causantic 0.9.3 → 0.10.0

package/dist/storage/vector-store.js

@@ -88,6 +88,14 @@ export class VectorStore {
     modelId = 'jina-small';
     /** Expected embedding dimensions for the current model. */
     expectedDims = 512;
+    /** SQL table name for persistence. Default: 'vectors'. */
+    tableName;
+    /** Optional lookup table for resolving entity metadata (e.g. 'index_entries' for index vectors). */
+    metadataTable;
+    constructor(options) {
+        this.tableName = options?.tableName ?? 'vectors';
+        this.metadataTable = options?.metadataTable ?? null;
+    }
     /**
      * Set the active model ID for this vector store.
      * Only vectors matching this model_id are loaded and returned from search.
@@ -116,7 +124,7 @@ export class VectorStore {
         const db = getDb();
         // Ensure vectors table exists with TTL columns
         db.exec(`
-      CREATE TABLE IF NOT EXISTS vectors (
+      CREATE TABLE IF NOT EXISTS ${this.tableName} (
         id TEXT PRIMARY KEY,
         embedding BLOB NOT NULL,
         orphaned_at TEXT DEFAULT NULL,
@@ -125,65 +133,64 @@ export class VectorStore {
       )
     `);
         // Migrate existing tables
-        const columns = db.prepare('PRAGMA table_info(vectors)').all();
+        const columns = db.prepare(`PRAGMA table_info(${this.tableName})`).all();
         const hasOrphanedAt = columns.some((c) => c.name === 'orphaned_at');
         const hasLastAccessed = columns.some((c) => c.name === 'last_accessed');
         const hasModelId = columns.some((c) => c.name === 'model_id');
         if (!hasOrphanedAt) {
-            db.exec('ALTER TABLE vectors ADD COLUMN orphaned_at TEXT DEFAULT NULL');
+            db.exec(`ALTER TABLE ${this.tableName} ADD COLUMN orphaned_at TEXT DEFAULT NULL`);
         }
         if (!hasLastAccessed) {
-            db.exec('ALTER TABLE vectors ADD COLUMN last_accessed TEXT DEFAULT CURRENT_TIMESTAMP');
-            db.exec('UPDATE vectors SET last_accessed = CURRENT_TIMESTAMP WHERE last_accessed IS NULL');
+            db.exec(`ALTER TABLE ${this.tableName} ADD COLUMN last_accessed TEXT DEFAULT CURRENT_TIMESTAMP`);
+            db.exec(`UPDATE ${this.tableName} SET last_accessed = CURRENT_TIMESTAMP WHERE last_accessed IS NULL`);
         }
         if (!hasModelId) {
-            db.exec("ALTER TABLE vectors ADD COLUMN model_id TEXT DEFAULT 'jina-small'");
-            db.exec("UPDATE vectors SET model_id = 'jina-small' WHERE model_id IS NULL");
-            db.exec('CREATE INDEX IF NOT EXISTS idx_vectors_model ON vectors(model_id)');
+            db.exec(`ALTER TABLE ${this.tableName} ADD COLUMN model_id TEXT DEFAULT 'jina-small'`);
+            db.exec(`UPDATE ${this.tableName} SET model_id = 'jina-small' WHERE model_id IS NULL`);
+            db.exec(`CREATE INDEX IF NOT EXISTS idx_${this.tableName}_model ON ${this.tableName}(model_id)`);
         }
         // Load only vectors matching the active model_id
         const rows = db
-            .prepare('SELECT id, embedding FROM vectors WHERE model_id = ?')
+            .prepare(`SELECT id, embedding FROM ${this.tableName} WHERE model_id = ?`)
             .all(this.modelId);
         for (const row of rows) {
             const embedding = deserializeEmbedding(row.embedding);
             this.vectors.set(row.id, embedding);
         }
-        // Populate chunk→project index from chunks table
+        // Populate metadata indexes (project, agent, team)
+        const metaTable = this.metadataTable ?? 'chunks';
         try {
-            const chunkRows = db
-                .prepare("SELECT id, session_slug FROM chunks WHERE session_slug != ''")
+            const projectRows = db
+                .prepare(`SELECT id, session_slug FROM ${metaTable} WHERE session_slug != ''`)
                 .all();
-            for (const row of chunkRows) {
+            for (const row of projectRows) {
                 this.chunkProjectIndex.set(row.id, row.session_slug);
             }
         }
         catch {
-            // chunks table may not exist yet (e.g., during migrations)
+            // metadata table may not exist yet (e.g., during migrations)
         }
-        // Populate chunk→agent index
         try {
             const agentRows = db
-                .prepare('SELECT id, agent_id FROM chunks WHERE agent_id IS NOT NULL')
+                .prepare(`SELECT id, agent_id FROM ${metaTable} WHERE agent_id IS NOT NULL`)
                 .all();
             for (const row of agentRows) {
                 this.chunkAgentIndex.set(row.id, row.agent_id);
             }
         }
         catch {
-            // chunks table may not exist yet
+            // metadata table may not exist yet
         }
-        // Populate chunk→team index
         try {
             const teamRows = db
-                .prepare('SELECT id, team_name FROM chunks WHERE team_name IS NOT NULL')
+                .prepare(`SELECT id, team_name FROM ${metaTable} WHERE team_name IS NOT NULL`)
                 .all();
             for (const row of teamRows) {
                 this.chunkTeamIndex.set(row.id, row.team_name);
             }
         }
         catch {
-            // chunks table may not exist yet
+            // metadata table may not exist yet
         }
         this.loaded = true;
     }
@@ -198,12 +205,13 @@ export class VectorStore {
         }
         const db = getDb();
         const blob = serializeEmbedding(embedding);
-        db.prepare('INSERT OR REPLACE INTO vectors (id, embedding, orphaned_at, last_accessed, model_id) VALUES (?, ?, NULL, CURRENT_TIMESTAMP, ?)').run(id, blob, this.modelId);
+        db.prepare(`INSERT OR REPLACE INTO ${this.tableName} (id, embedding, orphaned_at, last_accessed, model_id) VALUES (?, ?, NULL, CURRENT_TIMESTAMP, ?)`).run(id, blob, this.modelId);
         this.vectors.set(id, embedding);
         // Update project, agent, and team indexes
+        const metaTable = this.metadataTable ?? 'chunks';
         try {
             const row = db
-                .prepare('SELECT session_slug, agent_id, team_name FROM chunks WHERE id = ?')
+                .prepare(`SELECT session_slug, agent_id, team_name FROM ${metaTable} WHERE id = ?`)
                 .get(id);
             if (row?.session_slug) {
                 this.chunkProjectIndex.set(id, row.session_slug);
@@ -216,7 +224,7 @@ export class VectorStore {
             }
         }
         catch {
-            // chunks table may not exist
+            // metadata table may not exist
         }
     }
     /**
@@ -232,7 +240,7 @@ export class VectorStore {
             }
         }
         const db = getDb();
-        const stmt = db.prepare('INSERT OR REPLACE INTO vectors (id, embedding, orphaned_at, last_accessed, model_id) VALUES (?, ?, NULL, CURRENT_TIMESTAMP, ?)');
+        const stmt = db.prepare(`INSERT OR REPLACE INTO ${this.tableName} (id, embedding, orphaned_at, last_accessed, model_id) VALUES (?, ?, NULL, CURRENT_TIMESTAMP, ?)`);
         const modelId = this.modelId;
         const insertMany = db.transaction((items) => {
             for (const item of items) {
@@ -243,12 +251,13 @@ export class VectorStore {
         });
         insertMany(items);
         // Update project, agent, and team indexes for batch
+        const metaTable = this.metadataTable ?? 'chunks';
         try {
             const ids = items.map((i) => i.id);
             if (ids.length > 0) {
                 const placeholders = sqlPlaceholders(ids.length);
                 const rows = db
-                    .prepare(`SELECT id, session_slug, agent_id, team_name FROM chunks WHERE id IN (${placeholders}) AND session_slug != ''`)
+                    .prepare(`SELECT id, session_slug, agent_id, team_name FROM ${metaTable} WHERE id IN (${placeholders}) AND session_slug != ''`)
                     .all(...ids);
                 for (const row of rows) {
                     this.chunkProjectIndex.set(row.id, row.session_slug);
@@ -262,7 +271,7 @@ export class VectorStore {
             }
         }
         catch {
-            // chunks table may not exist
+            // metadata table may not exist
         }
     }
     /**
@@ -372,7 +381,7 @@ export class VectorStore {
     async delete(id) {
         await this.load();
         const db = getDb();
-        const result = db.prepare('DELETE FROM vectors WHERE id = ?').run(id);
+        const result = db.prepare(`DELETE FROM ${this.tableName} WHERE id = ?`).run(id);
         this.vectors.delete(id);
         return result.changes > 0;
     }
@@ -385,7 +394,7 @@ export class VectorStore {
         await this.load();
         const db = getDb();
         const placeholders = sqlPlaceholders(ids.length);
-        const result = db.prepare(`DELETE FROM vectors WHERE id IN (${placeholders})`).run(...ids);
+        const result = db.prepare(`DELETE FROM ${this.tableName} WHERE id IN (${placeholders})`).run(...ids);
         for (const id of ids) {
             this.vectors.delete(id);
             this.chunkProjectIndex.delete(id);
@@ -411,7 +420,7 @@ export class VectorStore {
      */
     async clear() {
         const db = getDb();
-        db.exec('DELETE FROM vectors');
+        db.exec(`DELETE FROM ${this.tableName}`);
         this.vectors.clear();
     }
     /**
@@ -463,7 +472,7 @@ export class VectorStore {
             return;
         const db = getDb();
         const placeholders = sqlPlaceholders(ids.length);
-        db.prepare(`UPDATE vectors SET last_accessed = CURRENT_TIMESTAMP WHERE id IN (${placeholders})`).run(...ids);
+        db.prepare(`UPDATE ${this.tableName} SET last_accessed = CURRENT_TIMESTAMP WHERE id IN (${placeholders})`).run(...ids);
     }
     /**
      * Clean up expired vectors and their corresponding chunks.
@@ -479,7 +488,7 @@ export class VectorStore {
         // Find expired vectors (any vector not accessed within TTL)
         const expiredRows = db
             .prepare(`
-      SELECT id FROM vectors
+      SELECT id FROM ${this.tableName}
       WHERE last_accessed < datetime('now', '-' || ? || ' days')
     `)
             .all(ttlDays);
@@ -492,7 +501,7 @@ export class VectorStore {
         db.prepare(`DELETE FROM chunks WHERE id IN (${placeholders})`).run(...expiredIds);
         // Delete vectors
         const result = db
-            .prepare(`DELETE FROM vectors WHERE id IN (${placeholders})`)
+            .prepare(`DELETE FROM ${this.tableName} WHERE id IN (${placeholders})`)
             .run(...expiredIds);
         // Remove empty clusters (no remaining members after chunk deletion)
         db.prepare(`
@@ -500,6 +509,28 @@ export class VectorStore {
         SELECT DISTINCT cluster_id FROM chunk_clusters
       )
     `).run();
+        // Clean up index entries that referenced the deleted chunks
+        try {
+            const placeholdersForCleanup = sqlPlaceholders(expiredIds.length);
+            // Remove reverse-lookup rows
+            db.prepare(`DELETE FROM index_entry_chunks WHERE chunk_id IN (${placeholdersForCleanup})`).run(...expiredIds);
+            // Delete orphaned index entries (no remaining chunk references)
+            const orphaned = db.prepare(`SELECT id FROM index_entries WHERE id NOT IN (
+          SELECT DISTINCT index_entry_id FROM index_entry_chunks
+        )`).all();
+            if (orphaned.length > 0) {
+                const orphanIds = orphaned.map((r) => r.id);
+                const orphanPlaceholders = sqlPlaceholders(orphanIds.length);
+                db.prepare(`DELETE FROM index_entries WHERE id IN (${orphanPlaceholders})`).run(...orphanIds);
+                // Remove from index vector store (if this is the chunk vector store)
+                if (this.tableName === 'vectors') {
+                    db.prepare(`DELETE FROM index_vectors WHERE id IN (${orphanPlaceholders})`).run(...orphanIds);
+                }
+            }
+        }
+        catch {
+            // index_entry_chunks table may not exist yet
+        }
         // Remove from memory
         for (const id of expiredIds) {
             this.vectors.delete(id);
@@ -526,7 +557,7 @@ export class VectorStore {
         // Select the oldest vectors by last_accessed
         const toEvict = db
             .prepare(`
-      SELECT id FROM vectors
+      SELECT id FROM ${this.tableName}
       ORDER BY last_accessed ASC
       LIMIT ?
     `)
@@ -538,13 +569,32 @@ export class VectorStore {
         // Delete chunks first (FK cascades handle chunk_clusters and edges)
         db.prepare(`DELETE FROM chunks WHERE id IN (${placeholders})`).run(...evictIds);
         // Delete vectors
-        const result = db.prepare(`DELETE FROM vectors WHERE id IN (${placeholders})`).run(...evictIds);
+        const result = db.prepare(`DELETE FROM ${this.tableName} WHERE id IN (${placeholders})`).run(...evictIds);
         // Remove empty clusters
         db.prepare(`
       DELETE FROM clusters WHERE id NOT IN (
         SELECT DISTINCT cluster_id FROM chunk_clusters
       )
     `).run();
+        // Clean up index entries that referenced the deleted chunks
+        try {
+            const placeholdersForCleanup = sqlPlaceholders(evictIds.length);
+            db.prepare(`DELETE FROM index_entry_chunks WHERE chunk_id IN (${placeholdersForCleanup})`).run(...evictIds);
+            const orphaned = db.prepare(`SELECT id FROM index_entries WHERE id NOT IN (
+          SELECT DISTINCT index_entry_id FROM index_entry_chunks
+        )`).all();
+            if (orphaned.length > 0) {
+                const orphanIds = orphaned.map((r) => r.id);
+                const orphanPlaceholders = sqlPlaceholders(orphanIds.length);
+                db.prepare(`DELETE FROM index_entries WHERE id IN (${orphanPlaceholders})`).run(...orphanIds);
+                if (this.tableName === 'vectors') {
+                    db.prepare(`DELETE FROM index_vectors WHERE id IN (${orphanPlaceholders})`).run(...orphanIds);
+                }
+            }
+        }
+        catch {
+            // index_entry_chunks table may not exist yet
+        }
         // Remove from memory
         for (const id of evictIds) {
             this.vectors.delete(id);
@@ -554,10 +604,20 @@ export class VectorStore {
     }
 }
 /**
- * Singleton vector store instance.
+ * Singleton vector store instance for chunk embeddings.
  *
- * Use this for all vector operations to ensure consistent state.
+ * Use this for all chunk vector operations to ensure consistent state.
  * The instance lazy-loads vectors from SQLite on first operation.
  */
 export const vectorStore = new VectorStore();
+/**
+ * Singleton vector store instance for index entry embeddings.
+ *
+ * Stores embeddings in the `index_vectors` table and looks up metadata
+ * from the `index_entries` table for project/agent/team filtering.
+ */
+export const indexVectorStore = new VectorStore({
+    tableName: 'index_vectors',
+    metadataTable: 'index_entries',
+});
 //# sourceMappingURL=vector-store.js.map

package/dist/storage/vector-store.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "causantic",
-  "version": "0.9.3",
+  "version": "0.10.0",
   "description": "Long-term memory for Claude Code — local-first, graph-augmented, self-benchmarking",
   "type": "module",
   "private": false,
@@ -86,9 +86,11 @@
   "dependencies": {
     "@anthropic-ai/sdk": "^0.78.0",
     "@huggingface/transformers": "^3.4.1",
+    "@vscode/tree-sitter-wasm": "^0.3.0",
     "better-sqlite3-multiple-ciphers": "^12.6.2",
     "express": "^5.2.1",
-    "onnxruntime-node": "^1.24.1"
+    "onnxruntime-node": "^1.24.1",
+    "web-tree-sitter": "^0.26.6"
   },
   "overrides": {
     "qs": ">=6.14.2",