causantic 0.7.1 → 0.8.0

package/dist/cli/skill-templates.js.map

@@ -1 +1 @@
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package/dist/clusters/cluster-manager.d.ts

@@ -54,6 +54,10 @@ export interface ClusteringOptions {
     clusterThreshold?: number;
     /** Clear existing clusters before reclustering. Default: true. */
     clearExisting?: boolean;
+    /** Project ID for persisting HDBSCAN model (incremental clustering). */
+    projectId?: string;
+    /** Embedding model ID for model-aware persistence. Default: 'jina-small'. */
+    embeddingModel?: string;
 }
 /**
  * Cluster manager for running HDBSCAN and managing cluster assignments.
@@ -64,6 +68,25 @@ export declare class ClusterManager {
      * Run HDBSCAN on all chunks and create clusters.
      */
     recluster(options?: ClusteringOptions): Promise<ClusteringResult>;
+    /**
+     * Incrementally assign new chunks to existing clusters using a persisted HDBSCAN model.
+     *
+     * Falls back to full recluster if:
+     * - No persisted model exists
+     * - Embedding model has changed (model invalidation)
+     * - New chunk ratio exceeds incrementalClusterThreshold
+     *
+     * @returns Result from either incremental assignment or full recluster
+     */
+    incrementalAssign(newChunkIds: string[], options: {
+        projectId: string;
+        embeddingModel?: string;
+        incrementalThreshold?: number;
+    }): Promise<{
+        assigned: number;
+        noise: number;
+        usedFullRecluster: boolean;
+    }>;
     /**
      * Assign a new chunk to existing clusters based on angular distance.
      * Returns IDs of clusters the chunk was assigned to.

package/dist/clusters/cluster-manager.d.ts.map

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package/dist/clusters/cluster-manager.js

@@ -7,6 +7,8 @@ import { upsertCluster, assignChunksToClusters, getAllClusters, clearAllClusters
 import { angularDistance } from '../utils/angular-distance.js';
 import { getConfig } from '../config/memory-config.js';
 import { generateId } from '../storage/db.js';
+import { predictLabels } from './hdbscan/incremental.js';
+import { saveModel, loadModel } from './hdbscan-model-store.js';
 /**
  * Match new clusters to old clusters by Jaccard overlap, returning
  * a map of newClusterId → matched old snapshot. Uses greedy best-match
@@ -188,6 +190,12 @@ export class ClusterManager {
             }
         }
         const noiseCount = rawNoiseCount - reassignedNoiseIds.size;
+        // Save the HDBSCAN model for incremental assignment
+        const hdbscanModel = hdbscan.getModel();
+        if (hdbscanModel && options.projectId) {
+            const embeddingModel = options.embeddingModel ?? 'jina-small';
+            saveModel(options.projectId, embeddingModel, hdbscanModel, vectors.length);
+        }
         return {
             numClusters: clusterMembers.size,
             assignedChunks: assignments.length + noiseAssignments.length,
@@ -198,6 +206,132 @@ export class ClusterManager {
             durationMs: Date.now() - startTime,
         };
     }
+    /**
+     * Incrementally assign new chunks to existing clusters using a persisted HDBSCAN model.
+     *
+     * Falls back to full recluster if:
+     * - No persisted model exists
+     * - Embedding model has changed (model invalidation)
+     * - New chunk ratio exceeds incrementalClusterThreshold
+     *
+     * @returns Result from either incremental assignment or full recluster
+     */
+    async incrementalAssign(newChunkIds, options) {
+        const embeddingModel = options.embeddingModel ?? 'jina-small';
+        const clusterThreshold = options.incrementalThreshold ?? this.config.clusterThreshold;
+        // Try to load persisted model
+        const stored = loadModel(options.projectId, embeddingModel);
+        if (!stored) {
+            // No model or model mismatch — full recluster
+            await this.recluster({
+                projectId: options.projectId,
+                embeddingModel,
+            });
+            return { assigned: newChunkIds.length, noise: 0, usedFullRecluster: true };
+        }
+        // Check if threshold exceeded: too many new chunks since last recluster
+        const currentCount = await vectorStore.count();
+        const newSinceRecluster = currentCount - stored.chunkCount;
+        const ratio = stored.chunkCount > 0 ? newSinceRecluster / stored.chunkCount : 1;
+        if (ratio > this.config.incrementalClusterThreshold) {
+            // Too many new chunks — full recluster
+            await this.recluster({
+                projectId: options.projectId,
+                embeddingModel,
+            });
+            return { assigned: newChunkIds.length, noise: 0, usedFullRecluster: true };
+        }
+        // Get embeddings for new chunks
+        const newEmbeddings = [];
+        const validChunkIds = [];
+        for (const id of newChunkIds) {
+            const embedding = await vectorStore.get(id);
+            if (embedding) {
+                newEmbeddings.push(embedding);
+                validChunkIds.push(id);
+            }
+        }
+        if (newEmbeddings.length === 0) {
+            return { assigned: 0, noise: 0, usedFullRecluster: false };
+        }
+        // Load all embeddings for core distance computation
+        const allVectors = await vectorStore.getAllVectors();
+        const allEmbeddings = allVectors.map((v) => v.embedding);
+        // Reconstruct a full model with current embeddings for predictLabels
+        const fullModel = {
+            ...stored.model,
+            embeddings: allEmbeddings,
+        };
+        // Run incremental assignment
+        const labels = predictLabels(newEmbeddings, fullModel, this.config.minClusterSize, 'angular');
+        // Process assignments
+        const assignments = [];
+        let noiseCount = 0;
+        for (let i = 0; i < labels.length; i++) {
+            const label = labels[i];
+            if (label >= 0) {
+                // Find the cluster with this label's centroid
+                const centroid = stored.model.centroids.get(label);
+                if (centroid) {
+                    const distance = angularDistance(newEmbeddings[i], centroid);
+                    // Find matching cluster by centroid distance
+                    const clusters = getAllClusters();
+                    let bestCluster = null;
+                    let bestDist = Infinity;
+                    for (const cluster of clusters) {
+                        if (!cluster.centroid)
+                            continue;
+                        const d = angularDistance(centroid, cluster.centroid);
+                        if (d < bestDist) {
+                            bestDist = d;
+                            bestCluster = cluster;
+                        }
+                    }
+                    if (bestCluster && bestDist < 0.1) {
+                        assignments.push({
+                            chunkId: validChunkIds[i],
+                            clusterId: bestCluster.id,
+                            distance,
+                        });
+                    }
+                    else {
+                        noiseCount++;
+                    }
+                }
+                else {
+                    noiseCount++;
+                }
+            }
+            else {
+                noiseCount++;
+            }
+        }
+        // Assign noise points to nearest cluster (fallback)
+        if (noiseCount > 0) {
+            for (let i = 0; i < labels.length; i++) {
+                if (labels[i] >= 0)
+                    continue; // Already assigned
+                // Check if already assigned via the block above
+                if (assignments.some((a) => a.chunkId === validChunkIds[i]))
+                    continue;
+                const assigned = await this.assignChunkToClusters(validChunkIds[i], newEmbeddings[i], {
+                    threshold: clusterThreshold,
+                });
+                if (assigned.length > 0) {
+                    noiseCount--;
+                }
+            }
+        }
+        if (assignments.length > 0) {
+            assignChunksToClusters(assignments);
+            await this.updateCentroids();
+        }
+        return {
+            assigned: assignments.length + (validChunkIds.length - noiseCount - assignments.length),
+            noise: noiseCount,
+            usedFullRecluster: false,
+        };
+    }
     /**
      * Assign a new chunk to existing clusters based on angular distance.
      * Returns IDs of clusters the chunk was assigned to.

package/dist/clusters/cluster-manager.js.map

@@ -1 +1 @@
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package/dist/clusters/hdbscan-model-store.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Persistence layer for HDBSCAN models.
+ *
+ * Serializes/deserializes HDBSCANModel to SQLite BLOB for incremental clustering.
+ * Maps are converted to [key, value][] arrays for JSON.stringify (bare stringify produces {}).
+ * Excludes model.embeddings from the blob — too large. Load from vector store on demand.
+ */
+import type { HDBSCANModel } from './hdbscan/types.js';
+/**
+ * Serialize an HDBSCANModel to a JSON blob, excluding embeddings.
+ */
+declare function serializeModel(model: HDBSCANModel): Buffer;
+/**
+ * Deserialize a JSON blob back to an HDBSCANModel (embeddings will be empty).
+ */
+declare function deserializeModel(blob: Buffer): Omit<HDBSCANModel, 'embeddings'>;
+/**
+ * Save an HDBSCAN model for a project.
+ */
+export declare function saveModel(projectId: string, embeddingModel: string, model: HDBSCANModel, chunkCount: number): void;
+/**
+ * Load an HDBSCAN model for a project.
+ *
+ * Returns null if:
+ * - No model exists for this project
+ * - Stored embedding_model doesn't match currentEmbeddingModel (model invalidation)
+ */
+export declare function loadModel(projectId: string, currentEmbeddingModel: string): {
+    model: Omit<HDBSCANModel, 'embeddings'>;
+    chunkCount: number;
+} | null;
+/**
+ * Delete saved model for a project.
+ */
+export declare function deleteModel(projectId: string): void;
+export { serializeModel as _serializeModel, deserializeModel as _deserializeModel };
+//# sourceMappingURL=hdbscan-model-store.d.ts.map

package/dist/clusters/hdbscan-model-store.d.ts.map

@@ -0,0 +1 @@
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package/dist/clusters/hdbscan-model-store.js

@@ -0,0 +1,73 @@
+/**
+ * Persistence layer for HDBSCAN models.
+ *
+ * Serializes/deserializes HDBSCANModel to SQLite BLOB for incremental clustering.
+ * Maps are converted to [key, value][] arrays for JSON.stringify (bare stringify produces {}).
+ * Excludes model.embeddings from the blob — too large. Load from vector store on demand.
+ */
+import { getDb } from '../storage/db.js';
+/**
+ * Serialize an HDBSCANModel to a JSON blob, excluding embeddings.
+ */
+function serializeModel(model) {
+    const serialized = {
+        coreDistances: model.coreDistances,
+        labels: model.labels,
+        centroids: Array.from(model.centroids.entries()),
+        exemplars: Array.from(model.exemplars.entries()),
+        lambdaValues: model.lambdaValues,
+        clusterMaxLambda: Array.from(model.clusterMaxLambda.entries()),
+    };
+    return Buffer.from(JSON.stringify(serialized));
+}
+/**
+ * Deserialize a JSON blob back to an HDBSCANModel (embeddings will be empty).
+ */
+function deserializeModel(blob) {
+    const parsed = JSON.parse(blob.toString('utf-8'));
+    return {
+        coreDistances: parsed.coreDistances,
+        labels: parsed.labels,
+        centroids: new Map(parsed.centroids),
+        exemplars: new Map(parsed.exemplars),
+        lambdaValues: parsed.lambdaValues,
+        clusterMaxLambda: new Map(parsed.clusterMaxLambda),
+    };
+}
+/**
+ * Save an HDBSCAN model for a project.
+ */
+export function saveModel(projectId, embeddingModel, model, chunkCount) {
+    const db = getDb();
+    const blob = serializeModel(model);
+    db.prepare(`INSERT OR REPLACE INTO hdbscan_models (project_id, embedding_model, model_blob, chunk_count, created_at)
+     VALUES (?, ?, ?, ?, CURRENT_TIMESTAMP)`).run(projectId, embeddingModel, blob, chunkCount);
+}
+/**
+ * Load an HDBSCAN model for a project.
+ *
+ * Returns null if:
+ * - No model exists for this project
+ * - Stored embedding_model doesn't match currentEmbeddingModel (model invalidation)
+ */
+export function loadModel(projectId, currentEmbeddingModel) {
+    const db = getDb();
+    const row = db
+        .prepare('SELECT model_blob, embedding_model, chunk_count FROM hdbscan_models WHERE project_id = ? AND embedding_model = ?')
+        .get(projectId, currentEmbeddingModel);
+    if (!row) {
+        return null;
+    }
+    const model = deserializeModel(row.model_blob);
+    return { model, chunkCount: row.chunk_count };
+}
+/**
+ * Delete saved model for a project.
+ */
+export function deleteModel(projectId) {
+    const db = getDb();
+    db.prepare('DELETE FROM hdbscan_models WHERE project_id = ?').run(projectId);
+}
+// Re-export for testing
+export { serializeModel as _serializeModel, deserializeModel as _deserializeModel };
+//# sourceMappingURL=hdbscan-model-store.js.map

package/dist/clusters/hdbscan-model-store.js.map

@@ -0,0 +1 @@
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package/dist/config/loader.d.ts

@@ -14,6 +14,8 @@ export interface ExternalConfig {
     clustering?: {
         threshold?: number;
         minClusterSize?: number;
+        /** Ratio of new chunks (vs total) that triggers a full recluster. Default: 0.3. */
+        incrementalThreshold?: number;
     };
     traversal?: {
         maxDepth?: number;
@@ -29,6 +31,8 @@ export interface ExternalConfig {
     llm?: {
         clusterRefreshModel?: string;
         refreshRateLimitPerMin?: number;
+        /** Enable LLM-based cluster labelling. Requires Anthropic API key. Default: true. */
+        enableLabelling?: boolean;
     };
     encryption?: {
         enabled?: boolean;
@@ -45,6 +49,8 @@ export interface ExternalConfig {
     embedding?: {
         /** Device for embedding inference: 'auto' | 'coreml' | 'cuda' | 'cpu' | 'wasm'. Default: 'auto'. */
         device?: string;
+        /** Embedding model ID from model registry. Default: 'jina-small'. */
+        model?: string;
     };
     maintenance?: {
         /** Hour of day (0-23) to run reclustering. Default: 2. */
@@ -53,6 +59,8 @@ export interface ExternalConfig {
     retrieval?: {
         /** MMR lambda: 0 = pure diversity, 1 = pure relevance. Default: 0.7 */
         mmrLambda?: number;
+        /** Feedback weight for cluster expansion scoring. Default: 0.1 */
+        feedbackWeight?: number;
     };
     recency?: {
         /** Amplitude of the time-decay boost (multiplied by exp decay). Default: 0.3 */

package/dist/config/loader.d.ts.map

@@ -1 +1 @@
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package/dist/config/loader.js

@@ -11,6 +11,7 @@
 import { existsSync, readFileSync } from 'node:fs';
 import { join } from 'node:path';
 import { resolvePath, DEFAULT_CONFIG } from './memory-config.js';
+import { getAllModelIds } from '../models/model-registry.js';
 import { createLogger } from '../utils/logger.js';
 const log = createLogger('config-loader');
 /** Default external config values */
@@ -18,6 +19,7 @@ const EXTERNAL_DEFAULTS = {
     clustering: {
         threshold: 0.1,
         minClusterSize: 4,
+        incrementalThreshold: 0.3,
     },
     traversal: {
         maxDepth: 50, // Safety net for chain walk depth
@@ -33,6 +35,7 @@ const EXTERNAL_DEFAULTS = {
     llm: {
         clusterRefreshModel: 'claude-3-haiku-20240307',
         refreshRateLimitPerMin: 30,
+        enableLabelling: true,
     },
     encryption: {
         enabled: false,
@@ -46,12 +49,14 @@ const EXTERNAL_DEFAULTS = {
     },
     embedding: {
         device: 'auto',
+        model: 'jina-small',
     },
     maintenance: {
         clusterHour: 2,
     },
     retrieval: {
         mmrLambda: 0.7,
+        feedbackWeight: 0.1,
     },
     recency: {
         decayFactor: 0.3,
@@ -94,6 +99,10 @@ function loadEnvConfig() {
         config.clustering = config.clustering ?? {};
         config.clustering.minClusterSize = parseInt(process.env.CAUSANTIC_CLUSTERING_MIN_CLUSTER_SIZE, 10);
     }
+    if (process.env.CAUSANTIC_CLUSTERING_INCREMENTAL_THRESHOLD) {
+        config.clustering = config.clustering ?? {};
+        config.clustering.incrementalThreshold = parseFloat(process.env.CAUSANTIC_CLUSTERING_INCREMENTAL_THRESHOLD);
+    }
     // Traversal
     if (process.env.CAUSANTIC_TRAVERSAL_MAX_DEPTH) {
         config.traversal = config.traversal ?? {};
@@ -126,6 +135,10 @@ function loadEnvConfig() {
         config.llm = config.llm ?? {};
         config.llm.refreshRateLimitPerMin = parseInt(process.env.CAUSANTIC_LLM_REFRESH_RATE_LIMIT, 10);
     }
+    if (process.env.CAUSANTIC_LLM_ENABLE_LABELLING) {
+        config.llm = config.llm ?? {};
+        config.llm.enableLabelling = process.env.CAUSANTIC_LLM_ENABLE_LABELLING === 'true';
+    }
     // Encryption
     if (process.env.CAUSANTIC_ENCRYPTION_ENABLED) {
         config.encryption = config.encryption ?? {};
@@ -162,11 +175,19 @@ function loadEnvConfig() {
         config.embedding = config.embedding ?? {};
         config.embedding.device = process.env.CAUSANTIC_EMBEDDING_DEVICE;
     }
+    if (process.env.CAUSANTIC_EMBEDDING_MODEL) {
+        config.embedding = config.embedding ?? {};
+        config.embedding.model = process.env.CAUSANTIC_EMBEDDING_MODEL;
+    }
     // Retrieval
     if (process.env.CAUSANTIC_RETRIEVAL_MMR_LAMBDA) {
         config.retrieval = config.retrieval ?? {};
         config.retrieval.mmrLambda = parseFloat(process.env.CAUSANTIC_RETRIEVAL_MMR_LAMBDA);
     }
+    if (process.env.CAUSANTIC_RETRIEVAL_FEEDBACK_WEIGHT) {
+        config.retrieval = config.retrieval ?? {};
+        config.retrieval.feedbackWeight = parseFloat(process.env.CAUSANTIC_RETRIEVAL_FEEDBACK_WEIGHT);
+    }
     // Recency
     if (process.env.CAUSANTIC_RECENCY_DECAY_FACTOR) {
         config.recency = config.recency ?? {};
@@ -245,12 +266,24 @@ export function validateExternalConfig(config) {
             errors.push('vectors.maxCount must be >= 0 (0 = unlimited)');
         }
     }
+    // Embedding validation
+    if (config.embedding?.model !== undefined) {
+        const validModels = getAllModelIds();
+        if (!validModels.includes(config.embedding.model)) {
+            errors.push(`embedding.model '${config.embedding.model}' is not a registered model. Available: ${validModels.join(', ')}`);
+        }
+    }
     // Retrieval validation
     if (config.retrieval?.mmrLambda !== undefined) {
         if (config.retrieval.mmrLambda < 0 || config.retrieval.mmrLambda > 1) {
             errors.push('retrieval.mmrLambda must be between 0 and 1 (inclusive)');
         }
     }
+    if (config.retrieval?.feedbackWeight !== undefined) {
+        if (config.retrieval.feedbackWeight < 0 || config.retrieval.feedbackWeight > 1) {
+            errors.push('retrieval.feedbackWeight must be between 0 and 1 (inclusive)');
+        }
+    }
     return errors;
 }
 /**
@@ -317,6 +350,8 @@ export function toRuntimeConfig(external) {
         // Clustering
         clusterThreshold: external.clustering.threshold ?? DEFAULT_CONFIG.clusterThreshold,
         minClusterSize: external.clustering.minClusterSize ?? DEFAULT_CONFIG.minClusterSize,
+        // Clustering (incremental)
+        incrementalClusterThreshold: external.clustering.incrementalThreshold ?? DEFAULT_CONFIG.incrementalClusterThreshold,
         // Chain walking
         maxChainDepth: external.traversal.maxDepth ?? DEFAULT_CONFIG.maxChainDepth,
         // Tokens
@@ -328,10 +363,13 @@ export function toRuntimeConfig(external) {
         // LLM
         clusterRefreshModel: external.llm.clusterRefreshModel ?? DEFAULT_CONFIG.clusterRefreshModel,
         refreshRateLimitPerMin: external.llm.refreshRateLimitPerMin ?? DEFAULT_CONFIG.refreshRateLimitPerMin,
+        // Embedding
+        embeddingModel: external.embedding?.model ?? DEFAULT_CONFIG.embeddingModel,
         // Retrieval
         mmrReranking: {
             lambda: external.retrieval?.mmrLambda ?? DEFAULT_CONFIG.mmrReranking.lambda,
         },
+        feedbackWeight: external.retrieval?.feedbackWeight ?? DEFAULT_CONFIG.feedbackWeight,
         // Recency
         recency: {
             decayFactor: external.recency?.decayFactor ?? DEFAULT_CONFIG.recency.decayFactor,

package/dist/config/loader.js.map

@@ -1 +1 @@
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