6
+ interest in this software and any derivative works made by you thereof (collectively, the
7
+ “Software”) to use, copy, and make derivative works of the Software solely for
8
+ educational or academic research purposes, and to distribute such Software free of charge
9
+ to other academic or nonprofit researchers for their educational or academic research
10
+ purposes, in all cases subject to the terms of this Academic Software License. Except as
11
+ granted herein, all rights are reserved by Institution, including the right to pursue patent
12
+ protection of the Software.
13
+ 2. Any distribution of copies of this Software -- including any derivative works made by
14
+ you thereof -- must include a copy (including the copyright notice above), and be made
15
+ subject to the terms, of this Academic Software License; failure by you to adhere to the
16
+ requirements in Paragraphs 1 and 2 will result in immediate termination of the license
17
+ granted to you pursuant to this Academic Software License effective as of the date you
18
+ first used the Software.
19
+ 3. IN NO EVENT WILL INSTITUTION BE LIABLE TO ANY ENTITY OR PERSON
20
+ FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL
21
+ DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS
22
+ SOFTWARE, EVEN IF INSTITUTION HAS BEEN ADVISED OF THE POSSIBILITY
23
+ OF SUCH DAMAGE. INSTITUTION SPECIFICALLY DISCLAIMS ANY AND ALL
24
+ WARRANTIES, EXPRESS AND IMPLIED, INCLUDING, BUT NOT LIMITED TO,
25
+ ANY IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
26
+ PARTICULAR PURPOSE. THE SOFTWARE IS PROVIDED “AS IS.” INSTITUTION
27
+ HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES,
28
+ ENHANCEMENTS, OR MODIFICATIONS OF THIS SOFTWARE.
29
+ 4. Any academic or scholarly publication arising from the use of this Software or any
30
+ derivative works thereof will include the following acknowledgment:  The Software
31
+ used in this research was created by Nicolas Fernandez of The Broad Institute, Inc.
32
+ © 2024 The Broad Institute, Inc.
33
+ Commercial entities: please contact OSAP@broadinstitute.org for licensing opportunities.
package/README.md CHANGED
@@ -49,10 +49,20 @@ $ hatch build
49
49
  $ hatch publish
50
50
  ```
51
51
 
52
+ #### Hatch Development
53
+ ```
54
+ $ hatch env prune # Remove old environments
55
+ $ hatch env create # Create a new environment based on pyproject.toml
56
+ $ hatch shell # Activate the new environment
57
+ ```
58
+
52
59
  ### NPM
53
60
  Increment version in `package.json` and
54
61
 
55
62
  ```
56
- $ npm build
63
+ $ npm run build
57
64
  $ npm publish
58
- ```
65
+ ```
66
+
67
+ #### Development Notes
68
+ May use older version of deck.gl 8.9.1 until bug with instanced layer is resolved using newer versions "^9.0.5".;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "celldega",
3
- "version": "0.1.8",
3
+ "version": "0.2.0",
4
4
  "type": "module",
5
5
  "scripts": {
6
6
  "dev": "npm run build -- --sourcemap=inline --watch",
@@ -12,7 +12,10 @@
12
12
  "@loaders.gl/core": "4.1.1",
13
13
  "apache-arrow": "15.0.2",
14
14
  "deck.gl": "^9.0.5",
15
- "math.gl": "2.3.3"
15
+ "math.gl": "2.3.3",
16
+ "d3":"^7.9.0",
17
+ "underscore": "1.9.1",
18
+ "clustergrammer-gl":"0.25.0"
16
19
  },
17
20
  "devDependencies": {
18
21
  "@eslint/js": "^9.0.0",