carta-frontend 3.0.0 → 4.0.0-beta.1

package/.github/pull_request_template.md

@@ -1,7 +1,17 @@
 **Description**
+
 linked issues and companion PRs (if there are), what is implemented or fixed, how to test it, …
 
 **Checklist**
+
+For linked issues (if there are):
+- [ ] assignee and label added
+- [ ] ZenHub issue connection, board status, and estimate updated
+
+For the pull request:
+- [ ] reviewers and assignee added
+- [ ] ZenHub estimate, milestone, and release (if needed) added
+- [ ] e2e test passing / corresponding fix added
 - [ ] changelog updated / no changelog update needed
-- [ ] e2e test passing / added corresponding fix
-- [ ] protobuf updated to the latest dev commit / no protobuf update needed
+- [ ] protobuf updated to the latest dev commit / no protobuf update needed
+- [ ] `BackendService` unchanged / `BackendService` changed and corresponding ICD test fix added

package/.github/workflows/continuous_integration.yml

@@ -1,14 +1,122 @@
 name: CI
-on: push
+on: [push, pull_request]
 jobs:
-  check-formatting:
+
+  format-check:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
       - uses: actions/setup-node@v3
         with:
-          node-version: '14'
-          # Disabling temporarily due to https://github.com/actions/setup-node/issues/516
-          # cache: 'npm'
-      - run: npm install
+          node-version: '16'
+          cache: 'npm'
+      - run: npm install --legacy-peer-deps
       - run: npm run checkformat
+
+  node-v16:
+    runs-on: [self-hosted, Linux, X64, Docker]
+    needs: format-check
+    container: 
+      image: carta/frontend-builder
+      options: --security-opt seccomp=unconfined
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+
+      - name: Fix ownership
+        run: |
+          chown -R $(id -u):$(id -g) $PWD
+
+      - name: Build libs
+        shell: bash        
+        run: |
+          source /emsdk/emsdk_env.sh
+          ./wasm_libs/build_libs.sh
+
+      - name: npm install with node 16
+        shell: bash        
+        run: |
+          n 16
+          n exec 16 node -v
+          n exec 16 npm install --legacy-peer-deps
+
+      - name: Build wrappers
+        shell: bash        
+        run: |
+          source /emsdk/emsdk_env.sh
+          ./wasm_src/build_wrappers.sh
+
+      - name: Build protobuf
+        shell: bash        
+        run: |
+          source /emsdk/emsdk_env.sh
+          ./protobuf/build_proto.sh
+
+      - name: Production build with node 16
+        shell: bash        
+        run: |
+          source /emsdk/emsdk_env.sh
+          n exec 16 npm run build
+
+  node-v18:
+    runs-on: [self-hosted, Linux, X64, Docker]
+    needs: format-check
+    container:
+      image: carta/frontend-builder
+      options: --security-opt seccomp=unconfined
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+
+      - name: Fix ownership
+        run: |
+          chown -R $(id -u):$(id -g) $PWD
+
+      - name: Build libs
+        shell: bash
+        run: |
+          source /emsdk/emsdk_env.sh
+          ./wasm_libs/build_libs.sh
+
+      - name: npm install with node 18
+        shell: bash
+        run: |
+          n 18
+          n exec 18 node -v
+          n exec 18 npm install --legacy-peer-deps
+
+      - name: Build wrappers
+        shell: bash
+        run: |
+          source /emsdk/emsdk_env.sh
+          ./wasm_src/build_wrappers.sh
+
+      - name: Build protobuf
+        shell: bash
+        run: |
+          source /emsdk/emsdk_env.sh
+          ./protobuf/build_proto.sh
+
+      - name: Production build with node 18
+        shell: bash
+        run: |
+          source /emsdk/emsdk_env.sh
+          n exec 18 npm run build
+
+  Notify:
+    name: Send notifications
+    runs-on: ubuntu-latest
+    needs: [format-check, node-v16, node-v18]
+    if: always()
+    steps:
+      - name: Notify Slack
+        uses: baijunyao/action-slack-notify@v3.1.0
+        if: ${{ github.event_name == 'push' }}
+        with:
+          slack_channel_id: actions-build-status
+          slack_bot_token: ${{ secrets.SLACK_BOT_TOKEN }}
+          github_context: ${{ toJson(github) }}

package/CHANGELOG.md

@@ -4,6 +4,60 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [4.0.0-beta.1]
+
+### Added
+* Added two entries in Service sub-menu to copy the session ID and the session URL to clipboard ([#1930](https://github.com/cartavis/carta-frontend/issues/1930)).
+* Added a button for NaN pixel color selection in render config widget ([#1946](https://github.com/cartavis/carta-frontend/issues/1946)).
+* Added a setting dialog for the angular distance measurement ([#1201](https://github.com/cartavis/carta-frontend/issues/1201)).
+* Added the functionality to show/hide and lock all regions ([#1796](https://github.com/cartavis/carta-frontend/issues/1796)).
+* Added a method to auto-scrolling the selected region into the region list view ([#1797](https://github.com/CARTAvis/carta-frontend/issues/1797)).
+* Added the functionality to mirror cursor position on spatially matched frame via hotkey "G" ([#1947](https://github.com/cartavis/carta-frontend/issues/1947)).
+* Added support for fitting images with regions, fixed parameters, a background offset, and different solvers; added support for setting initial values in world coordinates; added support for generating model and residual images, exporting fitting result and full log, and creating regions from the results; added support for estimating progress and cancelling tasks ([#1397](https://github.com/CARTAvis/carta-frontend/issues/1397)).
+* Added tooltip to the Image column for the image list and cursor info widget ([#1948](https://github.com/CARTAvis/carta-frontend/issues/1948)).
+* Added additional cursor info option to spectral profile widget ([#1837](https://github.com/CARTAvis/carta-frontend/issues/1837)).
+* Added a selection option in the PV generator widget to swap x and y axis, an input for spectral axis limit, and a toggle button to let users decide whether or not to keep the previously generated PV images ([#1950](https://github.com/cartavis/carta-frontend/issues/1950), [#1951](https://github.com/cartavis/carta-frontend/issues/1951), [#1952](https://github.com/cartavis/carta-frontend/issues/1952)).
+* Added a toggle button to let users decide whether or not to keep the previously generated moment images ([#2054](https://github.com/CARTAvis/carta-frontend/issues/2054)).
+* Added settings in the image view settings widget for panning and zooming the images ([#1176](https://github.com/CARTAvis/carta-frontend/issues/1176)).
+* Added layout renaming dialog ([#458](https://github.com/CARTAvis/carta-frontend/issues/458)).
+* Added supports for swapped-axes image cubes ([#1953](https://github.com/CARTAvis/carta-frontend/issues/1953)).
+* Added supports for image annotations ([#267](https://github.com/CARTAvis/carta-frontend/issues/267)).
+* Added the ability of changing to a new directory by entering a path ([#609](https://github.com/CARTAvis/carta-frontend/issues/609)).
+* Added supports for customizing histogram calculations ([#1488](https://github.com/CARTAvis/carta-frontend/issues/1488)).
+* Added pv image preview feature ([#1561](https://github.com/CARTAvis/carta-frontend/issues/1561)).
+* Added support for saving and restoring workspaces ([#1272](https://github.com/CARTAvis/carta-frontend/issues/1272)). Initial support is limited to restoring open images, render/contour/overlay configs and regions.
+### Fixed
+* Fixed the issue of annoying text input fields ([#1906](https://github.com/CARTAvis/carta-frontend/issues/1906)).
+* Fixed the issues of copying the Session URL in the macOS Electron and Linux AppImage versions ([#2102](https://github.com/CARTAvis/carta-frontend/issues/2102), [#2108](https://github.com/CARTAvis/carta-frontend/issues/2108)).
+* Fixed the issue of contour levels not deleted as intended ([#2091](https://github.com/CARTAvis/carta-frontend/issues/2091)).
+* Fixed issue of only enabling catalog selection button when there is a layer of catalog overlay ([#1826](https://github.com/CARTAvis/carta-frontend/issues/1826)).
+* Fixed the issue of the corrupted spatial profile when cursor is moving ([#1602](https://github.com/CARTAvis/carta-frontend/issues/1602)).
+* Fixed NaN pixel value in the cursor info bar of the image viewer when the image is 1x1 pixel ([#1879](https://github.com/CARTAvis/carta-frontend/issues/1879)).
+* Fixed issue to show cursor info of smoothed profiles in the spatial and spectral profilers ([#1880](https://github.com/CARTAvis/carta-frontend/issues/1880), [#1938](https://github.com/CARTAvis/carta-frontend/pull/1938)).
+* Fixed mean and RMS not updating when smoothing in the spatial and spectral profilers ([#1838](https://github.com/CARTAvis/carta-frontend/issues/1838)).
+* Fixed limitations of the point size for catalog overlay rendering ([#1662](https://github.com/CARTAvis/carta-frontend/issues/1662) and [#1802](https://github.com/CARTAvis/carta-frontend/issues/1802)).
+* Fixed the issue of updating image view mode when catalog selection button is disabled ([#1967](https://github.com/CARTAvis/carta-frontend/issues/1967)).
+* Fixed the issue of stuck image viewer after changing single/multi panel mode after catalog selection ([#1989](https://github.com/CARTAvis/carta-frontend/issues/1989)).
+* Fixed empty tsv file export for xy profiler ([#2021](https://github.com/CARTAvis/carta-frontend/issues/2021)).
+* Fixed missing catalog overlay for single source catalog files ([#2034](https://github.com/CARTAvis/carta-frontend/issues/2034)).
+* Fixed the region position offset mismatch problem after zooming to fit for spatially matched images. ([#2028](https://github.com/CARTAvis/carta-frontend/issues/2028)).
+* Improved the performance of loading regions in batches ([#2040](https://github.com/CARTAvis/carta-frontend/issues/2040)).
+* Fixed offset between cusorInfo and upper wcs axis in the spatial profilers ([#1319](https://github.com/CARTAvis/carta-frontend/issues/1319)).
+* Fixed mismatch between cursor and image during PV image panning ([#1790](https://github.com/CARTAvis/carta-frontend/issues/1790)).
+* Fixed the hanging problem for computed stokes animation ([#1238](https://github.com/CARTAvis/carta-backend/issues/1238)).
+* Fixed the AST grid rendering issues in different reference systems due to missing explicit equinox in the setup ([#2106](https://github.com/CARTAvis/carta-frontend/issues/2106)).
+* Fixed crash when sending spectral line queries without network connection ([#2119](https://github.com/CARTAvis/carta-frontend/issues/2119)).
+### Changed
+* Re-arranged the order of File menu ([#2092](https://github.com/CARTAvis/carta-frontend/issues/2092)).
+* Increased the upper limit of averaging width for line/polyline spatial profiles or PV images calculations ([#1949](https://github.com/CARTAvis/carta-frontend/issues/1949)).
+* Set white color or black color, based on the theme, as the background for the image view PNG export ([#2029](https://github.com/CARTAvis/carta-frontend/issues/2029)).
+* Spectral line queries are migrated to Splatalogue advanced backend queries due to the upcoming deprecation of the current Splatalogue frontend queries ([#2114](https://github.com/CARTAvis/carta-frontend/issues/2114)).
+
+## [3.0.1]
+
+### Fixed
+* Fixed issue with dashboard address ([#1991](https://github.com/CARTAvis/carta-frontend/issues/1991)).
+
 ## [3.0.0]
 
 ### Added

package/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = source
+BUILDDIR      = build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

package/build/asset-manifest.json

@@ -1,108 +1,105 @@
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   "files": {
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-    "index.html": "./index.html",
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   },
   "entrypoints": [
-    "static/js/runtime-main.f817eaa9.js",
-    "static/css/2.de548345.chunk.css",
-    "static/js/2.a2e60648.chunk.js",
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+    "static/css/main.29c74ed7.css",
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   ]
 }

package/build/index.html

@@ -1,6 +1,6 @@
-<!doctype html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1,shrink-to-fit=no"><meta name="theme-color" content="#000000"><link rel="manifest" href="./manifest.json"><link rel="shortcut icon" href="./carta_icon_128px.png"><title>CARTA</title><style>.static-text{font-size:14px;font-weight:400;letter-spacing:0;line-height:1.28581;text-transform:none;color:#182026;font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,Oxygen,Ubuntu,Cantarell,"Open Sans","Helvetica Neue",Icons16,sans-serif}.static-pre{color:#182026;font-size:14px;white-space:pre-line}.static-overlay{position:absolute;top:0;bottom:0;left:0;right:0;margin:auto;height:400px;width:650px}.loading-div{width:650px;height:400px;background:#f5f8fa;text-align:center;padding:15px;box-shadow:0 0 0 1px rgba(16,22,26,.1),0 4px 8px rgba(16,22,26,.1),0 18px 46px 6px rgba(16,22,26,.1);border-radius:6px;border:2px solid #5480b7;box-sizing:border-box}.static-spinner{align-items:center;display:flex;justify-content:center;vertical-align:middle;margin:20px}.static-spinner-animation{width:30px;height:30px;animation:static-spinner-animation .5s linear infinite}@keyframes static-spinner-animation{from{-webkit-transform:rotate(0);transform:rotate(0)}to{-webkit-transform:rotate(360deg);transform:rotate(360deg)}}.static-spinner-track{fill-opacity:0;stroke:rgba(92,112,128,.2);stroke-width:8px}.static-spinner-head{fill-opacity:0;stroke:rgba(43,149,214,.8);stroke-width:13px}.loading-text{animation:cssAnimation 5s forwards;opacity:0}@keyframes cssAnimation{0%{opacity:0}90%{opacity:0}100%{opacity:1}}</style><link href="./static/css/2.de548345.chunk.css" rel="stylesheet"><link href="./static/css/main.7ed6d008.chunk.css" rel="stylesheet"></head><body><noscript>You need to enable JavaScript to run this app.</noscript><div id="root"><div class="static-overlay"><div class="loading-div"><img src="carta_logo.png" width="150" height="175" alt="CARTA"><div class="static-spinner"><div class="static-spinner-animation"><svg width="30" height="30" viewBox="-1.67 -1.67 103.33 103.33"><path class="static-spinner-track" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90"/><path class="static-spinner-head" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90" pathLength="280" stroke-dasharray="280 280" stroke-dashoffset="210"/></svg></div></div><div class="loading-text"><p class="static-text">Loading CARTA. If this message does not disappear, please <a href="https://refreshyourcache.com/en/cache/">hard-reload</a> this site in your browser using the shortcut below:</p><pre class="static-pre">
+<!doctype html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1,shrink-to-fit=no"><meta name="theme-color" content="#000000"><link rel="manifest" href="./manifest.json"><link rel="shortcut icon" href="./carta_icon_128px.png"><title>CARTA</title><style>.static-text{font-size:14px;font-weight:400;letter-spacing:0;line-height:1.28581;text-transform:none;color:#182026;font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,Oxygen,Ubuntu,Cantarell,"Open Sans","Helvetica Neue",Icons16,sans-serif}.static-pre{color:#182026;font-size:14px;white-space:pre-line}.static-overlay{position:absolute;top:0;bottom:0;left:0;right:0;margin:auto;height:400px;width:650px}.loading-div{width:650px;height:400px;background:#f5f8fa;text-align:center;padding:15px;box-shadow:0 0 0 1px rgba(16,22,26,.1),0 4px 8px rgba(16,22,26,.1),0 18px 46px 6px rgba(16,22,26,.1);border-radius:6px;border:2px solid #5480b7;box-sizing:border-box}.static-spinner{align-items:center;display:flex;justify-content:center;vertical-align:middle;margin:20px}.static-spinner-animation{width:30px;height:30px;animation:static-spinner-animation .5s linear infinite}@keyframes static-spinner-animation{from{-webkit-transform:rotate(0);transform:rotate(0)}to{-webkit-transform:rotate(360deg);transform:rotate(360deg)}}.static-spinner-track{fill-opacity:0;stroke:rgba(92,112,128,.2);stroke-width:8px}.static-spinner-head{fill-opacity:0;stroke:rgba(43,149,214,.8);stroke-width:13px}.loading-text{animation:cssAnimation 5s forwards;opacity:0}@keyframes cssAnimation{0%{opacity:0}90%{opacity:0}100%{opacity:1}}</style><script defer="defer" src="./static/js/main.c50b4489.js"></script><link href="./static/css/main.29c74ed7.css" rel="stylesheet"></head><body><noscript>You need to enable JavaScript to run this app.</noscript><div id="root"><div class="static-overlay"><div class="loading-div"><img src="carta_logo.png" width="150" height="175" alt="CARTA"><div class="static-spinner"><div class="static-spinner-animation"><svg width="30" height="30" viewBox="-1.67 -1.67 103.33 103.33"><path class="static-spinner-track" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90"/><path class="static-spinner-head" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90" pathLength="280" stroke-dasharray="280 280" stroke-dashoffset="210"/></svg></div></div><div class="loading-text"><p class="static-text">Loading CARTA. If this message does not disappear, please <a href="https://refreshyourcache.com/en/cache/">hard-reload</a> this site in your browser using the shortcut below:</p><pre class="static-pre">
                 macOS : option + command + R (Safari)
                 macOS : shift + command + R (Chrome, Firefox)
                 Linux : shift + control + R
                 Windows : control + F5
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