carta-frontend 3.0.0-dev.20220222 → 3.0.1

package/.github/ISSUE_TEMPLATE/bug_report.md

@@ -24,9 +24,11 @@ A clear and concise description of what you expected to happen.
 If applicable, add screenshots/videos to help explain your problem.
 
 **Platform info (please complete the following information):**
- - OS: [e.g. iOS]
- - Browser [e.g. chrome, safari]
- - Version [e.g. 22]
+ - OS [e.g. macOS Monterey]: 
+ - Browser [e.g. chrome, safari, electron app]: 
+ - Browser version [e.g. 22]: 
+ - Backend branch [e.g. dev, v3b2 release]:
+ - Frontend branch [e.g. dev, v3b2 release]:
 
 **Additional context**
 Add any other context about the problem here.

package/.github/pull_request_template.md

@@ -0,0 +1,7 @@
+**Description**
+linked issues and companion PRs (if there are), what is implemented or fixed, how to test it, …
+
+**Checklist**
+- [ ] changelog updated / no changelog update needed
+- [ ] e2e test passing / added corresponding fix
+- [ ] protobuf updated to the latest dev commit / no protobuf update needed

package/.github/workflows/continuous_integration.yml

@@ -0,0 +1,14 @@
+name: CI
+on: push
+jobs:
+  check-formatting:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-node@v3
+        with:
+          node-version: '14'
+          # Disabling temporarily due to https://github.com/actions/setup-node/issues/516
+          # cache: 'npm'
+      - run: npm install
+      - run: npm run checkformat

package/.prettierrc.json

@@ -4,7 +4,7 @@
     "embeddedLanguageFormatting": "auto",
     "htmlWhitespaceSensitivity": "css",
     "insertPragma": false,
-    "jsxBracketSameLine": false,
+    "bracketSameLine": false,
     "jsxSingleQuote": false,
     "proseWrap": "preserve",
     "quoteProps": "as-needed",

package/CHANGELOG.md

@@ -4,6 +4,73 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [3.0.1]
+
+### Fixed
+* Fixed issue with dashboard address ([#1991](https://github.com/CARTAvis/carta-frontend/issues/1991)).
+
+## [3.0.0]
+
+### Added
+* Added support for image fitting with field of view ([#1397](https://github.com/CARTAvis/carta-frontend/issues/1397)).
+* Size conversion in the image fitting results ([#1397](https://github.com/CARTAvis/carta-frontend/issues/1397)).
+* Show a notification when there is a new CARTA release ([#1852](https://github.com/CARTAvis/carta-frontend/issues/1852)).
+* Added links to the CARTA Dashboard to the splashscreen and alert dialog where appropriate ([#1874](https://github.com/CARTAvis/carta-frontend/issues/1874)).
+### Changed
+* Splatalogue queries are now made directly with the server, rather than proxied through the backend ([#1755](https://github.com/CARTAvis/carta-frontend/issues/1755)).
+### Fixed
+* Added missing vector overlay and image fitting options in the View menu ([#1848](https://github.com/CARTAvis/carta-frontend/issues/1848)).
+* Hide code snippet option in the View menu when code snippet is disabled in the preferences ([#1856](https://github.com/CARTAvis/carta-frontend/issues/1856)).
+* Fixed the rotation anchor offset of line regions ([#1739](https://github.com/CARTAvis/carta-frontend/issues/1739)).
+* Fixed issue with exporting decimated data instead of full resolution data in spatial profiler ([#1546](https://github.com/CARTAvis/carta-frontend/issues/1546)).
+* Fixed larger position errors of projected contours, catalog overlays, and vector overlays near the border ([#1843](https://github.com/CARTAvis/carta-frontend/issues/1843)).
+* Fixed no updating of spatial profile after region deleting ([#1831](https://github.com/CARTAvis/carta-frontend/issues/1831), [#1855](https://github.com/CARTAvis/carta-frontend/issues/1855)).
+* Fixed unable to switch channel by clicking scatter plot in stokes analysis widgets ([#1313](https://github.com/CARTAvis/carta-frontend/issues/1313)).
+* Fixed issues of crowded Frame idices in the animator and misalignment of channel slider indices ([#940](https://github.com/CARTAvis/carta-frontend/issues/940), [#1892](https://github.com/CARTAvis/carta-frontend/issues/1892)).
+* Fixed gaps in projected unclosed regions ([#1740](https://github.com/CARTAvis/carta-frontend/issues/1740)).
+* Fixed projection of polygon regions created on spatially matched images ([#1887](https://github.com/CARTAvis/carta-frontend/issues/1887)).
+* Fixed incorrect channels of matched images requested for animation ([#569](https://github.com/CARTAvis/carta-frontend/issues/569)).
+* Fixed issue of showing last index of animator sliders ([#1893] (https://github.com/CARTAvis/carta-frontend/issues/1893)).
+* Fixed tooltip blocking issue of the toolbar in the image viewer ([#1897](https://github.com/CARTAvis/carta-frontend/issues/1897)).
+* Fixed persisent tooltip after exporting a png image ([#1742](https://github.com/CARTAvis/carta-frontend/issues/1742)).
+* Fixed high CPU/GPU usage when CARTA is idle or attempting to reconnect to server ([#153](https://github.com/CARTAvis/carta/issues/153) and [#1808](https://github.com/CARTAvis/carta-frontend/issues/1808)).
+* Fixed incorrect region positions when importing regions on a spatially matched image ([#1899](https://github.com/CARTAvis/carta-frontend/issues/1899)).
+* Fixed issue in the spatial profile setting where the "Show WCS Axis" should be disabled for steps and lines plot styles ([#1905](https://github.com/CARTAvis/carta-frontend/issues/1905)).
+* Fixed issue when the active frame changes while the region is being imported.
+* Fixed the imprecised catalog plot axis. ([#1884](https://github.com/cartavis/carta-frontend/issues/1884)).
+* Fixed the displayed values in the cursor info of the histogram widget by adopting binary-searched data x and y values ([#1917](https://github.com/CARTAvis/carta-frontend/issues/1917)).
+* Fixed missing regions when the image is matched or unmatched to the reference ([#1780](https://github.com/CARTAvis/carta-frontend/issues/1780)).
+* Fixed inconsistent vector line width on spatially matched images ([#1854](https://github.com/CARTAvis/carta-frontend/issues/1854)).
+* Fixed QU profile rendering black at the first channel in the stokes widget ([#1786](https://github.com/CARTAvis/carta-frontend/issues/1786)).
+
+## [3.0.0-beta.3]
+
+### Added
+* Added cursor information to the histogram widget ([#1762](https://github.com/CARTAvis/carta-frontend/issues/1762)).
+* The ability to load files with LEL (lattice expression language) expressions ([#1264](https://github.com/CARTAvis/carta-frontend/issues/1264)).
+* The ability to set a custom rest frequency for saving subimages ([#1653](https://github.com/CARTAvis/carta-frontend/issues/1653)).
+* The ability to load complex images with a dropdown menu in the file browser dialog ([#1492](https://github.com/CARTAvis/carta-frontend/issues/1492)).
+* Added image fitting widget for multiple 2D Gaussian component fitting ([#1397](https://github.com/CARTAvis/carta-frontend/issues/1397)).
+* Added computed polarizations (Polarized intensity, Polarized angle ...) in polarization selectors ([#714](https://github.com/CARTAvis/carta-frontend/issues/714)).
+* Vector field rendering is supported in the image view widget. Data configuration and stlying can be set in the vector overlay dialog ([#1155](https://github.com/CARTAvis/carta-frontend/issues/1155)).
+### Changed
+* Optimization to the region list widget with a large number of regions ([#1252](https://github.com/CARTAvis/carta-frontend/issues/1252)).
+* Optimization to loading images with a million channels ([#1774](https://github.com/CARTAvis/carta-frontend/issues/1774)).
+* Limited the filename length of downloaded png files to around 200 characters ([#1501](https://github.com/CARTAvis/carta-frontend/issues/1501)).
+* Enabled text selection for region info and catalog info when loading/saving regions and loading catalogs ([#1795](https://github.com/CARTAvis/carta-frontend/issues/1795)).
+### Fixed
+* Corrected hard reload shortcut suggestions for macOS ([#1623](https://github.com/CARTAvis/carta-frontend/issues/1623)).
+* Fixed region re-rendering with click to pan method ([#1751](https://github.com/CARTAvis/carta-frontend/issues/1751)).
+* Fixed the initial spectral range of the moment generator ([#1749](https://github.com/CARTAvis/carta-frontend/issues/1749)).
+* Fixed crash when loading file with fewer axes than CDELT entries ([#1769](https://github.com/CARTAvis/carta-frontend/issues/1769)).
+* Fixed crash with empty line plots ([#1772](https://github.com/CARTAvis/carta-frontend/issues/1772)).
+* Fixed issue with PV image rendering ([#1708](https://github.com/CARTAvis/carta-frontend/issues/1708)).
+* Tab title of image viewer is reset when all images are closed ([#1686](https://github.com/CARTAvis/carta-frontend/issues/1686)).
+* Fixed issue with multiple-panel switch of the image viewer ([#1676](https://github.com/CARTAvis/carta-frontend/issues/1676)).
+* Fixed issue with the reset button in the spectral line query widget ([#1741](https://github.com/CARTAvis/carta-frontend/issues/1741)).
+* Fixed issue with catalog SIMBAD query after cancelling ([#1750](https://github.com/CARTAvis/carta-frontend/issues/1750)).
+* Fixed extra catalog overlay sources at the origin ([#1823](https://github.com/CARTAvis/carta-frontend/issues/1823)).
+
 ## [3.0.0-beta.2]
 
 ### Added
@@ -12,9 +79,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * Added two spectral matching types "Vacuum wavelength" and "Air wavelength."
 * Circular/linear polarizations are supported in polarization dropdowns for saving subimages and generating hypercubes.
 * The ability to export high resolution png images for publication quality in journals.
-* The ability to use a custom rest freqency for spectral matching, spectral axis display, and PV image x/y axis display.
+* The ability to use a custom rest frequency for spectral matching, spectral axis display, and PV image x/y axis display.
 * Added new feature: ability to generate a position-velocity (PV) image from a line region on images with a supported coordinate system. The generated images are loaded as separate images, similar to generated moment maps.
-
 ### Changed
 * Applied a new approach to calculate the sizes and lengths of a region ([#1572](https://github.com/CARTAvis/carta-frontend/issues/1572)).
 ### Fixed
@@ -47,7 +113,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * The image overlay title can now be customised on a per-image basis.
 * The polarization string (e.g. "Stokes I") is shown instead of the index (e.g. 0).
 * The spectral line query widget now checks the Splatalogue server before displaying.
-* Optimisations to catalog rendering with a large number of data points.
+* Optimizations to catalog rendering with a large number of data points.
 * Directories displayed in the file browser now have item count and modified date entries. 
 ### Fixed
 * Fixed issue with spectral-matched images not being refreshed [(#1571)](https://github.com/CARTAvis/carta-frontend/issues/1571).

package/Jenkinsfile

@@ -1,82 +1,85 @@
 pipeline {
     agent none
+    options {
+        disableConcurrentBuilds()
+    }
+    environment {
+        COMMIT_ID=''
+    }
     stages {
-        stage('Format check') {
-            agent {
-                label "ubuntu-2004"
-            }
-            steps {
-                catchError(buildResult: 'SUCCESS', stageResult: 'FAILURE') {
-                    sh "git submodule update --init --recursive"
-                    sh "n 12"
-                    sh "n 14"
-                    sh "n 16"
-                    sh "n exec 14 npm install"
-                    sh "n exec 14 npm run checkformat"
-                }
-            }
-        }
         stage('WebAssembly compilation') {
             agent {
-                label "ubuntu-2004"
+                label "ubuntu2004-agent"
             }
             steps {
-                catchError(buildResult: 'SUCCESS', stageResult: 'FAILURE') {
-                    sh "git submodule update --init --recursive"
-                    sh "n exec 14 npm run build-libs-docker"
-                    stash includes: "protobuf/**/*", name: "protobuf" 
-                    stash includes: "wasm_libs/built/**/*,wasm_libs/zstd/build/standalone_zstd.bc", name: "wasm_libs"
+                script {
+                    COMMIT_ID = sh(returnStdout: true, script: 'git rev-parse --short HEAD').trim()
                 }
+                sh "git submodule update --init --recursive"
+                sh "n exec 14 npm run build-libs-docker"
+                stash includes: "protobuf/**/*", name: "protobuf" 
+                stash includes: "wasm_libs/built/**/*,wasm_libs/zstd/build/standalone_zstd.bc", name: "wasm_libs"
             }
         }
         stage('Build') {
             parallel {
                 stage('Build with node v12') {
                     agent {
-                        label "ubuntu-2004"
+                        label "ubuntu2004-agent"
                     }
                     steps {
-                        catchError(buildResult: 'SUCCESS', stageResult: 'FAILURE') {
-                            unstash "protobuf"
-                            unstash "wasm_libs"
-                            sh 'rm -rf node_modules build'
-                            sh 'n exec 12 node -v'
-                            sh 'n exec 12 npm install'
-                            sh 'n exec 12 npm run build-docker'
-                        }
+                        unstash "protobuf"
+                        unstash "wasm_libs"
+                        sh "uname -a"
+                        sh "lsb_release -a"
+                        sh 'rm -rf node_modules build'
+                        sh 'n 12'
+                        sh 'n exec 12 node -v'
+                        sh 'n exec 12 npm install'
+                        sh 'n exec 12 npm run build-docker'
                     }
                 }
                 stage('Build with node v14') {
                     agent {
-                        label "ubuntu-2004"
+                        label "almalinux85-agent"
                     }
                     steps {
-                        catchError(buildResult: 'SUCCESS', stageResult: 'FAILURE') {
-                            unstash "protobuf"
-                            unstash "wasm_libs"
-                            sh 'rm -rf node_modules build'
-                            sh 'n exec 14 node -v'
-                            sh 'n exec 14 npm install'
-                            sh 'n exec 14 npm run build-docker'
-                        }
+                        unstash "protobuf"
+                        unstash "wasm_libs"
+                        sh "uname -a"
+                        sh "lsb_release -a"
+                        sh 'rm -rf node_modules build'
+                        sh 'n 14' 
+                        sh 'n exec 14 node -v'
+                        sh 'n exec 14 npm install'
+                        sh 'n exec 14 npm run build-docker'
                     }
                 }
                 stage('Build with node v16') {
                     agent {
-                       label "ubuntu-2004"
+                       label "almalinux86-agent"
                     }
                     steps {
-                        catchError(buildResult: 'SUCCESS', stageResult: 'FAILURE') {
-                            unstash "protobuf"
-                            unstash "wasm_libs"
-                            sh 'rm -rf node_modules build'
-                            sh 'n exec 16 node -v'
-                            sh 'n exec 16 npm install'
-                            sh 'n exec 16 npm run build-docker'
-                        }
+                        unstash "protobuf"
+                        unstash "wasm_libs"
+                        sh "uname -a"
+                        sh "lsb_release -a"
+                        sh 'rm -rf node_modules build'
+                        sh 'n 16'
+                        sh 'n exec 16 node -v'
+                        sh 'n exec 16 npm install --legacy-peer-deps'
+                        sh 'n exec 16 npm run build-docker'
                     }
                 }
             }
         }
     }
+    post {
+        success {
+            slackSend color: 'good', message: "carta-frontend - Success - ${env.BRANCH_NAME} <${env.RUN_DISPLAY_URL}|${COMMIT_ID}>";
+        }
+        failure {
+            slackSend color: 'danger', message: "carta-frontend - Fail - ${env.BRANCH_NAME} <${env.RUN_DISPLAY_URL}|${COMMIT_ID}>";
+        }
+    }
 }

package/build/asset-manifest.json

@@ -1,23 +1,19 @@
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     "index.html": "./index.html",
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-    "static/css/main.7e13d686.chunk.css",
-    "static/js/main.5d16324f.chunk.js"
+    "static/js/runtime-main.f817eaa9.js",
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+    "static/js/main.285bae97.chunk.js"
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 }

package/build/index.html

@@ -1,6 +1,6 @@
-<!doctype html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1,shrink-to-fit=no"><meta name="theme-color" content="#000000"><link rel="manifest" href="./manifest.json"><link rel="shortcut icon" href="./carta_icon_128px.png"><title>CARTA</title><style>.static-text{font-size:14px;font-weight:400;letter-spacing:0;line-height:1.28581;text-transform:none;color:#182026;font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,Oxygen,Ubuntu,Cantarell,"Open Sans","Helvetica Neue",Icons16,sans-serif}.static-pre{color:#182026;font-size:14px;white-space:pre-line}.static-overlay{position:absolute;top:0;bottom:0;left:0;right:0;margin:auto;height:400px;width:650px}.loading-div{width:650px;height:400px;background:#f5f8fa;text-align:center;padding:15px;box-shadow:0 0 0 1px rgba(16,22,26,.1),0 4px 8px rgba(16,22,26,.1),0 18px 46px 6px rgba(16,22,26,.1);border-radius:6px;border:2px solid #5480b7;box-sizing:border-box}.static-spinner{align-items:center;display:flex;justify-content:center;vertical-align:middle;margin:20px}.static-spinner-animation{width:30px;height:30px;animation:static-spinner-animation .5s linear infinite}@keyframes static-spinner-animation{from{-webkit-transform:rotate(0);transform:rotate(0)}to{-webkit-transform:rotate(360deg);transform:rotate(360deg)}}.static-spinner-track{fill-opacity:0;stroke:rgba(92,112,128,.2);stroke-width:8px}.static-spinner-head{fill-opacity:0;stroke:rgba(43,149,214,.8);stroke-width:13px}.loading-text{animation:cssAnimation 5s forwards;opacity:0}@keyframes cssAnimation{0%{opacity:0}90%{opacity:0}100%{opacity:1}}</style><link href="./static/css/2.d176c5ad.chunk.css" rel="stylesheet"><link href="./static/css/main.7e13d686.chunk.css" rel="stylesheet"></head><body><noscript>You need to enable JavaScript to run this app.</noscript><div id="root"><div class="static-overlay"><div class="loading-div"><img src="carta_logo.png" width="150" height="175" alt="CARTA"><div class="static-spinner"><div class="static-spinner-animation"><svg width="30" height="30" viewBox="-1.67 -1.67 103.33 103.33"><path class="static-spinner-track" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90"/><path class="static-spinner-head" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90" pathLength="280" stroke-dasharray="280 280" stroke-dashoffset="210"/></svg></div></div><div class="loading-text"><p class="static-text">Loading CARTA. If this message does not disappear, please <a href="https://refreshyourcache.com/en/cache/">hard-reload</a> this site in your browser using the shortcut below:</p><pre class="static-pre">
+<!doctype html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1,shrink-to-fit=no"><meta name="theme-color" content="#000000"><link rel="manifest" href="./manifest.json"><link rel="shortcut icon" href="./carta_icon_128px.png"><title>CARTA</title><style>.static-text{font-size:14px;font-weight:400;letter-spacing:0;line-height:1.28581;text-transform:none;color:#182026;font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,Oxygen,Ubuntu,Cantarell,"Open Sans","Helvetica Neue",Icons16,sans-serif}.static-pre{color:#182026;font-size:14px;white-space:pre-line}.static-overlay{position:absolute;top:0;bottom:0;left:0;right:0;margin:auto;height:400px;width:650px}.loading-div{width:650px;height:400px;background:#f5f8fa;text-align:center;padding:15px;box-shadow:0 0 0 1px rgba(16,22,26,.1),0 4px 8px rgba(16,22,26,.1),0 18px 46px 6px rgba(16,22,26,.1);border-radius:6px;border:2px solid #5480b7;box-sizing:border-box}.static-spinner{align-items:center;display:flex;justify-content:center;vertical-align:middle;margin:20px}.static-spinner-animation{width:30px;height:30px;animation:static-spinner-animation .5s linear infinite}@keyframes static-spinner-animation{from{-webkit-transform:rotate(0);transform:rotate(0)}to{-webkit-transform:rotate(360deg);transform:rotate(360deg)}}.static-spinner-track{fill-opacity:0;stroke:rgba(92,112,128,.2);stroke-width:8px}.static-spinner-head{fill-opacity:0;stroke:rgba(43,149,214,.8);stroke-width:13px}.loading-text{animation:cssAnimation 5s forwards;opacity:0}@keyframes cssAnimation{0%{opacity:0}90%{opacity:0}100%{opacity:1}}</style><link href="./static/css/2.de548345.chunk.css" rel="stylesheet"><link href="./static/css/main.7ed6d008.chunk.css" rel="stylesheet"></head><body><noscript>You need to enable JavaScript to run this app.</noscript><div id="root"><div class="static-overlay"><div class="loading-div"><img src="carta_logo.png" width="150" height="175" alt="CARTA"><div class="static-spinner"><div class="static-spinner-animation"><svg width="30" height="30" viewBox="-1.67 -1.67 103.33 103.33"><path class="static-spinner-track" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90"/><path class="static-spinner-head" d="M 50,50 m 0,-45 a 45,45 0 1 1 0,90 a 45,45 0 1 1 0,-90" pathLength="280" stroke-dasharray="280 280" stroke-dashoffset="210"/></svg></div></div><div class="loading-text"><p class="static-text">Loading CARTA. If this message does not disappear, please <a href="https://refreshyourcache.com/en/cache/">hard-reload</a> this site in your browser using the shortcut below:</p><pre class="static-pre">
                 macOS : option + command + R (Safari)
                 macOS : shift + command + R (Chrome, Firefox)
                 Linux : shift + control + R
                 Windows : control + F5
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