causantic 0.5.1 → 0.5.3

package/README.md

@@ -4,6 +4,7 @@
 [![CI](https://github.com/Entrolution/causantic/actions/workflows/ci.yml/badge.svg)](https://github.com/Entrolution/causantic/actions/workflows/ci.yml)
 [![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](LICENSE)
 [![Node.js](https://img.shields.io/badge/node-%3E%3D20-brightgreen)](https://nodejs.org)
+[![Claude Code](https://img.shields.io/badge/Claude_Code-%3E%3D5.1-blueviolet)](https://docs.anthropic.com/en/docs/claude-code)
 [![TypeScript](https://img.shields.io/badge/TypeScript-native-blue)](https://www.typescriptlang.org/)
 
 **Long-term memory for Claude Code — local-first, graph-augmented, self-benchmarking.**
@@ -37,29 +38,29 @@ Developers using Claude Code who want their AI assistant to **remember across se
 
 ## Why Causantic?
 
-Most AI memory systems use vector embeddings for similarity search. Causantic does too — but adds a **causal graph** that tracks *relationships* between memory chunks, **BM25 keyword search** for exact matches, and **HDBSCAN clustering** for topic expansion. The result:
+Most AI memory systems use vector embeddings for similarity search. Causantic does too — but adds a **causal graph** that tracks _relationships_ between memory chunks, **BM25 keyword search** for exact matches, and **HDBSCAN clustering** for topic expansion. The result:
 
-| | Vector Search Only | Causantic |
-|---|---|---|
-| **Finds similar content** | Yes | Yes |
-| **Finds lexically relevant content** | No | Yes (BM25 keyword search) |
-| **Finds related context** | No | Yes (causal edges) |
-| **Finds topically related context** | No | Yes (cluster expansion) |
-| **Temporal awareness** | Wall-clock decay | Episodic chain walking |
-| **Context augmentation** | 1× | **2.46×** (chain walking adds episodic narrative) |
-| **Handles project switches** | Breaks continuity | Preserves causality |
-| **Bidirectional queries** | Forward only | Backward + Forward |
+|                                      | Vector Search Only | Causantic                                         |
+| ------------------------------------ | ------------------ | ------------------------------------------------- |
+| **Finds similar content**            | Yes                | Yes                                               |
+| **Finds lexically relevant content** | No                 | Yes (BM25 keyword search)                         |
+| **Finds related context**            | No                 | Yes (causal edges)                                |
+| **Finds topically related context**  | No                 | Yes (cluster expansion)                           |
+| **Temporal awareness**               | Wall-clock decay   | Episodic chain walking                            |
+| **Context augmentation**             | 1×                 | **2.46×** (chain walking adds episodic narrative) |
+| **Handles project switches**         | Breaks continuity  | Preserves causality                               |
+| **Bidirectional queries**            | Forward only       | Backward + Forward                                |
 
 ### How It Compares
 
-| System | Local-First | Temporal Decay | Graph Structure | Self-Benchmarking |
-|--------|:-----------:|:--------------:|:--------------:|:-----------------:|
-| **Causantic** | **Yes** | **Chain walking** | **Causal graph** | **Yes** |
-| Mem0 | No (Cloud) | None | Paid add-on | No |
-| Cognee | Self-hostable | None | Triplet extraction | No |
-| Letta/MemGPT | Self-hostable | Summarization | None | No |
-| Zep | Enterprise | Bi-temporal | Temporal KG | No |
-| GraphRAG | Self-hostable | Static corpus | Hierarchical | No |
+| System        |  Local-First  |  Temporal Decay   |  Graph Structure   | Self-Benchmarking |
+| ------------- | :-----------: | :---------------: | :----------------: | :---------------: |
+| **Causantic** |    **Yes**    | **Chain walking** |  **Causal graph**  |      **Yes**      |
+| Mem0          |  No (Cloud)   |       None        |    Paid add-on     |        No         |
+| Cognee        | Self-hostable |       None        | Triplet extraction |        No         |
+| Letta/MemGPT  | Self-hostable |   Summarization   |        None        |        No         |
+| Zep           |  Enterprise   |    Bi-temporal    |    Temporal KG     |        No         |
+| GraphRAG      | Self-hostable |   Static corpus   |    Hierarchical    |        No         |
 
 See [Landscape Analysis](docs/research/approach/landscape-analysis.md) for detailed per-system analysis.
 
@@ -69,7 +70,7 @@ See [Landscape Analysis](docs/research/approach/landscape-analysis.md) for detai
 All data stays on your machine. Optional per-chunk encryption (ChaCha20-Poly1305) with keys stored in your system keychain. No cloud dependency.
 
 **2. Hybrid BM25 + Vector Search**
-Vector search finds chunks that *look similar*. BM25 keyword search finds chunks with *exact lexical matches* — function names, error codes, CLI flags. Both run in parallel and fuse via Reciprocal Rank Fusion (RRF).
+Vector search finds chunks that _look similar_. BM25 keyword search finds chunks with _exact lexical matches_ — function names, error codes, CLI flags. Both run in parallel and fuse via Reciprocal Rank Fusion (RRF).
 
 **3. Sequential Causal Graph with Episodic Chain Walking**
 Chunks are connected in a sequential linked list — intra-turn chunks chained sequentially, inter-turn edges linking last→first, cross-session edges bridging sessions. The `recall` tool walks this graph backward to reconstruct episodic narratives; `predict` walks forward. Chains are scored by cosine similarity per token, producing ordered narratives where each chunk adds new information.
@@ -157,17 +158,17 @@ Measure how well your memory system is working with built-in benchmarks. Health,
 
 The MCP server exposes nine tools:
 
-| Tool | Description |
-|------|-------------|
-| `search` | Semantic discovery — "what do I know about X?" Vector + keyword + RRF + cluster expansion. |
-| `recall` | Episodic memory — "how did we solve X?" Seeds → backward chain walk → ordered narrative. Includes chain walk diagnostics on fallback. |
-| `predict` | Forward episodic — "what's likely next?" Seeds → forward chain walk → ordered narrative. Includes chain walk diagnostics on fallback. |
-| `list-projects` | Discover available projects with chunk counts and date ranges. |
-| `list-sessions` | Browse sessions for a project with time filtering. |
-| `reconstruct` | Rebuild session context chronologically — "what did I work on yesterday?" |
-| `hook-status` | Check when hooks last ran and whether they succeeded. |
-| `stats` | Memory statistics — version, chunk/edge/cluster counts, per-project breakdowns. |
-| `forget` | Delete chunks by project, time range, session, or semantic query. Defaults to dry-run preview. |
+| Tool            | Description                                                                                                                           |
+| --------------- | ------------------------------------------------------------------------------------------------------------------------------------- |
+| `search`        | Semantic discovery — "what do I know about X?" Vector + keyword + RRF + cluster expansion.                                            |
+| `recall`        | Episodic memory — "how did we solve X?" Seeds → backward chain walk → ordered narrative. Includes chain walk diagnostics on fallback. |
+| `predict`       | Forward episodic — "what's likely next?" Seeds → forward chain walk → ordered narrative. Includes chain walk diagnostics on fallback. |
+| `list-projects` | Discover available projects with chunk counts and date ranges.                                                                        |
+| `list-sessions` | Browse sessions for a project with time filtering.                                                                                    |
+| `reconstruct`   | Rebuild session context chronologically — "what did I work on yesterday?"                                                             |
+| `hook-status`   | Check when hooks last ran and whether they succeeded.                                                                                 |
+| `stats`         | Memory statistics — version, chunk/edge/cluster counts, per-project breakdowns.                                                       |
+| `forget`        | Delete chunks by project, time range, session, or semantic query. Defaults to dry-run preview.                                        |
 
 ### Claude Code Integration
 
@@ -190,22 +191,22 @@ Or run `npx causantic init` to configure automatically.
 
 Causantic installs 14 Claude Code slash commands (via `npx causantic init`) for natural-language interaction with memory:
 
-| Skill | Description |
-|-------|-------------|
-| `/causantic-recall [query]` | Reconstruct how something happened — walks backward through causal chains (how did we solve X?) |
-| `/causantic-search [query]` | Broad discovery — find everything memory knows about a topic (what do I know about X?) |
-| `/causantic-predict <context>` | Surface what came after similar past situations — walks forward through causal chains (what's likely relevant next?) |
-| `/causantic-explain [question]` | Answer "why" questions using memory + codebase (why does X work this way?) |
-| `/causantic-debug [error]` | Search for prior encounters with an error (auto-extracts from conversation if no argument) |
-| `/causantic-resume` | Resume interrupted work — start-of-session briefing |
-| `/causantic-reconstruct [time]` | Replay a past session chronologically by time range |
-| `/causantic-summary [time]` | Factual recap of what was done across recent sessions |
-| `/causantic-list-projects` | Discover available projects in memory |
-| `/causantic-status` | Check system health and memory statistics |
-| `/causantic-crossref [pattern]` | Search across all projects for reusable patterns |
-| `/causantic-retro [scope]` | Surface recurring patterns, problems, and decisions across sessions |
-| `/causantic-cleanup` | Memory-informed codebase review and cleanup plan |
-| `/causantic-forget [query]` | Delete memory by topic, time range, or session (always previews first) |
+| Skill                           | Description                                                                                                          |
+| ------------------------------- | -------------------------------------------------------------------------------------------------------------------- |
+| `/causantic-recall [query]`     | Reconstruct how something happened — walks backward through causal chains (how did we solve X?)                      |
+| `/causantic-search [query]`     | Broad discovery — find everything memory knows about a topic (what do I know about X?)                               |
+| `/causantic-predict <context>`  | Surface what came after similar past situations — walks forward through causal chains (what's likely relevant next?) |
+| `/causantic-explain [question]` | Answer "why" questions using memory + codebase (why does X work this way?)                                           |
+| `/causantic-debug [error]`      | Search for prior encounters with an error (auto-extracts from conversation if no argument)                           |
+| `/causantic-resume`             | Resume interrupted work — start-of-session briefing                                                                  |
+| `/causantic-reconstruct [time]` | Replay a past session chronologically by time range                                                                  |
+| `/causantic-summary [time]`     | Factual recap of what was done across recent sessions                                                                |
+| `/causantic-list-projects`      | Discover available projects in memory                                                                                |
+| `/causantic-status`             | Check system health and memory statistics                                                                            |
+| `/causantic-crossref [pattern]` | Search across all projects for reusable patterns                                                                     |
+| `/causantic-retro [scope]`      | Surface recurring patterns, problems, and decisions across sessions                                                  |
+| `/causantic-cleanup`            | Memory-informed codebase review and cleanup plan                                                                     |
+| `/causantic-forget [query]`     | Delete memory by topic, time range, or session (always previews first)                                               |
 
 Skills are installed to `~/.claude/skills/causantic-*/` and work as slash commands in Claude Code. They orchestrate the MCP tools above with structured prompts tailored to each use case.
 
@@ -248,7 +249,7 @@ Create `causantic.config.json` in your project root:
 {
   "$schema": "https://raw.githubusercontent.com/Entrolution/causantic/main/config.schema.json",
   "clustering": {
-    "threshold": 0.10,
+    "threshold": 0.1,
     "minClusterSize": 4
   },
   "vectors": {
@@ -282,13 +283,13 @@ See [Security Guide](docs/guides/security.md).
 
 Built on rigorous experimentation across 75 sessions and 297+ queries:
 
-| Experiment | Result | Notes |
-|------------|--------|-------|
-| Chain Walking (v0.3) | **2.46×** context | vs vector-only, 297 queries, 15 projects |
-| Topic Detection | 0.998 AUC | near-perfect accuracy |
-| Clustering | F1=0.940 | 100% precision |
-| Thinking Block Removal | +0.063 AUC | embedding quality improvement |
-| Collection Benchmark | **64/100** | health, retrieval, chain quality, latency |
+| Experiment             | Result            | Notes                                     |
+| ---------------------- | ----------------- | ----------------------------------------- |
+| Chain Walking (v0.3)   | **2.46×** context | vs vector-only, 297 queries, 15 projects  |
+| Topic Detection        | 0.998 AUC         | near-perfect accuracy                     |
+| Clustering             | F1=0.940          | 100% precision                            |
+| Thinking Block Removal | +0.063 AUC        | embedding quality improvement             |
+| Collection Benchmark   | **64/100**        | health, retrieval, chain quality, latency |
 
 > **Note**: An earlier version (v0.2) reported 4.65× augmentation using sum-product graph traversal with m×n all-pairs edges (492 queries, 25 projects). That architecture was replaced in v0.3 after collection benchmarks showed graph traversal contributing only ~2% of results. See [lessons learned](docs/research/experiments/lessons-learned.md) for the full story.
 
@@ -304,7 +305,7 @@ The name reflects how the causal graph's value is **structural ordering** — wh
 - **Initial ingestion time**: Large session histories take time to parse, embed, and cluster. This is a one-time cost.
 - **Edge quality dependency**: Chain walking depends on connected edges. Sparse or orphaned chunks fall back to ranked search results.
 - **Collection size effects**: Benchmark scores improve as more sessions are ingested. Small collections (<100 chunks) won't benefit much from chain walking or clustering.
-- **Claude Code specific**: The parser assumes Claude Code session format (JSONL transcripts). Not a general-purpose memory system.
+- **Claude Code 5.1+ required**: Hooks use `async` mode which requires Claude Code 5.1 or later. The parser assumes Claude Code session format (JSONL transcripts). Not a general-purpose memory system.
 - **Local compute**: Embedding inference runs on your hardware. Apple Silicon (CoreML) and NVIDIA GPUs are supported; CPU-only is slower.
 
 ## Maintenance

package/config.schema.json

@@ -13,7 +13,7 @@
           "type": "number",
           "minimum": 0.01,
           "maximum": 0.5,
-          "default": 0.10,
+          "default": 0.1,
           "description": "Angular distance threshold for cluster assignment"
         },
         "minClusterSize": {

package/dist/cli/commands/archive.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"archive.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/archive.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,aAAa,CAAC;AAa3C,eAAO,MAAM,aAAa,EAAE,OAkE3B,CAAC;AAEF,eAAO,MAAM,aAAa,EAAE,OAwD3B,CAAC"}

package/dist/cli/commands/archive.js

@@ -1,13 +1,31 @@
 import { promptPassword, isEncryptedArchive } from '../utils.js';
+function formatSize(bytes) {
+    if (bytes < 1024)
+        return `${bytes} B`;
+    if (bytes < 1024 * 1024)
+        return `${(bytes / 1024).toFixed(1)} KB`;
+    return `${(bytes / (1024 * 1024)).toFixed(1)} MB`;
+}
+function formatCount(n) {
+    return n.toLocaleString();
+}
 export const exportCommand = {
     name: 'export',
     description: 'Export memory data',
-    usage: 'causantic export --output <path> [--no-encrypt]',
+    usage: 'causantic export --output <path> [--no-encrypt] [--projects <slugs>] [--redact-paths] [--redact-code] [--no-vectors]',
     handler: async (args) => {
         const { exportArchive } = await import('../../storage/archive.js');
         const outputIndex = args.indexOf('--output');
         const outputPath = outputIndex >= 0 ? args[outputIndex + 1] : 'causantic-backup.causantic';
         const noEncrypt = args.includes('--no-encrypt');
+        const noVectors = args.includes('--no-vectors');
+        const redactPaths = args.includes('--redact-paths');
+        const redactCode = args.includes('--redact-code');
+        // Parse --projects flag
+        const projectsIndex = args.indexOf('--projects');
+        const projects = projectsIndex >= 0 && args[projectsIndex + 1]
+            ? args[projectsIndex + 1].split(',').map((s) => s.trim())
+            : undefined;
         let password;
         if (!noEncrypt) {
             password = process.env.CAUSANTIC_EXPORT_PASSWORD;
@@ -30,25 +48,41 @@ export const exportCommand = {
                 process.exit(2);
             }
         }
-        await exportArchive({
+        const result = await exportArchive({
             outputPath,
             password,
+            projects,
+            redactPaths,
+            redactCode,
+            noVectors,
         });
-        console.log(`Exported to ${outputPath}`);
+        const parts = [
+            `${formatCount(result.chunkCount)} chunks`,
+            `${formatCount(result.edgeCount)} edges`,
+            `${formatCount(result.clusterCount)} clusters`,
+            `${formatCount(result.vectorCount)} vectors`,
+        ];
+        const suffix = [result.compressed ? 'compressed' : null, result.encrypted ? 'encrypted' : null]
+            .filter(Boolean)
+            .join(', ');
+        console.log(`Exported: ${parts.join(', ')} (${formatSize(result.fileSize)} ${suffix})`);
+        console.log(`File: ${outputPath}`);
     },
 };
 export const importCommand = {
     name: 'import',
     description: 'Import memory data',
-    usage: 'causantic import <file> [--merge]',
+    usage: 'causantic import <file> [--merge] [--dry-run]',
     handler: async (args) => {
         if (args.length === 0) {
             console.error('Error: File path required');
             process.exit(2);
         }
         const { importArchive } = await import('../../storage/archive.js');
-        const inputPath = args[0];
+        // Find file path (first arg that isn't a flag)
+        const inputPath = args.find((a) => !a.startsWith('--'));
         const merge = args.includes('--merge');
+        const dryRun = args.includes('--dry-run');
         const encrypted = await isEncryptedArchive(inputPath);
         let password;
         if (encrypted) {
@@ -65,12 +99,24 @@ export const importCommand = {
                 process.exit(2);
             }
         }
-        await importArchive({
+        const result = await importArchive({
             inputPath,
             password,
             merge,
+            dryRun,
         });
-        console.log('Import complete.');
+        const parts = [
+            `${formatCount(result.chunkCount)} chunks`,
+            `${formatCount(result.edgeCount)} edges`,
+            `${formatCount(result.clusterCount)} clusters`,
+            `${formatCount(result.vectorCount)} vectors`,
+        ];
+        if (result.dryRun) {
+            console.log(`Dry run — would import: ${parts.join(', ')}`);
+        }
+        else {
+            console.log(`Imported: ${parts.join(', ')}`);
+        }
     },
 };
 //# sourceMappingURL=archive.js.map

package/dist/cli/commands/archive.js.map

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package/dist/dashboard/client/index.html

@@ -5,7 +5,7 @@
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>Causantic Dashboard</title>
     <link rel="icon" type="image/svg+xml" href="data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 32 32'%3E%3Ctext y='28' font-size='28'%3E%F0%9F%A7%A0%3C/text%3E%3C/svg%3E" />
-    <script type="module" crossorigin src="/assets/index-DtSi-1L8.js"></script>
+    <script type="module" crossorigin src="/assets/index-BjtuXMeN.js"></script>
     <link rel="stylesheet" crossorigin href="/assets/index-DdImwNQ0.css">
   </head>
   <body>

package/dist/ingest/batch-ingest.d.ts

@@ -79,10 +79,6 @@ export interface BatchIngestResult {
  * Discover session JSONL files in a directory.
  */
 export declare function discoverSessions(dir: string): Promise<string[]>;
-/**
- * Filter out already-ingested sessions.
- */
-export declare function filterAlreadyIngested(sessionPaths: string[]): Promise<string[]>;
 /**
  * Batch ingest sessions from paths.
  */

package/dist/ingest/batch-ingest.d.ts.map

@@ -1 +1 @@
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package/dist/ingest/batch-ingest.js

@@ -62,14 +62,6 @@ export async function discoverSessions(dir) {
     withStats.sort((a, b) => a.mtime - b.mtime);
     return withStats.map((s) => s.path);
 }
-/**
- * Filter out already-ingested sessions.
- */
-export async function filterAlreadyIngested(sessionPaths) {
-    // We need to check by session ID, not path
-    // For now, just return all paths - the ingest function will skip
-    return sessionPaths;
-}
 /**
  * Batch ingest sessions from paths.
  */

package/dist/ingest/batch-ingest.js.map

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package/dist/ingest/index.d.ts

@@ -3,7 +3,7 @@
  */
 export { ingestSession, chunkToInput } from './ingest-session.js';
 export type { IngestOptions, IngestResult } from './ingest-session.js';
-export { batchIngest, batchIngestDirectory, discoverSessions, filterAlreadyIngested, } from './batch-ingest.js';
+export { batchIngest, batchIngestDirectory, discoverSessions } from './batch-ingest.js';
 export type { BatchIngestOptions, BatchIngestResult } from './batch-ingest.js';
 export { detectCausalTransitions, detectTransitions, getTimeGapMs } from './edge-detector.js';
 export type { TransitionResult, DetectionOptions } from './edge-detector.js';

package/dist/ingest/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/ingest/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAClE,YAAY,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAGvE,OAAO,EAAE,WAAW,EAAE,oBAAoB,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AACxF,YAAY,EAAE,kBAAkB,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AAG/E,OAAO,EAAE,uBAAuB,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAC9F,YAAY,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAG7E,OAAO,EACL,0BAA0B,EAC1B,iBAAiB,EACjB,uBAAuB,EACvB,eAAe,EACf,iBAAiB,GAClB,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AAG5D,OAAO,EAAE,gBAAgB,EAAE,eAAe,EAAE,kBAAkB,EAAE,MAAM,2BAA2B,CAAC;AAClG,YAAY,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAC"}

package/dist/ingest/index.js

@@ -4,7 +4,7 @@
 // Main ingestion
 export { ingestSession, chunkToInput } from './ingest-session.js';
 // Batch ingestion
-export { batchIngest, batchIngestDirectory, discoverSessions, filterAlreadyIngested, } from './batch-ingest.js';
+export { batchIngest, batchIngestDirectory, discoverSessions } from './batch-ingest.js';
 // Edge detection
 export { detectCausalTransitions, detectTransitions, getTimeGapMs } from './edge-detector.js';
 // Edge creation

package/dist/ingest/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ingest/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,iBAAiB;AACjB,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAGlE,kBAAkB;AAClB,OAAO,EAAE,WAAW,EAAE,oBAAoB,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAGxF,iBAAiB;AACjB,OAAO,EAAE,uBAAuB,EAAE,iBAAiB,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAG9F,gBAAgB;AAChB,OAAO,EACL,0BAA0B,EAC1B,iBAAiB,EACjB,uBAAuB,EACvB,eAAe,EACf,iBAAiB,GAClB,MAAM,mBAAmB,CAAC;AAG3B,wBAAwB;AACxB,OAAO,EAAE,gBAAgB,EAAE,eAAe,EAAE,kBAAkB,EAAE,MAAM,2BAA2B,CAAC"}

package/dist/storage/archive.d.ts

@@ -1,7 +1,8 @@
 /**
  * Export/import functionality for Causantic memory data.
  *
- * Supports encrypted and unencrypted archives.
+ * Supports encrypted and unencrypted archives with optional gzip compression.
+ * Archive format v1.1 adds vector embeddings and full cluster data.
  */
 /** Archive metadata */
 export interface ArchiveMetadata {
@@ -10,12 +11,16 @@ export interface ArchiveMetadata {
     chunkCount: number;
     edgeCount: number;
     clusterCount: number;
+    vectorCount: number;
+    embeddingDimensions: number | null;
     projects: string[];
 }
 /** Chunk data for export */
 export interface ExportedChunk {
     id: string;
+    sessionId: string;
     sessionSlug: string;
+    projectPath: string | null;
     content: string;
     startTime: string;
     endTime: string;
@@ -23,18 +28,33 @@ export interface ExportedChunk {
 }
 /** Edge data for export */
 export interface ExportedEdge {
+    id: string;
     source: string;
     target: string;
     type: string;
-    referenceType: string;
+    referenceType: string | null;
     weight: number;
+    linkCount: number;
+}
+/** Cluster member with distance */
+export interface ClusterMember {
+    chunkId: string;
+    distance: number;
 }
 /** Cluster data for export */
 export interface ExportedCluster {
     id: string;
-    name: string;
+    name: string | null;
     description: string | null;
-    memberChunkIds: string[];
+    centroid: number[] | null;
+    exemplarIds: string[] | null;
+    membershipHash: string | null;
+    members: ClusterMember[];
+}
+/** Vector data for export */
+export interface ExportedVector {
+    chunkId: string;
+    embedding: number[];
 }
 /** Complete archive structure */
 export interface Archive {
@@ -45,6 +65,7 @@ export interface Archive {
     chunks: ExportedChunk[];
     edges: ExportedEdge[];
     clusters: ExportedCluster[];
+    vectors: ExportedVector[];
 }
 /** Export options */
 export interface ExportOptions {
@@ -58,6 +79,18 @@ export interface ExportOptions {
     redactPaths?: boolean;
     /** Redact code blocks */
     redactCode?: boolean;
+    /** Skip vector embeddings */
+    noVectors?: boolean;
+}
+/** Export result */
+export interface ExportResult {
+    chunkCount: number;
+    edgeCount: number;
+    clusterCount: number;
+    vectorCount: number;
+    fileSize: number;
+    compressed: boolean;
+    encrypted: boolean;
 }
 /** Import options */
 export interface ImportOptions {
@@ -67,13 +100,33 @@ export interface ImportOptions {
     password?: string;
     /** Merge with existing data */
     merge?: boolean;
+    /** Validate and report without importing */
+    dryRun?: boolean;
 }
+/** Import result */
+export interface ImportResult {
+    chunkCount: number;
+    edgeCount: number;
+    clusterCount: number;
+    vectorCount: number;
+    dryRun: boolean;
+}
+/** Validation result */
+export interface ValidationResult {
+    valid: boolean;
+    errors: string[];
+    warnings: string[];
+}
+/**
+ * Validate an archive structure before import.
+ */
+export declare function validateArchive(archive: Archive): ValidationResult;
 /**
  * Export memory data to an archive.
  */
-export declare function exportArchive(options: ExportOptions): Promise<void>;
+export declare function exportArchive(options: ExportOptions): Promise<ExportResult>;
 /**
  * Import memory data from an archive.
  */
-export declare function importArchive(options: ImportOptions): Promise<void>;
+export declare function importArchive(options: ImportOptions): Promise<ImportResult>;
 //# sourceMappingURL=archive.d.ts.map

package/dist/storage/archive.d.ts.map

@@ -1 +1 @@
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package/dist/storage/archive.js

@@ -1,17 +1,80 @@
 /**
  * Export/import functionality for Causantic memory data.
  *
- * Supports encrypted and unencrypted archives.
+ * Supports encrypted and unencrypted archives with optional gzip compression.
+ * Archive format v1.1 adds vector embeddings and full cluster data.
  */
 import { readFileSync, writeFileSync, existsSync } from 'node:fs';
+import { gzipSync, gunzipSync } from 'node:zlib';
 import { encrypt, decrypt, serializeEncrypted, deserializeEncrypted } from './encryption.js';
-import { getDb } from './db.js';
+import { getDb, generateId } from './db.js';
+import { serializeEmbedding, deserializeEmbedding } from '../utils/embedding-utils.js';
 import { createLogger } from '../utils/logger.js';
 const log = createLogger('archive');
 /** Archive format version */
-const ARCHIVE_VERSION = '1.0';
+const ARCHIVE_VERSION = '1.1';
+/** Accepted versions on import */
+const ACCEPTED_VERSIONS = ['1.0', '1.1'];
 /** Magic bytes for encrypted archives */
 const ENCRYPTED_MAGIC = Buffer.from('CST\x00');
+/** Magic bytes for gzip */
+const GZIP_MAGIC = Buffer.from([0x1f, 0x8b]);
+/**
+ * Validate an archive structure before import.
+ */
+export function validateArchive(archive) {
+    const errors = [];
+    const warnings = [];
+    // Version check
+    if (!archive.version || !ACCEPTED_VERSIONS.includes(archive.version)) {
+        errors.push(`Unsupported archive version: ${archive.version ?? 'missing'}`);
+    }
+    // Format check
+    if (archive.format !== 'causantic-archive') {
+        errors.push(`Invalid archive format: ${archive.format ?? 'missing'}`);
+    }
+    // Count verification
+    if (archive.metadata) {
+        if (archive.metadata.chunkCount !== archive.chunks?.length) {
+            warnings.push(`Metadata chunkCount (${archive.metadata.chunkCount}) does not match actual (${archive.chunks?.length ?? 0})`);
+        }
+        if (archive.metadata.edgeCount !== archive.edges?.length) {
+            warnings.push(`Metadata edgeCount (${archive.metadata.edgeCount}) does not match actual (${archive.edges?.length ?? 0})`);
+        }
+        if (archive.metadata.clusterCount !== archive.clusters?.length) {
+            warnings.push(`Metadata clusterCount (${archive.metadata.clusterCount}) does not match actual (${archive.clusters?.length ?? 0})`);
+        }
+    }
+    // Edge referential integrity
+    if (archive.chunks && archive.edges) {
+        const chunkIdSet = new Set(archive.chunks.map((c) => c.id));
+        let danglingCount = 0;
+        for (const edge of archive.edges) {
+            if (!chunkIdSet.has(edge.source) || !chunkIdSet.has(edge.target)) {
+                danglingCount++;
+            }
+        }
+        if (danglingCount > 0) {
+            warnings.push(`${danglingCount} edge(s) reference chunks not in the archive`);
+        }
+    }
+    // v1.0 backward compat warning
+    if (archive.version === '1.0') {
+        warnings.push('Archive version 1.0: no vector embeddings included. Semantic search will not work until re-embedding.');
+    }
+    // Embedding dimension mismatch detection
+    if (archive.metadata?.embeddingDimensions && archive.vectors?.length > 0) {
+        const sampleDims = archive.vectors[0].embedding?.length;
+        if (sampleDims && sampleDims !== archive.metadata.embeddingDimensions) {
+            warnings.push(`Embedding dimensions mismatch: metadata says ${archive.metadata.embeddingDimensions}, sample vector has ${sampleDims}`);
+        }
+    }
+    return {
+        valid: errors.length === 0,
+        errors,
+        warnings,
+    };
+}
 /**
  * Export memory data to an archive.
  */
@@ -24,14 +87,16 @@ export async function exportArchive(options) {
     const targetProjects = options.projects ?? allProjects;
     // Export chunks
     const chunksQuery = db.prepare(`
-    SELECT id, session_slug, content, start_time, end_time, turn_indices
+    SELECT id, session_id, session_slug, project_path, content, start_time, end_time, turn_indices
     FROM chunks
     WHERE session_slug IN (${targetProjects.map(() => '?').join(',')})
   `);
     const chunksResult = chunksQuery.all(...targetProjects);
     let chunks = chunksResult.map((row) => ({
         id: row.id,
+        sessionId: row.session_id,
         sessionSlug: row.session_slug,
+        projectPath: row.project_path,
         content: row.content,
         startTime: row.start_time,
         endTime: row.end_time,
@@ -50,36 +115,91 @@ export async function exportArchive(options) {
             content: redactCodeBlocks(chunk.content),
         }));
     }
-    // Export edges
+    // Build chunk ID set for filtering edges and vectors
+    const chunkIdSet = new Set(chunks.map((c) => c.id));
+    // Export edges — both endpoints must be in the export
     const chunkIds = chunks.map((c) => c.id);
-    const edgesQuery = db.prepare(`
-    SELECT source_id, target_id, type, reference_type, weight
-    FROM edges
-    WHERE source_id IN (${chunkIds.map(() => '?').join(',')})
-  `);
-    const edgesResult = edgesQuery.all(...chunkIds);
-    const edges = edgesResult.map((row) => ({
-        source: row.source_id,
-        target: row.target_id,
-        type: row.type,
-        referenceType: row.reference_type,
-        weight: row.weight,
-    }));
-    // Export clusters
-    const clustersQuery = db.prepare(`
-    SELECT c.id, c.name, c.description, GROUP_CONCAT(cm.chunk_id) as member_ids
-    FROM clusters c
-    LEFT JOIN cluster_members cm ON c.id = cm.cluster_id
-    WHERE cm.chunk_id IN (${chunkIds.map(() => '?').join(',')})
-    GROUP BY c.id
-  `);
-    const clustersResult = clustersQuery.all(...chunkIds);
-    const clusters = clustersResult.map((row) => ({
-        id: row.id,
-        name: row.name,
-        description: row.description,
-        memberChunkIds: row.member_ids?.split(',') ?? [],
-    }));
+    let edges = [];
+    if (chunkIds.length > 0) {
+        const edgesQuery = db.prepare(`
+      SELECT id, source_chunk_id, target_chunk_id, edge_type, reference_type, initial_weight, link_count
+      FROM edges
+      WHERE source_chunk_id IN (${chunkIds.map(() => '?').join(',')})
+    `);
+        const edgesResult = edgesQuery.all(...chunkIds);
+        // Filter: only keep edges where BOTH endpoints are in the export
+        edges = edgesResult
+            .filter((row) => chunkIdSet.has(row.source_chunk_id) && chunkIdSet.has(row.target_chunk_id))
+            .map((row) => ({
+            id: row.id,
+            source: row.source_chunk_id,
+            target: row.target_chunk_id,
+            type: row.edge_type,
+            referenceType: row.reference_type,
+            weight: row.initial_weight,
+            linkCount: row.link_count,
+        }));
+    }
+    // Export clusters with full data
+    let clusters = [];
+    if (chunkIds.length > 0) {
+        // Find clusters that have at least one member in our export
+        const clusterIdsQuery = db.prepare(`
+      SELECT DISTINCT cluster_id FROM chunk_clusters
+      WHERE chunk_id IN (${chunkIds.map(() => '?').join(',')})
+    `);
+        const clusterIds = clusterIdsQuery.all(...chunkIds).map((r) => r.cluster_id);
+        if (clusterIds.length > 0) {
+            const clustersQuery = db.prepare(`
+        SELECT id, name, description, centroid, exemplar_ids, membership_hash
+        FROM clusters
+        WHERE id IN (${clusterIds.map(() => '?').join(',')})
+      `);
+            const clustersResult = clustersQuery.all(...clusterIds);
+            const membersQuery = db.prepare(`
+        SELECT chunk_id, distance FROM chunk_clusters
+        WHERE cluster_id = ? AND chunk_id IN (${chunkIds.map(() => '?').join(',')})
+      `);
+            clusters = clustersResult.map((row) => {
+                const membersResult = membersQuery.all(row.id, ...chunkIds);
+                return {
+                    id: row.id,
+                    name: row.name,
+                    description: row.description,
+                    centroid: row.centroid ? deserializeEmbedding(row.centroid) : null,
+                    exemplarIds: row.exemplar_ids ? JSON.parse(row.exemplar_ids) : null,
+                    membershipHash: row.membership_hash,
+                    members: membersResult.map((m) => ({
+                        chunkId: m.chunk_id,
+                        distance: m.distance,
+                    })),
+                };
+            });
+        }
+    }
+    // Export vectors
+    let vectors = [];
+    let embeddingDimensions = null;
+    if (!options.noVectors && chunkIds.length > 0) {
+        // Check if vectors table exists
+        const tableExists = db
+            .prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='vectors'")
+            .get();
+        if (tableExists) {
+            const vectorsQuery = db.prepare(`
+        SELECT id, embedding FROM vectors
+        WHERE id IN (${chunkIds.map(() => '?').join(',')})
+      `);
+            const vectorsResult = vectorsQuery.all(...chunkIds);
+            vectors = vectorsResult.map((row) => ({
+                chunkId: row.id,
+                embedding: deserializeEmbedding(row.embedding),
+            }));
+            if (vectors.length > 0) {
+                embeddingDimensions = vectors[0].embedding.length;
+            }
+        }
+    }
     // Build archive
     const archive = {
         format: 'causantic-archive',
@@ -91,31 +211,40 @@ export async function exportArchive(options) {
             chunkCount: chunks.length,
             edgeCount: edges.length,
             clusterCount: clusters.length,
+            vectorCount: vectors.length,
+            embeddingDimensions,
             projects: targetProjects,
         },
         chunks,
         edges,
         clusters,
+        vectors,
     };
-    // Serialize
-    const jsonData = JSON.stringify(archive, null, 2);
-    // Write output
+    // Serialize: JSON -> gzip -> (optional) encrypt -> write
+    const jsonData = JSON.stringify(archive);
+    const compressed = gzipSync(Buffer.from(jsonData, 'utf-8'));
+    let output;
+    const encrypted = !!options.password;
     if (options.password) {
-        // Encrypted
-        const encrypted = encrypt(Buffer.from(jsonData, 'utf-8'), options.password);
-        const serialized = serializeEncrypted(encrypted);
-        const output = Buffer.concat([ENCRYPTED_MAGIC, serialized]);
-        writeFileSync(options.outputPath, output);
+        const encryptedData = encrypt(compressed, options.password);
+        const serialized = serializeEncrypted(encryptedData);
+        output = Buffer.concat([ENCRYPTED_MAGIC, serialized]);
     }
     else {
-        // Unencrypted
-        writeFileSync(options.outputPath, jsonData);
+        output = compressed;
     }
-    log.info('Export completed', {
-        chunks: chunks.length,
-        edges: edges.length,
-        clusters: clusters.length,
-    });
+    writeFileSync(options.outputPath, output);
+    const result = {
+        chunkCount: chunks.length,
+        edgeCount: edges.length,
+        clusterCount: clusters.length,
+        vectorCount: vectors.length,
+        fileSize: output.length,
+        compressed: true,
+        encrypted,
+    };
+    log.info('Export completed', { ...result });
+    return result;
 }
 /**
  * Import memory data from an archive.
@@ -126,76 +255,133 @@ export async function importArchive(options) {
     }
     const fileContent = readFileSync(options.inputPath);
     let jsonData;
-    // Check if encrypted
-    if (fileContent.subarray(0, 4).equals(ENCRYPTED_MAGIC)) {
+    // Detection order:
+    // 1. CST\0 (encrypted) -> decrypt, then check for gzip
+    // 2. gzip magic 0x1f 0x8b (compressed, unencrypted)
+    // 3. plain JSON (v1.0 backward compat)
+    if (fileContent.length >= 4 && fileContent.subarray(0, 4).equals(ENCRYPTED_MAGIC)) {
         if (!options.password) {
             throw new Error('Archive is encrypted. Please provide a password.');
         }
         const encryptedData = deserializeEncrypted(fileContent.subarray(4));
         const decrypted = decrypt(encryptedData, options.password);
-        jsonData = decrypted.toString('utf-8');
+        // Check if decrypted data is gzipped
+        if (decrypted.length >= 2 && decrypted[0] === 0x1f && decrypted[1] === 0x8b) {
+            jsonData = gunzipSync(decrypted).toString('utf-8');
+        }
+        else {
+            jsonData = decrypted.toString('utf-8');
+        }
+    }
+    else if (fileContent.length >= 2 &&
+        fileContent[0] === GZIP_MAGIC[0] &&
+        fileContent[1] === GZIP_MAGIC[1]) {
+        jsonData = gunzipSync(fileContent).toString('utf-8');
     }
     else {
         jsonData = fileContent.toString('utf-8');
     }
     const archive = JSON.parse(jsonData);
-    if (archive.format !== 'causantic-archive') {
-        throw new Error('Invalid archive format');
+    // Validate
+    const validation = validateArchive(archive);
+    for (const warning of validation.warnings) {
+        log.warn(warning);
+    }
+    if (!validation.valid) {
+        throw new Error(`Invalid archive: ${validation.errors.join('; ')}`);
+    }
+    // Normalize v1.0 archives
+    if (!archive.vectors) {
+        archive.vectors = [];
+    }
+    const result = {
+        chunkCount: archive.chunks.length,
+        edgeCount: archive.edges.length,
+        clusterCount: archive.clusters.length,
+        vectorCount: archive.vectors.length,
+        dryRun: !!options.dryRun,
+    };
+    if (options.dryRun) {
+        log.info('Dry run — no changes made', { ...result });
+        return result;
     }
     const db = getDb();
+    // Ensure vectors table exists
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS vectors (
+      id TEXT PRIMARY KEY,
+      embedding BLOB NOT NULL,
+      orphaned_at TEXT DEFAULT NULL,
+      last_accessed TEXT DEFAULT CURRENT_TIMESTAMP
+    )
+  `);
     // Start transaction
     const transaction = db.transaction(() => {
         if (!options.merge) {
             // Clear existing data
-            db.prepare('DELETE FROM cluster_members').run();
+            db.prepare('DELETE FROM chunk_clusters').run();
             db.prepare('DELETE FROM clusters').run();
             db.prepare('DELETE FROM edges').run();
+            db.prepare('DELETE FROM vectors').run();
             db.prepare('DELETE FROM chunks').run();
         }
         // Import chunks
         const insertChunk = db.prepare(`
-      INSERT OR REPLACE INTO chunks (id, session_slug, content, start_time, end_time, turn_indices)
-      VALUES (?, ?, ?, ?, ?, ?)
+      INSERT OR REPLACE INTO chunks (id, session_id, session_slug, project_path, content, start_time, end_time, turn_indices)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?)
     `);
         for (const chunk of archive.chunks) {
-            insertChunk.run(chunk.id, chunk.sessionSlug, chunk.content, chunk.startTime, chunk.endTime, JSON.stringify(chunk.turnIndices));
+            insertChunk.run(chunk.id, chunk.sessionId ?? '', chunk.sessionSlug, chunk.projectPath ?? null, chunk.content, chunk.startTime, chunk.endTime, JSON.stringify(chunk.turnIndices));
         }
         // Import edges
         const insertEdge = db.prepare(`
-      INSERT OR REPLACE INTO edges (source_id, target_id, type, reference_type, weight)
-      VALUES (?, ?, ?, ?, ?)
+      INSERT OR REPLACE INTO edges (id, source_chunk_id, target_chunk_id, edge_type, reference_type, initial_weight, created_at, link_count)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?)
     `);
         for (const edge of archive.edges) {
-            insertEdge.run(edge.source, edge.target, edge.type, edge.referenceType, edge.weight);
+            insertEdge.run(edge.id ?? generateId(), edge.source, edge.target, edge.type, edge.referenceType ?? null, edge.weight, new Date().toISOString(), edge.linkCount ?? 1);
         }
         // Import clusters
         const insertCluster = db.prepare(`
-      INSERT OR REPLACE INTO clusters (id, name, description)
-      VALUES (?, ?, ?)
+      INSERT OR REPLACE INTO clusters (id, name, description, centroid, exemplar_ids, membership_hash)
+      VALUES (?, ?, ?, ?, ?, ?)
     `);
         const insertMember = db.prepare(`
-      INSERT OR REPLACE INTO cluster_members (cluster_id, chunk_id)
-      VALUES (?, ?)
+      INSERT OR REPLACE INTO chunk_clusters (chunk_id, cluster_id, distance)
+      VALUES (?, ?, ?)
     `);
         for (const cluster of archive.clusters) {
-            insertCluster.run(cluster.id, cluster.name, cluster.description);
-            for (const memberId of cluster.memberChunkIds) {
-                insertMember.run(cluster.id, memberId);
+            insertCluster.run(cluster.id, cluster.name, cluster.description, cluster.centroid ? serializeEmbedding(cluster.centroid) : null, cluster.exemplarIds ? JSON.stringify(cluster.exemplarIds) : null, cluster.membershipHash ?? null);
+            // Handle both v1.1 (members with distance) and v1.0 compat (memberChunkIds)
+            const members = cluster.members ??
+                cluster.memberChunkIds?.map((id) => ({
+                    chunkId: id,
+                    distance: 0,
+                })) ??
+                [];
+            for (const member of members) {
+                insertMember.run(member.chunkId, cluster.id, member.distance);
+            }
+        }
+        // Import vectors
+        if (archive.vectors.length > 0) {
+            const insertVector = db.prepare(`
+        INSERT OR REPLACE INTO vectors (id, embedding, orphaned_at, last_accessed)
+        VALUES (?, ?, NULL, CURRENT_TIMESTAMP)
+      `);
+            for (const vector of archive.vectors) {
+                insertVector.run(vector.chunkId, serializeEmbedding(vector.embedding));
             }
         }
     });
     transaction();
-    log.info('Import completed', {
-        chunks: archive.chunks.length,
-        edges: archive.edges.length,
-        clusters: archive.clusters.length,
-    });
+    log.info('Import completed', { ...result });
+    return result;
 }
 /**
  * Redact file paths in content.
  */
 function redactFilePaths(content) {
-    // Match common file path patterns
     const pathPattern = /(?:\/[\w.-]+)+\.\w+|(?:[A-Z]:\\[\w.-\\]+)|(?:~\/[\w.-\/]+)/g;
     return content.replace(pathPattern, '[REDACTED_PATH]');
 }
@@ -203,7 +389,6 @@ function redactFilePaths(content) {
  * Redact code blocks in content.
  */
 function redactCodeBlocks(content) {
-    // Match markdown code blocks
     const codeBlockPattern = /```[\s\S]*?```/g;
     return content.replace(codeBlockPattern, '```\n[REDACTED_CODE]\n```');
 }

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "causantic",
-  "version": "0.5.1",
+  "version": "0.5.3",
   "description": "Long-term memory for Claude Code — local-first, graph-augmented, self-benchmarking",
   "type": "module",
   "private": false,
@@ -48,7 +48,6 @@
     "src/dashboard/client/package-lock.json"
   ],
   "scripts": {
-    "prepublishOnly": "npm run build && npm test",
     "build": "tsc && cp src/storage/schema.sql dist/storage/ && cd src/dashboard/client && npm install --ignore-scripts && npm run build",
     "build:server": "tsc && cp src/storage/schema.sql dist/storage/",
     "build:client": "cd src/dashboard/client && npm install --ignore-scripts && npm run build",
@@ -56,8 +55,8 @@
     "test:watch": "vitest",
     "lint": "eslint src/ test/",
     "lint:fix": "eslint src/ test/ --fix",
-    "format": "prettier --write 'src/**/*.ts' 'test/**/*.ts'",
-    "format:check": "prettier --check 'src/**/*.ts' 'test/**/*.ts'",
+    "format": "prettier --write 'src/**/*.{ts,tsx,css}' 'test/**/*.ts' 'scripts/**/*.ts' config.schema.json docker-compose.yml",
+    "format:check": "prettier --check 'src/**/*.{ts,tsx,css}' 'test/**/*.ts' 'scripts/**/*.ts' config.schema.json docker-compose.yml",
     "ingest": "tsx scripts/ops/ingest.ts",
     "batch-ingest": "tsx scripts/ops/batch-ingest.ts",
     "recall": "tsx scripts/ops/recall.ts",
@@ -97,8 +96,8 @@
   "devDependencies": {
     "@types/express": "^5.0.6",
     "@types/node": "^25.2.3",
-    "@typescript-eslint/eslint-plugin": "^8.55.0",
-    "@typescript-eslint/parser": "^8.55.0",
+    "@typescript-eslint/eslint-plugin": "^8.56.0",
+    "@typescript-eslint/parser": "^8.56.0",
     "@vitest/coverage-v8": "^4.0.18",
     "eslint": "^9.39.2",
     "eslint-config-prettier": "^10.1.8",